Citrus Sinensis ID: 010446

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Protein Sequence
MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTVWSLFRPD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccHHHHcccEEEHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccc
Coil and Loop (DISEMBL)
maasflavpspsfcnhrksqvglclpsgiwqngrthfpiCLQMQKCKVKLYMIPCKAIVRFWALKRfasvgslevdtedqkhhlssgfsapndfarsktlhdhssnlwDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILElnrgtesadlvlplfslgslfikegkavdaESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIkdsnymsldDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITekykgkehpsFVTHLLNLAASYSRSKNFVEAERLLRICLDImtktvgpddqsisfpmlhLGITLYHLNRDKEAEKLVLEALYIREIafgkdslpgklLTVWSLFRPD
Flexible Loop (DISEMBL)
maasflavpspsfcnHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILelnrgtesADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEkykgkehpSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREiafgkdslpgklltvwslfrpd
Low Complexity Region (SEG)
MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVgrgqegrelleecllITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTVWSLFRPD
Disordered region (IsUnstruct)
************FCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLE*******************************NLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTVWSLF***
Disordered Region (DISOPRED)
***************************GIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTVWSLFRP*
Disordered Region (DISEMBL)
********PSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGS*************SGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTVWSLFRPD
Disordered Region (DISPRO)
*AASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTVWSLFR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMxxxxxxxxxxxxxxxxxxxxxINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTxxxxxxxxxxxxxxxxxxxxxYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTVWSLFRPD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	510	2.2.26 [Sep-21-2011]
A0JM23	1311	Nephrocystin-3 OS=Xenopus	yes	no	0.486	0.189	0.240	3e-13
Q6AZT7	1300	Nephrocystin-3 OS=Xenopus	N/A	no	0.486	0.190	0.240	8e-13
Q7Z494	1330	Nephrocystin-3 OS=Homo sa	yes	no	0.513	0.196	0.225	7e-11
Q7TNH6	1325	Nephrocystin-3 OS=Mus mus	yes	no	0.523	0.201	0.224	8e-11
P0CI65	1303	Nephrocystin-3 OS=Danio r	yes	no	0.560	0.219	0.231	8e-11
P46822	540	Kinesin light chain OS=Ca	yes	no	0.470	0.444	0.252	1e-08
Q07866	573	Kinesin light chain 1 OS=	no	no	0.437	0.389	0.252	3e-08
Q5R581	560	Kinesin light chain 1 OS=	yes	no	0.437	0.398	0.252	4e-08
Q2HJJ0	616	Kinesin light chain 4 OS=	no	no	0.503	0.417	0.238	8e-08
Q5PQM2	619	Kinesin light chain 4 OS=	no	no	0.482	0.397	0.247	8e-08

>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 26/274 (9%)

Query: 245  VTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
            +TSL  + + LG     +G   +AV    R + I E     +   +   L  L  ++++ 
Sbjct: 923  MTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVQS 982

Query: 301  GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
             K  +AE ++ + L+I    YG    RV   + +LA         E+A +L KK+L++ +
Sbjct: 983  KKFGNAEQLYKQALEISENAYGSEHMRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQ 1042

Query: 361  DS--------------------NYMSLDDSIMENMRI--DLAELLHIVGRGQEGRELLEE 398
             S                      ++L     +N R   +L  L ++    +     L+ 
Sbjct: 1043 KSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKR 1102

Query: 399  CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
             L + E+  G +HP     + NLAA Y+  K + +AE L    LDI  + + PD  S+++
Sbjct: 1103 SLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1162

Query: 459  PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
             + HL +      +  +A  L   A+ IR+ +FG
Sbjct: 1163 TVKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFG 1196

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.
Xenopus tropicalis (taxid: 8364)

>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 26/274 (9%)

Query: 245  VTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
            +TSL  + + LG     +G   +AV    R + I E     +   +   L  L  ++++ 
Sbjct: 912  MTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYMQS 971

Query: 301  GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
             K  +AE ++ + L+I    YG    RV   + +LA         E+A +L KK+L++ +
Sbjct: 972  KKFGNAEQLYKQALEISENAYGSEHLRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQ 1031

Query: 361  DS--------------------NYMSLDDSIMENMRI--DLAELLHIVGRGQEGRELLEE 398
             S                      ++L     +N R   +L  L ++    +     L+ 
Sbjct: 1032 KSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKR 1091

Query: 399  CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
             L + E+  G +HP     + NLAA Y+  K + +AE L    LDI  + + PD  S+++
Sbjct: 1092 SLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1151

Query: 459  PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
             + HL +      +  +A  L   A+ IR+ +FG
Sbjct: 1152 TVKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFG 1185

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus laevis (taxid: 8355)

>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 124/293 (42%), Gaps = 31/293 (10%)

Query: 209  MGSMYSTLENY-------EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261
            +  +Y TL  +        ++++  QR + + E+        +  SL  +A V     + 
Sbjct: 942  LADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKF 1001

Query: 262  KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
              A ++Y + + I E   G +       L +L +L+ K+ K   AE    +  KI+ K  
Sbjct: 1002 GNAEQLYKQALEISENAYGADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKAI 1061

Query: 322  GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI--DL 379
             +     G A+                  L ++AL++ +    ++L     +N R   +L
Sbjct: 1062 KKKGNLYGFAL------------------LRRRALQLEE----LTLGKDTPDNARTLNEL 1099

Query: 380  AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
              L ++    +   + L+  L + E+  G +HP     L NLAA  +  K + +AE L  
Sbjct: 1100 GVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYE 1159

Query: 440  ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
              LDI  + + PD  S+++ + HL I    + +  +A  L   A+ IR+ +FG
Sbjct: 1160 RALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFG 1212

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Homo sapiens (taxid: 9606)

>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 119/290 (41%), Gaps = 23/290 (7%)

Query: 226  YQRVINVLESRYGKTSILLVTSLL-GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284
            Y   +   E+  G+ ++L +  L   + + L  +G   +AV    R + I E     +  
Sbjct: 918  YFESLKQYENSEGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHP 977

Query: 285  DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 344
             +   L  L  ++++  K  DAE ++ + L+I    YG +       + +LA        
Sbjct: 978  RVAQSLHQLAGVYVQWKKFGDAEQLYKQALEISENAYGADHPHAARELEALATLYHKQNK 1037

Query: 345  AEEAVELYKKALRVIKDSNY--------------------MSLDDSIMENMRI--DLAEL 382
             E+A    KK++ + + +                      ++L     EN R   +L  L
Sbjct: 1038 YEQAEHFRKKSVIIRQQATRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELGVL 1097

Query: 383  LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442
              +    +   + L+  L + E+  G +HP     L NLAA  +  K + +AE L    L
Sbjct: 1098 YFLQNNLETAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYEKAEELYERAL 1157

Query: 443  DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
            DI  + + PD  S+++ + HL I      +  +A  L   A+ IR+ +FG
Sbjct: 1158 DIRRRALAPDHPSLAYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKSFG 1207

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Mus musculus (taxid: 10090)

>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 29/315 (9%)

Query: 187  MMSGIVDSLKDDEPLLDA--ILLHMGSMYSTLENY-------EKSMLVYQRVINVLESRY 237
            M +   D+LK+ E   ++   +  + ++Y TL  +        +++   QR + + E+  
Sbjct: 896  MATEYFDALKEFEKTCESEQSMSRLANLYETLGRFLKDLGLLSQAVAPLQRSLEIRETAL 955

Query: 238  GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297
                  +  SL  +A V     +   A ++Y + + I E   G E + +   L SL  L+
Sbjct: 956  DPDHPSVAQSLHQLAGVYVHWRKFGNAEQLYKQAMEICENAYGPEHSTVARELDSLSLLY 1015

Query: 298  IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
             K+ K   AE +  R +KI  K   +     G A+                  L ++AL+
Sbjct: 1016 QKQNKYEQAEKLRKRSVKIRQKTARQKGHMYGFAL------------------LKRRALQ 1057

Query: 358  VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417
            +  +   +  D +       +L  L ++       +  L   L + ++  G +HP     
Sbjct: 1058 L--EELTLGKDSTDCAKTLNELGVLYYLQNNLDAAKLFLTRSLEMRQRVLGPDHPDCAQS 1115

Query: 418  LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477
            L NLAA +S  K +  AE L    LDI  + + PD  S+++ + HL +      + ++A 
Sbjct: 1116 LNNLAALHSERKEYESAEELYERALDIRKRALAPDHPSLAYTLKHLAMLYKRRGKLEKAV 1175

Query: 478  KLVLEALYIREIAFG 492
             L   AL IRE +FG
Sbjct: 1176 PLYELALEIREKSFG 1190

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Danio rerio (taxid: 7955)

>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2

 Score = 62.0 bits (149), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 103/246 (41%), Gaps = 6/246 (2%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+++  +    +++ E   G++   +  +L  +A + G 
Sbjct: 243 DHPDVATMLNILALVYRDQNKYKEAANLLNEALSIREKCLGESHPAVAATLNNLAVLFGK 302

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 303 RGKFKDAEPLCKRALEIREKVLGDDHPDVAKQLNNLALLCQNQGKYEEVEKYYKRALEIY 362

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
               G +D  V     +L+ A    G  +EA ELYK+ L    +  +  +     EN  I
Sbjct: 363 ESKLGPDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQILTRAHEREFGQISG---ENKPI 419

Query: 378 -DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436
             +AE         EG    E+      K    + P+  T L NL A Y R   +  AE 
Sbjct: 420 WQIAEEREENKHKGEGATANEQAGWA--KAAKVDSPTVTTTLKNLGALYRRQGKYEAAET 477

Query: 437 LLRICL 442
           L  + L
Sbjct: 478 LEDVAL 483

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 19/242 (7%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 309

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 378 DL--AELLHIVGRGQEGRELLEECLLITEKYKG------KEHPSFVTHLLNLAASYSRSK 429
            +   E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGTSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 430 NF 431
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KLC1 PE=2 SV=3

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 19/242 (7%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 309

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 378 --DLAELLHIVGRGQEGRELLEECLLITEKYKG------KEHPSFVTHLLNLAASYSRSK 429
                E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGTSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 430 NF 431
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Pongo abelii (taxid: 9601)

>sp|Q2HJJ0|KLC4_BOVIN Kinesin light chain 4 OS=Bos taurus GN=KLC4 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 15/272 (5%)

Query: 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG 259
           P++  +L  +  +Y     Y+++ L+    +++ ES  G+    +  +L  +A + G  G
Sbjct: 247 PVVATMLNILALVYRGQNKYKEAALLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRG 306

Query: 260 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319
           + K+A  +  R + I E   GT   D+   L +L  L   +GK    E  + R L IY  
Sbjct: 307 KYKEAEPLCQRALEIREKVLGTNHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYEG 366

Query: 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS-----IMEN 374
             G ++  V     +LA      G   EA  LYK+ L       + S+DD      +   
Sbjct: 367 QLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHVQEFGSVDDDHKPIWMHAE 426

Query: 375 MRIDLAELLHIVGRG--QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432
            R +++++ H  G     E     + C + +        P+  T L NL A Y R     
Sbjct: 427 EREEMSKIRHREGSTPYAEYGGWYKACKVSS--------PTVNTTLRNLGALYRRQGKLE 478

Query: 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464
            AE L    L    +   P  Q+    +L  G
Sbjct: 479 AAETLEECALRSRKQGTDPISQTKVAELLGEG 510

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Bos taurus (taxid: 9913)

>sp|Q5PQM2|KLC4_RAT Kinesin light chain 4 OS=Rattus norvegicus GN=Klc4 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 102/259 (39%), Gaps = 13/259 (5%)

Query: 212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 271
           +Y     Y+++  +    +++ ES  G+    +  +L  +A + G  G+ K+A  +  R 
Sbjct: 262 VYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRA 321

Query: 272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 331
           + I E   GT+  D+   L +L  L   +GK    E  + R L IY +  G ++  V   
Sbjct: 322 LEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYERQLGPDNPNVART 381

Query: 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE 391
             +LA      G   EA  LYK+ L       + S+DD   ++  I     +H   R + 
Sbjct: 382 KNNLASCYLKQGKYSEAETLYKEILTRAHVQEFGSVDD---DHKPI----WMHAEEREEM 434

Query: 392 GRELLEECLLITEKYKG------KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445
            R    E      +Y G         P+  T L NL A Y R      AE L    L   
Sbjct: 435 SRSRSRESGTPYAEYGGWYKACRVSSPTVNTTLRNLGALYRRQGKLEAAETLEECALRSR 494

Query: 446 TKTVGPDDQSISFPMLHLG 464
            +   P  Q+    +L  G
Sbjct: 495 KQGTDPISQTKVAELLGEG 513

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
224135115	579	predicted protein [Populus trichocarpa]	0.970	0.854	0.668	0.0
225455344	573	PREDICTED: nephrocystin-3-like [Vitis vi	0.931	0.828	0.665	0.0
302143919	559	unnamed protein product [Vitis vinifera]	0.903	0.824	0.687	0.0
255561868	505	kinesin light chain, putative [Ricinus c	0.819	0.827	0.677	1e-164
356509235	577	PREDICTED: nephrocystin-3-like [Glycine	0.929	0.821	0.593	1e-163
357463995	580	Kinesin light chain [Medicago truncatula	0.970	0.853	0.596	1e-156
297792665	562	hypothetical protein ARALYDRAFT_495375 [	0.905	0.822	0.575	1e-156
8809597	498	unnamed protein product [Arabidopsis tha	0.884	0.905	0.587	1e-155
449497357	561	PREDICTED: nephrocystin-3-like [Cucumis	0.933	0.848	0.571	1e-154
18423468	564	kinesin light chain-related protein [Ara	0.870	0.787	0.594	1e-154

>gi|224135115|ref|XP_002321987.1| predicted protein [Populus trichocarpa] gi|222868983|gb|EEF06114.1| predicted protein [Populus trichocarpa]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/497 (66%), Positives = 395/497 (79%), Gaps = 2/497 (0%)

Query: 1   MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVR 60
           MA S L    P   N R +Q  + L S   Q G T F ICLQ QKC ++LYMIP   + R
Sbjct: 1   MAVSLLH--HPPLSNQRITQAFVDLNSRSLQRGITCFSICLQKQKCSIELYMIPTTTVAR 58

Query: 61  FWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLE 120
            W LK FAS GSL  + E Q++ +SSGFS  NDF RSKT+ D SS   DG+ DFERQL E
Sbjct: 59  HWMLKTFASAGSLNAEVECQENQISSGFSTSNDFGRSKTVADSSSKPSDGVKDFERQLQE 118

Query: 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKF 180
           LF+EVK MI MGNKNDA+DLLQANYE VKEQINAG++GIEE A LDIIALGY+ IGDLK 
Sbjct: 119 LFDEVKMMIKMGNKNDAMDLLQANYEFVKEQINAGSRGIEEAATLDIIALGYMAIGDLKS 178

Query: 181 VQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240
           V  +L+ +  +V+ L DDEPLLD++L+HMGSMYS L  +EKSMLVYQRVI +LE  +GK 
Sbjct: 179 VGFILNKLDEVVERLTDDEPLLDSVLIHMGSMYSALGKFEKSMLVYQRVIAILERIHGKG 238

Query: 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
           S  LV+ LLGMAK+LGSIG+A KA+E+Y RVI+ILE +RG ES DLV+PL  LG+L IKE
Sbjct: 239 SAFLVSPLLGMAKILGSIGKATKAIEVYQRVISILESSRGAESKDLVVPLSGLGNLLIKE 298

Query: 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           G+A DAES+F+RIL IY + YGE DGR GMA+CS+AH KCA GNAEEA+ LY+KAL+VIK
Sbjct: 299 GRATDAESLFNRILSIYKESYGEYDGRFGMALCSVAHVKCATGNAEEAINLYRKALQVIK 358

Query: 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
           D++YM++DDSIME MRIDLAELLH+VGRG EGRELLEECLLITEKYKGK+HPS VTHL+N
Sbjct: 359 DADYMAVDDSIMERMRIDLAELLHVVGRGNEGRELLEECLLITEKYKGKDHPSSVTHLIN 418

Query: 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480
           LA SYS+SKN+V+AERLLR  L+IM K+V PDD SI+FPMLHL +TLY LN+D+EAE+L 
Sbjct: 419 LATSYSQSKNYVQAERLLRTSLEIMMKSVRPDDSSITFPMLHLAVTLYRLNQDEEAEQLT 478

Query: 481 LEALYIREIAFGKDSLP 497
           LE L+IRE AFGKDSLP
Sbjct: 479 LEVLHIREKAFGKDSLP 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455344|ref|XP_002272297.1| PREDICTED: nephrocystin-3-like [Vitis vinifera]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/485 (66%), Positives = 379/485 (78%), Gaps = 10/485 (2%)

Query: 23  LCLPSGIWQNGRTH----------FPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGS 72
           L LPS      R H          F +CL+ QKC +KLYMIP   IV    L+ FA++GS
Sbjct: 5   LLLPSQRISQMRMHSEDLTKDVMCFSLCLKRQKCNIKLYMIPASTIVHHGVLRPFATIGS 64

Query: 73  LEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMG 132
              D  +Q +H+S G  APN F RS+TL   SS+     NDFERQL ELFN VK+MI MG
Sbjct: 65  SGADGINQGNHVSLGVFAPNKFQRSRTLLHSSSSPSGDENDFERQLQELFNAVKTMIKMG 124

Query: 133 NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192
           NK DAIDLLQANYEAVKEQI+ G KG+E+ AILDII LGY+ +GDLK V+SLLDMM  IV
Sbjct: 125 NKKDAIDLLQANYEAVKEQIDVGAKGMEQAAILDIIVLGYMLVGDLKLVRSLLDMMDKIV 184

Query: 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252
           D LKDDE LLD++LLHMGS+YSTL  +EKSML+Y+R + +LE  YGK S  L+T LLGMA
Sbjct: 185 DGLKDDEALLDSVLLHMGSVYSTLGKFEKSMLMYRRALEILEMTYGKDSAFLITPLLGMA 244

Query: 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312
           K LGSIGR  KAVEIYH+ I ILEL+RG ES DLV+PL  LG+L IKE KA DAE  F+R
Sbjct: 245 KALGSIGRVTKAVEIYHQAIAILELSRGAESEDLVVPLLGLGNLLIKERKATDAEIPFTR 304

Query: 313 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372
           IL IY + YGENDGRVG+AMCSLAH KCA G+A+EA++LY+ AL+++K S YM+LDD+IM
Sbjct: 305 ILNIYKRSYGENDGRVGIAMCSLAHVKCAKGDADEAIQLYRNALQIVKVSKYMALDDNIM 364

Query: 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432
           E MRIDLAELLH+VGRG+EGRELLEECLLITEKYKG++HPS VTHL+NLA SYSRSKNFV
Sbjct: 365 EKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGEDHPSSVTHLINLATSYSRSKNFV 424

Query: 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
           EAERLLR  L IM KT+GPDDQSI+FPMLHL +TLYHL RD+EAE+L L+AL IRE AFG
Sbjct: 425 EAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYHLKRDEEAEQLTLKALQIREAAFG 484

Query: 493 KDSLP 497
           K+SLP
Sbjct: 485 KESLP 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143919|emb|CBI23024.3| unnamed protein product [Vitis vinifera]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/461 (68%), Positives = 373/461 (80%)

Query: 37  FPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFAR 96
           F +CL+ QKC +KLYMIP   IV    L+ FA++GS   D  +Q +H+S G  APN F R
Sbjct: 15  FSLCLKRQKCNIKLYMIPASTIVHHGVLRPFATIGSSGADGINQGNHVSLGVFAPNKFQR 74

Query: 97  SKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGN 156
           S+TL   SS+     NDFERQL ELFN VK+MI MGNK DAIDLLQANYEAVKEQI+ G 
Sbjct: 75  SRTLLHSSSSPSGDENDFERQLQELFNAVKTMIKMGNKKDAIDLLQANYEAVKEQIDVGA 134

Query: 157 KGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL 216
           KG+E+ AILDII LGY+ +GDLK V+SLLDMM  IVD LKDDE LLD++LLHMGS+YSTL
Sbjct: 135 KGMEQAAILDIIVLGYMLVGDLKLVRSLLDMMDKIVDGLKDDEALLDSVLLHMGSVYSTL 194

Query: 217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276
             +EKSML+Y+R + +LE  YGK S  L+T LLGMAK LGSIGR  KAVEIYH+ I ILE
Sbjct: 195 GKFEKSMLMYRRALEILEMTYGKDSAFLITPLLGMAKALGSIGRVTKAVEIYHQAIAILE 254

Query: 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA 336
           L+RG ES DLV+PL  LG+L IKE KA DAE  F+RIL IY + YGENDGRVG+AMCSLA
Sbjct: 255 LSRGAESEDLVVPLLGLGNLLIKERKATDAEIPFTRILNIYKRSYGENDGRVGIAMCSLA 314

Query: 337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396
           H KCA G+A+EA++LY+ AL+++K S YM+LDD+IME MRIDLAELLH+VGRG+EGRELL
Sbjct: 315 HVKCAKGDADEAIQLYRNALQIVKVSKYMALDDNIMEKMRIDLAELLHVVGRGKEGRELL 374

Query: 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456
           EECLLITEKYKG++HPS VTHL+NLA SYSRSKNFVEAERLLR  L IM KT+GPDDQSI
Sbjct: 375 EECLLITEKYKGEDHPSSVTHLINLATSYSRSKNFVEAERLLRTSLRIMMKTMGPDDQSI 434

Query: 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497
           +FPMLHL +TLYHL RD+EAE+L L+AL IRE AFGK+SLP
Sbjct: 435 TFPMLHLAVTLYHLKRDEEAEQLTLKALQIREAAFGKESLP 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561868|ref|XP_002521943.1| kinesin light chain, putative [Ricinus communis] gi|223538868|gb|EEF40467.1| kinesin light chain, putative [Ricinus communis]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/418 (67%), Positives = 345/418 (82%)

Query: 80  QKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAID 139
           Q+   SSG S  + F RS+ L D  SN  +G+NDF RQL ELF+EVK+MI+MGN +DA+D
Sbjct: 4   QEDVASSGSSNESAFLRSRPLLDDPSNPSNGVNDFARQLQELFDEVKAMILMGNSSDAMD 63

Query: 140 LLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199
           LLQANYE VKE I+AG +GIEE A+LDIIALGY+ IGDL  V S+L++++ ++ +LKDD 
Sbjct: 64  LLQANYEIVKELIDAGARGIEEAAMLDIIALGYMAIGDLGTVGSILNLLNMVIKNLKDDG 123

Query: 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG 259
           PLLD++L+HMGSMYS L  +EKSM+ YQRVI+VLES+YG++SI +V  LLGM KVLGSIG
Sbjct: 124 PLLDSVLMHMGSMYSALGKFEKSMIAYQRVISVLESKYGESSIFIVPPLLGMGKVLGSIG 183

Query: 260 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319
           R  KA E+Y RVI ILE  RG ES +LV+PLF LG+L +KEG+  DAE  F RIL IY K
Sbjct: 184 RVNKATEVYQRVIIILESGRGAESKELVVPLFGLGNLLMKEGRTTDAEIHFIRILNIYRK 243

Query: 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
           +YGENDGR GMA+CS+A+ KC+ GN EEA++LY+KAL VIKDSNYM+ DD++ME MRIDL
Sbjct: 244 LYGENDGRYGMALCSVANLKCSTGNVEEAIDLYRKALEVIKDSNYMAKDDTVMEKMRIDL 303

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           AELLH+VGRG+EGRELLEECLLITE+YKGKEHPS V HLLNLA SYS+SKNFVEAERLLR
Sbjct: 304 AELLHVVGRGKEGRELLEECLLITEEYKGKEHPSSVAHLLNLATSYSQSKNFVEAERLLR 363

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497
           I L+IM KTV P+DQS++FPML L +TLY+LNRD+EAE+L +E L IRE AFGKDSLP
Sbjct: 364 ISLEIMMKTVSPEDQSVTFPMLQLAMTLYNLNRDEEAEQLAVEVLRIREKAFGKDSLP 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509235|ref|XP_003523356.1| PREDICTED: nephrocystin-3-like [Glycine max]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 295/497 (59%), Positives = 368/497 (74%), Gaps = 23/497 (4%)

Query: 1   MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVR 60
           + +SF  + +     H    + LC    I     T F +C Q QK   KLY+IP + +  
Sbjct: 20  LTSSFTGIRTSKELRH---MLSLCELKSI-----TCFSVCNQKQKYNQKLYIIPVRTVCV 71

Query: 61  FWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLE 120
            + + R +SVGS+E+          SGFSAPND+ R              ++  E++L E
Sbjct: 72  RFCISR-SSVGSVELSGTGTHSDAYSGFSAPNDYQR--------------IDSLEKELEE 116

Query: 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKF 180
           LF+EVK MI MGNKNDAIDLL ANYE VKE++NAG KGIEE A LDIIALGY+ +GDLKF
Sbjct: 117 LFDEVKRMISMGNKNDAIDLLTANYEVVKERLNAGTKGIEEAATLDIIALGYMAVGDLKF 176

Query: 181 VQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240
           V SLL+MM  +VD+LKDD P LD+IL+HMGSMY+TL  +EKS+ VYQR + ++E  YG  
Sbjct: 177 VGSLLNMMKEVVDNLKDDAPRLDSILMHMGSMYATLSKFEKSLDVYQRAVYIMERTYGMD 236

Query: 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
           S  LVT  LGMAKVLGSIG+A KA+E Y RVIT+LE +RGT+S DLV+PL SL +L +KE
Sbjct: 237 STFLVTPCLGMAKVLGSIGKATKAIETYQRVITLLESSRGTKSKDLVVPLLSLANLLLKE 296

Query: 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           G+A DAE+ F+R+L IYT++YG+NDG++GMAM SLA  KCA G ++EA++L+K+A++V+K
Sbjct: 297 GRANDAETHFTRVLNIYTELYGQNDGKIGMAMSSLARVKCAQGKSDEAIQLFKRAIQVMK 356

Query: 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
           DSNY+S DD+IME MR+DLAELLH VGRGQEGRELLEECL ITE+YKGKEHPS VTH++N
Sbjct: 357 DSNYLSPDDNIMEKMRVDLAELLHTVGRGQEGRELLEECLWITERYKGKEHPSLVTHMIN 416

Query: 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480
           LA SYSRSKN+ +AE LLR  L IM K  G DDQSISFPMLHL +TLYHL +D+EAEKL 
Sbjct: 417 LATSYSRSKNYADAEHLLRRSLQIMIKQKGTDDQSISFPMLHLAVTLYHLKKDEEAEKLA 476

Query: 481 LEALYIREIAFGKDSLP 497
           LE L IRE AFGK+SLP
Sbjct: 477 LEVLRIREKAFGKNSLP 493

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463995|ref|XP_003602279.1| Kinesin light chain [Medicago truncatula] gi|355491327|gb|AES72530.1| Kinesin light chain [Medicago truncatula]

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 297/498 (59%), Positives = 362/498 (72%), Gaps = 3/498 (0%)

Query: 1   MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVR 60
           M AS   VPSPSF   R S+    + S         F +C Q Q    KLY+IP + I R
Sbjct: 1   MEASSCFVPSPSFIGFRTSKDRPHVLSLQEFKRIISFSVCNQKQNYNEKLYIIPIRTISR 60

Query: 61  FWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLH-DHSSNLWDGMNDFERQLL 119
           F   + FA   SLE+     +     G+SAP++  R  TL  D +S+ +   ++F+++L 
Sbjct: 61  FCISRSFAK--SLELGGTGPQSDALLGYSAPDEDNRRFTLSLDSASSAFHRFSNFDKELE 118

Query: 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK 179
           ELF EVK MI MG K+DAIDLL ANYE VKE++NAG KGIEE AILDI+ALGY+ +GDLK
Sbjct: 119 ELFGEVKKMIKMGKKSDAIDLLNANYEMVKERLNAGTKGIEEAAILDILALGYMAVGDLK 178

Query: 180 FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239
            V  LL+ +  +VD+LKDD P LD+I++HMG+MY+TL  +E+S+  YQR + ++E  YGK
Sbjct: 179 SVGYLLNSLKEVVDTLKDDAPHLDSIVMHMGNMYATLNKFEESLNTYQRAVYIVERIYGK 238

Query: 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 299
            S +LVT  LGMAK LGSIG+A KAVEIY  VIT+LE NRG ES DLV+PL SLG+L +K
Sbjct: 239 DSTILVTPHLGMAKALGSIGKATKAVEIYQHVITLLESNRGAESKDLVVPLLSLGNLLLK 298

Query: 300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359
           EG+A DAES FSR+L IYTKVYGENDGR+GMAM SLA  KCA G  +EA+ L+K+AL+V+
Sbjct: 299 EGRANDAESRFSRVLNIYTKVYGENDGRIGMAMSSLAQVKCALGKTDEAIHLFKRALKVM 358

Query: 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 419
           KDSNYMS D+SIME MR+DLAELLH  GRGQ+GRE+LEECLLITE+YKGKEHPS  TH++
Sbjct: 359 KDSNYMSPDNSIMEKMRVDLAELLHTSGRGQKGREILEECLLITERYKGKEHPSLATHMI 418

Query: 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479
           NLA SY+RSKN+ EAE LLR  L IM K  G DDQSISFPML L  TLYHL  D+EAEKL
Sbjct: 419 NLATSYTRSKNYAEAEHLLRRSLQIMIKHNGTDDQSISFPMLQLAATLYHLKNDEEAEKL 478

Query: 480 VLEALYIREIAFGKDSLP 497
            LE L IRE AFG  SLP
Sbjct: 479 ALEVLRIREKAFGDYSLP 496

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792665|ref|XP_002864217.1| hypothetical protein ARALYDRAFT_495375 [Arabidopsis lyrata subsp. lyrata] gi|297310052|gb|EFH40476.1| hypothetical protein ARALYDRAFT_495375 [Arabidopsis lyrata subsp. lyrata]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/485 (57%), Positives = 360/485 (74%), Gaps = 23/485 (4%)

Query: 13  FCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGS 72
           + N   SQ G       WQ G     +C + QK K KLY+IP     R + L    SV S
Sbjct: 17  WANQLSSQSGSAPRDSTWQYG-----VCFRNQKRKTKLYLIPA----RHFLLTPIDSVTS 67

Query: 73  LEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMG 132
               +E    H +SG S       S  +H+        M +FE +L ELFNEVK+M+ +G
Sbjct: 68  ----SESASVHATSGVSEVQRSTSSNNVHE--------MEEFEMELQELFNEVKAMVKIG 115

Query: 133 NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192
            + DA+DLL+ANY AVKE++++G KGIE+ A+LDIIALGY+ +GDLK + +LLDM++ IV
Sbjct: 116 KERDAVDLLRANYVAVKEEMDSGLKGIEQAAVLDIIALGYMAVGDLKPIPALLDMINKIV 175

Query: 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252
           D+LKD EPLLD++L+H+GSMYS +  +E S+L +QR + +LE+RYGK + LLVT LLG+A
Sbjct: 176 DNLKDSEPLLDSVLMHVGSMYSAIGKFENSILTHQRAVRILENRYGKGNTLLVTPLLGLA 235

Query: 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312
           K+  S G+A KA+ +Y R +TILE NRG++S DLV+PLFSLG L +KEGKA +AE  F+R
Sbjct: 236 KIFASDGKATKAIGVYERTVTILERNRGSQSEDLVMPLFSLGKLLLKEGKAAEAEIHFTR 295

Query: 313 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372
           I+ IY K+YGE DGRVGMAMCSLA+AKC+ G+A EAV++YK ALR+IKDS  M++D+SI+
Sbjct: 296 IVNIYKKIYGEKDGRVGMAMCSLANAKCSKGDANEAVDIYKNALRIIKDS--MAIDNSIL 353

Query: 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432
           ENMR DLAELLH VGRG EGRELLEECLLI E++KGK HPS  THL+NLAASYSRSKN+V
Sbjct: 354 ENMRTDLAELLHFVGRGDEGRELLEECLLINERFKGKNHPSMATHLINLAASYSRSKNYV 413

Query: 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
           EAERLLR CL+IM ++VG +DQSI+FPML+L +TL  LNRD+EAE++ L+ L IRE AF 
Sbjct: 414 EAERLLRTCLNIMEESVGSEDQSITFPMLNLAVTLSQLNRDEEAEQVALKVLRIREKAFA 473

Query: 493 KDSLP 497
           KDSLP
Sbjct: 474 KDSLP 478

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8809597|dbj|BAA97148.1| unnamed protein product [Arabidopsis thaliana]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/466 (58%), Positives = 358/466 (76%), Gaps = 15/466 (3%)

Query: 39  ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK 98
           +CL+ QK K KLY+IP +  +            S  +D+       +S ++       S+
Sbjct: 37  VCLRNQKRKPKLYLIPARHFL------------STPIDSVSSSSITASRYATS---GVSE 81

Query: 99  TLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG 158
                SSN    M +FE +L ELFNEVKSM+ +G ++DA+DLL+ANY AVKE++++G KG
Sbjct: 82  VQRSTSSNNVTEMEEFEMELQELFNEVKSMVKIGKESDAMDLLRANYVAVKEELDSGLKG 141

Query: 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN 218
           IE+ A+LDIIALGY+ +GDLK V +LLDM++ IVD+LKD EPLLD++L+H+GSMYS +  
Sbjct: 142 IEQAAVLDIIALGYMAVGDLKPVPALLDMINKIVDNLKDSEPLLDSVLMHVGSMYSVIGK 201

Query: 219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278
           +E ++LV+QR I +LE+RYGK + LLVT LLGMAK   S G+A KA+ +Y R +TILE N
Sbjct: 202 FENAILVHQRAIRILENRYGKCNTLLVTPLLGMAKSFASDGKATKAIGVYERTLTILERN 261

Query: 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338
           RG+ES DLV+PLFSLG L +KEGKA +AE  F+ I+ IY K+YGE DGRVGMAMCSLA+A
Sbjct: 262 RGSESEDLVVPLFSLGKLLLKEGKAAEAEIPFTSIVNIYKKIYGERDGRVGMAMCSLANA 321

Query: 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398
           KC+ G+A EAV++Y+ ALR+IKDSNYM++D+SI+ENMRIDLAELLH VGRG EGRELLEE
Sbjct: 322 KCSKGDANEAVDIYRNALRIIKDSNYMTIDNSILENMRIDLAELLHFVGRGDEGRELLEE 381

Query: 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
           CLLI E++KGK HPS  THL+NLAASYSRSKN+VEAERLLR CL+IM  +VG + QSI+F
Sbjct: 382 CLLINERFKGKNHPSMATHLINLAASYSRSKNYVEAERLLRTCLNIMEVSVGSEGQSITF 441

Query: 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTVW 504
           PML+L +TL  LNRD+EAE++ L+ L IRE AFG+DSLP  ++T++
Sbjct: 442 PMLNLAVTLSQLNRDEEAEQIALKVLRIREKAFGEDSLPVGIITLF 487

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497357|ref|XP_004160380.1| PREDICTED: nephrocystin-3-like [Cucumis sativus]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/495 (57%), Positives = 367/495 (74%), Gaps = 19/495 (3%)

Query: 3   ASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFW 62
           A+FL + SPS+ +       +C  + I     T   +CLQ  KC +KLY +P  A   F 
Sbjct: 2   ATFLLLSSPSYSH------CICKRASI-----TCSSVCLQ--KCNIKLYAVPVGA---FS 45

Query: 63  ALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELF 122
            L       S       ++ H+SS F+ P  + RS   H H     + + +FE QL EL 
Sbjct: 46  CLSASTPSASSRAAFGAERKHVSSAFT-PIGYQRSD--HMHYRTDCNTVAEFEVQLEELL 102

Query: 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182
           NEV+++ M G K+DA++LLQANYEAVKEQ+ +G  GIE+ A+LDI+ALGY+ +GDLKFV 
Sbjct: 103 NEVRTLTMSGRKSDAVELLQANYEAVKEQMESGAVGIEQAAVLDIVALGYLTVGDLKFVA 162

Query: 183 SLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI 242
           S+LD+++ +VDSL D EP LD++LLHMGSMYSTL+ +EKS+ VY+R I+++E ++G+ S 
Sbjct: 163 SVLDILNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSISVYKRAIDIMEKKFGEDSS 222

Query: 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 302
            L+T +LGMAKVLG+IGRA KAVE Y+R I++LE +RG E+ DLV+PL SLG+L +KEGK
Sbjct: 223 FLITPILGMAKVLGTIGRAGKAVECYNRAISLLESSRGFENEDLVIPLISLGNLMLKEGK 282

Query: 303 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362
             DAE+ F+RI+ IY K+YGE +G+VGMAM SLA+AKCA G A+EAV L ++AL +IKDS
Sbjct: 283 GKDAETCFARIVNIYEKLYGEKNGKVGMAMYSLANAKCARGEADEAVTLCRRALEIIKDS 342

Query: 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422
           N ++LDDS +E MRIDLAELLH++GR  EGRELLEECLLI E+ KGKEHPS V HL+NLA
Sbjct: 343 NDIALDDSTIEKMRIDLAELLHVLGRANEGRELLEECLLINERLKGKEHPSSVKHLVNLA 402

Query: 423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482
           ASYSRSKN+VEAERLLRI LDIM K VG DDQSI+ PML+L +TLY+L +D +AE+L LE
Sbjct: 403 ASYSRSKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLNLAVTLYNLKQDNDAEQLALE 462

Query: 483 ALYIREIAFGKDSLP 497
            L IRE AFGKDSLP
Sbjct: 463 VLRIRENAFGKDSLP 477

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423468|ref|NP_568784.1| kinesin light chain-related protein [Arabidopsis thaliana] gi|53828571|gb|AAU94395.1| At5g53080 [Arabidopsis thaliana] gi|332008918|gb|AED96301.1| kinesin light chain-related protein [Arabidopsis thaliana]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 273/459 (59%), Positives = 353/459 (76%), Gaps = 15/459 (3%)

Query: 39  ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK 98
           +CL+ QK K KLY+IP +  +            S  +D+       +S ++       S+
Sbjct: 37  VCLRNQKRKPKLYLIPARHFL------------STPIDSVSSSSITASRYATS---GVSE 81

Query: 99  TLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG 158
                SSN    M +FE +L ELFNEVKSM+ +G ++DA+DLL+ANY AVKE++++G KG
Sbjct: 82  VQRSTSSNNVTEMEEFEMELQELFNEVKSMVKIGKESDAMDLLRANYVAVKEELDSGLKG 141

Query: 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN 218
           IE+ A+LDIIALGY+ +GDLK V +LLDM++ IVD+LKD EPLLD++L+H+GSMYS +  
Sbjct: 142 IEQAAVLDIIALGYMAVGDLKPVPALLDMINKIVDNLKDSEPLLDSVLMHVGSMYSVIGK 201

Query: 219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278
           +E ++LV+QR I +LE+RYGK + LLVT LLGMAK   S G+A KA+ +Y R +TILE N
Sbjct: 202 FENAILVHQRAIRILENRYGKCNTLLVTPLLGMAKSFASDGKATKAIGVYERTLTILERN 261

Query: 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338
           RG+ES DLV+PLFSLG L +KEGKA +AE  F+ I+ IY K+YGE DGRVGMAMCSLA+A
Sbjct: 262 RGSESEDLVVPLFSLGKLLLKEGKAAEAEIPFTSIVNIYKKIYGERDGRVGMAMCSLANA 321

Query: 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398
           KC+ G+A EAV++Y+ ALR+IKDSNYM++D+SI+ENMRIDLAELLH VGRG EGRELLEE
Sbjct: 322 KCSKGDANEAVDIYRNALRIIKDSNYMTIDNSILENMRIDLAELLHFVGRGDEGRELLEE 381

Query: 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
           CLLI E++KGK HPS  THL+NLAASYSRSKN+VEAERLLR CL+IM  +VG + QSI+F
Sbjct: 382 CLLINERFKGKNHPSMATHLINLAASYSRSKNYVEAERLLRTCLNIMEVSVGSEGQSITF 441

Query: 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497
           PML+L +TL  LNRD+EAE++ L+ L IRE AFG+DSLP
Sbjct: 442 PMLNLAVTLSQLNRDEEAEQIALKVLRIREKAFGEDSLP 480

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
TAIR|locus:2168387	564	AT5G53080 [Arabidopsis thalian	0.878	0.794	0.571	1.9e-131
UNIPROTKB|Q5LU72	374	SPO1186 "TPR domain protein" [	0.556	0.759	0.272	1.6e-15
TIGR_CMR|SPO_1186	374	SPO_1186 "TPR domain protein"	0.556	0.759	0.272	1.6e-15
ASPGD|ASPL0000018313	1288	AN3547 [Emericella nidulans (t	0.596	0.236	0.266	4.4e-14
UNIPROTKB|F1NZ11	497	KLC1 "Uncharacterized protein"	0.682	0.700	0.221	1.2e-09
UNIPROTKB|F1SNS5	293	F1SNS5 "Uncharacterized protei	0.403	0.703	0.230	1.8e-09
UNIPROTKB|A0JM23	1311	nphp3 "Nephrocystin-3" [Xenopu	0.403	0.157	0.220	6.1e-09
UNIPROTKB|E1BSU8	1316	NPHP3 "Uncharacterized protein	0.403	0.156	0.225	6.1e-09
UNIPROTKB|Q6AZT7	1300	nphp3 "Nephrocystin-3" [Xenopu	0.403	0.158	0.225	1e-08
MGI|MGI:1921275	1325	Nphp3 "nephronophthisis 3 (ado	0.403	0.155	0.244	2.2e-08

TAIR|locus:2168387 AT5G53080 [Arabidopsis thaliana (taxid:3702)]

 Score = 1289 (458.8 bits), Expect = 1.9e-131, P = 1.9e-131
 Identities = 265/464 (57%), Positives = 347/464 (74%)

Query:    39 ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK 98
             +CL+ QK K KLY+IP     R +      SV S  +       + +SG S   +  RS 
Sbjct:    37 VCLRNQKRKPKLYLIPA----RHFLSTPIDSVSSSSITAS---RYATSGVS---EVQRST 86

Query:    99 TLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG 158
             +    S+N+ + M +FE +L ELFNEVKSM+ +G ++DA+DLL+ANY AVKE++++G KG
Sbjct:    87 S----SNNVTE-MEEFEMELQELFNEVKSMVKIGKESDAMDLLRANYVAVKEELDSGLKG 141

Query:   159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN 218
             IE+ A+LDIIALGY+ +GDLK V +LLDM++ IVD+LKD EPLLD++L+H+GSMYS +  
Sbjct:   142 IEQAAVLDIIALGYMAVGDLKPVPALLDMINKIVDNLKDSEPLLDSVLMHVGSMYSVIGK 201

Query:   219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278
             +E ++LV+QR I +LE+RYGK + LLVT LLGMAK   S G+A KA+ +Y R +TILE N
Sbjct:   202 FENAILVHQRAIRILENRYGKCNTLLVTPLLGMAKSFASDGKATKAIGVYERTLTILERN 261

Query:   279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338
             RG+ES DLV+PLFSLG L +KEGKA +AE  F+ I+ IY K+YGE DGRVGMAMCSLA+A
Sbjct:   262 RGSESEDLVVPLFSLGKLLLKEGKAAEAEIPFTSIVNIYKKIYGERDGRVGMAMCSLANA 321

Query:   339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVXXXXXXXXXXXX 398
             KC+ G+A EAV++Y+ ALR+IKDSNYM++D+SI+ENMRIDLAELLH V            
Sbjct:   322 KCSKGDANEAVDIYRNALRIIKDSNYMTIDNSILENMRIDLAELLHFVGRGDEGRELLEE 381

Query:   399 XXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
                I E++KGK HPS  THL+NLAASYSRSKN+VEAERLLR CL+IM  +VG + QSI+F
Sbjct:   382 CLLINERFKGKNHPSMATHLINLAASYSRSKNYVEAERLLRTCLNIMEVSVGSEGQSITF 441

Query:   459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-GKLL 501
             PML+L +TL  LNRD+EAE++ L+ L IRE AFG+DSLP G+ L
Sbjct:   442 PMLNLAVTLSQLNRDEEAEQIALKVLRIREKAFGEDSLPVGEAL 485

GO:0009507 "chloroplast" evidence=ISM

GO:0042802 "identical protein binding" evidence=IEA

UNIPROTKB|Q5LU72 SPO1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 220 (82.5 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 78/286 (27%), Positives = 119/286 (41%)

Query:   207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 266
             L +   Y     + ++  +Y++V+     ++G       T L  +A+VL +  R  +A  
Sbjct:    69 LEVAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAES 128

Query:   267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326
             +Y + + I     G E  D  + L +L  L    G+   AE ++   + I  KV GE   
Sbjct:   129 LYRQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHY 188

Query:   327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 386
             R   A  +LA         EEA  L ++AL +   S  +    S+      +LAELL   
Sbjct:   189 RYATAQNNLAGLLQDMLRFEEAEALCRQALEIT--SKTLGESHSVYATRLNNLAELLGTT 246

Query:   387 XXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
                            IT+K  G+EHP F   L NLA     +  + EAE L R  L+I  
Sbjct:   247 ERYGEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITH 306

Query:   447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
             +T+G      +  + +    L    R  EAE L  +AL I E A G
Sbjct:   307 RTLGEAHPDYATRLNNFAGLLDSTERYDEAEPLYRQALEICEKALG 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1186 SPO_1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 220 (82.5 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 78/286 (27%), Positives = 119/286 (41%)

Query:   207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 266
             L +   Y     + ++  +Y++V+     ++G       T L  +A+VL +  R  +A  
Sbjct:    69 LEVAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAES 128

Query:   267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326
             +Y + + I     G E  D  + L +L  L    G+   AE ++   + I  KV GE   
Sbjct:   129 LYRQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHY 188

Query:   327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 386
             R   A  +LA         EEA  L ++AL +   S  +    S+      +LAELL   
Sbjct:   189 RYATAQNNLAGLLQDMLRFEEAEALCRQALEIT--SKTLGESHSVYATRLNNLAELLGTT 246

Query:   387 XXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
                            IT+K  G+EHP F   L NLA     +  + EAE L R  L+I  
Sbjct:   247 ERYGEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITH 306

Query:   447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
             +T+G      +  + +    L    R  EAE L  +AL I E A G
Sbjct:   307 RTLGEAHPDYATRLNNFAGLLDSTERYDEAEPLYRQALEICEKALG 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)]

 Score = 217 (81.4 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 83/312 (26%), Positives = 139/312 (44%)

Query:   197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK--TSILLVTSLLGMAKV 254
             D    LD +  ++G++YS     +++  +YQR +   E   G   TS L   + LG+  +
Sbjct:   790 DHTSTLDTVN-NLGNLYSDQGKLKEAEKMYQRALAGKEKALGPDHTSTLDTVNNLGI--L 846

Query:   255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314
                 G+ K+A E+Y R +   E   G +    ++ + +LG+L+  +GK  +AE ++ + L
Sbjct:   847 YSDQGKLKEAEEMYQRALAGYEKALGPDHTSTLVTVNNLGNLYSDQGKLKEAEKMYQQAL 906

Query:   315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 374
             K Y K  G +       + +L       G  +EA E+Y++AL   K+        S ++ 
Sbjct:   907 KGYEKALGPDHTSTLDTVNNLGSLYKNQGKLKEAEEMYQQALAG-KEKALGPDHTSTLDT 965

Query:   375 MRIDLAELLHIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434
             +  +L  L                     EK  G +H S +  + NL + YS      EA
Sbjct:   966 VN-NLGILYKNQGKLKEAEEMYQRALAGKEKALGPDHTSTLMTVNNLGSLYSDQGKLKEA 1024

Query:   435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494
             E++ +  L    K +GPD  S    + +LG       + KEAEK+  +AL   E A G D
Sbjct:  1025 EKMYQQALAGYEKALGPDHTSTLITVNNLGNLYSDQGKLKEAEKMYQQALAGYEKALGPD 1084

Query:   495 SLPGKLLTVWSL 506
                  L+TV +L
Sbjct:  1085 HT-STLVTVNNL 1095

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1NZ11 KLC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 79/356 (22%), Positives = 135/356 (37%)

Query:   100 LHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI 159
             L D  +N    +   E+ + +L  E K +  M       D +  +  A  +Q   G +  
Sbjct:   120 LRDELANTQQKLQKSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSVTAAAQQ--GGYEIP 177

Query:   160 EEVAILDIIALGYVYIGDLKFVQSLLDM-MSGIVDSLKDDEPLLDAILLHMGSMYSTLEN 218
               +  L  + + Y   G  +    L    +  +  +   D P +  +L  +  +Y     
Sbjct:   178 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK 237

Query:   219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278
             Y+ +  +    + + E   GK    +  +L  +A + G  G+ K+A  +  R + I E  
Sbjct:   238 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 297

Query:   279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338
              G +  D+   L +L  L   +GK  + E  + R L+IY    G +D  V     +LA  
Sbjct:   298 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC 357

Query:   339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL-AELLHIVXXXXXXXXXXX 397
                 G  ++A  LYK+ L    +  + S+DD   EN  I + AE                
Sbjct:   358 YLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPIWMHAEEREECKGKQKDGTSFG 414

Query:   398 XXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 453
                   +  K  + P+  T L NL A Y R   F  AE L    +    +  G D+
Sbjct:   415 EYGGWYKACK-VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQATGLDN 469

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

UNIPROTKB|F1SNS5 F1SNS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 49/213 (23%), Positives = 100/213 (46%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    +    L+ + + Y    +L+    F++  L+M   +   L  D P     
Sbjct:    25 EELTLGKDTPDNARTLNELGVLYYLQNNLETAEQFLKRSLEMRERV---LGPDHPDCAQS 81

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             L ++ ++ +  + Y+K+  +Y+R +++           L  ++  +A +   +G+  KAV
Sbjct:    82 LNNLAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAV 141

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L+ +  K ++A  ++ R LKIY    G   
Sbjct:   142 PLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQMKKHIEALPLYERALKIYEDSLGRMH 201

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA      G+ E+A ELYK+A+ +
Sbjct:   202 PRVGETLKNLAVLSYEEGDFEKAAELYKRAMEI 234

GO:0005871 "kinesin complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|A0JM23 nphp3 "Nephrocystin-3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 170 (64.9 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 47/213 (22%), Positives = 101/213 (47%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    +    L+ + + Y    +L+    F++  L+M   ++ +   D P     
Sbjct:  1065 EELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGA---DHPDCAQS 1121

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             + ++ ++Y+  + Y+K+  +Y+R +++           L  ++  +A +    G+  KAV
Sbjct:  1122 INNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAV 1181

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L+ +  K  +A  ++ R +KIY    G   
Sbjct:  1182 PLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQMKKQAEASPLYERAMKIYEDSLGRMH 1241

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA  +   G+ E+A ELYK+A+ +
Sbjct:  1242 PRVGETLKNLAVLRYEEGDFEKAAELYKRAMEI 1274

GO:0005929 "cilium" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=ISS

UNIPROTKB|E1BSU8 NPHP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 48/213 (22%), Positives = 102/213 (47%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    +    L+ + + Y    +L+    F++  L+M   +   L  + P     
Sbjct:  1067 EELTLGKDTPDNARTLNELGVLYYLQNNLETAELFLKRSLEMRERV---LGPNHPDCAQS 1123

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             L ++ ++Y+  ++Y+K+  +Y++ +++           L  ++  +A +   +G+  KAV
Sbjct:  1124 LNNLAALYNEKKHYDKAEELYEKALDIRRRALAPDHPSLAYTVKHLAVLYKKMGKLDKAV 1183

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L+ +  K  +A  ++ R LKIY   +G   
Sbjct:  1184 PLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQMKKQTEALPLYERALKIYEDSFGHMH 1243

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA      G+ E+A ELYK+A+ +
Sbjct:  1244 PRVGETLKNLAVLSYEGGDFEKAAELYKRAMEI 1276

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0048496 "maintenance of organ identity" evidence=IEA

GO:0060027 "convergent extension involved in gastrulation" evidence=IEA

GO:0060993 "kidney morphogenesis" evidence=IEA

GO:0072189 "ureter development" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q6AZT7 nphp3 "Nephrocystin-3" [Xenopus laevis (taxid:8355)]

 Score = 168 (64.2 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 48/213 (22%), Positives = 101/213 (47%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    +    L+ + + Y    +L+    F++  L+M   ++ +   D P     
Sbjct:  1054 EELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGA---DHPDCAQS 1110

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             + ++ ++Y+  + Y+K+  +Y+R +++           L  ++  +A +    G+  KAV
Sbjct:  1111 INNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAV 1170

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L+ +  K  DA  ++ R +KIY    G   
Sbjct:  1171 PLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDALPLYERAMKIYEDSLGRMH 1230

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA  +   G+ E+A ELYK+A+ +
Sbjct:  1231 PRVGETLKNLAVLRYEEGDYEKAAELYKRAMEI 1263

GO:0005929 "cilium" evidence=ISS

GO:0060027 "convergent extension involved in gastrulation" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IMP

MGI|MGI:1921275 Nphp3 "nephronophthisis 3 (adolescent)" [Mus musculus (taxid:10090)]

 Score = 165 (63.1 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 52/213 (24%), Positives = 97/213 (45%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    E    L+ + + Y    +L+    F++  L+M   +   L  D P     
Sbjct:  1076 EELTLGKDKPENARTLNELGVLYFLQNNLETAEQFLKRSLEMRERV---LGPDHPDCAQS 1132

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             L ++ ++ +  + YEK+  +Y+R +++           L  ++  +A +    G+  KAV
Sbjct:  1133 LNNLAALCNEKKQYEKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKTGKVDKAV 1192

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L  +  K  +A  ++ R LKIY    G   
Sbjct:  1193 PLYELAVEIRQKSFGPKHPSVATALVNLAVLHSQMKKHSEALPLYERALKIYEDSLGRMH 1252

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA      GN E+A ELYK+A+ +
Sbjct:  1253 PRVGETLKNLAVLSYEEGNFEKAAELYKRAMEI 1285

GO:0001822 "kidney development" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003283 "atrial septum development" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005929 "cilium" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=ISO;IMP

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0030324 "lung development" evidence=ISO

GO:0030814 "regulation of cAMP metabolic process" evidence=IMP

GO:0035469 "determination of pancreatic left/right asymmetry" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=ISO

GO:0048496 "maintenance of organ identity" evidence=ISO;IMP

GO:0060027 "convergent extension involved in gastrulation" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0060993 "kidney morphogenesis" evidence=ISO;IMP

GO:0071908 "determination of intestine left/right asymmetry" evidence=ISO

GO:0071909 "determination of stomach left/right asymmetry" evidence=ISO

GO:0071910 "determination of liver left/right asymmetry" evidence=ISO

GO:0072189 "ureter development" evidence=ISO

GO:0072372 "primary cilium" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	510
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	9e-08
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	8e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 13/77 (16%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG 259
           P L A L ++  +   L +Y++++ + ++ + +     G+       +L  +A++  ++G
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLALG 60

Query: 260 RAKKAVEIYHRVITILE 276
              +A+E   + + + E
Sbjct: 61  DYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L +L  +  + G   +A  +  + L++  +  GE+      A+ +LA    A G+ +EA+
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 350 ELYKKALRVIKD 361
           E  +KAL + + 
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
           LA +L  +G   E  ELLE+ L +  +  G++HP     L NLA  Y    ++ EA   L
Sbjct: 11  LALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLALGDYDEALEYL 69

Query: 439 RICLDIMTK 447
              L +   
Sbjct: 70  EKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 470
           HP     L NLA    R  ++ EA  LL   L++  + +G D    +  + +L      L
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALEL-ARELGEDHPETARALNNLARLYLAL 59

Query: 471 NRDKEAEKLVLEALYIRE 488
               EA + + +AL +RE
Sbjct: 60  GDYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 302
            L  +L  +A VL  +G   +A+E+  + + +     G +  +    L +L  L++  G 
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALGD 61

Query: 303 AVDAESVFSRILKIYTK 319
             +A     + L +   
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307
           LL +  +   +G   +A+E Y +    LEL+     A      ++L + + K GK  +A 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKA---LELDPDNADA-----YYNLAAAYYKLGKYEEAL 54

Query: 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
             + + L++              A  +L  A    G  EEA+E Y+KAL +
Sbjct: 55  EDYEKALELDPDNA--------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 390
           A+ +L +     G+ +EA+E Y+KAL +  D +              +LA   + +G+ +
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADA--------YYNLAAAYYKLGKYE 51

Query: 391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
           E  E  E+ L +         P       NL  +Y +   + EA       L++
Sbjct: 52  EALEDYEKALELD--------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
           +  A+ +LA      G+ +EA+EL +KAL + +              +  +LA L   +G
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELAR--ELGEDHPETARALN-NLARLYLALG 60

Query: 388 RGQEGRELLEECL 400
              E  E LE+ L
Sbjct: 61  DYDEALEYLEKAL 73

Length = 78

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494
           + +L   L    R +EAE+L+ EAL IR    G D
Sbjct: 5   LNNLARALRAQGRYEEAEELLEEALAIRRRVLGPD 39

Length = 42

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.8 bits (91), Expect = 0.002
 Identities = 54/270 (20%), Positives = 99/270 (36%), Gaps = 22/270 (8%)

Query: 224 LVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283
           L+   +  +        ++ L+   L +       G          ++  + E     E 
Sbjct: 25  LLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK 84

Query: 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343
           A  +  L +L    +  G  ++A   +   L++  K    +             A    G
Sbjct: 85  ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144

Query: 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403
           + EEA+ELY+KAL +  + N        +    + L  LL  +GR +E  ELLE+ L + 
Sbjct: 145 DYEEALELYEKALELDPELNE-------LAEALLALGALLEALGRYEEALELLEKALKLN 197

Query: 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
                +        LLNL   Y +   + EA       L++      PD+    +   +L
Sbjct: 198 PDDDAEA-------LLNLGLLYLKLGKYEEALEYYEKALELD-----PDNAEALY---NL 242

Query: 464 GITLYHLNRDKEAEKLVLEALYIREIAFGK 493
            + L  L R +EA + + +AL +    +  
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPDLYNL 272

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	510
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.96
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.93
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.92
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.92
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.9
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.9
KOG1126	638	consensus DNA-binding cell division cycle control	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.87
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.86
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.86
KOG1126	638	consensus DNA-binding cell division cycle control	99.85
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.84
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.83
KOG2076	895	consensus RNA polymerase III transcription factor	99.83
PRK04841	903	transcriptional regulator MalT; Provisional	99.83
PLN03218	1060	maturation of RBCL 1; Provisional	99.82
KOG1129	478	consensus TPR repeat-containing protein [General f	99.82
PLN03218	1060	maturation of RBCL 1; Provisional	99.81
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.8
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.8
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.78
KOG1129	478	consensus TPR repeat-containing protein [General f	99.78
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.78
KOG2003	840	consensus TPR repeat-containing protein [General f	99.77
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.76
PRK12370	553	invasion protein regulator; Provisional	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.76
PRK12370	553	invasion protein regulator; Provisional	99.75
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.75
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.75
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.75
KOG2003	840	consensus TPR repeat-containing protein [General f	99.75
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.74
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.73
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.73
PRK11189	296	lipoprotein NlpI; Provisional	99.73
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.72
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.71
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.71
PRK11189	296	lipoprotein NlpI; Provisional	99.71
PRK14574	822	hmsH outer membrane protein; Provisional	99.7
PRK04841	903	transcriptional regulator MalT; Provisional	99.7
PRK14574	822	hmsH outer membrane protein; Provisional	99.7
KOG2076	895	consensus RNA polymerase III transcription factor	99.7
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.69
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.69
KOG1125	579	consensus TPR repeat-containing protein [General f	99.69
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.68
PLN03077	857	Protein ECB2; Provisional	99.65
KOG1125	579	consensus TPR repeat-containing protein [General f	99.65
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.65
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.65
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.64
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.63
PLN03077	857	Protein ECB2; Provisional	99.62
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.61
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.59
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.58
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.57
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.57
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.57
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.57
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.51
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.48
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.48
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.48
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.47
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.46
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.44
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.44
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.42
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.41
PLN02789	320	farnesyltranstransferase	99.4
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.4
PLN02789	320	farnesyltranstransferase	99.4
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.36
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.35
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.34
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.34
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.31
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.28
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.28
PRK15359	144	type III secretion system chaperone protein SscB;	99.27
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.26
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.25
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.25
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.23
PRK15359	144	type III secretion system chaperone protein SscB;	99.22
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.21
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.21
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.2
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.2
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.18
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.18
KOG1585	308	consensus Protein required for fusion of vesicles	99.16
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.15
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.13
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.13
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.12
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.12
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.11
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.11
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.09
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.08
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.07
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.06
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.05
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.05
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.05
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	99.05
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.04
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.01
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.01
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.01
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.01
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.0
KOG0553	304	consensus TPR repeat-containing protein [General f	99.0
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.0
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.99
KOG0553	304	consensus TPR repeat-containing protein [General f	98.96
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.96
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.95
KOG1585	308	consensus Protein required for fusion of vesicles	98.95
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.94
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.94
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.94
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.94
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.89
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.88
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.87
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.79
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.75
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.74
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.74
PF12688	120	TPR_5: Tetratrico peptide repeat	98.72
PF12688	120	TPR_5: Tetratrico peptide repeat	98.71
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.7
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.69
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.68
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.66
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.65
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.65
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.63
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.63
KOG1586	288	consensus Protein required for fusion of vesicles	98.62
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.6
KOG2471	696	consensus TPR repeat-containing protein [General f	98.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.6
PRK10803	263	tol-pal system protein YbgF; Provisional	98.59
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.59
PRK10803	263	tol-pal system protein YbgF; Provisional	98.58
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.57
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.56
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.54
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.53
KOG4555	175	consensus TPR repeat-containing protein [Function	98.52
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.52
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.5
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.47
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.47
KOG1586	288	consensus Protein required for fusion of vesicles	98.45
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.45
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.43
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.42
KOG4555	175	consensus TPR repeat-containing protein [Function	98.4
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.39
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.39
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.38
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.36
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.35
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.35
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.33
PF13512	142	TPR_18: Tetratricopeptide repeat	98.3
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.29
PRK15331	165	chaperone protein SicA; Provisional	98.28
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.28
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.28
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.26
PRK11906	458	transcriptional regulator; Provisional	98.25
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.23
PRK15331	165	chaperone protein SicA; Provisional	98.22
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.21
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.2
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.19
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.19
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.16
PF13512	142	TPR_18: Tetratricopeptide repeat	98.15
PRK11906	458	transcriptional regulator; Provisional	98.15
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.11
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.11
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.08
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.07
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.05
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.03
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.01
KOG4234	271	consensus TPR repeat-containing protein [General f	98.0
KOG4234	271	consensus TPR repeat-containing protein [General f	97.99
KOG2471	696	consensus TPR repeat-containing protein [General f	97.92
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.92
PF13371	73	TPR_9: Tetratricopeptide repeat	97.87
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.87
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.86
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.85
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.84
PF13371	73	TPR_9: Tetratricopeptide repeat	97.84
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.84
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.83
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.83
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.81
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.77
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.77
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.73
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.71
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.69
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.65
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.65
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.65
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.64
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.64
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.59
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.58
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.58
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.58
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.57
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.51
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.5
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.45
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.43
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.41
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.4
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.34
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.33
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.32
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.29
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.25
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.16
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.16
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.11
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.11
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.09
PF13431	34	TPR_17: Tetratricopeptide repeat	97.04
PF13428	44	TPR_14: Tetratricopeptide repeat	97.04
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.03
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.03
PF13428	44	TPR_14: Tetratricopeptide repeat	97.0
PF13431	34	TPR_17: Tetratricopeptide repeat	96.96
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.94
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.93
KOG1463	411	consensus 26S proteasome regulatory complex, subun	96.89
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.87
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.77
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.74
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.7
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.69
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.67
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.66
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.63
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.58
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.52
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.49
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.46
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.44
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.4
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.15
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.14
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.75
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.71
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.63
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.6
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.59
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.48
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.47
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.42
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.36
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.28
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	95.22
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	95.15
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.05
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.01
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.93
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.81
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.64
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.44
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.17
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.16
KOG3783	546	consensus Uncharacterized conserved protein [Funct	94.13
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.04
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.88
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.77
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	93.7
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.56
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	93.4
KOG0687	393	consensus 26S proteasome regulatory complex, subun	93.36
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.26
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	93.15
COG5187	412	RPN7 26S proteasome regulatory complex component,	93.15
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.1
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.91
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.76
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.75
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.29
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.23
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.0
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.96
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.88
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.85
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.83
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.78
KOG2908	380	consensus 26S proteasome regulatory complex, subun	91.65
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.48
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.41
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	91.29
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	91.29
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	91.09
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	90.86
KOG0687	393	consensus 26S proteasome regulatory complex, subun	90.86
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.72
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.69
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.34
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	90.26
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	90.07
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.04
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	90.04
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.89
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	89.87
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.86
KOG0508	615	consensus Ankyrin repeat protein [General function	89.73
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	89.64
COG5187	412	RPN7 26S proteasome regulatory complex component,	89.33
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.16
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	89.05
KOG2581	493	consensus 26S proteasome regulatory complex, subun	89.03
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	89.01
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.97
COG3947	361	Response regulator containing CheY-like receiver a	88.8
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	88.62
PRK10941	269	hypothetical protein; Provisional	88.51
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	88.41
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.31
PRK10941	269	hypothetical protein; Provisional	87.76
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.74
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.65
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	87.15
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	87.09
PRK14707	2710	hypothetical protein; Provisional	86.77
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.76
KOG4014	248	consensus Uncharacterized conserved protein (conta	86.6
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.51
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.48
KOG0508	615	consensus Ankyrin repeat protein [General function	86.32
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	86.3
PF13041	50	PPR_2: PPR repeat family	86.25
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	85.65
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.64
PRK14707	2710	hypothetical protein; Provisional	85.52
PF12854	34	PPR_1: PPR repeat	85.44
KOG2422	665	consensus Uncharacterized conserved protein [Funct	85.13
PF12854	34	PPR_1: PPR repeat	85.12
PF13041	50	PPR_2: PPR repeat family	85.0
COG3947	361	Response regulator containing CheY-like receiver a	84.1
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	83.53
KOG1258	577	consensus mRNA processing protein [RNA processing	83.37
COG2178	204	Predicted RNA-binding protein of the translin fami	83.34
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	83.17
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	82.72
KOG4814	872	consensus Uncharacterized conserved protein [Funct	82.49
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	82.4
KOG4521	1480	consensus Nuclear pore complex, Nup160 component [	81.85
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	81.84
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	81.77
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	81.74
COG4976	287	Predicted methyltransferase (contains TPR repeat)	81.11
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	80.86
KOG3364	149	consensus Membrane protein involved in organellar	80.68
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	80.67
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	80.49
COG4976	287	Predicted methyltransferase (contains TPR repeat)	80.41

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=2.7e-33  Score=259.96  Aligned_cols=311  Identities=28%  Similarity=0.372  Sum_probs=293.3

Q ss_pred             HHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHH
Q 010446          188 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI  267 (510)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  267 (510)
                      ........+...|....+...++..|..+|+|++|+..+++++++..+..+.+++.+......+|.+|..++++.+|+.+
T Consensus       184 ~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~l  263 (508)
T KOG1840|consen  184 LDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNL  263 (508)
T ss_pred             HHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            33334455778888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHH
Q 010446          268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE  347 (510)
Q Consensus       268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  347 (510)
                      |++|+.+.+...|+++|..+.++.+||..|...|++++|..++++|+++.++..+..++.+...+.+++.++...+++++
T Consensus       264 y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee  343 (508)
T KOG1840|consen  264 YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE  343 (508)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 010446          348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR  427 (510)
Q Consensus       348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  427 (510)
                      |..++++++++...  ..+++++.++.++.+||.+|..+|++++|.+++++|+.+.++..+..++.....+++||..|.+
T Consensus       344 a~~l~q~al~i~~~--~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~  421 (508)
T KOG1840|consen  344 AKKLLQKALKIYLD--APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE  421 (508)
T ss_pred             HHHHHHHHHHHHHh--hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH
Confidence            99999999999985  3678888899999999999999999999999999999999999888899999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 010446          428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLL  501 (510)
Q Consensus       428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  501 (510)
                      .+++.+|...|.++..+. +..|+++|++...+.+|+.+|..+|++++|.++.++++...++.+|..++.....
T Consensus       422 ~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~  494 (508)
T KOG1840|consen  422 LKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDE  494 (508)
T ss_pred             hcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHH
Confidence            999999999999999999 8899999999999999999999999999999999999999999999888765543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=9.5e-35  Score=262.60  Aligned_cols=273  Identities=17%  Similarity=0.228  Sum_probs=224.7

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      .|..+.+|.++|.++..+|+...|+..|+++..+.       |....+|.+||.+|...+.|++|+..|.+|+.+     
T Consensus       214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-----  281 (966)
T KOG4626|consen  214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-----  281 (966)
T ss_pred             CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-----
Confidence            44555566677777777777777777777776553       666677888888888888888888888888765     


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                         .|..+.++.++|.+|+.+|..+-|+..|++++++        .|....++++||..+...|+..+|+.+|.+++.+.
T Consensus       282 ---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~  350 (966)
T KOG4626|consen  282 ---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC  350 (966)
T ss_pred             ---CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence               3566777888888888888888888888888876        67778889999999999999999999999998863


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (510)
                              |..+.+++|||.+|..+|.+++|..+|.++++..          +..+.+..+||.+|..+|++++|+..|+
T Consensus       351 --------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~----------p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk  412 (966)
T KOG4626|consen  351 --------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF----------PEFAAAHNNLASIYKQQGNLDDAIMCYK  412 (966)
T ss_pred             --------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC----------hhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence                    4556788899999999999999999999998873          3446677899999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 010446          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (510)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (510)
                      +++.+        .|..+.++.++|..|..+|+.+.|+.+|.+|+.+        +|..+++..+||.+|...|+..+|+
T Consensus       413 ealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI  476 (966)
T KOG4626|consen  413 EALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAI  476 (966)
T ss_pred             HHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHH
Confidence            98886        5778889999999999999999999999999884        7888999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 010446          478 KLVLEALYIR  487 (510)
Q Consensus       478 ~~~~~al~~~  487 (510)
                      ..|++++.+.
T Consensus       477 ~sY~~aLklk  486 (966)
T KOG4626|consen  477 QSYRTALKLK  486 (966)
T ss_pred             HHHHHHHccC
Confidence            9999998855

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-34  Score=260.10  Aligned_cols=307  Identities=19%  Similarity=0.248  Sum_probs=245.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc-----
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL-----  195 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----  195 (510)
                      +-+.+..+...|++++|+.+|+.++++          .|+..+++.++|.++...|+.+.|...|..++++...+     
T Consensus       119 ysn~aN~~kerg~~~~al~~y~~aiel----------~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s  188 (966)
T KOG4626|consen  119 YSNLANILKERGQLQDALALYRAAIEL----------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARS  188 (966)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHhc----------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhc
Confidence            344556666666666666666666665          55566666666666666666666666555555543100     


Q ss_pred             ----------------------CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010446          196 ----------------------KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK  253 (510)
Q Consensus       196 ----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  253 (510)
                                            -...|..+.+|.+||.++..+|+...|+.+|++|+.+        +|....+|.++|.
T Consensus       189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGn  260 (966)
T KOG4626|consen  189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGN  260 (966)
T ss_pred             chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHH
Confidence                                  0011444555677777777777777777777777765        4677888999999


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 010446          254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC  333 (510)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  333 (510)
                      +|...+.+++|+.+|.+|+.+        .|..+.++.++|.+|.++|..+-|+..|++++++        .|....+++
T Consensus       261 V~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~  324 (966)
T KOG4626|consen  261 VYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYN  324 (966)
T ss_pred             HHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHh
Confidence            999999999999999999876        6777888999999999999999999999999884        577888999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010446          334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS  413 (510)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  413 (510)
                      |+|..+-..|+..+|+.+|.+++.+.       +++   +.+.++||.+|.++|++++|..+|++++++        .|.
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL~l~-------p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~  386 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKALRLC-------PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPE  386 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhC-------Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------Chh
Confidence            99999999999999999999999983       334   456799999999999999999999999986        477


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      .+.+.++||.+|.++|++++|+.+|++++.|        .|..++++.++|.+|..+|+...|+++|.+|+.+.
T Consensus       387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n  452 (966)
T KOG4626|consen  387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN  452 (966)
T ss_pred             hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence            7889999999999999999999999999986        68899999999999999999999999999998754

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=2.7e-31  Score=246.64  Aligned_cols=308  Identities=23%  Similarity=0.330  Sum_probs=285.0

Q ss_pred             CCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh-hhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV-DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      +...|....+...++..|...|+|++|+..++.++++. +..+..++.+...+..+|.+|..++++.+|+..|++|+.+.
T Consensus       192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            55678888888889999999999999999999998875 44577889999988889999999999999999999999999


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (510)
Q Consensus       234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (510)
                      +..+|.++|.++.++.+||..|...|++++|..++++|+++.++..+..++.....+.+++.++..++++++|..+++++
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA  351 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 010446          314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  393 (510)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (510)
                      ++++....+++++.++..+.++|.+|...|++++|.+++++++.+.++.  .+..+..+...+.++|..|.+.+++.+|.
T Consensus       352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~--~~~~~~~~~~~l~~la~~~~~~k~~~~a~  429 (508)
T KOG1840|consen  352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL--LGKKDYGVGKPLNQLAEAYEELKKYEEAE  429 (508)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc--ccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence            9999999999999999999999999999999999999999999999874  44556677778899999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHH
Q 010446          394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (510)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (510)
                      ..|.++..+. +..|+++|++...+.+||.+|..+|++++|+++.+.++...+...+..++.....-..++.
T Consensus       430 ~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (508)
T KOG1840|consen  430 QLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD  500 (508)
T ss_pred             HHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence            9999999999 8889999999999999999999999999999999999999998888877776654444443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.96  E-value=2.2e-26  Score=230.26  Aligned_cols=317  Identities=15%  Similarity=0.132  Sum_probs=246.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHh--------
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI--------  191 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------  191 (510)
                      .+.+.+.++...|++++|+..+++++++          .|....++..+|.+|...|++++|+..+..+...        
T Consensus       162 ~~~n~a~~~~~l~~~~~Ai~~~~~al~l----------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~  231 (615)
T TIGR00990       162 YYSNRAACHNALGDWEKVVEDTTAALEL----------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS  231 (615)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH
Confidence            4667788888888888888888888877          7888889999999999999999997655332110        


Q ss_pred             --------------------------------------------------------------------------------
Q 010446          192 --------------------------------------------------------------------------------  191 (510)
Q Consensus       192 --------------------------------------------------------------------------------  191 (510)
                                                                                                      
T Consensus       232 ~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~  311 (615)
T TIGR00990       232 AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE  311 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence                                                                                            


Q ss_pred             -----hhh-c--CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHH
Q 010446          192 -----VDS-L--KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK  263 (510)
Q Consensus       192 -----~~~-~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  263 (510)
                           .+. +  +...|..+.++..+|.++..+|++++|+..+++++++        +|....++..+|.++...|++++
T Consensus       312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~e  383 (615)
T TIGR00990       312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDK  383 (615)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence                 000 0  0112445556778888888889999999998888875        34556778889999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC
Q 010446          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (510)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (510)
                      |+..++++++.        .|....++..+|.++...|++++|+..|++++++        .|.....+.++|.++...|
T Consensus       384 A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g  447 (615)
T TIGR00990       384 AEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEG  447 (615)
T ss_pred             HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCC
Confidence            99999998876        4555778899999999999999999999999885        3555667889999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010446          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (510)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (510)
                      ++++|+..+++++...       |+.   ..++..+|.++...|++++|+..|++++.+..... .........+...+.
T Consensus       448 ~~~eA~~~~~~al~~~-------P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~  516 (615)
T TIGR00990       448 SIASSMATFRRCKKNF-------PEA---PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALA  516 (615)
T ss_pred             CHHHHHHHHHHHHHhC-------CCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHH
Confidence            9999999999998762       333   34568899999999999999999999998753321 111222223333334


Q ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      .+...|++++|+.++++++.+        +|....++..+|.++..+|++++|+.+|++++++.+.
T Consensus       517 ~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       517 LFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence            455579999999999999984        3455567889999999999999999999999988753

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.96  E-value=7.2e-26  Score=226.55  Aligned_cols=317  Identities=16%  Similarity=0.086  Sum_probs=248.5

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (510)
                      ....+...|..++..|+|++|+..|++++..          .|+ +..+.++|.+|...|++++|+..+++++.+.    
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----------~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----  190 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----------KPD-PVYYSNRAACHNALGDWEKVVEDTTAALELD----  190 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence            3445788899999999999999999999986          443 5678999999999999999999999998764    


Q ss_pred             CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH---------------------------------------------
Q 010446          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN---------------------------------------------  231 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------------------------------  231 (510)
                         |....+++.+|.+|..+|++++|+..+..+..                                             
T Consensus       191 ---p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~  267 (615)
T TIGR00990       191 ---PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNY  267 (615)
T ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence               45566789999999999999999765543321                                             


Q ss_pred             ------------------------------------------------HHHHhcC--CCChhHHHHHHHHHHHHhhcCCH
Q 010446          232 ------------------------------------------------VLESRYG--KTSILLVTSLLGMAKVLGSIGRA  261 (510)
Q Consensus       232 ------------------------------------------------~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~  261 (510)
                                                                      .+.....  ...+..+.++..+|.++...|++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~  347 (615)
T TIGR00990       268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH  347 (615)
T ss_pred             HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence                                                            1111111  11345566788889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 010446          262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  341 (510)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  341 (510)
                      ++|+..+++++++        .|....++..+|.++...|++++|+..++++++.        +|....++..+|.++..
T Consensus       348 ~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       348 LEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence            9999999999886        5666788999999999999999999999999875        34445788899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010446          342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  421 (510)
Q Consensus       342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  421 (510)
                      .|++++|+..|++++.+       .|+.   ...+.++|.++...|++++|+..+++++..        .|....++..+
T Consensus       412 ~g~~~~A~~~~~kal~l-------~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~l  473 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDL-------DPDF---IFSHIQLGVTQYKEGSIASSMATFRRCKKN--------FPEAPDVYNYY  473 (615)
T ss_pred             cCCHHHHHHHHHHHHHc-------CccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHH
Confidence            99999999999999887       2333   345688999999999999999999999874        35556788899


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          422 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      |.++...|++++|+..|++++.+.... .+.+......+...+..+...|++++|..++++++.+
T Consensus       474 g~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l  537 (615)
T TIGR00990       474 GELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII  537 (615)
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            999999999999999999999864221 0111122222222333444579999999999999875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.94  E-value=1.8e-23  Score=208.47  Aligned_cols=305  Identities=12%  Similarity=0.033  Sum_probs=248.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .+...+......|++++|+..+++++..          .|..+.++..+|.++...|++++|+..+++++.+.       
T Consensus        78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~----------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-------  140 (656)
T PRK15174         78 LLRRWVISPLASSQPDAVLQVVNKLLAV----------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-------  140 (656)
T ss_pred             HHHHHhhhHhhcCCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence            3566677778899999999999999988          88888899999999999999999999999998764       


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      |....++..+|.++...|++++|+..+++++...     ++++   ..+..++ .+...|++++|+..++++++..    
T Consensus       141 P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-----P~~~---~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~----  207 (656)
T PRK15174        141 SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-----PPRG---DMIATCL-SFLNKSRLPEDHDLARALLPFF----  207 (656)
T ss_pred             CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----CCCH---HHHHHHH-HHHHcCCHHHHHHHHHHHHhcC----
Confidence            3344557889999999999999999999776542     2222   2333443 4788999999999999887651    


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHH----HHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE----AVELYKKA  355 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a  355 (510)
                         .+........++.++...|++++|+..+++++..        +|....++.++|.++...|++++    |+..++++
T Consensus       208 ---~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A  276 (656)
T PRK15174        208 ---ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA  276 (656)
T ss_pred             ---CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence               1122234456788999999999999999999974        34456788899999999999986    89999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (510)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (510)
                      +..       .|+.   ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+
T Consensus       277 l~l-------~P~~---~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~  338 (656)
T PRK15174        277 LQF-------NSDN---VRIVTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAAS  338 (656)
T ss_pred             Hhh-------CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            887       3333   456788999999999999999999999875        3455677888999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 010446          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  491 (510)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  491 (510)
                      ..|++++..        +|........+|.++...|++++|+..|+++++......
T Consensus       339 ~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        339 DEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            999999873        344445566678999999999999999999999865543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.93  E-value=7.1e-23  Score=204.18  Aligned_cols=299  Identities=12%  Similarity=0.072  Sum_probs=248.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +..-+......|++++|+..++..+..          .|..+.++..+|.+....|++++|+..+++++...       |
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~----------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------P  107 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLT----------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------V  107 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHh----------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------C
Confidence            555677889999999999999999987          88889999999999999999999999999998775       4


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ....++..+|.++...|++++|+..+++++.+.        |....++..++.++...|++++|+..+++++..      
T Consensus       108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~------  173 (656)
T PRK15174        108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--------SGNSQIFALHLRTLVLMDKELQAISLARTQAQE------  173 (656)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------
Confidence            445568999999999999999999999999862        445667889999999999999999999987765      


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                        .|.....+..++ .+...|++++|+..+++++...       .+........++.++...|++++|+..+++++..  
T Consensus       174 --~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--  241 (656)
T PRK15174        174 --VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--  241 (656)
T ss_pred             --CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence              233344444443 4788999999999999887641       1111223456688899999999999999999976  


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQE----GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (510)
                           .++.   ..++.++|.++...|++++    |+..|++++.+        .|....++..+|.++...|++++|+.
T Consensus       242 -----~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~  305 (656)
T PRK15174        242 -----GLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIP  305 (656)
T ss_pred             -----CCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence                 3333   4566889999999999986    78999998875        35667889999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      .+++++.+        +|....++..+|.++...|++++|+..|+++++.
T Consensus       306 ~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        306 LLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             HHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999984        4555667789999999999999999999998874

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.93  E-value=5.7e-24  Score=184.22  Aligned_cols=319  Identities=15%  Similarity=0.118  Sum_probs=261.4

Q ss_pred             HHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 010446          168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS  247 (510)
Q Consensus       168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  247 (510)
                      -|.-+++.|++...+.+|+.+++..   .++-..+..+|..+|+.|+..++|++|+++...-+.+.+..  .+....+.+
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvG---TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKs   97 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVG---TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKS   97 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhc---chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccc
Confidence            3566788999999999999999875   33445677789999999999999999999988777666554  223344667


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC--------------------hHHHH
Q 010446          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK--------------------AVDAE  307 (510)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~  307 (510)
                      ..++|+.+...|.|++|+.+..+-+.+.++..  +......+++++|.+|...|+                    ++.|.
T Consensus        98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av  175 (639)
T KOG1130|consen   98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV  175 (639)
T ss_pred             cccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence            78999999999999999999999999988875  445567899999999998876                    45677


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 010446          308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  387 (510)
Q Consensus       308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  387 (510)
                      ++|..-+++.++..  +......++.+||..|+-.|+|+.|+...+.-+.+.++-    .+....-.++.++|.++.-.|
T Consensus       176 ~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef----GDrAaeRRA~sNlgN~hiflg  249 (639)
T KOG1130|consen  176 KFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF----GDRAAERRAHSNLGNCHIFLG  249 (639)
T ss_pred             HHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----hhHHHHHHhhcccchhhhhhc
Confidence            77777777776652  334466789999999999999999999999999998873    344455678899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHH
Q 010446          388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  467 (510)
Q Consensus       388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  467 (510)
                      +++.|+++|+.++.+..++.  +....+...+.||..|.-..++++|+.|+.+-+.|.++.  .+......+++.||..+
T Consensus       250 ~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna~  325 (639)
T KOG1130|consen  250 NFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNAF  325 (639)
T ss_pred             ccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHH
Confidence            99999999999999988874  344556778899999999999999999999999998876  33455678899999999


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 010446          468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTV  503 (510)
Q Consensus       468 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  503 (510)
                      ...|..++|+.+.++.+++..++-.+.....+...+
T Consensus       326 ~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nl  361 (639)
T KOG1130|consen  326 NALGEHRKALYFAELHLRSSLEVNDTSGELTARDNL  361 (639)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhh
Confidence            999999999999999999998875554333344333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=8.2e-22  Score=187.76  Aligned_cols=314  Identities=16%  Similarity=0.128  Sum_probs=244.9

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (510)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (510)
                      ..+...+..+..+...|++++|+..|+++++.          .|....++..+|.++...|++++|+..++.++...   
T Consensus        33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---   99 (389)
T PRK11788         33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV----------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP---   99 (389)
T ss_pred             hhccHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---
Confidence            34445666778888999999999999999987          67778899999999999999999999999887632   


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      .........++..+|.+|...|++++|+..|+++++.        .+....++..++.++...|++++|++.++++++..
T Consensus       100 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (389)
T PRK11788        100 DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG  171 (389)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence            1112233456889999999999999999999998763        24446778899999999999999999999987652


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010446          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (510)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (510)
                      ..   +........+..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++
T Consensus       172 ~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  240 (389)
T PRK11788        172 GD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERV  240 (389)
T ss_pred             CC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            11   111123445778999999999999999999999875        2344567888999999999999999999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (510)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (510)
                      +...       +  .....++..++.+|...|++++|...+++++...        |+. ..+..++.++...|++++|.
T Consensus       241 ~~~~-------p--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~-~~~~~la~~~~~~g~~~~A~  302 (389)
T PRK11788        241 EEQD-------P--EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------PGA-DLLLALAQLLEEQEGPEAAQ  302 (389)
T ss_pred             HHHC-------h--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCc-hHHHHHHHHHHHhCCHHHHH
Confidence            8761       2  2223456789999999999999999999987752        222 23478999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHH
Q 010446          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLY--HLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~  487 (510)
                      ..++++++.        .|+.......++..+.  ..|+..+|+..+++.++..
T Consensus       303 ~~l~~~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~  348 (389)
T PRK11788        303 ALLREQLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ  348 (389)
T ss_pred             HHHHHHHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence            999999884        3444333222333222  2568999999999888643

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.92  E-value=4.6e-22  Score=212.00  Aligned_cols=321  Identities=14%  Similarity=0.096  Sum_probs=222.4

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH--
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL--  201 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--  201 (510)
                      .+..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..|+++++...........  
T Consensus       275 ~G~~~~~~g~~~~A~~~l~~aL~~----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~  344 (1157)
T PRK11447        275 QGLAAVDSGQGGKAIPELQQAVRA----------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES  344 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence            367788999999999999999987          77788999999999999999999999999998765221110000  


Q ss_pred             -----HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446          202 -----LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (510)
Q Consensus       202 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (510)
                           .......+|..+...|++++|+..|+++++..        |....++..+|.++...|++++|+.+|++++++..
T Consensus       345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p  416 (1157)
T PRK11447        345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP  416 (1157)
T ss_pred             HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence                 11123456888999999999999999999862        34456788999999999999999999999987621


Q ss_pred             Hhc----------CCCCc------------------------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          277 LNR----------GTESA------------------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       277 ~~~----------~~~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ...          ....+                        .....+..+|.++...|++++|+..|+++++.      
T Consensus       417 ~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~------  490 (1157)
T PRK11447        417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL------  490 (1157)
T ss_pred             CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence            100          00000                        00112344677778899999999999999885      


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc------------------------cCC---CC-------
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN------------------------YMS---LD-------  368 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------~~~---~~-------  368 (510)
                        .|....++..+|.+|...|++++|+..++++++......                        ...   .+       
T Consensus       491 --~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~  568 (1157)
T PRK11447        491 --DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA  568 (1157)
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence              344456788999999999999999999999876421100                        000   00       


Q ss_pred             ------------------------------ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010446          369 ------------------------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  418 (510)
Q Consensus       369 ------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  418 (510)
                                                    .+.....+..+|.++...|++++|+..|++++..        .|....++
T Consensus       569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~P~~~~a~  640 (1157)
T PRK11447        569 QRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------EPGNADAR  640 (1157)
T ss_pred             HHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence                                          0000123456777777778888888888777764        23444566


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      ..++.+|...|++++|+..+++++..        .|+...++..+|.++...|++++|.++|++++..
T Consensus       641 ~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        641 LGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            66677777777777777666655542        2333344555666666666666666666666553

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.92  E-value=1.4e-22  Score=175.77  Aligned_cols=330  Identities=15%  Similarity=0.149  Sum_probs=262.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      +...+..+++.|++...+.+|+.|++.       +..+. ....+|..+|.+|+..+||++|+++...-+.+.+.+++.-
T Consensus        20 LalEGERLck~gdcraGv~ff~aA~qv-------GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl   92 (639)
T KOG1130|consen   20 LALEGERLCKMGDCRAGVDFFKAALQV-------GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL   92 (639)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHHHh-------cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence            455788899999999999999999987       33232 3455788999999999999999999877666655544432


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCC-------------------
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-------------------  260 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------  260 (510)
                      . -+..--++|+.+-..|.|++|+.+..+-+.+.++.  .+.....++++++|.+|...|+                   
T Consensus        93 G-EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~  169 (639)
T KOG1130|consen   93 G-EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS  169 (639)
T ss_pred             c-cccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence            2 23345789999999999999999999999998876  3344668899999999998875                   


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 010446          261 -AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  339 (510)
Q Consensus       261 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  339 (510)
                       ++.|.++|..-+++.++..  +......++.+||..|+-+|+|+.|+...+.-+.+.++..  +....-.++.++|.++
T Consensus       170 al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~h  245 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCH  245 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhh
Confidence             4556667777777766654  3445567899999999999999999999999999988763  3344667899999999


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 010446          340 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL  419 (510)
Q Consensus       340 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  419 (510)
                      .-.|+++.|+++|++.+.+..+.    .+...-+...+.||..|.-..++++|+.++++-+.|.++..  +......+++
T Consensus       246 iflg~fe~A~ehYK~tl~LAiel----g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~Racw  319 (639)
T KOG1130|consen  246 IFLGNFELAIEHYKLTLNLAIEL----GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACW  319 (639)
T ss_pred             hhhcccHhHHHHHHHHHHHHHHh----cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHH
Confidence            99999999999999999998875    33444456668999999999999999999999999998873  4445667899


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC
Q 010446          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR  472 (510)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  472 (510)
                      .||..|...|..++|+.+.++.+++..+...+..  ...+..++...-...|.
T Consensus       320 SLgna~~alg~h~kAl~fae~hl~~s~ev~D~sg--elTar~Nlsdl~~~lG~  370 (639)
T KOG1130|consen  320 SLGNAFNALGEHRKALYFAELHLRSSLEVNDTSG--ELTARDNLSDLILELGQ  370 (639)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcch--hhhhhhhhHHHHHHhCC
Confidence            9999999999999999999999999887744332  23334555555555554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.91  E-value=1.6e-21  Score=207.23  Aligned_cols=300  Identities=20%  Similarity=0.209  Sum_probs=208.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ...+..+..+...|++++|+.++++++..          .|....++..+|.++...|++++|+..++++....      
T Consensus       568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------  631 (899)
T TIGR02917       568 EPALALAQYYLGKGQLKKALAILNEAADA----------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ------  631 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence            44667788889999999999999998765          55567788999999999999999999999887653      


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                       |.....+..+|.++...|++++|...|+++++..        |....++..++.++...|++++|+.+++.+.+.    
T Consensus       632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  698 (899)
T TIGR02917       632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK--------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ----  698 (899)
T ss_pred             -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence             2223457889999999999999999999988642        333456677777777778888887777766553    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                          .|.....+..+|.++...|++++|+..|++++...     ++.    ..+..++.++...|++++|...+++++..
T Consensus       699 ----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  765 (899)
T TIGR02917       699 ----HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-----PSS----QNAIKLHRALLASGNTAEAVKTLEAWLKT  765 (899)
T ss_pred             ----CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                23345566667777777777777777777777641     111    34556677777777777777777776654


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (510)
                             .+++   ..++..+|.++...|++++|+..|+++++.        .|....++..+|.++...|+ .+|+.++
T Consensus       766 -------~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~  826 (899)
T TIGR02917       766 -------HPND---AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYA  826 (899)
T ss_pred             -------CCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence                   2222   234566777777777777777777776653        23344556666777777777 6677777


Q ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ++++.+        .|.....+..+|.++...|++++|..+|+++++..
T Consensus       827 ~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       827 EKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             HHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            766663        12223344566666777777777777777776643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.91  E-value=1.7e-21  Score=207.71  Aligned_cols=309  Identities=10%  Similarity=0.051  Sum_probs=239.1

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH
Q 010446          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (510)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (510)
                      ...+..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..|+++++....    .+.
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~----~~~  420 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQV----------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG----NTN  420 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHH
Confidence            44567788999999999999999988          6777788999999999999999999999999876421    111


Q ss_pred             H---------------------------------------HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh
Q 010446          202 L---------------------------------------DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI  242 (510)
Q Consensus       202 ~---------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  242 (510)
                      .                                       ...+..+|..+...|++++|+..|+++++..        |
T Consensus       421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P  492 (1157)
T PRK11447        421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--------P  492 (1157)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C
Confidence            0                                       1123346777788899999999999998762        4


Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH--------
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL--------  314 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------  314 (510)
                      ....++..+|.+|...|++++|+..++++++.        .|.....+..++..+...|++++|+..++++.        
T Consensus       493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~  564 (1157)
T PRK11447        493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI  564 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence            44567889999999999999999999999875        34445556666777777777777777665421        


Q ss_pred             -----------------------------HHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010446          315 -----------------------------KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (510)
Q Consensus       315 -----------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (510)
                                                   ...+     .+|.....+..+|.++...|++++|+..|+++++.       
T Consensus       565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-------  632 (1157)
T PRK11447        565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-------  632 (1157)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence                                         1111     12333456788999999999999999999999987       


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (510)
                      .|++   ..++..++.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.+|++++...
T Consensus       633 ~P~~---~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        633 EPGN---ADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            3444   346789999999999999999999987653        34455677889999999999999999999998753


Q ss_pred             HHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                      ...  +.......++..+|.++...|++++|+.+|++++.
T Consensus       702 ~~~--~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        702 KSQ--PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             ccC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            110  11112345667789999999999999999999985

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.90  E-value=9.4e-21  Score=201.31  Aligned_cols=306  Identities=17%  Similarity=0.185  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .+...+..+...|++++|+..+++++..          .|....++..++.++...|++++|...++++....       
T Consensus       501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------  563 (899)
T TIGR02917       501 AAANLARIDIQEGNPDDAIQRFEKVLTI----------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-------  563 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence            3556667777777777777777777765          44555666666666666777777776666665432       


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      |.....+..++..+...|++++|+..++++++..        |.....+..+|.++...|++++|+..++++++.     
T Consensus       564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----  630 (899)
T TIGR02917       564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-----  630 (899)
T ss_pred             ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            1112234455555555566666655555554321        122334555555555555555555555555543     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH--------------------------cCCCChHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV--------------------------YGENDGRVGMAMC  333 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~~~~~~~~~~~~  333 (510)
                         .|.....+..+|.++...|++++|...++++++.....                          .....|.....+.
T Consensus       631 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  707 (899)
T TIGR02917       631 ---QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE  707 (899)
T ss_pred             ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence               22233444555555555555555555555544321000                          0001222334556


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010446          334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS  413 (510)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  413 (510)
                      .+|.++...|++++|+..|++++..       .++.    ..+..++.++...|++++|...+++++..        .|.
T Consensus       708 ~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~  768 (899)
T TIGR02917       708 LEGDLYLRQKDYPAAIQAYRKALKR-------APSS----QNAIKLHRALLASGNTAEAVKTLEAWLKT--------HPN  768 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhh-------CCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC
Confidence            6677777777777777777777665       2222    23456777777777777777777776653        344


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      ...++..+|.+|...|++++|+..|+++++.        .|....++..++.++...|+ .+|+.++++++++
T Consensus       769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL  832 (899)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence            4567788888888888888888888888873        34455677888888888888 7788888888764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=9.3e-21  Score=167.97  Aligned_cols=330  Identities=14%  Similarity=0.102  Sum_probs=248.6

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (510)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (510)
                      ......+-+.|..++..|+|++|+.+|.+|+++          .|+.+..|.+++.||...|+|++.++...+++++.  
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l----------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--  179 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL----------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--  179 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc----------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--
Confidence            344556778899999999999999999999998          66668899999999999999999999999998775  


Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHH------------------HHHHHH-----HHHhc--------------
Q 010446          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVY------------------QRVINV-----LESRY--------------  237 (510)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~~-----~~~~~--------------  237 (510)
                           |....+++..+..+...|++++|+.-.                  ++.+..     ..+.+              
T Consensus       180 -----P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi  254 (606)
T KOG0547|consen  180 -----PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFI  254 (606)
T ss_pred             -----cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence                 788888999999999999998886432                  222211     00000              


Q ss_pred             -----------------------------------------------------------CC---C--ChhHHHHHHHHHH
Q 010446          238 -----------------------------------------------------------GK---T--SILLVTSLLGMAK  253 (510)
Q Consensus       238 -----------------------------------------------------------~~---~--~~~~~~~~~~la~  253 (510)
                                                                                 ..   +  -...+.++...|.
T Consensus       255 ~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt  334 (606)
T KOG0547|consen  255 ASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT  334 (606)
T ss_pred             HHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence                                                                       00   0  0123556666777


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcC--------------------------CCCcchHHHHHHHHHHHHHcCChHHHH
Q 010446          254 VLGSIGRAKKAVEIYHRVITILELNRG--------------------------TESADLVLPLFSLGSLFIKEGKAVDAE  307 (510)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~  307 (510)
                      .++..|++..|...++.++.+......                          .-+|....+|+..|.++.-++++++|+
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~  414 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI  414 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence            778888888888887777764321110                          124556778888888888889999999


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 010446          308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  387 (510)
Q Consensus       308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  387 (510)
                      .-|++++.+        +|..+.++..++...+++++++++...|+++...+...          ..++...|.++..++
T Consensus       415 aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~----------~Evy~~fAeiLtDqq  476 (606)
T KOG0547|consen  415 ADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC----------PEVYNLFAEILTDQQ  476 (606)
T ss_pred             HHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----------chHHHHHHHHHhhHH
Confidence            999998875        57778888889999999999999999999988875332          345677899999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHH
Q 010446          388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  466 (510)
Q Consensus       388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  466 (510)
                      ++++|++.|..++.+.....+- +.. +..+..-|.+ ..-.+++.+|+.++++|+++        +|..-.++..||.+
T Consensus       477 qFd~A~k~YD~ai~LE~~~~~~-~v~-~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~  546 (606)
T KOG0547|consen  477 QFDKAVKQYDKAIELEPREHLI-IVN-AAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQF  546 (606)
T ss_pred             hHHHHHHHHHHHHhhccccccc-ccc-chhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHH
Confidence            9999999999999875442110 111 1112222222 22348999999999999985        56667789999999


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHH
Q 010446          467 LYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       467 ~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      ..++|+.++|+++|+++..+.+.
T Consensus       547 ~lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  547 ELQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988765

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.1e-21  Score=180.78  Aligned_cols=294  Identities=15%  Similarity=0.125  Sum_probs=230.6

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (510)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (510)
                      ......-+..+|+..|++ +.         ....+...++..+|..|+.+++|++|..+|+.+.+...-.-++       
T Consensus       327 ~~~~s~y~~~~A~~~~~k-lp---------~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~-------  389 (638)
T KOG1126|consen  327 YRSLSQYNCREALNLFEK-LP---------SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG-------  389 (638)
T ss_pred             HHHHHHHHHHHHHHHHHh-hH---------HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------
Confidence            334455566777777777 32         1255666899999999999999999999999987664221111       


Q ss_pred             HHHHHHHHHhhhcHHHHHHHH-HHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010446          206 LLHMGSMYSTLENYEKSMLVY-QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (510)
                      .-....+++...+-- ++.++ +..++        .++....+|..+|++|..+++++.|++++++|+.+        +|
T Consensus       390 meiyST~LWHLq~~v-~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp  452 (638)
T KOG1126|consen  390 MEIYSTTLWHLQDEV-ALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DP  452 (638)
T ss_pred             hhHHHHHHHHHHhhH-HHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CC
Confidence            111222222222211 12222 22222        23555678999999999999999999999999997        67


Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (510)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (510)
                      ..+.+|..+|.-+....++|.|..+|++|+.+        +|..-.+|+.+|.+|.++++++.|+-+|++|+++      
T Consensus       453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I------  518 (638)
T KOG1126|consen  453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI------  518 (638)
T ss_pred             ccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC------
Confidence            78899999999999999999999999999985        5667789999999999999999999999999998      


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                       .|..   ..+...+|.++.+.|+.++|+.+|++|+.+        +|......+..|.++...+++++|+..+++..++
T Consensus       519 -NP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  519 -NPSN---SVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKEL  586 (638)
T ss_pred             -Cccc---hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence             3333   334577999999999999999999999875        3444566778999999999999999999988775


Q ss_pred             HHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                              .|+...++..+|.+|...|+.+.|+..|.-|.++.
T Consensus       587 --------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  587 --------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             --------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence                    46777889999999999999999999999998865

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=2.5e-20  Score=177.61  Aligned_cols=277  Identities=18%  Similarity=0.135  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (510)
                      ....+..|..+...|++++|+..+++++...       |....++..+|.++...|++++|+..+++++...    ....
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~  103 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTR  103 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCH
Confidence            3345667888899999999999999998753       4445668899999999999999999999887621    1111


Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      .....++..+|.+|...|++++|+.+++++++.        .+....++..++.++...|++++|+..++++++....  
T Consensus       104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--  173 (389)
T PRK11788        104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--  173 (389)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC--
Confidence            234467899999999999999999999999864        3445678899999999999999999999998764211  


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (510)
                       +........+..+|.++...|++++|+.+++++++..       ++.   ..++..+|.++...|++++|+.++++++.
T Consensus       174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~  242 (389)
T PRK11788        174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-------PQC---VRASILLGDLALAQGDYAAAIEALERVEE  242 (389)
T ss_pred             -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-------cCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             1112244567789999999999999999999998862       222   34667899999999999999999999886


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (510)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (510)
                      ..       ......++..++.+|...|++++|...+++++..        +|+. ..+..++.++...|++++|...++
T Consensus       243 ~~-------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~-~~~~~la~~~~~~g~~~~A~~~l~  306 (389)
T PRK11788        243 QD-------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGA-DLLLALAQLLEEQEGPEAAQALLR  306 (389)
T ss_pred             HC-------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCc-hHHHHHHHHHHHhCCHHHHHHHHH
Confidence            42       1223456788999999999999999999998874        2222 234789999999999999999999


Q ss_pred             HHHHH
Q 010446          482 EALYI  486 (510)
Q Consensus       482 ~al~~  486 (510)
                      ++++.
T Consensus       307 ~~l~~  311 (389)
T PRK11788        307 EQLRR  311 (389)
T ss_pred             HHHHh
Confidence            99875

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1.8e-19  Score=172.60  Aligned_cols=333  Identities=16%  Similarity=0.132  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIE-EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (510)
                      .....+..|+.+..+|+|++|..+|.+++..          .++ ....+..+|..|+..|+++.|...|+++....   
T Consensus       306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~---  372 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA----------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL---  372 (1018)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----------CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC---
Confidence            3444777888888888888888888887765          222 35566778888888888888888888777654   


Q ss_pred             CCCchHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010446          196 KDDEPLLDAILLHMGSMYSTLE----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV  271 (510)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  271 (510)
                          |.....+..+|.+|...+    ..+.|..+..++++.        .|....++..++.++....-+. ++.+|..|
T Consensus       373 ----p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d~~~-sL~~~~~A  439 (1018)
T KOG2002|consen  373 ----PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTDPWA-SLDAYGNA  439 (1018)
T ss_pred             ----cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcChHH-HHHHHHHH
Confidence                444445667777777665    445555555555543        2555778889998887655554 49999999


Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHHCCCHHHHH
Q 010446          272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--GRVGMAMCSLAHAKCANGNAEEAV  349 (510)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~  349 (510)
                      +.+.......   .-...++++|..++..|++.+|...|.+|+..+......+.  .......+|+|.++...++++.|.
T Consensus       440 ~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~  516 (1018)
T KOG2002|consen  440 LDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE  516 (1018)
T ss_pred             HHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence            9988776533   34678999999999999999999999999988553322222  112345677888887777777777


Q ss_pred             HHHHHHHHHHHh---------------------------hccCCCCChHH------------------------------
Q 010446          350 ELYKKALRVIKD---------------------------SNYMSLDDSIM------------------------------  372 (510)
Q Consensus       350 ~~~~~al~~~~~---------------------------~~~~~~~~~~~------------------------------  372 (510)
                      +.|...+.....                           .......++..                              
T Consensus       517 e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~  596 (1018)
T KOG2002|consen  517 EMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST  596 (1018)
T ss_pred             HHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence            777765542110                           00000111110                              


Q ss_pred             ---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          373 ---ENMRIDLAELLHIV-----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       373 ---~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                         ..+...||+++...     .+.+.+...+++|++++.+.+ ..+|....+-+.+|.++...|++.+|...|.++.+-
T Consensus       597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL-~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa  675 (1018)
T KOG2002|consen  597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL-RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA  675 (1018)
T ss_pred             CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH-hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence               11223455554432     122445556666666665554 245666667777777777778888887777777663


Q ss_pred             HHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ..        +...+|.++|.||..+|+|..|++.|+.++..+
T Consensus       676 ~~--------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf  710 (1018)
T KOG2002|consen  676 TS--------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF  710 (1018)
T ss_pred             Hh--------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            21        234567888888888888888888888887755

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.87  E-value=1.5e-18  Score=177.20  Aligned_cols=318  Identities=11%  Similarity=0.008  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +...+..+...|++++|+..+++++..          .|..+.++..++.++...|++++|+..+++++...       |
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-------P  114 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSL----------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-------P  114 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------C
Confidence            566788899999999999999999987          77778888999999999999999999999988764       3


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHH----------
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR----------  270 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------  270 (510)
                      .... +..+|.++...|++++|+..++++++..        |....++..++.++...|..++|+..+++          
T Consensus       115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~  185 (765)
T PRK10049        115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD  185 (765)
T ss_pred             CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence            3344 7789999999999999999999999863        34455666778888888888877755552          


Q ss_pred             -----------------------------HHHHHHHhcC--CCC----cchHHHHHH-HHHHHHHcCChHHHHHHHHHHH
Q 010446          271 -----------------------------VITILELNRG--TES----ADLVLPLFS-LGSLFIKEGKAVDAESVFSRIL  314 (510)
Q Consensus       271 -----------------------------al~~~~~~~~--~~~----~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al  314 (510)
                                                   |++.++....  +..    +....+... ++ .+...|++++|+..|++++
T Consensus       186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll  264 (765)
T PRK10049        186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLK  264 (765)
T ss_pred             HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhh
Confidence                                         2222211110  111    122222222 34 3467799999999999987


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHHHHcCChHHHH
Q 010446          315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGR  393 (510)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~  393 (510)
                      +.     ++..|..+..+  +|.+|...|++++|+..|+++++.       .+.. .........++.++...|++++|+
T Consensus       265 ~~-----~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~-------~p~~~~~~~~~~~~L~~a~~~~g~~~eA~  330 (765)
T PRK10049        265 AE-----GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYH-------PETIADLSDEELADLFYSLLESENYPGAL  330 (765)
T ss_pred             cc-----CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc-------CCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence            64     22234443333  588999999999999999998764       2222 111234466788889999999999


Q ss_pred             HHHHHHHHHHHHh---h--CCCCh--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHH
Q 010446          394 ELLEECLLITEKY---K--GKEHP--SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  466 (510)
Q Consensus       394 ~~~~~al~~~~~~---~--~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  466 (510)
                      .+++++.......   .  ....|  ....++..+|.++...|++++|++.+++++..        .|.....+..+|.+
T Consensus       331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l  402 (765)
T PRK10049        331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASV  402 (765)
T ss_pred             HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            9999887652110   0  00112  23456778899999999999999999998874        45556788999999


Q ss_pred             HHhcCChHHHHHHHHHHHHHH
Q 010446          467 LYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       467 ~~~~g~~~~A~~~~~~al~~~  487 (510)
                      +...|++++|++.+++++++.
T Consensus       403 ~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        403 LQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             HHhcCCHHHHHHHHHHHHhhC
Confidence            999999999999999988854

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.2e-18  Score=167.20  Aligned_cols=305  Identities=19%  Similarity=0.224  Sum_probs=245.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHH
Q 010446          132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGS  211 (510)
Q Consensus       132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (510)
                      ..+..+...+.++...          .+..+.++..|+..++..|+|..+..+...++...    ...+..+..++.+|.
T Consensus       250 ~s~~~~~~ll~~ay~~----------n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t----~~~~~~aes~Y~~gR  315 (1018)
T KOG2002|consen  250 DSYKKGVQLLQRAYKE----------NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT----ENKSIKAESFYQLGR  315 (1018)
T ss_pred             HHHHHHHHHHHHHHhh----------cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHH
Confidence            3456666666666655          77778899999999999999999999998887764    344677888999999


Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 010446          212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  291 (510)
Q Consensus       212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  291 (510)
                      +|..+|+|++|..+|.+++...     ++  ...-.+..+|++|...|+++.|..+|++.++.        .|....+..
T Consensus       316 s~Ha~Gd~ekA~~yY~~s~k~~-----~d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~  380 (1018)
T KOG2002|consen  316 SYHAQGDFEKAFKYYMESLKAD-----ND--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMK  380 (1018)
T ss_pred             HHHhhccHHHHHHHHHHHHccC-----CC--CccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHH
Confidence            9999999999999999998752     12  23566889999999999999999999999886        566678888


Q ss_pred             HHHHHHHHcC----ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010446          292 SLGSLFIKEG----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (510)
Q Consensus       292 ~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (510)
                      .||.+|...+    ..++|..+..++++.        .|....+|..++.++.... ...++.+|.+|+.+.....  .+
T Consensus       381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~--~~  449 (1018)
T KOG2002|consen  381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKG--KQ  449 (1018)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcC--CC
Confidence            8999998876    456666666666653        3667789999999887654 4455999999998887641  22


Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (510)
                         .-...++++|..++..|++.+|...+.+|+.........+.  .......+++|.++...++++.|.+.|...+.  
T Consensus       450 ---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--  524 (1018)
T KOG2002|consen  450 ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--  524 (1018)
T ss_pred             ---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--
Confidence               22456799999999999999999999999988553322222  12345688999999999999999999999887  


Q ss_pred             HHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                            .||..+.++..+|......++..+|..++..++.+-
T Consensus       525 ------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d  560 (1018)
T KOG2002|consen  525 ------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID  560 (1018)
T ss_pred             ------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence                  589999999999988888899999999999998754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.86  E-value=6.4e-19  Score=179.95  Aligned_cols=269  Identities=15%  Similarity=0.028  Sum_probs=220.5

Q ss_pred             Chh--HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 010446          158 GIE--EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES  235 (510)
Q Consensus       158 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  235 (510)
                      .|.  .+.++..+|.++.. |++.+|+..+.++....    ++   .. ....+|..+...|++++|+..|+++...   
T Consensus       471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~----Pd---~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~---  538 (987)
T PRK09782        471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ----PD---AW-QHRAVAYQAYQVEDYATALAAWQKISLH---  538 (987)
T ss_pred             CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC----Cc---hH-HHHHHHHHHHHCCCHHHHHHHHHHHhcc---
Confidence            455  78899999999987 89999999998887654    22   11 2556777778999999999999987542   


Q ss_pred             hcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          236 RYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  315 (510)
Q Consensus       236 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  315 (510)
                         +  +. ...+..+|.++...|++++|+.+++++++.        .|.....+..++......|++++|+..++++++
T Consensus       539 ---~--p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~  604 (987)
T PRK09782        539 ---D--MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN  604 (987)
T ss_pred             ---C--CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence               1  11 234678899999999999999999999875        244445555666667778999999999999998


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 010446          316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  395 (510)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  395 (510)
                      .        .|. ...+.++|.++.+.|++++|+..+++++..       .|+++   .++.++|.++...|++++|+..
T Consensus       605 l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-------~Pd~~---~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        605 I--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-------EPNNS---NYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             h--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHHHCCCHHHHHHH
Confidence            5        233 578899999999999999999999999988       34443   4678999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHH
Q 010446          396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  475 (510)
Q Consensus       396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  475 (510)
                      |++++++        .|....++.++|.++...|++++|+..|++++++        .|....+....|.+.....+++.
T Consensus       666 l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~  729 (987)
T PRK09782        666 LERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRR  729 (987)
T ss_pred             HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHH
Confidence            9999885        4566788999999999999999999999999984        46667777888888888888888


Q ss_pred             HHHHHHHHHHHH
Q 010446          476 AEKLVLEALYIR  487 (510)
Q Consensus       476 A~~~~~~al~~~  487 (510)
                      |.+.+.++..+.
T Consensus       730 a~~~~~r~~~~~  741 (987)
T PRK09782        730 LHEEVGRRWTFS  741 (987)
T ss_pred             HHHHHHHHhhcC
Confidence            888888877654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.86  E-value=2.9e-18  Score=175.21  Aligned_cols=305  Identities=10%  Similarity=0.014  Sum_probs=232.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC---hHHH-------------
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD---LKFV-------------  181 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A-------------  181 (510)
                      ...+...+......|++++|..+++++...       ..+..........++.+|...+.   ..++             
T Consensus       376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  448 (987)
T PRK09782        376 LTRLDQLTWQLMQNGQSREAADLLLQRYPF-------QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR  448 (987)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhcCC-------CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence            344566667789999999999999998863       01011122233366666666554   3333             


Q ss_pred             ---------HHHHHHHHHhhhhcCCCchH--HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010446          182 ---------QSLLDMMSGIVDSLKDDEPL--LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (510)
Q Consensus       182 ---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (510)
                               ...+..+....    ...|.  ...+++++|.++.. |++.+|+..+.+++...     ++    ......
T Consensus       449 ~~~~~~~~~~~~~~~~~~al----~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd----~~~~L~  514 (987)
T PRK09782        449 QWQSQLPGIADNCPAIVRLL----GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PD----AWQHRA  514 (987)
T ss_pred             HHHhhhhhhhhhHHHHHHhc----ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----Cc----hHHHHH
Confidence                     22233332222    23233  56678999999987 89999999999988753     22    123566


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (510)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (510)
                      +|.++...|++++|+..+++++..        .+. ...+..+|.++...|++++|+.+++++++.        .|....
T Consensus       515 lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~  577 (987)
T PRK09782        515 VAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNA  577 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHH
Confidence            777888999999999999987543        121 234678899999999999999999999874        233334


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (510)
                      .+..++......|++++|+..++++++.       .|+    ...+.++|.++.+.|++++|+..|++++.+        
T Consensus       578 l~~~La~~l~~~Gr~~eAl~~~~~AL~l-------~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------  638 (987)
T PRK09782        578 LYWWLHAQRYIPGQPELALNDLTRSLNI-------APS----ANAYVARATIYRQRHNVPAAVSDLRAALEL--------  638 (987)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence            4555666677789999999999999987       332    356789999999999999999999999985        


Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      .|....++.++|.++...|++++|+..|++++++        +|....++.++|.++...|++++|+.+|++++++.
T Consensus       639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            4666688999999999999999999999999984        46667888999999999999999999999999866

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=4.8e-18  Score=173.42  Aligned_cols=320  Identities=10%  Similarity=-0.020  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ....+..+...|++++|+..++++++.          .|..+. +..+|.++...|++++|+..+++++...       |
T Consensus        86 ~~~la~~l~~~g~~~eA~~~l~~~l~~----------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P  147 (765)
T PRK10049         86 QRGLILTLADAGQYDEALVKAKQLVSG----------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------P  147 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------C
Confidence            456777889999999999999999987          777777 8899999999999999999999998875       3


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHH---------------------------------------HHHHHHHhcC--C
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQR---------------------------------------VINVLESRYG--K  239 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------------------------------------al~~~~~~~~--~  239 (510)
                      ....++..++.++...|..++|+..+++                                       |++.++....  +
T Consensus       148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~  227 (765)
T PRK10049        148 QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH  227 (765)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence            3334456677777777777766655542                                       2221111110  1


Q ss_pred             C----ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          240 T----SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  315 (510)
Q Consensus       240 ~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  315 (510)
                      .    .+....+.......+...|++++|+..|+++++.     ++..|..+.  ..+|.+|...|++++|+..|++++.
T Consensus       228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~  300 (765)
T PRK10049        228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-----GQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFY  300 (765)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhh
Confidence            1    1222333333223446779999999999998765     112243333  3368899999999999999999876


Q ss_pred             HHHHHcCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh------ccCCCCChHHHHHHHHHHHHHHHcCC
Q 010446          316 IYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS------NYMSLDDSIMENMRIDLAELLHIVGR  388 (510)
Q Consensus       316 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~~~~~la~~~~~~g~  388 (510)
                      .     .+..+ ........++.++...|++++|..+++++.......      ....|+ +....++..+|.++...|+
T Consensus       301 ~-----~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~-~~~~~a~~~~a~~l~~~g~  374 (765)
T PRK10049        301 H-----PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN-DDWLQGQSLLSQVAKYSND  374 (765)
T ss_pred             c-----CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC-chHHHHHHHHHHHHHHcCC
Confidence            3     12221 113456677778899999999999999988763210      000111 1233466789999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH
Q 010446          389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  468 (510)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  468 (510)
                      +++|+..+++++..        .|.....+..+|.++...|++++|+..+++++.+        .|+....+..+|.++.
T Consensus       375 ~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al  438 (765)
T PRK10049        375 LPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTAL  438 (765)
T ss_pred             HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHH
Confidence            99999999998875        3555678999999999999999999999999984        4666678889999999


Q ss_pred             hcCChHHHHHHHHHHHHHH
Q 010446          469 HLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       469 ~~g~~~~A~~~~~~al~~~  487 (510)
                      ..|++++|...++++++..
T Consensus       439 ~~~~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        439 DLQEWRQMDVLTDDVVARE  457 (765)
T ss_pred             HhCCHHHHHHHHHHHHHhC
Confidence            9999999999999998754

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.9e-18  Score=152.58  Aligned_cols=278  Identities=17%  Similarity=0.139  Sum_probs=218.6

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      -+.....-...|.+...+.|+++|+..|+...+..       |....-+....++++-..+-.+---+.+.+..+     
T Consensus       258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-------PYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i-----  325 (559)
T KOG1155|consen  258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-------PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI-----  325 (559)
T ss_pred             CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh-----
Confidence            44455566677888889999999999998876531       322222333344444443323222222333332     


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                         +.-...+...+|+.|...++.++|+.+|++|+++        +|....++..+|.-|..+.+...|+..|++|+++ 
T Consensus       326 ---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-  393 (559)
T KOG1155|consen  326 ---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-  393 (559)
T ss_pred             ---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-
Confidence               1223455667899999999999999999999998        6778899999999999999999999999999997 


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (510)
                             .|..-.+|+.||..|.-++-+.=|+-+|++|...       .|.++   .+|..||.+|.+.++.++|+.+|.
T Consensus       394 -------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-------kPnDs---Rlw~aLG~CY~kl~~~~eAiKCyk  456 (559)
T KOG1155|consen  394 -------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-------KPNDS---RLWVALGECYEKLNRLEEAIKCYK  456 (559)
T ss_pred             -------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-------CCCch---HHHHHHHHHHHHhccHHHHHHHHH
Confidence                   4666789999999999999999999999999987       44454   356789999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 010446          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (510)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (510)
                      +++....        ....++..||.+|.+.++..+|..+|++.++.. ...|...+.+..+...|+.-+.+.+++++|.
T Consensus       457 rai~~~d--------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As  527 (559)
T KOG1155|consen  457 RAILLGD--------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS  527 (559)
T ss_pred             HHHhccc--------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence            9987531        235788999999999999999999999999976 3345567778888888999999999999999


Q ss_pred             HHHHHHHH
Q 010446          478 KLVLEALY  485 (510)
Q Consensus       478 ~~~~~al~  485 (510)
                      .+..+++.
T Consensus       528 ~Ya~~~~~  535 (559)
T KOG1155|consen  528 YYATLVLK  535 (559)
T ss_pred             HHHHHHhc
Confidence            98777664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=6.5e-20  Score=169.26  Aligned_cols=265  Identities=17%  Similarity=0.219  Sum_probs=215.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +...|+.|+..++|++|..+|+.+-+.          .|....-.-....+++...+- -++.++-+  .+.    +..|
T Consensus       356 l~q~GrayFEl~~Y~~a~~~F~~~r~~----------~p~rv~~meiyST~LWHLq~~-v~Ls~Laq--~Li----~~~~  418 (638)
T KOG1126|consen  356 LSQLGRAYFELIEYDQAERIFSLVRRI----------EPYRVKGMEIYSTTLWHLQDE-VALSYLAQ--DLI----DTDP  418 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccccccchhHHHHHHHHHHhh-HHHHHHHH--HHH----hhCC
Confidence            566789999999999999999988766          444444444444444444332 22233322  111    2234


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      .....|..+|++|.-+++++.|++.|++|+++        +|..+.+|..+|.-+....++++|..+|++|+..      
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~------  484 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV------  484 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC------
Confidence            44456899999999999999999999999986        4666888999999999999999999999999987      


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                        .|..-.+|+.+|.+|.++++++.|+-+|++|+++        +|........+|.++.+.|+.++|+.++++|+.+. 
T Consensus       485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-  553 (638)
T KOG1126|consen  485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-  553 (638)
T ss_pred             --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-
Confidence              5667899999999999999999999999999986        56667788889999999999999999999999872 


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (510)
                            +.++.   ..+..|.++...+++++|+..+++..++        .|+...++..+|.+|.+.|+.+.|+..|.-
T Consensus       554 ------~kn~l---~~~~~~~il~~~~~~~eal~~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~  616 (638)
T KOG1126|consen  554 ------PKNPL---CKYHRASILFSLGRYVEALQELEELKEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSW  616 (638)
T ss_pred             ------CCCch---hHHHHHHHHHhhcchHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence                  33332   3478999999999999999999987765        467788999999999999999999999998


Q ss_pred             HHHH
Q 010446          441 CLDI  444 (510)
Q Consensus       441 al~~  444 (510)
                      |.++
T Consensus       617 A~~l  620 (638)
T KOG1126|consen  617 ALDL  620 (638)
T ss_pred             HhcC
Confidence            8874

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.2e-18  Score=157.77  Aligned_cols=280  Identities=15%  Similarity=0.187  Sum_probs=228.7

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (510)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (510)
                      ......+.+...+..++..+++.+..+..+..++.          +|-+..++...-.++...|+..+-..+-.++.   
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----------dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV---  305 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----------DPFHLPCLPLHIACLYELGKSNKLFLLSHKLV---  305 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----------CCCCcchHHHHHHHHHHhcccchHHHHHHHHH---
Confidence            33455666888899999999999999999998877          55555554443338888887665444333333   


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010446          193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (510)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (510)
                          +..|..+..|+.+|..|...|++.+|..+|.++..+        ++..+.+|...|..+...|+.++|+..|..|-
T Consensus       306 ----~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa  373 (611)
T KOG1173|consen  306 ----DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA  373 (611)
T ss_pred             ----HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHH
Confidence                333666667999999999999999999999999775        35667889999999999999999999999998


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010446          273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY  352 (510)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  352 (510)
                      ++...        .......+|.-|..+++++-|..+|.+|+.++        |.....+..+|.+.+..+.+.+|..+|
T Consensus       374 rl~~G--------~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f  437 (611)
T KOG1173|consen  374 RLMPG--------CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYF  437 (611)
T ss_pred             HhccC--------CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHH
Confidence            88533        22345568889999999999999999999974        444467888999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHH
Q 010446          353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV  432 (510)
Q Consensus       353 ~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  432 (510)
                      +.++...+..   .+....+.-++.+||.++.+++++++|+.++++++.+        .|..+.++..+|-+|..+|+++
T Consensus       438 ~~~l~~ik~~---~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld  506 (611)
T KOG1173|consen  438 QKALEVIKSV---LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLD  506 (611)
T ss_pred             HHHHHHhhhc---cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChH
Confidence            9999777664   3344456667899999999999999999999999986        3556688899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 010446          433 EAERLLRICLDI  444 (510)
Q Consensus       433 ~A~~~~~~al~~  444 (510)
                      .|+++|.+++.+
T Consensus       507 ~Aid~fhKaL~l  518 (611)
T KOG1173|consen  507 KAIDHFHKALAL  518 (611)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999985

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=3.5e-18  Score=150.87  Aligned_cols=268  Identities=16%  Similarity=0.176  Sum_probs=213.2

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      .|...+.+.|+++|+..|+...+.          +|....-+....++++-..+-.+-.-+.+.+..+.    .-.|+  
T Consensus       268 ~A~~~y~~rDfD~a~s~Feei~kn----------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR~E--  331 (559)
T KOG1155|consen  268 IAAASYNQRDFDQAESVFEEIRKN----------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYRPE--  331 (559)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhc----------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCCcc--
Confidence            345667888999999999987754          55444444445555554444332222223333321    22232  


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                       ....+|+.|...++.++|+.+|++|+++        +|....++..+|.-|..+.+...|++.|++|+++        .
T Consensus       332 -TCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~  394 (559)
T KOG1155|consen  332 -TCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------N  394 (559)
T ss_pred             -ceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------C
Confidence             2567899999999999999999999987        4667889999999999999999999999999998        5


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (510)
                      |..-.+|+.||+.|.-++-+.=|+-+|++|...        .|.....+..||.+|.+.++.++|+..|.+++....   
T Consensus       395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d---  463 (559)
T KOG1155|consen  395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD---  463 (559)
T ss_pred             chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc---
Confidence            666799999999999999999999999999985        355567888999999999999999999999998722   


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                           .  -..++..||.+|.+.++.++|..+|++.++.. ...|...+.+..+...|+..+.+.+++++|..+..+++.
T Consensus       464 -----t--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  464 -----T--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             -----c--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence                 1  13467899999999999999999999999876 333556677888888899999999999999998887766

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.83  E-value=2.1e-17  Score=157.66  Aligned_cols=322  Identities=14%  Similarity=0.121  Sum_probs=244.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (510)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (510)
                      ..++++.++..|..++..|++++|..++.+++..          .|..+.+|..||.+|-.+|+.+++....-.|..+. 
T Consensus       135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-  203 (895)
T KOG2076|consen  135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQ----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-  203 (895)
T ss_pred             cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-
Confidence            4467888999999999999999999999999988          89999999999999999999999999887776654 


Q ss_pred             hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (510)
                         +.++   ..|..++.....+|++++|.-+|.+|++.        .|.........+.+|.+.|+...|...+.+++.
T Consensus       204 ---p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~  269 (895)
T KOG2076|consen  204 ---PKDY---ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ  269 (895)
T ss_pred             ---CCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence               3333   44889999999999999999999999986        244567788899999999999999999999998


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010446          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  353 (510)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (510)
                      ....   .+...........+..+...++-+.|.+.++.++.....      ......++.++.++.....++.|.....
T Consensus       270 ~~p~---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~------~~~~ed~ni~ael~l~~~q~d~~~~~i~  340 (895)
T KOG2076|consen  270 LDPP---VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD------EASLEDLNILAELFLKNKQSDKALMKIV  340 (895)
T ss_pred             hCCc---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc------cccccHHHHHHHHHHHhHHHHHhhHHHH
Confidence            7420   011222333445577788888889999999888873221      1122334456666776666766666554


Q ss_pred             HHHH----------------------HHHhhc--------------------------------cCCCCChHHHHHHHHH
Q 010446          354 KALR----------------------VIKDSN--------------------------------YMSLDDSIMENMRIDL  379 (510)
Q Consensus       354 ~al~----------------------~~~~~~--------------------------------~~~~~~~~~~~~~~~l  379 (510)
                      ....                      ++.-..                                ............+..+
T Consensus       341 ~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~  420 (895)
T KOG2076|consen  341 DDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDL  420 (895)
T ss_pred             HHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHH
Confidence            4332                      000000                                0001123345567889


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHH
Q 010446          380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP  459 (510)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  459 (510)
                      +.++...|++.+|+.++......       .......+|..+|.||..+|.+++|+++|++++..        .|+...+
T Consensus       421 a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D~  485 (895)
T KOG2076|consen  421 ADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLDA  485 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchhh
Confidence            99999999999999999876542       22234678999999999999999999999999984        5677788


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Q 010446          460 MLHLGITLYHLNRDKEAEKLVLEAL  484 (510)
Q Consensus       460 ~~~la~~~~~~g~~~~A~~~~~~al  484 (510)
                      ...|+.++..+|++++|.+.+.+..
T Consensus       486 Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  486 RITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHhccc
Confidence            8999999999999998877776643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.83  E-value=1.6e-16  Score=167.95  Aligned_cols=436  Identities=13%  Similarity=0.064  Sum_probs=297.7

Q ss_pred             ccccccccccccccchhhHHHhhhhcccccCCCcccchhhhhhhccCCC----CCchHHhhhhhhhhhhcccccchHHHH
Q 010446           41 LQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFS----APNDFARSKTLHDHSSNLWDGMNDFER  116 (510)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~  116 (510)
                      +.+.+...+.|+..++.+.++....+.+.++..+...+...+....-|.    ....|.+++.++..+....-...+.. 
T Consensus       260 ~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~-  338 (903)
T PRK04841        260 LDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQ-  338 (903)
T ss_pred             HhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCch-
Confidence            4566777788888888888888888887777777666666655433322    11236666777665542221111111 


Q ss_pred             HHHHHH-HHHHHHHHcCChhHHHHHHHHHH------HH----------------HHHHHhcCC--CChhHHHHHHHHHHH
Q 010446          117 QLLELF-NEVKSMIMMGNKNDAIDLLQANY------EA----------------VKEQINAGN--KGIEEVAILDIIALG  171 (510)
Q Consensus       117 ~~~~l~-~~~~~~~~~g~~~~A~~~~~~al------~~----------------~~~~~~~~~--~~~~~~~~~~~l~~~  171 (510)
                      ....+. ..+..+...|++.+|+..+..+-      ..                ........+  .....+......+.+
T Consensus       339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~  418 (903)
T PRK04841        339 ELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL  418 (903)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence            122333 33455666777776666554320      00                000000000  000112234556777


Q ss_pred             HHhhCChHHHHHHHHHHHHhhhhcC-C-CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010446          172 YVYIGDLKFVQSLLDMMSGIVDSLK-D-DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (510)
Q Consensus       172 ~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (510)
                      +...|++++|...+..+.......+ . .......+...++.++...|++++|..++++++.....   .+......+..
T Consensus       419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~  495 (903)
T PRK04841        419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATS  495 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHH
Confidence            8889999999999988876543321 1 11223444556788899999999999999999875211   12223455678


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 010446          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (510)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (510)
                      .+|.++...|++++|...+++++.......  .......++..+|.++...|++++|...+++++.+.....+...+...
T Consensus       496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        496 VLGEVHHCKGELARALAMMQQTEQMARQHD--VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            899999999999999999999999877643  222335577889999999999999999999999998776443334444


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC-
Q 010446          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG-  408 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-  408 (510)
                      ..+..+|.++...|++++|...+.+++......   +  +......+..+|.++...|++++|...+.++..+...... 
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~  648 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY---Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH  648 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc---C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence            556778999999999999999999999987642   1  2234456678999999999999999999988765432100 


Q ss_pred             -------------------C----------------C-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCC
Q 010446          409 -------------------K----------------E-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  452 (510)
Q Consensus       409 -------------------~----------------~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (510)
                                         .                . .......+..++.++...|++++|...+++++...+..  ..
T Consensus       649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~--g~  726 (903)
T PRK04841        649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL--RL  726 (903)
T ss_pred             HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--Cc
Confidence                               0                0 00011124578889999999999999999999986553  23


Q ss_pred             ChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      ......++..+|.++...|+.++|...+.+++++...
T Consensus       727 ~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        727 MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            3466778889999999999999999999999998744

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.82  E-value=3.1e-16  Score=161.61  Aligned_cols=304  Identities=13%  Similarity=0.086  Sum_probs=199.9

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHH
Q 010446          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (510)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (510)
                      +..+.+.|++++|..+++++.+.       +  ...+..++..+...|.+.|++++|..+|+.+....     -.|+.. 
T Consensus       479 I~~y~k~G~vd~A~~vf~eM~~~-------G--v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-----v~PD~v-  543 (1060)
T PLN03218        479 ISTCAKSGKVDAMFEVFHEMVNA-------G--VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-----VKPDRV-  543 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-----CCCCHH-
Confidence            34455556666666555555432       1  12234566666777777777777777776654421     123322 


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010446          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (510)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (510)
                      +|..+...|.+.|++++|.+.+.++.....    .-.|+ ..++..+...|.+.|++++|.++|+++.+.       +.+
T Consensus       544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~  611 (1060)
T PLN03218        544 VFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIK  611 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCC
Confidence            366677777777777777777776654210    01122 346667777788888888888877776553       223


Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (510)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (510)
                      ....+|+.+...|.+.|++++|..+|.++.+.     | -.|+ ..++..+...|.+.|++++|.++++++.+.      
T Consensus       612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~------  678 (1060)
T PLN03218        612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ------  678 (1060)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence            34567777888888888888888888876652     1 1222 356777888888888888888888887654      


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                       +..+.  ..++..+...|.+.|++++|.++|++....      ...|+ ..+|+.+...|.+.|++++|.++|+++...
T Consensus       679 -G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~------g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~  748 (1060)
T PLN03218        679 -GIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSI------KLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL  748 (1060)
T ss_pred             -CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence             21121  235678888899999999998888876432      12233 356888899999999999999999887652


Q ss_pred             HHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                            .-.|+ ..++..+...+.+.|++++|.+++.++.+
T Consensus       749 ------Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        749 ------GLCPN-TITYSILLVASERKDDADVGLDLLSQAKE  782 (1060)
T ss_pred             ------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                  12233 34567777888999999999999888765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.6e-18  Score=146.25  Aligned_cols=282  Identities=16%  Similarity=0.199  Sum_probs=226.7

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHH
Q 010446          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL  207 (510)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (510)
                      ++...|...|-......++.-.............-.--..+|.||.+.|-+.+|.+.++..+...     ..++   .+.
T Consensus       189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-----~~~d---Tfl  260 (478)
T KOG1129|consen  189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-----PHPD---TFL  260 (478)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-----Cchh---HHH
Confidence            35666778887777766665333221122223333444679999999999999999999988654     1232   377


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 010446          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (510)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (510)
                      .++.+|.+..+...|+..+.+.++.+        |.....+..++.++..++++++|.++|+.+++.        ++..+
T Consensus       261 lLskvY~ridQP~~AL~~~~~gld~f--------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nv  324 (478)
T KOG1129|consen  261 LLSKVYQRIDQPERALLVIGEGLDSF--------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINV  324 (478)
T ss_pred             HHHHHHHHhccHHHHHHHHhhhhhcC--------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccc
Confidence            89999999999999999999988753        556777889999999999999999999999986        56667


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010446          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (510)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (510)
                      .+...+|..|+..++.+-|+.+|++.+.+     |..+   ...++|+|.+++..++++-++..|++++....       
T Consensus       325 EaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat-------  389 (478)
T KOG1129|consen  325 EAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-------  389 (478)
T ss_pred             eeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-------
Confidence            77778899999999999999999999986     2333   46789999999999999999999999998854       


Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (510)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (510)
                      .+...+.+|+|+|.+....|++.-|...|+-++.        .++....++++||.+-.+.|+.++|..++..+-..   
T Consensus       390 ~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~---  458 (478)
T KOG1129|consen  390 QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV---  458 (478)
T ss_pred             CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh---
Confidence            3556678999999999999999999999988775        45677899999999999999999999999988764   


Q ss_pred             HhCCCChhhHHHHHHHH
Q 010446          448 TVGPDDQSISFPMLHLG  464 (510)
Q Consensus       448 ~~~~~~~~~~~~~~~la  464 (510)
                           .|+..+...+++
T Consensus       459 -----~P~m~E~~~Nl~  470 (478)
T KOG1129|consen  459 -----MPDMAEVTTNLQ  470 (478)
T ss_pred             -----Ccccccccccee
Confidence                 345555445544

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.81  E-value=2.7e-16  Score=162.06  Aligned_cols=308  Identities=13%  Similarity=0.051  Sum_probs=237.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +......+...|++++|..+++++.+.       +  ......++..+...|.+.|+.++|..+|+++....     ..|
T Consensus       440 yn~LL~a~~k~g~~e~A~~lf~~M~~~-------G--l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v~P  505 (1060)
T PLN03218        440 FNMLMSVCASSQDIDGALRVLRLVQEA-------G--LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----VEA  505 (1060)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CCC
Confidence            334456778889999999988887653       1  23456678899999999999999999999887532     223


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      +. ..|..+...|.+.|++++|...|.+..+..      -.| ...+|..+...|.+.|++++|.+++.++......   
T Consensus       506 dv-vTynaLI~gy~k~G~~eeAl~lf~~M~~~G------v~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g---  574 (1060)
T PLN03218        506 NV-HTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHP---  574 (1060)
T ss_pred             CH-HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC---
Confidence            33 347888999999999999999998876531      112 2567889999999999999999999988653110   


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                       -.| ...+++.+...|.+.|++++|.++|+++.+.       +.+....+|+.+...|.+.|++++|..+|+++...  
T Consensus       575 -i~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~--  643 (1060)
T PLN03218        575 -IDP-DHITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK--  643 (1060)
T ss_pred             -CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Confidence             122 2567888999999999999999999987663       22334467888999999999999999999998764  


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (510)
                           +..+.  ..++..+...|.+.|++++|.++++++.+.       .......++..+...|.+.|++++|.+.|++
T Consensus       644 -----Gv~PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e  709 (1060)
T PLN03218        644 -----GVKPD--EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWKKALELYED  709 (1060)
T ss_pred             -----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                 22222  236688999999999999999999987652       1223346788999999999999999999998


Q ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                      +...      .-.|+ ..+|..+...|.+.|++++|.++|+++.+
T Consensus       710 M~~~------g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        710 IKSI------KLRPT-VSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7652      12333 45789999999999999999999998754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=7.8e-17  Score=145.49  Aligned_cols=324  Identities=15%  Similarity=0.157  Sum_probs=245.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +-..+...+..|+|+.|+.+|..++.+          +|.+...+.+...+|...|+|++|..--.+..++.       |
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l----------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p   67 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIML----------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------P   67 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHcc----------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------C
Confidence            344667778888888888888888877          66666777778888888888888877776666554       6


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH----------------------------------------------
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE----------------------------------------------  234 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------------------------  234 (510)
                      .++..|..+|..+.-.|+|++|+..|.+.++...                                              
T Consensus        68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~  147 (539)
T KOG0548|consen   68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA  147 (539)
T ss_pred             chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence            6667778888888888888888887777665300                                              


Q ss_pred             -------------------------Hh----c-------------------CC------------CCh------hHHHHH
Q 010446          235 -------------------------SR----Y-------------------GK------------TSI------LLVTSL  248 (510)
Q Consensus       235 -------------------------~~----~-------------------~~------------~~~------~~~~~~  248 (510)
                                               +.    .                   .+            +..      ..+.-.
T Consensus       148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e  227 (539)
T KOG0548|consen  148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE  227 (539)
T ss_pred             HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence                                     00    0                   00            000      123456


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (510)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (510)
                      ..+|...+...++..|+++|.+++++.         .....+++.+-+|...|.+.+.+....++++.....-. +...+
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klI  297 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLI  297 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHH
Confidence            678999999999999999999999984         33567788999999999999999999988876543311 11225


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc----------------cCCCCChHHHHHHHHHHHHHHHcCChHHH
Q 010446          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN----------------YMSLDDSIMENMRIDLAELLHIVGRGQEG  392 (510)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A  392 (510)
                      +.++..+|..|...++++.|+.+|.+++.-.+...                ...--.+..+.--..-|..++..|+|..|
T Consensus       298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A  377 (539)
T KOG0548|consen  298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA  377 (539)
T ss_pred             HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence            56666788899999999999999999876543200                00000112233334568899999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC
Q 010446          393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR  472 (510)
Q Consensus       393 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  472 (510)
                      +..|.+++..        .|+....|.+.|.+|...|++..|+...+.++++        +|.....|..-|.++..+.+
T Consensus       378 v~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~  441 (539)
T KOG0548|consen  378 VKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKE  441 (539)
T ss_pred             HHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHH
Confidence            9999998873        4788899999999999999999999999999885        78889999999999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 010446          473 DKEAEKLVLEALYIR  487 (510)
Q Consensus       473 ~~~A~~~~~~al~~~  487 (510)
                      |++|.+.|+++++..
T Consensus       442 ydkAleay~eale~d  456 (539)
T KOG0548|consen  442 YDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998754

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=3.3e-17  Score=148.46  Aligned_cols=278  Identities=15%  Similarity=0.154  Sum_probs=223.6

Q ss_pred             hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (510)
                      +..+++...+..++..++|.+..++.+..++..    +-++..  .-..+| ++...|+..+=..+-.+.++        
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d----pfh~~~--~~~~ia-~l~el~~~n~Lf~lsh~LV~--------  306 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD----PFHLPC--LPLHIA-CLYELGKSNKLFLLSHKLVD--------  306 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC----CCCcch--HHHHHH-HHHHhcccchHHHHHHHHHH--------
Confidence            445667778888889999999999888877654    222222  234566 66777766554433333333        


Q ss_pred             CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (510)
                      ..|..+.+|+.+|..|...|++.+|..++.++..+        ++..+.+|...|..+...|..++|+..|..|-++...
T Consensus       307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G  378 (611)
T KOG1173|consen  307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG  378 (611)
T ss_pred             hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence            34667788999999999999999999999999877        6777899999999999999999999999999887633


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (510)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (510)
                      .    +    .-...+|.-|...++++-|..+|.+|+.+.       |.+|.   ++..+|.+....+.+.+|..+|+.+
T Consensus       379 ~----h----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-------P~Dpl---v~~Elgvvay~~~~y~~A~~~f~~~  440 (611)
T KOG1173|consen  379 C----H----LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-------PSDPL---VLHELGVVAYTYEEYPEALKYFQKA  440 (611)
T ss_pred             C----c----chHHHHHHHHHHhccHHHHHHHHHHHHhcC-------CCcch---hhhhhhheeehHhhhHHHHHHHHHH
Confidence            2    1    223558889999999999999999999984       44544   3488999999999999999999999


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (510)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (510)
                      +...+... +..+.....+.+||.+|.+++.+++|+.+|++++.+        .|....++..+|-+|..+|+++.|+++
T Consensus       441 l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~  511 (611)
T KOG1173|consen  441 LEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDH  511 (611)
T ss_pred             HHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHH
Confidence            97666653 334456678999999999999999999999999985        456677889999999999999999999


Q ss_pred             HHHHHHHH
Q 010446          480 VLEALYIR  487 (510)
Q Consensus       480 ~~~al~~~  487 (510)
                      |.+++.+.
T Consensus       512 fhKaL~l~  519 (611)
T KOG1173|consen  512 FHKALALK  519 (611)
T ss_pred             HHHHHhcC
Confidence            99998754

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.79  E-value=2.4e-16  Score=134.22  Aligned_cols=319  Identities=17%  Similarity=0.093  Sum_probs=250.2

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (510)
                      ++..-+..+..+...|++..|+..|..|++.          +|....+++..|.+|...|+-..|+.-+.+++++-    
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----  102 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK----  102 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----
Confidence            4555777899999999999999999999987          89999999999999999999999999999998775    


Q ss_pred             CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010446          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYH  269 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~  269 (510)
                         |+...+....|.++.++|++++|..-|...++.........       .......+......+...|++..|+++..
T Consensus       103 ---pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~  179 (504)
T KOG0624|consen  103 ---PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT  179 (504)
T ss_pred             ---ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence               77777788999999999999999999999987521100000       00112233444556777899999999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHH
Q 010446          270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  349 (510)
Q Consensus       270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  349 (510)
                      ..+++        .|..+..+...+.||...|+...|+.-++.+-++.        .+....++.++.+++..|+.+.++
T Consensus       180 ~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~Y~vgd~~~sL  243 (504)
T KOG0624|consen  180 HLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLLYTVGDAENSL  243 (504)
T ss_pred             HHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHHHH
Confidence            99987        56778888899999999999999999998887652        334467888999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCChHHHHHHHHH---------HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 010446          350 ELYKKALRVIKDSNYMSLDDSIMENMRIDL---------AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  420 (510)
Q Consensus       350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  420 (510)
                      ...++++++       .|++......|-.+         +.-....++|.++++..++.++.-.+    ..+........
T Consensus       244 ~~iRECLKl-------dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~----~~~ir~~~~r~  312 (504)
T KOG0624|consen  244 KEIRECLKL-------DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE----ETMIRYNGFRV  312 (504)
T ss_pred             HHHHHHHcc-------CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc----ccceeeeeehe
Confidence            999999987       56665544333333         23344556677777666666543111    12233445667


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      +..|+..-|++.+|+....+++++        .|+.+.++...|.+|.....|+.|+.-|++|.+.-
T Consensus       313 ~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  313 LCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             eeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            888999999999999999999984        57778899999999999999999999999998753

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.78  E-value=3.8e-15  Score=126.01  Aligned_cols=306  Identities=13%  Similarity=0.124  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      -+-.+..+.-..+.++|++.|..+++.          ++...++...+|..|...|..+.|+.+.+......   +-...
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~----------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~  104 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQE----------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFE  104 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhc----------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchH
Confidence            344566667788999999999999886          88999999999999999999999999998877543   22233


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ....++..+|.-|...|-++.|+..|....+.        ......++..+..+|....++++|++..++...+-.+   
T Consensus       105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---  173 (389)
T COG2956         105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---  173 (389)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---
Confidence            45566899999999999999999999887653        1233467888999999999999999999887776322   


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                      +.....+..|..++..+....+.+.|...+.+|++.        +|....+-..+|.+....|+++.|++.++.+++.  
T Consensus       174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--  243 (389)
T COG2956         174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--  243 (389)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh--
Confidence            234567788899999999999999999999999984        5667778888999999999999999999998875  


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (510)
                             ++..+..+...|..+|...|+.++.+.++.++.+....      +   .....++..-....-.+.|..++.+
T Consensus       244 -------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g------~---~~~l~l~~lie~~~G~~~Aq~~l~~  307 (389)
T COG2956         244 -------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG------A---DAELMLADLIELQEGIDAAQAYLTR  307 (389)
T ss_pred             -------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC------c---cHHHHHHHHHHHhhChHHHHHHHHH
Confidence                   46667778889999999999999999999998775321      1   2334455555566667777777766


Q ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHH---hcCChHHHHHHHHHHHH
Q 010446          441 CLDIMTKTVGPDDQSISFPMLHLGITLY---HLNRDKEAEKLVLEALY  485 (510)
Q Consensus       441 al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~  485 (510)
                      -+.        .+|+....+..+ ....   ..|...+....++..+.
T Consensus       308 Ql~--------r~Pt~~gf~rl~-~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         308 QLR--------RKPTMRGFHRLM-DYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             HHh--------hCCcHHHHHHHH-HhhhccccccchhhhHHHHHHHHH
Confidence            655        356655433322 2222   23445555556555543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=4.8e-17  Score=137.49  Aligned_cols=284  Identities=15%  Similarity=0.063  Sum_probs=227.1

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh--cCCCchHH-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS--LKDDEPLL-DAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (510)
                      .|....+++.  .+++...|...|........++...  .+...... ...-..+|.||.+.|-+.+|.+.++.+++.. 
T Consensus       177 ~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-  253 (478)
T KOG1129|consen  177 RPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-  253 (478)
T ss_pred             ChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-
Confidence            3444444433  3566778888887766665544322  11111111 2224579999999999999999999998742 


Q ss_pred             HhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (510)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (510)
                              ...+++..++.+|....++..|+..+.+.++.        .|..+..+..+++++..++++++|.++|+.++
T Consensus       254 --------~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl  317 (478)
T KOG1129|consen  254 --------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVL  317 (478)
T ss_pred             --------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence                    23567888999999999999999999999875        56678888999999999999999999999999


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 010446          315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (510)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (510)
                      +.        ++....+...+|.-|+..++.+-|+.+|++.+++       +...+.   .+.|+|.++...++++-++.
T Consensus       318 k~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-------G~~spe---Lf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  318 KL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-------GAQSPE---LFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             hc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-------cCCChH---HHhhHHHHHHhhcchhhhHH
Confidence            84        4555666777888899999999999999999988       444443   45899999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChH
Q 010446          395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK  474 (510)
Q Consensus       395 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  474 (510)
                      .|++++....     .....+.+|+++|.+....|++.-|..+|+-++.        .+++...++.+||.+-.+.|+.+
T Consensus       380 sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~  446 (478)
T KOG1129|consen  380 SFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDIL  446 (478)
T ss_pred             HHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchH
Confidence            9999998763     2345678999999999999999999999999887        46778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 010446          475 EAEKLVLEALYIREIAF  491 (510)
Q Consensus       475 ~A~~~~~~al~~~~~~~  491 (510)
                      +|..++..|-.+....+
T Consensus       447 ~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  447 GARSLLNAAKSVMPDMA  463 (478)
T ss_pred             HHHHHHHHhhhhCcccc
Confidence            99999999877654443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.78  E-value=4.5e-15  Score=127.39  Aligned_cols=346  Identities=14%  Similarity=0.089  Sum_probs=267.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      -...+..++...++.+|+..+.+.+.....       .......+..+..+...+|.|++++.+--..+...... ++..
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-------~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-~ds~   80 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSD-------LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-EDSD   80 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHH-------HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            345677889999999999999998877544       44556677778888899999999988765555554442 2334


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ....++.+++..+....++.+++.+-...+.+--...+   ..-......+|..+..++.++++++.|++|+++..... 
T Consensus        81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~-  156 (518)
T KOG1941|consen   81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND-  156 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC-
Confidence            45667899999999999999999888776654211100   12235566799999999999999999999999987654 


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                       +......++..||..+....++++|.-+..+|.++.....-.+.  .....+++.++..+..+|+.-.|.++.+++.++
T Consensus       157 -D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  157 -DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             -CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence             33344677889999999999999999999999999877632221  124567888999999999999999999999999


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHH-----
Q 010446          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE-----  433 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----  433 (510)
                      .-.    ..+.+..+.....+|++|...|+.+.|..-|++|+.+.....  +......++...|.+.....-..+     
T Consensus       236 al~----~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g--drmgqv~al~g~Akc~~~~r~~~k~~~Cr  309 (518)
T KOG1941|consen  236 ALQ----HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG--DRMGQVEALDGAAKCLETLRLQNKICNCR  309 (518)
T ss_pred             HHH----hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            876    467777788889999999999999999999999999887763  344555677777777766554444     


Q ss_pred             HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          434 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       434 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      |++.-++++++...+.  ....+......++.+|..+|.-++=...+..+-+..
T Consensus       310 ale~n~r~levA~~IG--~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~  361 (518)
T KOG1941|consen  310 ALEFNTRLLEVASSIG--AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV  361 (518)
T ss_pred             hhHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            9999999999987763  234566778899999999998887777776665443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=2.2e-17  Score=145.52  Aligned_cols=324  Identities=16%  Similarity=0.141  Sum_probs=197.9

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHH
Q 010446          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (510)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (510)
                      +..+++..+|.+|+.+|+-+++....+.     ......++.++|..+.+.|.|+.|+..|+...+..       |....
T Consensus       244 gni~~kkr~fskaikfyrmaldqvpsin-----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-------pn~~a  311 (840)
T KOG2003|consen  244 GNIHFKKREFSKAIKFYRMALDQVPSIN-----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-------PNFIA  311 (840)
T ss_pred             cceeeehhhHHHHHHHHHHHHhhccccc-----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-------ccHHh
Confidence            3445566678888888888887643322     44556778888888888888888888888766543       33333


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHH---------------------------------------------------
Q 010446          205 ILLHMGSMYSTLENYEKSMLVYQRVINVL---------------------------------------------------  233 (510)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------------------------------------  233 (510)
                       -+++..+++..|+-++-.+.|++.+.+-                                                   
T Consensus       312 -~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii  390 (840)
T KOG2003|consen  312 -ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII  390 (840)
T ss_pred             -hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence             2445555555666655555555554330                                                   


Q ss_pred             HHhcCCC-----------------ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--------------HHhc-CC
Q 010446          234 ESRYGKT-----------------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL--------------ELNR-GT  281 (510)
Q Consensus       234 ~~~~~~~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------~~~~-~~  281 (510)
                      .....++                 .+.....-.+.+..+.+.|+++.|++.++-.-..-              .-.. |.
T Consensus       391 apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk  470 (840)
T KOG2003|consen  391 APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK  470 (840)
T ss_pred             ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence            0000000                 00011112234556677788887777654221100              0000 00


Q ss_pred             --------------CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHH
Q 010446          282 --------------ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE  347 (510)
Q Consensus       282 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  347 (510)
                                    .+...+.++.+-|.+-+..|++++|.+.|++++.        ++.....+++++|..+..+|+.++
T Consensus       471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~lde  542 (840)
T KOG2003|consen  471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDE  542 (840)
T ss_pred             chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHH
Confidence                          0122234455566666677888888888888875        456677888888888888899999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----------hh---C------
Q 010446          348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK----------YK---G------  408 (510)
Q Consensus       348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~---~------  408 (510)
                      |+++|-+...+....          +.++..++.+|..+.+..+|++++-++..+...          .+   |      
T Consensus       543 ald~f~klh~il~nn----------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf  612 (840)
T KOG2003|consen  543 ALDCFLKLHAILLNN----------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF  612 (840)
T ss_pred             HHHHHHHHHHHHHhh----------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence            988888877765432          445677788888888888888877766543200          00   0      


Q ss_pred             -------CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446          409 -------KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (510)
Q Consensus       409 -------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (510)
                             ...|....+...||..|....-+++|+.+|+++--+        .|....-...++.|+.+.|+|++|.+.|+
T Consensus       613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk  684 (840)
T KOG2003|consen  613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYK  684 (840)
T ss_pred             hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence                   012333344445566666666666666666666442        34555555678899999999999999998


Q ss_pred             HHHHHH
Q 010446          482 EALYIR  487 (510)
Q Consensus       482 ~al~~~  487 (510)
                      ...+-+
T Consensus       685 ~~hrkf  690 (840)
T KOG2003|consen  685 DIHRKF  690 (840)
T ss_pred             HHHHhC
Confidence            876544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.3e-16  Score=140.44  Aligned_cols=272  Identities=12%  Similarity=0.085  Sum_probs=217.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 010446          133 NKNDAIDLLQANYEAVKEQINAG---NKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (510)
Q Consensus       133 ~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (510)
                      .|.+|.+.+.+............   ......+.++...|..++..|++-.|...++.++.+...       ....|..+
T Consensus       294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-------~~~lyI~~  366 (606)
T KOG0547|consen  294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-------FNSLYIKR  366 (606)
T ss_pred             hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-------cchHHHHH
Confidence            67888888887766544432111   112345778889999999999999999999999987522       22337889


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 010446          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  289 (510)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (510)
                      |.+|....+..+....|.+|.++        +|....+|+..|.+++-++++++|+.-|++++.+        .|..+.+
T Consensus       367 a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~  430 (606)
T KOG0547|consen  367 AAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYA  430 (606)
T ss_pred             HHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHH
Confidence            99999999999999999999886        3555678999999999999999999999999998        6778899


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (510)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (510)
                      +..++...+++++++++...|+++...        -|....+++..|.++..+++|++|++.|++++++.........+ 
T Consensus       431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~-  501 (606)
T KOG0547|consen  431 YIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN-  501 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc-
Confidence            999999999999999999999999874        46677888999999999999999999999999985442000000 


Q ss_pred             hHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446          370 SIMENMRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (510)
Q Consensus       370 ~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (510)
                         +..+..-|.+. .-.+++..|+.++++|+++        +|..-.++..||.+..++|+.++|+++|+++..+.+.
T Consensus       502 ---~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  502 ---AAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             ---chhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence               11122223222 2358999999999999885        4666678999999999999999999999999987654

>PRK12370 invasion protein regulator; Provisional

Probab=99.76  E-value=3.5e-16  Score=153.98  Aligned_cols=251  Identities=10%  Similarity=-0.035  Sum_probs=193.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh---------CChHHHHHHHHHHHHhhhhcCCCchHH
Q 010446          132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---------GDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (510)
Q Consensus       132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (510)
                      +++++|+.++++++++          +|..+.++..+|.++...         +++++|...+++++++.       |..
T Consensus       275 ~~~~~A~~~~~~Al~l----------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~  337 (553)
T PRK12370        275 YSLQQALKLLTQCVNM----------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNN  337 (553)
T ss_pred             HHHHHHHHHHHHHHhc----------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCC
Confidence            4577999999999987          888888899999887643         34789999999988764       444


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                      ..++..+|.++...|++++|+..|++++++        +|....++..+|.++...|++++|+..+++++++        
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--------  401 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKL--------  401 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence            556888999999999999999999999986        2555678899999999999999999999999997        


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (510)
                      .|........++.++...|++++|+..+++++..       ..|.....+.++|.++...|++++|...+.+....    
T Consensus       402 ~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~----  470 (553)
T PRK12370        402 DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ----  470 (553)
T ss_pred             CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----
Confidence            3444444555666778899999999999998764       23445567888999999999999999999876443    


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010446          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (510)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (510)
                            .+........++..|...|  ++|...+++.++......  .+      ...++.+|.-.|+.+.+..+ +++.
T Consensus       471 ------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~--~~------~~~~~~~~~~~g~~~~~~~~-~~~~  533 (553)
T PRK12370        471 ------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID--NN------PGLLPLVLVAHGEAIAEKMW-NKFK  533 (553)
T ss_pred             ------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh--cC------chHHHHHHHHHhhhHHHHHH-HHhh
Confidence                  2222344577888888888  488888888666544321  11      12267788888888888777 6555


Q ss_pred             H
Q 010446          443 D  443 (510)
Q Consensus       443 ~  443 (510)
                      +
T Consensus       534 ~  534 (553)
T PRK12370        534 N  534 (553)
T ss_pred             c
Confidence            4

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=1.2e-17  Score=150.75  Aligned_cols=266  Identities=18%  Similarity=0.172  Sum_probs=109.2

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH
Q 010446          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (510)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (510)
                      +..+..++..|++++|++.+.+.+...        .++.....+..+|.+....|+++.|+..+++++...    +.   
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~--------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----~~---   76 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKI--------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD----KA---   76 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccccccc----cc---
Confidence            356888999999999999997655431        135666888889999999999999999999987653    22   


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (510)
                      ....+..++.+ ...+++++|..+++++.+..      .+   ...+.....++...|+++++...++++....      
T Consensus        77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------  140 (280)
T PF13429_consen   77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERD------GD---PRYLLSALQLYYRLGDYDEAEELLEKLEELP------  140 (280)
T ss_dssp             ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T------
T ss_pred             ccccccccccc-cccccccccccccccccccc------cc---cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------
Confidence            22335566666 68999999999998876542      11   2345566778899999999999999877431      


Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                      ..+.....+..+|.++...|+.++|+..++++++.        .|....+...++.++...|+.+++.+.+........ 
T Consensus       141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~-  211 (280)
T PF13429_consen  141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP-  211 (280)
T ss_dssp             ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-
Confidence            23455778889999999999999999999999996        344556677889999999999998888888776642 


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                            +++.   .+..+|.++...|++++|+.++++++..        +|....++..+|.++...|+.++|..+++++
T Consensus       212 ------~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  212 ------DDPD---LWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             ------TSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT---------------
T ss_pred             ------CHHH---HHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccc
Confidence                  2222   3467899999999999999999998874        4556677889999999999999999999998


Q ss_pred             HHH
Q 010446          442 LDI  444 (510)
Q Consensus       442 l~~  444 (510)
                      +..
T Consensus       275 ~~~  277 (280)
T PF13429_consen  275 LRL  277 (280)
T ss_dssp             ---
T ss_pred             ccc
Confidence            764

>TIGR00540 hemY_coli hemY protein

Probab=99.76  E-value=6.4e-15  Score=139.81  Aligned_cols=316  Identities=11%  Similarity=-0.014  Sum_probs=220.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ......|......|+++.|.+.+.++.+.          .|.....+...|.++...|+++.|..++.++.+..    ++
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~----------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----p~  150 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADH----------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA----GN  150 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhc----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----Cc
Confidence            34566778889999999999999887664          44445566678999999999999999999987543    12


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                      .. . .+....+.++...|++++|...+++..+.        .|....++..++.++...|++++|.+.+.+..+..   
T Consensus       151 ~~-l-~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~---  217 (409)
T TIGR00540       151 DN-I-LVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG---  217 (409)
T ss_pred             Cc-h-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC---
Confidence            11 1 12344588999999999999999988875        24445678899999999999999999998887651   


Q ss_pred             cCCCCcchH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446          279 RGTESADLV-LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (510)
Q Consensus       279 ~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (510)
                        ...+... ........-+...+..+++...+.++.....    ...+.....+..++..+...|++++|.+.++++++
T Consensus       218 --~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p----~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~  291 (409)
T TIGR00540       218 --LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP----RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK  291 (409)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC----HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence              1122211 1112222222334444445556655554321    11123456778889999999999999999999998


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHhccCHHHHH
Q 010446          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEAE  435 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~  435 (510)
                      .       .+++...... ..........++.+.+++.++++++.        +|+..  ..+..+|.++...|++++|.
T Consensus       292 ~-------~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~  355 (409)
T TIGR00540       292 K-------LGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAA  355 (409)
T ss_pred             h-------CCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHH
Confidence            7       3333321100 11222233457778888888887763        34444  77889999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (510)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  490 (510)
                      ++|+++....      .+|+... +..+|.++.+.|+.++|.+++++++...-.+
T Consensus       356 ~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~  403 (409)
T TIGR00540       356 DAFKNVAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLAI  403 (409)
T ss_pred             HHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            9999543321      1333333 5689999999999999999999998876543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=99.75  E-value=1.8e-15  Score=149.03  Aligned_cols=263  Identities=12%  Similarity=0.020  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHh---hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhh---------hcHHHHHHHHHHHHH
Q 010446          164 ILDIIALGYVY---IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL---------ENYEKSMLVYQRVIN  231 (510)
Q Consensus       164 ~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~  231 (510)
                      .++..|.....   .+++++|+..+++++++.       |....++..+|.++...         +++++|...++++++
T Consensus       260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            34445544433   345779999999988764       44555677888776644         448899999999988


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          232 VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS  311 (510)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  311 (510)
                      +        +|....++..+|.++...|++++|+..+++++++        .|....++..+|.++...|++++|+..++
T Consensus       333 l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        333 L--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             c--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6        3555678889999999999999999999999997        56677889999999999999999999999


Q ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHH
Q 010446          312 RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE  391 (510)
Q Consensus       312 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  391 (510)
                      +++++     .|.+   ......++.++...|++++|+..+++++...      .++.   ...+..+|.++...|++++
T Consensus       397 ~Al~l-----~P~~---~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~------~p~~---~~~~~~la~~l~~~G~~~e  459 (553)
T PRK12370        397 ECLKL-----DPTR---AAAGITKLWITYYHTGIDDAIRLGDELRSQH------LQDN---PILLSMQVMFLSLKGKHEL  459 (553)
T ss_pred             HHHhc-----CCCC---hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc------cccC---HHHHHHHHHHHHhCCCHHH
Confidence            99986     2232   2334445666777999999999999987652      1223   3355789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcC
Q 010446          392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  471 (510)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  471 (510)
                      |...+.+...        ..+........++..|...|  ++|...+++.++.....  +.+      ...++.+|.-.|
T Consensus       460 A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~------~~~~~~~~~~~g  521 (553)
T PRK12370        460 ARKLTKEIST--------QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNN------PGLLPLVLVAHG  521 (553)
T ss_pred             HHHHHHHhhh--------ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcC------chHHHHHHHHHh
Confidence            9999987644        34555567778888888888  48888888876644332  111      133777888899


Q ss_pred             ChHHHHHHHHHHHH
Q 010446          472 RDKEAEKLVLEALY  485 (510)
Q Consensus       472 ~~~~A~~~~~~al~  485 (510)
                      +.+.|.-+ +++.+
T Consensus       522 ~~~~~~~~-~~~~~  534 (553)
T PRK12370        522 EAIAEKMW-NKFKN  534 (553)
T ss_pred             hhHHHHHH-HHhhc
Confidence            98888776 66654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.75  E-value=8.2e-16  Score=156.68  Aligned_cols=293  Identities=15%  Similarity=0.090  Sum_probs=219.7

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      .+..|.+.|++++|...|+++.             +....+|+.+...|...|++++|..+|+++....     -.|+..
T Consensus       265 Li~~y~k~g~~~~A~~vf~~m~-------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-----~~pd~~  326 (697)
T PLN03081        265 LIDMYSKCGDIEDARCVFDGMP-------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-----VSIDQF  326 (697)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCC-------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCHH
Confidence            3466778888888888887642             2345678888899999999999999998876431     223333


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                       .+..+...+...|++++|.+.+..+++..       .+....++..+...|.+.|++++|...|++..+          
T Consensus       327 -t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------  388 (697)
T PLN03081        327 -TFSIMIRIFSRLALLEHAKQAHAGLIRTG-------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------  388 (697)
T ss_pred             -HHHHHHHHHHhccchHHHHHHHHHHHHhC-------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------
Confidence             37778888888999999998888876641       122345677888999999999999998887632          


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (510)
                      + ...+|+.+...|...|+.++|++.|++..+.     | -.|+ ..++..+...+...|..++|.++|+.+.+...   
T Consensus       389 ~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g---  457 (697)
T PLN03081        389 K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----G-VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHR---  457 (697)
T ss_pred             C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC---
Confidence            1 2467889999999999999999999987753     1 1222 35677788889999999999999988775421   


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                       ..|+    ...|..+..+|.+.|++++|.+++++.         +..|+ ..+|..+...+...|+.+.|...+++.++
T Consensus       458 -~~p~----~~~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        458 -IKPR----AMHYACMIELLGREGLLDEAYAMIRRA---------PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             -CCCC----ccchHhHHHHHHhcCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence             1122    235677899999999999999887652         12333 35688888999999999999999888765


Q ss_pred             HHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      +        .|.....|..++.+|...|++++|.+.+++..+.
T Consensus       523 ~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        523 M--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             C--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            3        3444567888999999999999999999987654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.75  E-value=1.2e-17  Score=150.57  Aligned_cols=267  Identities=20%  Similarity=0.192  Sum_probs=107.7

Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010446          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (510)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (510)
                      ..+|.++...|++++|...+.+......     ++.....+..+|.+....+++++|+..|++.+...        +...
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~-----~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~   78 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIA-----PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KANP   78 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccc--------cccc
Confidence            3669999999999999999966443220     13333557789999999999999999999998753        2233


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      ..+..++.+ ...+++++|..+++++.+...         ....+..+..++...++++++...++++...      +..
T Consensus        79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~---------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~  142 (280)
T PF13429_consen   79 QDYERLIQL-LQDGDPEEALKLAEKAYERDG---------DPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAA  142 (280)
T ss_dssp             -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T--
T ss_pred             ccccccccc-ccccccccccccccccccccc---------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCC
Confidence            445566666 689999999999988765421         1234455677889999999999999987742      123


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (510)
                      +.....+..+|.++...|+.++|+..++++++.       .|+++.   +...++.++...|+.+++.+.+.......  
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-------~P~~~~---~~~~l~~~li~~~~~~~~~~~l~~~~~~~--  210 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALEL-------DPDDPD---ARNALAWLLIDMGDYDEAREALKRLLKAA--  210 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------TT-HH---HHHHHHHHHCTTCHHHHHHHHHHHHHHH---
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHHHC--
Confidence            445677888999999999999999999999998       344444   44678999999999999888887766543  


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                         +.++   ..+..+|.+|...|++++|+.+|++++..        +|.....+..+|.++...|+.++|..++++++.
T Consensus       211 ---~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  211 ---PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             ---HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-----------------
T ss_pred             ---cCHH---HHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccccc
Confidence               1223   35667899999999999999999999874        455566778999999999999999999999887


Q ss_pred             HH
Q 010446          486 IR  487 (510)
Q Consensus       486 ~~  487 (510)
                      ..
T Consensus       277 ~l  278 (280)
T PF13429_consen  277 LL  278 (280)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.75  E-value=1.4e-15  Score=134.13  Aligned_cols=205  Identities=16%  Similarity=0.117  Sum_probs=169.4

Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      ......+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.     
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----   94 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----   94 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence            355778899999999999999999999999876        4556788899999999999999999999999985     


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (510)
                         .|.....+.++|.++...|++++|..++++++...        ..+.....+..+|.++...|++++|...+++++.
T Consensus        95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521        95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               23334678889999999999999999999998642        1222234567899999999999999999999987


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (510)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (510)
                      ..        |.....+..+|.++...|++++|..++++++..        .+.....+..++.++...|+.++|..+.+
T Consensus       164 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       164 ID--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             hC--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            52        333567889999999999999999999999885        12334555678899999999999999887


Q ss_pred             HHHHH
Q 010446          482 EALYI  486 (510)
Q Consensus       482 ~al~~  486 (510)
                      .+...
T Consensus       228 ~~~~~  232 (234)
T TIGR02521       228 QLQKL  232 (234)
T ss_pred             HHHhh
Confidence            76543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=4.7e-15  Score=131.03  Aligned_cols=286  Identities=15%  Similarity=0.129  Sum_probs=220.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhC--ChHHHHHHHHHHHHhhhhcCCC
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG--DLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      -++.+..+.+.|+++.|++.+.-.    .+     .+......+-.++...++.+|  ++..|..+...++.+.      
T Consensus       422 ei~ka~~~lk~~d~~~aieilkv~----~~-----kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d------  486 (840)
T KOG2003|consen  422 EINKAGELLKNGDIEGAIEILKVF----EK-----KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID------  486 (840)
T ss_pred             hhhHHHHHHhccCHHHHHHHHHHH----Hh-----ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc------
Confidence            345677889999999999865432    11     112233344566666666644  7888888888887653      


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                       ...+.++.+.|++-+..|++++|.+.|.+++.        ++.....+++++|..+..+|+.++|+++|-+...+... 
T Consensus       487 -ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-  556 (840)
T KOG2003|consen  487 -RYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-  556 (840)
T ss_pred             -ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-
Confidence             33455678899999999999999999999986        44566889999999999999999999999998887543 


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                             .+.++..++.+|..+.+..+|++++.++..+.        |....++..||.+|-+.|+-.+|..++-.....
T Consensus       557 -------n~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~ydsyry  621 (840)
T KOG2003|consen  557 -------NAEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY  621 (840)
T ss_pred             -------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence                   47889999999999999999999999987752        334466788999999999999999998777665


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (510)
                      +.       .+   ..+...||..|....-+++|+.+|+++--+        .|........++.|+.+.|+|.+|.+.|
T Consensus       622 fp-------~n---ie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~y  683 (840)
T KOG2003|consen  622 FP-------CN---IETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLY  683 (840)
T ss_pred             cC-------cc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            32       12   233366899999999999999999998654        4566666778899999999999999999


Q ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC
Q 010446          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR  472 (510)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  472 (510)
                      +..-.-        -|....++..|.++.-.+|-
T Consensus       684 k~~hrk--------fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  684 KDIHRK--------FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHh--------CccchHHHHHHHHHhccccc
Confidence            876552        35556677777777666664

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.74  E-value=1.1e-15  Score=123.51  Aligned_cols=205  Identities=17%  Similarity=0.148  Sum_probs=175.5

Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ..+.+...+|.-|...|++..|...+++|++.        +|....++..++.+|...|+.+.|.+.|++|+.+      
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------   98 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL------   98 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------
Confidence            55678889999999999999999999999997        6778899999999999999999999999999985      


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                        +|....+++|.|..++.+|++++|...|++|+..        |..+....++.|+|.|..+.|+.+.|..+|++++++
T Consensus        99 --~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063          99 --APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD--------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             --CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC--------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence              5677789999999999999999999999999874        556666778899999999999999999999999986


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010446          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  482 (510)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  482 (510)
                      .        |........++..+...|++..|..+++.....        .+..+.++....++-...|+-..|-.+=.+
T Consensus       169 d--------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~q  232 (250)
T COG3063         169 D--------PQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQ  232 (250)
T ss_pred             C--------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3        444566778999999999999999998876652        224556666667777889998888877666


Q ss_pred             HHHHH
Q 010446          483 ALYIR  487 (510)
Q Consensus       483 al~~~  487 (510)
                      ..+.+
T Consensus       233 L~r~f  237 (250)
T COG3063         233 LQRLF  237 (250)
T ss_pred             HHHhC
Confidence            55544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.74  E-value=1.6e-15  Score=122.53  Aligned_cols=204  Identities=18%  Similarity=0.138  Sum_probs=173.0

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      ...+.+...+|.-|...|++..|...++++++.        +|....++..+|.+|...|+.+.|.+.|++|+.+     
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----   98 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-----   98 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence            445667889999999999999999999999986        4677889999999999999999999999999997     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                         .|....+++|.|..++.+|++++|...|++|+.      .|..+....++.|+|.|..+.|+++.|.++|++++++.
T Consensus        99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063          99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence               677899999999999999999999999999997      36667788899999999999999999999999999983


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (510)
                             ++.+.   ....++..+...|++..|..++++....        .+..+..+.....+-...|+-+.|-++=.
T Consensus       170 -------p~~~~---~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~  231 (250)
T COG3063         170 -------PQFPP---ALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQA  231 (250)
T ss_pred             -------cCCCh---HHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence                   33332   3367899999999999999998875442        12445666666777788899888877765


Q ss_pred             HHHH
Q 010446          440 ICLD  443 (510)
Q Consensus       440 ~al~  443 (510)
                      +...
T Consensus       232 qL~r  235 (250)
T COG3063         232 QLQR  235 (250)
T ss_pred             HHHH
Confidence            5544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.73  E-value=4.9e-14  Score=132.52  Aligned_cols=332  Identities=14%  Similarity=0.048  Sum_probs=226.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ....+..+...|+++.+...+.++.....       ............+..+...|++++|...+++++...    +.++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~   77 (355)
T cd05804           9 HAAAALLLLLGGERPAAAAKAAAAAQALA-------ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY----PRDL   77 (355)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcH
Confidence            44466777788899998877777766522       233455567778899999999999999999988764    2222


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                         .++.. +..+...|++..+.....+++..    ..+.++.....+..+|.++...|++++|+..+++++++      
T Consensus        78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------  143 (355)
T cd05804          78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------  143 (355)
T ss_pred             ---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence               22333 55566666665555555555543    23456777778889999999999999999999999997      


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                        .|.....+..+|.++...|++++|+.++++++.....    ........+..+|.++...|++++|+..+++++..  
T Consensus       144 --~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~--  215 (355)
T cd05804         144 --NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP--  215 (355)
T ss_pred             --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence              3445678899999999999999999999999876321    11223456778999999999999999999998543  


Q ss_pred             hhccCCCCChHHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446          361 DSNYMSLDDSIMENM--RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (510)
                           .+........  ...+...+...|....+..+ +.+........ +. +.....-...+.++...|+.++|...+
T Consensus       216 -----~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L  287 (355)
T cd05804         216 -----SAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLL  287 (355)
T ss_pred             -----ccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence                 1211222111  11233344445554444433 22222211110 11 112222236788889999999999999


Q ss_pred             HHHHHHHHHHh-CCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010446          439 RICLDIMTKTV-GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (510)
Q Consensus       439 ~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  493 (510)
                      +......+... ..............|.++...|++++|...+..++.+...+=|+
T Consensus       288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs  343 (355)
T cd05804         288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS  343 (355)
T ss_pred             HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            98877654410 01123345566788999999999999999999999999776443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.73  E-value=3.6e-15  Score=131.50  Aligned_cols=204  Identities=15%  Similarity=0.123  Sum_probs=168.9

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      ......+..+|..+...|++++|+..++++++.        .|....++..+|.++...|++++|+.+++++++.     
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----   94 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----   94 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence            445667899999999999999999999999875        2444678889999999999999999999999986     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                         .|.....+.++|.++...|++++|+..+++++...      ..+.....+.++|.++...|++++|...+.+++...
T Consensus        95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  165 (234)
T TIGR02521        95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID  165 (234)
T ss_pred             ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence               34456788899999999999999999999998741      233445678889999999999999999999998872


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (510)
                             ++.   ...+..+|.++...|++++|..++++++...        +.....+..++.++...|+.++|..+.+
T Consensus       166 -------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       166 -------PQR---PESLLELAELYYLRGQYKDARAYLERYQQTY--------NQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             -------cCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                   333   2356789999999999999999999988761        2234455678899999999999999877


Q ss_pred             HHHH
Q 010446          440 ICLD  443 (510)
Q Consensus       440 ~al~  443 (510)
                      .+..
T Consensus       228 ~~~~  231 (234)
T TIGR02521       228 QLQK  231 (234)
T ss_pred             HHHh
Confidence            6654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.73  E-value=9.6e-15  Score=131.83  Aligned_cols=227  Identities=12%  Similarity=0.086  Sum_probs=166.5

Q ss_pred             hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010446          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (510)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (510)
                      .+..+.++..+.+++...   ..+++..+..++.+|.+|...|++++|+..|++++++        .|....++..+|.+
T Consensus        39 ~~~~e~~i~~~~~~l~~~---~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~  107 (296)
T PRK11189         39 TLQQEVILARLNQILASR---DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY  107 (296)
T ss_pred             chHHHHHHHHHHHHHccc---cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence            345567777777766543   2333555777999999999999999999999999985        35557889999999


Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 010446          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS  334 (510)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  334 (510)
                      +...|++++|+..|++++++        .|....++.++|.++...|++++|+..++++++.     .++++. ...+  
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~-~~~~--  171 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPY-RALW--  171 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH-HHHH--
Confidence            99999999999999999987        5667789999999999999999999999999985     234432 1111  


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhH
Q 010446          335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF  414 (510)
Q Consensus       335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  414 (510)
                       ..+....+++++|+..+.++....      .+  +..     ..+.+....|+..++ ..++.+........ ...+..
T Consensus       172 -~~l~~~~~~~~~A~~~l~~~~~~~------~~--~~~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~  235 (296)
T PRK11189        172 -LYLAESKLDPKQAKENLKQRYEKL------DK--EQW-----GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERL  235 (296)
T ss_pred             -HHHHHccCCHHHHHHHHHHHHhhC------Cc--ccc-----HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHH
Confidence             123456789999999998766431      11  111     134555567776554 24444332211100 012445


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          415 VTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      ..++..+|.++...|++++|+.+|+++++.
T Consensus       236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        236 CETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            678999999999999999999999999984

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.72  E-value=6.4e-14  Score=132.21  Aligned_cols=303  Identities=12%  Similarity=0.069  Sum_probs=208.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII-ALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ...+..|......|++++|.+...++-+.           .+.+..++.+ +......|+++.|..++.++.+..    +
T Consensus        85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-----------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----~  149 (398)
T PRK10747         85 RKQTEQALLKLAEGDYQQVEKLMTRNADH-----------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA----D  149 (398)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----C
Confidence            33556777778899999999766654331           1223333444 556589999999999999987643    1


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      + ..... ....+.++...|++++|+..+++..+.        .|....++..++.+|...|++++|++.+.+..+..  
T Consensus       150 ~-~~~~~-~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~--  217 (398)
T PRK10747        150 N-DQLPV-EITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH--  217 (398)
T ss_pred             c-chHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--
Confidence            1 22222 234588999999999999999998775        24445778889999999999999999998877642  


Q ss_pred             hcCCCCcchHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010446          278 NRGTESADLVL-----PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY  352 (510)
Q Consensus       278 ~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  352 (510)
                         ...+....     ++..+........+    .+.+.+..+...+    ..+....+...++..+...|+.++|...+
T Consensus       218 ---~~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~----~~~~~~~~~~~~A~~l~~~g~~~~A~~~L  286 (398)
T PRK10747        218 ---VGDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSR----KTRHQVALQVAMAEHLIECDDHDTAQQII  286 (398)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCH----HHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence               11111111     22222111112222    2223333222111    12334566777899999999999999999


Q ss_pred             HHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHH
Q 010446          353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV  432 (510)
Q Consensus       353 ~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  432 (510)
                      +++++.       .+ ++...     +.......++.+++++..++.++        .+|+....+..+|.++...|+++
T Consensus       287 ~~~l~~-------~~-~~~l~-----~l~~~l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~  345 (398)
T PRK10747        287 LDGLKR-------QY-DERLV-----LLIPRLKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQ  345 (398)
T ss_pred             HHHHhc-------CC-CHHHH-----HHHhhccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHH
Confidence            998873       23 22222     12222345899999998888765        35677788889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       433 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      +|.++|+++++.        .|+. ..+..++.++.++|+.++|..+|++++.+...
T Consensus       346 ~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~  393 (398)
T PRK10747        346 EASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ  393 (398)
T ss_pred             HHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence            999999999984        3333 34578999999999999999999999987643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.71  E-value=5.5e-15  Score=150.67  Aligned_cols=295  Identities=14%  Similarity=0.055  Sum_probs=184.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ....+..|.+.|++++|..+|+++.+             ....+|+.+...|...|++++|..+|+++......  ++..
T Consensus       161 ~n~Li~~y~k~g~~~~A~~lf~~m~~-------------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~--p~~~  225 (697)
T PLN03081        161 MNRVLLMHVKCGMLIDARRLFDEMPE-------------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD--AEPR  225 (697)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhcCCC-------------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC--CChh
Confidence            34455778888999999888887531             23457888899999999999999999988653211  1100


Q ss_pred             H-------------------------------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010446          201 L-------------------------------LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (510)
Q Consensus       201 ~-------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (510)
                      .                               ...++..+...|.+.|++++|...|++...           ....+|+
T Consensus       226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~~~vt~n  294 (697)
T PLN03081        226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----------KTTVAWN  294 (697)
T ss_pred             hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----------CChhHHH
Confidence            0                               011245677888899999999988876421           1345788


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 010446          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (510)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (510)
                      .+...|...|++++|+.+|+++.+.       .......++..+...+...|++++|...+..+++.       ..+...
T Consensus       295 ~li~~y~~~g~~~eA~~lf~~M~~~-------g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~  360 (697)
T PLN03081        295 SMLAGYALHGYSEEALCLYYEMRDS-------GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDI  360 (697)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCe
Confidence            8999999999999999999887543       11223456777778888888888888877776653       112223


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (510)
                      .+++.+...|.+.|++++|...|++..+         ++    ..+|+.+...|.+.|+.++|+++|++.....      
T Consensus       361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g------  421 (697)
T PLN03081        361 VANTALVDLYSKWGRMEDARNVFDRMPR---------KN----LISWNALIAGYGNHGRGTKAVEMFERMIAEG------  421 (697)
T ss_pred             eehHHHHHHHHHCCCHHHHHHHHHhCCC---------CC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence            4556667777777777777777665421         11    1245666777777777777777776654321      


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (510)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (510)
                      ..|+ ..++..+...+...|..++|.++|+.+.+..     +..|+ ...|..+...|.+.|+.++|.+.++
T Consensus       422 ~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p~-~~~y~~li~~l~r~G~~~eA~~~~~  486 (697)
T PLN03081        422 VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKPR-AMHYACMIELLGREGLLDEAYAMIR  486 (697)
T ss_pred             CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCCC-ccchHhHHHHHHhcCCHHHHHHHHH
Confidence            1222 2345555556666666666666666554310     11111 2234445555555555555555544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.71  E-value=3.7e-14  Score=120.12  Aligned_cols=270  Identities=17%  Similarity=0.156  Sum_probs=208.6

Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh--h
Q 010446          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI--L  243 (510)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~  243 (510)
                      +.-|.-+.-..+.++|+..|..+++.       +|....+...+|++|...|+.+.|+...+..++.      ++.+  .
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~-------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~q  105 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQE-------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQ  105 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhc-------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchHH
Confidence            34455666788999999999887753       3667777899999999999999999988776642      2222  4


Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 010446          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (510)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (510)
                      ...++..+|.-|+..|-++.|+..|....+.        ......++..|..+|....++++|++..++...+..+   +
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~  174 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---T  174 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---c
Confidence            5678899999999999999999999988763        2233567888999999999999999998887775322   2


Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (510)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (510)
                      ....++..|+.++..+....+.+.|...+.++++..++          ...+-..+|.+....|+++.|++.++.+++- 
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~----------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-  243 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK----------CVRASIILGRVELAKGDYQKAVEALERVLEQ-  243 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc----------ceehhhhhhHHHHhccchHHHHHHHHHHHHh-
Confidence            34558888999999999999999999999999987332          2344467999999999999999999988763 


Q ss_pred             HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                            ++.....+...|..+|...|+.++.+..+.++.+..      ..+   .+...++..-....-.+.|..+..+-
T Consensus       244 ------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~------~g~---~~~l~l~~lie~~~G~~~Aq~~l~~Q  308 (389)
T COG2956         244 ------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN------TGA---DAELMLADLIELQEGIDAAQAYLTRQ  308 (389)
T ss_pred             ------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc------CCc---cHHHHHHHHHHHhhChHHHHHHHHHH
Confidence                  455667888899999999999999999999998842      112   22344455555555556666665554


Q ss_pred             HH
Q 010446          484 LY  485 (510)
Q Consensus       484 l~  485 (510)
                      +.
T Consensus       309 l~  310 (389)
T COG2956         309 LR  310 (389)
T ss_pred             Hh
Confidence            43

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.71  E-value=1.1e-14  Score=131.43  Aligned_cols=228  Identities=14%  Similarity=0.035  Sum_probs=167.2

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 010446          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (510)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (510)
                      .+..+.++..+.+++....    .+.+..+..++.+|.+|...|++++|+..|++++++        .|....+++.+|.
T Consensus        39 ~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~  106 (296)
T PRK11189         39 TLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGI  106 (296)
T ss_pred             chHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Confidence            3566777777777765321    233456788999999999999999999999999987        5667899999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH
Q 010446          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (510)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (510)
                      ++...|++++|+..|++++++        .|....++.++|.++...|++++|++.++++++.       .|+++.. ..
T Consensus       107 ~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~~~~~-~~  170 (296)
T PRK11189        107 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPNDPYR-AL  170 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHH-HH
Confidence            999999999999999999985        4555678899999999999999999999999987       4444431 12


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (510)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (510)
                      +   ..+....+++++|+..+.++....       ++..   + ..+.++...|+..++ ..++.+.+...... .-.|.
T Consensus       171 ~---~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~  234 (296)
T PRK11189        171 W---LYLAESKLDPKQAKENLKQRYEKL-------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAER  234 (296)
T ss_pred             H---HHHHHccCCHHHHHHHHHHHHhhC-------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHH
Confidence            1   223445788999999997765321       1111   1 134455556666544 23444432111100 01244


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ...++.++|.++..+|++++|+.+|++++++.
T Consensus       235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        235 LCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            56789999999999999999999999999754

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.70  E-value=8e-14  Score=140.08  Aligned_cols=144  Identities=11%  Similarity=-0.063  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-h--h
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK-Y--K  407 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~  407 (510)
                      +...+|..|...+++++|+.+|+.++.-....   ...+.. ......|...|...+++++|..++++..+...- .  .
T Consensus       329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~---~~~~~~-~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~  404 (822)
T PRK14574        329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKT---FRNSDD-LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY  404 (822)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHhhccccc---cCCCcc-hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence            33445778888888888888888876542110   011111 122356788889999999999999987762210 0  1


Q ss_pred             ----CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          408 ----GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       408 ----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                          ...+|+.......++.++...|++.+|++.+++.+..        .|.....+..+|.++...|.+.+|...++.+
T Consensus       405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a  476 (822)
T PRK14574        405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRIALASIYLARDLPRKAEQELKAV  476 (822)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                1245677788888999999999999999999998773        4555667788999999999999999999777


Q ss_pred             HHH
Q 010446          484 LYI  486 (510)
Q Consensus       484 l~~  486 (510)
                      ..+
T Consensus       477 ~~l  479 (822)
T PRK14574        477 ESL  479 (822)
T ss_pred             hhh
Confidence            654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.70  E-value=3.4e-13  Score=142.90  Aligned_cols=315  Identities=14%  Similarity=0.101  Sum_probs=234.3

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHH
Q 010446          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (510)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (510)
                      ..+..+...|++++|...+.++.+...... ..............++.++...|++++|...+++++.....  .+....
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~  490 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRN-IELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL--TWYYSR  490 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccC-cccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--ccHHHH
Confidence            345566788999999999988766532210 00011224455666888999999999999999998875321  122223


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                      ..+...+|.++...|++++|...+++++...... + +......++..+|.++...|++++|..++++++.+.....+..
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  568 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQH-D-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ  568 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            4556789999999999999999999999987754 2 2234456788999999999999999999999999987764433


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (510)
                      .+.....+..+|.++...|++++|...+.+++.+.+...   ......++..+|.++...|++++|...+.++..+....
T Consensus       569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~  645 (903)
T PRK04841        569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG  645 (903)
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            343445567889999999999999999999999876431   23345677789999999999999999999987764431


Q ss_pred             ccC--------------------------------C---CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010446          363 NYM--------------------------------S---LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (510)
Q Consensus       363 ~~~--------------------------------~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (510)
                      ...                                .   .........+..++.++...|++++|...+++++.......
T Consensus       646 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g  725 (903)
T PRK04841        646 RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR  725 (903)
T ss_pred             cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            000                                0   00000111235788899999999999999999999865542


Q ss_pred             CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446          408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (510)
Q Consensus       408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (510)
                        .....+.++..+|.++...|+.++|...+.+++++...
T Consensus       726 --~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        726 --LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             --chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence              33456678889999999999999999999999998644

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.70  E-value=2.6e-13  Score=136.50  Aligned_cols=324  Identities=10%  Similarity=0.005  Sum_probs=225.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +...+..+...|++++|+++|+++++.          .|..+.++..++..+...++.++|+..++++....       |
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~----------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-------p  167 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKK----------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-------P  167 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-------c
Confidence            444577888999999999999999988          77778888888999999999999999998876553       3


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH---------------------------------------------
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES---------------------------------------------  235 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------------  235 (510)
                      .... +..++.++...++..+|+..++++++....                                             
T Consensus       168 ~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~  246 (822)
T PRK14574        168 TVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAA  246 (822)
T ss_pred             chHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHH
Confidence            3222 234455555567776788888888765100                                             


Q ss_pred             ------------------------------hcC---C---CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          236 ------------------------------RYG---K---TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       236 ------------------------------~~~---~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                                                    ...   .   .++....+....-.++...|++.+++..|+....      
T Consensus       247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~------  320 (822)
T PRK14574        247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA------  320 (822)
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh------
Confidence                                          000   0   0001111122222233334444444444443321      


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                       +..+.-..+....|..|...+++++|+.+|++++.-.....  ..+........|-..|...+++++|..++++..+..
T Consensus       321 -~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~  397 (822)
T PRK14574        321 -EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT  397 (822)
T ss_pred             -cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence             12222234667789999999999999999999876321100  112223334567888999999999999999988632


Q ss_pred             H-hhc----cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHH
Q 010446          360 K-DSN----YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  434 (510)
Q Consensus       360 ~-~~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  434 (510)
                      . ...    .....++........++.++...|++.+|++.+++.+..        .|........+|.++...|.+.+|
T Consensus       398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A  469 (822)
T PRK14574        398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRIALASIYLARDLPRKA  469 (822)
T ss_pred             CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHH
Confidence            2 000    011234555677788999999999999999999998764        466678888999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      +..++.+..+        +|....+...+|.++..+|++.+|.....++++..
T Consensus       470 ~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~  514 (822)
T PRK14574        470 EQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRS  514 (822)
T ss_pred             HHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence            9999877763        56667788999999999999999999998887755

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.70  E-value=1.4e-13  Score=131.91  Aligned_cols=285  Identities=19%  Similarity=0.134  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (510)
                      ...+...|...+..|++++|+.++.++++..       |....+|+.||.+|..+|+.+++....-.|-.+     .   
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~---  203 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----N---  203 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----C---
Confidence            4566777888888999999999999988765       666777999999999999999999888776543     2   


Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      |.....|..++.....+|++++|.-+|.+|+..        .|.........+.+|.++|+...|...|.+.+.....  
T Consensus       204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~--  273 (895)
T KOG2076|consen  204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP--  273 (895)
T ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc--
Confidence            222367888999999999999999999999997        4556778888999999999999999999999886320  


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (510)
                       .+...........+..+...++-+.|.+.++.++......    ...+    .+..++.++....+++.|.........
T Consensus       274 -~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~----~~~e----d~ni~ael~l~~~q~d~~~~~i~~~~~  344 (895)
T KOG2076|consen  274 -VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE----ASLE----DLNILAELFLKNKQSDKALMKIVDDRN  344 (895)
T ss_pred             -hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc----cccc----HHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence             0111233344455777888888899999999988842221    1111    224567777777777777665543332


Q ss_pred             ----------------------HHH----------------------------------HhhCCCChhHHHHHHHHHHHH
Q 010446          402 ----------------------ITE----------------------------------KYKGKEHPSFVTHLLNLAASY  425 (510)
Q Consensus       402 ----------------------~~~----------------------------------~~~~~~~~~~~~~~~~la~~~  425 (510)
                                            +..                                  ........+....+..++..|
T Consensus       345 r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al  424 (895)
T KOG2076|consen  345 RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADAL  424 (895)
T ss_pred             cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Confidence                                  000                                  000001223455678899999


Q ss_pred             HhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ...|++.+|+.++......       ........|..+|.+|..+|.+++|+++|++++.+.
T Consensus       425 ~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~  479 (895)
T KOG2076|consen  425 TNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA  479 (895)
T ss_pred             HhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            9999999999999887762       223346789999999999999999999999998743

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.69  E-value=6e-14  Score=120.61  Aligned_cols=314  Identities=14%  Similarity=0.047  Sum_probs=241.0

Q ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010446          165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL  244 (510)
Q Consensus       165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (510)
                      ...-|.-++...++++|+..+.+.+.....    .......+-.+..+..++|.|++++.+---.++.+...  .+....
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~   82 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFL   82 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            344556667788889998888877665422    12333446677788899999999988877767666554  344566


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (510)
                      ..++.+++..+....++.+++.+-+..+.+-    +... ..-......+|..+..++.+++++++|++|+.+.....  
T Consensus        83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--  156 (518)
T KOG1941|consen   83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND--  156 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--
Confidence            7889999999999999999998887776642    2111 22235566789999999999999999999999886652  


Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (510)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (510)
                      +......++..||.++....++++|.-+..+|.++.......+.+......+++.++..+..+|+.-.|.++.+++.++.
T Consensus       157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            22235677889999999999999999999999999887533333344456677899999999999999999999999998


Q ss_pred             HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHH-----HHH
Q 010446          404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-----AEK  478 (510)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~  478 (510)
                      -...  +.+..+.....+|.+|...|+.+.|..-|++|..+....  .+......++...|.++....-..+     |++
T Consensus       237 l~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale  312 (518)
T KOG1941|consen  237 LQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRALE  312 (518)
T ss_pred             HHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhH
Confidence            7763  567778888999999999999999999999999988765  2344555677777877776555554     999


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 010446          479 LVLEALYIREIAFGKDS  495 (510)
Q Consensus       479 ~~~~al~~~~~~~~~~~  495 (510)
                      .-++++++..++ |..+
T Consensus       313 ~n~r~levA~~I-G~K~  328 (518)
T KOG1941|consen  313 FNTRLLEVASSI-GAKL  328 (518)
T ss_pred             HHHHHHHHHHHh-hhhH
Confidence            999999998775 4343

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=8.8e-14  Score=121.64  Aligned_cols=298  Identities=14%  Similarity=0.078  Sum_probs=230.2

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      .+....-.++...|...+--+- .       ...-+.+...+..+|.+++..|++.+|+..|+++..+.       |...
T Consensus       202 ka~Aq~~~~~hs~a~~t~l~le-~-------~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-------py~i  266 (564)
T KOG1174|consen  202 KALAQMFNFKHSDASQTFLMLH-D-------NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-------PDNV  266 (564)
T ss_pred             HHHHHHHhcccchhhhHHHHHH-h-------hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-------hhhh
Confidence            3444445555555554332221 1       22267778899999999999999999999999987653       6666


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                      ...-..|.++...|+++.-..+....+.+..        ..+.-++.-+...+...++..|+.+-+++++.        .
T Consensus       267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~  330 (564)
T KOG1174|consen  267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--------YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------E  330 (564)
T ss_pred             hhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------C
Confidence            6677788888899999887777666665432        12334556677888899999999999999986        5


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (510)
                      +....++..-|.++...|+.++|.-.|+.|..+        .|....+|..|-.+|...|++.||....+.++..+... 
T Consensus       331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-  401 (564)
T KOG1174|consen  331 PRNHEALILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-  401 (564)
T ss_pred             cccchHHHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-
Confidence            556788889999999999999999999999875        35667889999999999999999999999999886542 


Q ss_pred             cCCCCChHHHHHHHHHH-HHHHH-cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          364 YMSLDDSIMENMRIDLA-ELLHI-VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                               +.++.-+| .++.. ----++|..++++++.+        .|....+...+|.++...|++++++.++++.
T Consensus       402 ---------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~  464 (564)
T KOG1174|consen  402 ---------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKH  464 (564)
T ss_pred             ---------hhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence                     33334443 33332 22347899999998874        5777888889999999999999999999999


Q ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      +..+        ++ ...+..||.++...+.+++|+++|..|+++-
T Consensus       465 L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  465 LIIF--------PD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             Hhhc--------cc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            9853        22 2456889999999999999999999998754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.69  E-value=1e-14  Score=133.14  Aligned_cols=208  Identities=14%  Similarity=0.142  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      -+..|..+.+.|+..+|.-.|+.++..          +|.++++|..||.+....++-..|+..+++++++.       |
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkq----------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P  350 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQ----------DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-------P  350 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhh----------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------C
Confidence            355788899999999999999999987          99999999999999999999999999999999875       6


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh-----------cC----------------------CCCh--hHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-----------YG----------------------KTSI--LLV  245 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~----------------------~~~~--~~~  245 (510)
                      ....++..||..|...|.-.+|+.++.+-+....+.           .+                      ...+  ...
T Consensus       351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp  430 (579)
T KOG1125|consen  351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP  430 (579)
T ss_pred             ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence            667779999999999999999999998876542000           00                      0001  234


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      .+...||.+|...|+|++|+++|+.|+..        .|.....|+.||-.+....+.++|+..|++|+++        .
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------q  494 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------Q  494 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------C
Confidence            56778999999999999999999999986        6778899999999999999999999999999996        5


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                      |..+++.+|||..|+.+|.|++|.++|-.|+.+.+.
T Consensus       495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            788899999999999999999999999999999776

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.2e-14  Score=126.98  Aligned_cols=291  Identities=15%  Similarity=0.077  Sum_probs=225.9

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (510)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (510)
                      .+.......+..++...+|..|+..+..|+++          .|+.+..|.+.+.+++..|+|++|.-..++..++-.. 
T Consensus        47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-  115 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM----------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-  115 (486)
T ss_pred             HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh----------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-
Confidence            34455667888899999999999999999998          7777899999999999999999999998887766422 


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH--------HHHHHhcCC--CChhHHHHHHHHHHHHhhcCCHHHHH
Q 010446          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI--------NVLESRYGK--TSILLVTSLLGMAKVLGSIGRAKKAV  265 (510)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~  265 (510)
                            ........+.++...++..+|...++..-        .....+...  ..|....+...-+.++...|++++|.
T Consensus       116 ------~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~  189 (486)
T KOG0550|consen  116 ------FSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ  189 (486)
T ss_pred             ------ccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence                  22235667777777777777776665221        111111111  12444556667789999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHH
Q 010446          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG----ENDGRVGMAMCSLAHAKCA  341 (510)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~  341 (510)
                      ..--..+++        ++....++..-|.++...++.+.|+..|++++.+-.....    ...+.....+..-|.-.++
T Consensus       190 ~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk  261 (486)
T KOG0550|consen  190 SEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK  261 (486)
T ss_pred             HHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence            877777665        4556788888899999999999999999999986322100    0123344556677888999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010446          342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  421 (510)
Q Consensus       342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  421 (510)
                      .|++.+|.+.|..++.+.+      .+....+.+|.+.|.+..+.|+..+|+.-.+.++.+        ++....++...
T Consensus       262 ~G~y~~A~E~Yteal~idP------~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~r  327 (486)
T KOG0550|consen  262 NGNYRKAYECYTEALNIDP------SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRR  327 (486)
T ss_pred             ccchhHHHHHHHHhhcCCc------cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHH
Confidence            9999999999999999833      234456778999999999999999999999999986        46678899999


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHH
Q 010446          422 AASYSRSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~  445 (510)
                      |.++...++|++|.+.|+++++..
T Consensus       328 a~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  328 ANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999998753

>PLN03077 Protein ECB2; Provisional

Probab=99.65  E-value=3.2e-13  Score=141.21  Aligned_cols=140  Identities=15%  Similarity=0.087  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (510)
                      .+|+.+...|...|+.++|+++|++..+.     ...|+..    ++..+...+.+.|++++|..+|++..+..     .
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd~~----T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----g  620 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPDEV----TFISLLCACSRSGMVTQGLEYFHSMEEKY-----S  620 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCcc----cHHHHHHHHhhcChHHHHHHHHHHHHHHh-----C
Confidence            45777788888888888888888887653     1233332    34556677888899999999988766332     1


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH------------HHH-------------HHHhCCCChhhHHHHHHHH
Q 010446          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICL------------DIM-------------TKTVGPDDQSISFPMLHLG  464 (510)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------~~~-------------~~~~~~~~~~~~~~~~~la  464 (510)
                      ..|+ ...|..+..++.+.|++++|.+.++++-            ..+             ++.. .-.|.....+..++
T Consensus       621 i~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~-~l~p~~~~~y~ll~  698 (857)
T PLN03077        621 ITPN-LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF-ELDPNSVGYYILLC  698 (857)
T ss_pred             CCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hhCCCCcchHHHHH
Confidence            2233 3678888999999999999998887741            000             0111 11244455667788


Q ss_pred             HHHHhcCChHHHHHHHHHHHH
Q 010446          465 ITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       465 ~~~~~~g~~~~A~~~~~~al~  485 (510)
                      .+|...|++++|.+..+...+
T Consensus       699 n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        699 NLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHCCChHHHHHHHHHHHH
Confidence            888888888888887776654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.65  E-value=2.7e-14  Score=130.45  Aligned_cols=268  Identities=16%  Similarity=0.146  Sum_probs=190.1

Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010446          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (510)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (510)
                      +..|..+++.|+..+|.-.|+.++..       +|..+.+|..||.+....++-..|+..+++++++        +|...
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkq-------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nl  353 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQ-------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNL  353 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhh-------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccH
Confidence            46788889999999999999988753       3888888999999999999999999999999886        36667


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc--CCC-CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR--GTE-SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      .++..||..|...|.-.+|..++.+-+....+..  ... .+....    ...-......+..-.++|..+..   ..  
T Consensus       354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~---~~--  424 (579)
T KOG1125|consen  354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAAR---QL--  424 (579)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHH---hC--
Confidence            8899999999999999999999988876421100  000 000000    00000000001111222222221   11  


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                       .......+...||.+|...|+|++|+++|+.|+..       .|++   ..+|+.||-.+....+.++|+..|++|+++
T Consensus       425 -~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-------~Pnd---~~lWNRLGAtLAN~~~s~EAIsAY~rALqL  493 (579)
T KOG1125|consen  425 -PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-------KPND---YLLWNRLGATLANGNRSEEAISAYNRALQL  493 (579)
T ss_pred             -CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-------CCch---HHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence             11134467788999999999999999999999987       3333   457899999999999999999999999986


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh--hHHHHHHHHHHHHhcCChHHH
Q 010446          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS--ISFPMLHLGITLYHLNRDKEA  476 (510)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A  476 (510)
                              .|..++++++||..|..+|.|++|.++|-.|+.+.++..+.....  .-.+|..|-.++...++.+-+
T Consensus       494 --------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  494 --------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             --------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence                    477889999999999999999999999999999987743322211  112344444555666665533

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.65  E-value=5.6e-13  Score=113.95  Aligned_cols=284  Identities=16%  Similarity=0.084  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (510)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (510)
                      ......++.++..|...|+-.-|+.-+.+++++          .|+...+....|.+++.+|.+++|+.-|+.++.....
T Consensus        69 p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s  138 (504)
T KOG0624|consen   69 PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS  138 (504)
T ss_pred             chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC
Confidence            345667999999999999999999999999998          8999999999999999999999999999998865421


Q ss_pred             cCCCch--------HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHH
Q 010446          195 LKDDEP--------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE  266 (510)
Q Consensus       195 ~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  266 (510)
                      .+....        .-...+......+...|++..|+.+....+++        .|..+..+...+.+|...|+...|+.
T Consensus       139 ~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~  210 (504)
T KOG0624|consen  139 NGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIH  210 (504)
T ss_pred             cchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHH
Confidence            111000        00112334455567789999999999998886        36667788899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH---------HH
Q 010446          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL---------AH  337 (510)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------a~  337 (510)
                      -++.+-++        ..+....++.++.+++..|+.+.++...++++++     .++|......|-.+         +.
T Consensus       211 Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e  277 (504)
T KOG0624|consen  211 DLKQASKL--------SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAE  277 (504)
T ss_pred             HHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHH
Confidence            99988776        3445678899999999999999999999999985     34544433333322         23


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCC-ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010446          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT  416 (510)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  416 (510)
                      -....++|.++++..++.++.       .|. .+........+..|+..-|++.+|+....+++.+        .|+.+.
T Consensus       278 ~~ie~~~~t~cle~ge~vlk~-------ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~  342 (504)
T KOG0624|consen  278 QAIEEKHWTECLEAGEKVLKN-------EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQ  342 (504)
T ss_pred             HHHhhhhHHHHHHHHHHHHhc-------CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHH
Confidence            345667777777777777665       233 4444455566788999999999999999998874        577788


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          417 HLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      ++...|..|.....|+.|+.-|++|.+.
T Consensus       343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  343 VLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999885

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.65  E-value=1.9e-12  Score=122.27  Aligned_cols=320  Identities=16%  Similarity=0.120  Sum_probs=224.4

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh----CC-------hHHHHHHHHHHHHhhh
Q 010446          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI----GD-------LKFVQSLLDMMSGIVD  193 (510)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~-------~~~A~~~~~~~~~~~~  193 (510)
                      ..+.-..|.+++++++..+++.......     ..-.+..+..+|.+|..+    ..       ..++++.++++.+.  
T Consensus       401 klc~e~l~~~eegldYA~kai~~~~~~~-----~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--  473 (799)
T KOG4162|consen  401 KLCIERLKLVEEGLDYAQKAISLLGGQR-----SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--  473 (799)
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHhhhhh-----hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--
Confidence            3455678899999999999998653322     455567778888877532    11       23444455555443  


Q ss_pred             hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (510)
                        ++.+|   .+.+.++.-|..+++.+.|..+.++++++.       ....+.++..++.++...+++.+|+...+.+++
T Consensus       474 --d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~  541 (799)
T KOG4162|consen  474 --DPTDP---LVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALE  541 (799)
T ss_pred             --CCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence              34444   447899999999999999999999999873       224467889999999999999999999999988


Q ss_pred             HHHHhcCCCC------------cchHHH-HHHHH----------------------HHHHHcCChHHHHHHHHHHHHHHH
Q 010446          274 ILELNRGTES------------ADLVLP-LFSLG----------------------SLFIKEGKAVDAESVFSRILKIYT  318 (510)
Q Consensus       274 ~~~~~~~~~~------------~~~~~~-~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~~  318 (510)
                      -.....+-.+            .....+ ...|+                      .+....++..+|.+...++.....
T Consensus       542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a  621 (799)
T KOG4162|consen  542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA  621 (799)
T ss_pred             HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence            7544211000            000000 00000                      011111233344444444433332


Q ss_pred             HH----------------cCCCChH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 010446          319 KV----------------YGENDGR--VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  380 (510)
Q Consensus       319 ~~----------------~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la  380 (510)
                      ..                .+++++.  ....+...+..+...++.++|..++.++-.+.          +.....++..|
T Consensus       622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~----------~l~~~~~~~~G  691 (799)
T KOG4162|consen  622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID----------PLSASVYYLRG  691 (799)
T ss_pred             hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc----------hhhHHHHHHhh
Confidence            11                0112222  23345567888889999999999998887773          44467788899


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH--HHHHHHHHHHHHhCCCChhhHH
Q 010446          381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER--LLRICLDIMTKTVGPDDQSISF  458 (510)
Q Consensus       381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~  458 (510)
                      .++...|++.+|.+.|..|+.+        +|+...+...+|.++.+.|+..-|..  ++..++++        +|...+
T Consensus       692 ~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~e  755 (799)
T KOG4162|consen  692 LLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHE  755 (799)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHH
Confidence            9999999999999999999886        34555677889999999999888877  89999885        577778


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          459 PMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      +|+.+|.++..+|+.++|.++|+-|+++.+.
T Consensus       756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  756 AWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999997644

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=3.6e-13  Score=117.87  Aligned_cols=267  Identities=15%  Similarity=0.150  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ...+...+..++..|++++|+..|+++.-+          +|.........|..+...|+++.-..+......+.+    
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~----  297 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCA----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK----  297 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhhC----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh----
Confidence            344677889999999999999999999877          888889999999999999999988887777665541    


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                         ..+.-|+.-+...+...++..|+.+-+++++.        ++....++..-|..+...|+.++|+-.|+.|..+   
T Consensus       298 ---~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---  363 (564)
T KOG1174|consen  298 ---YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML---  363 (564)
T ss_pred             ---cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc---
Confidence               22333667778888999999999999999875        2444667888999999999999999999999887   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH-HHHHHC-CCHHHHHHHHHHH
Q 010446          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAKCAN-GNAEEAVELYKKA  355 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~-g~~~~A~~~~~~a  355 (510)
                           .|....+|..|-.+|...|++.+|....+.++...        +..+.++..+| .++... .--++|.++++++
T Consensus       364 -----ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~  430 (564)
T KOG1174|consen  364 -----APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKS  430 (564)
T ss_pred             -----chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence                 45667899999999999999999999999888864        33445666665 444332 3347899999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (510)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (510)
                      +.+          .|....+-..+|+++...|++..++.++++.+..+.        + ...+..||.+....+.+.+|.
T Consensus       431 L~~----------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--------D-~~LH~~Lgd~~~A~Ne~Q~am  491 (564)
T KOG1174|consen  431 LKI----------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--------D-VNLHNHLGDIMRAQNEPQKAM  491 (564)
T ss_pred             hcc----------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--------c-cHHHHHHHHHHHHhhhHHHHH
Confidence            887          223334447899999999999999999999988642        2 256788999999999999999


Q ss_pred             HHHHHHHHH
Q 010446          436 RLLRICLDI  444 (510)
Q Consensus       436 ~~~~~al~~  444 (510)
                      ++|..|+.+
T Consensus       492 ~~y~~ALr~  500 (564)
T KOG1174|consen  492 EYYYKALRQ  500 (564)
T ss_pred             HHHHHHHhc
Confidence            999999985

>TIGR00540 hemY_coli hemY protein

Probab=99.63  E-value=6e-13  Score=126.38  Aligned_cols=280  Identities=13%  Similarity=0.047  Sum_probs=195.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEV-AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      ++-.+......|+++.|..++.++.+.          .|... .+....+.++...|+++.|...++.+.+..       
T Consensus       121 ~llaA~aa~~~g~~~~A~~~l~~a~~~----------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-------  183 (409)
T TIGR00540       121 LIKAAEAAQQRGDEARANQHLEEAAEL----------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-------  183 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence            445678888999999999999998765          33322 344456899999999999999999987764       


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                      |....++..++.++...|++++|.+.+.+..+..     ..++. ...........+...+..+++.+.+.++.+.... 
T Consensus       184 P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~-  257 (409)
T TIGR00540       184 PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR-  257 (409)
T ss_pred             CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH-
Confidence            3333557899999999999999999998887651     12222 2222222222223444455555566655544211 


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                         ..+.....+..++..+...|++++|.+.++++++..     ++++..... ..........++.+.+.+.++++++.
T Consensus       258 ---~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       258 ---HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             ---HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh
Confidence               122457788889999999999999999999999852     222221101 11223334468888898888888876


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (510)
                             .|+++. ...+..+|.++.+.|++++|.++|+++....      ..|+... +..+|.++...|+.++|.+++
T Consensus       329 -------~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~  393 (409)
T TIGR00540       329 -------VDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMR  393 (409)
T ss_pred             -------CCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Confidence                   455553 3455789999999999999999999543332      1343333 558999999999999999999


Q ss_pred             HHHHHHHHH
Q 010446          439 RICLDIMTK  447 (510)
Q Consensus       439 ~~al~~~~~  447 (510)
                      ++++...-.
T Consensus       394 ~~~l~~~~~  402 (409)
T TIGR00540       394 QDSLGLMLA  402 (409)
T ss_pred             HHHHHHHhc
Confidence            999886543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03077 Protein ECB2; Provisional

Probab=99.62  E-value=2.8e-13  Score=141.72  Aligned_cols=163  Identities=13%  Similarity=0.031  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010446          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (510)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (510)
                      ..+++.+...|.+.|++++|.+.|++..+          + ...+|+.+...|...|+.++|+.+|+++...      ..
T Consensus       424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------~~  486 (857)
T PLN03077        424 VVVANALIEMYSKCKCIDKALEVFHNIPE----------K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT------LK  486 (857)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC------CC
Confidence            34555566666666666666666654321          1 1235666666677777777777777776531      12


Q ss_pred             CCChHHHHH-------------------------------HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010446          367 LDDSIMENM-------------------------------RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (510)
Q Consensus       367 ~~~~~~~~~-------------------------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (510)
                      |+.......                               .+.+...|.+.|+.++|...|++.            ....
T Consensus       487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------------~~d~  554 (857)
T PLN03077        487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------------EKDV  554 (857)
T ss_pred             CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------------CCCh
Confidence            332222111                               123345666666666666665542            1123


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                      .+|+.+...|...|+.++|+++|+++.+.      .-.|+. .++..+-..+.+.|+.++|..+|++..+
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~  617 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEE  617 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence            56777888888888888888888877652      112222 3345555667777777777777776653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.61  E-value=2.9e-12  Score=120.52  Aligned_cols=295  Identities=15%  Similarity=0.073  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ....+..+...|++++|...++++++.          .|....++.. +..+...|++..+.....+++..   ..+..|
T Consensus        46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~----------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~  111 (355)
T cd05804          46 AHVEALSAWIAGDLPKALALLEQLLDD----------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL---WAPENP  111 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc---cCcCCC
Confidence            445677889999999999999999987          5555555554 66666666665555544444433   245556


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      .....+..+|.++..+|++++|+..++++++..        |....++..+|.++...|++++|+.++++++.....   
T Consensus       112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---  180 (355)
T cd05804         112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---  180 (355)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---
Confidence            666667889999999999999999999999863        333567889999999999999999999999886421   


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA--MCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                       +.......+..+|.++...|++++|+..+++++...     +........  ...+...+...|....+..+ +.+...
T Consensus       181 -~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~  253 (355)
T cd05804         181 -SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADY  253 (355)
T ss_pred             -CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHH
Confidence             122234567789999999999999999999985431     111112111  11223334445543333333 222222


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010446          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERL  437 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (510)
                      ....   .+. ..........+.++...|+.++|...++.......... ..............+.++...|++++|...
T Consensus       254 ~~~~---~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~  329 (355)
T cd05804         254 AAWH---FPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALEL  329 (355)
T ss_pred             HHhh---cCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHH
Confidence            1110   111 11122224688888999999999999998877665410 011223455667789999999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 010446          438 LRICLDIMTKTVGP  451 (510)
Q Consensus       438 ~~~al~~~~~~~~~  451 (510)
                      +..++.......|.
T Consensus       330 L~~al~~a~~~ggs  343 (355)
T cd05804         330 LGPVRDDLARIGGS  343 (355)
T ss_pred             HHHHHHHHHHhCCc
Confidence            99999988766443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=7.8e-14  Score=122.09  Aligned_cols=287  Identities=15%  Similarity=0.048  Sum_probs=221.9

Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (510)
                      .+.-....|..++...+|.+|+..+..++...       |..+..|.+.+..++..|+|++|....++.+++-       
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-------  113 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-------  113 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecC-------
Confidence            34445567778889999999999999999876       4446668899999999999999999998887752       


Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHH--------HHHHHhcCC--CCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI--------TILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVF  310 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~  310 (510)
                       +.........+.++...++..+|...++..-        ...+.....  ..|........-+.|+...|++++|...-
T Consensus       114 -d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea  192 (486)
T KOG0550|consen  114 -DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA  192 (486)
T ss_pred             -CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence             2334456667777777777777776655221        111111111  12444555566788999999999998877


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH---------HHHHHHHHHH
Q 010446          311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI---------MENMRIDLAE  381 (510)
Q Consensus       311 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---------~~~~~~~la~  381 (510)
                      -..+++        ++....++...|.++...++.+.|+..|++++.+       +|++..         ....+..-|+
T Consensus       193 ~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-------dpdh~~sk~~~~~~k~le~~k~~gN  257 (486)
T KOG0550|consen  193 IDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-------DPDHQKSKSASMMPKKLEVKKERGN  257 (486)
T ss_pred             HHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-------ChhhhhHHhHhhhHHHHHHHHhhhh
Confidence            666653        4556677788899999999999999999999987       344332         2344556688


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHH
Q 010446          382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (510)
Q Consensus       382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (510)
                      -..+.|++.+|.+.|.+++.+...    +....+..|.+.|.+....|+..+|+.-.+.++.+        ++..+.++.
T Consensus       258 ~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall  325 (486)
T KOG0550|consen  258 DAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALL  325 (486)
T ss_pred             hHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHH
Confidence            888999999999999999987533    23456778999999999999999999999999986        678889999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          462 HLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       462 ~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      ..|.++...++|++|.+.|+++++....
T Consensus       326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  326 RRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999986644

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.8e-12  Score=117.77  Aligned_cols=260  Identities=18%  Similarity=0.177  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      ..-+.+...+...++..|+..|..++++          . .....+.+.+.+|+..|.+.+.+.....+.+.......+.
T Consensus       226 ~ek~lgnaaykkk~f~~a~q~y~~a~el----------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~  294 (539)
T KOG0548|consen  226 KEKELGNAAYKKKDFETAIQHYAKALEL----------A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY  294 (539)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhH----------h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence            3556778889999999999999999998          4 4556677888899999999888888877766543333333


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      ..++.++..+|..|...++++.|+.+|++++...+.                ..+.......++++...+...-+     
T Consensus       295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----------------~~~ls~lk~~Ek~~k~~e~~a~~-----  353 (539)
T KOG0548|consen  295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----------------PDLLSKLKEAEKALKEAERKAYI-----  353 (539)
T ss_pred             HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----------------HHHHHHHHHHHHHHHHHHHHHhh-----
Confidence            446666777899999999999999999998775322                23333444455555444433322     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                         .|..+.--..-|..++..|+|..|+..|.+++..        .|.....|.|.|.+|..+|.+..|+...+.++++ 
T Consensus       354 ---~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-  421 (539)
T KOG0548|consen  354 ---NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-  421 (539)
T ss_pred             ---ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence               3444555566689999999999999999998874        5778889999999999999999999998888877 


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (510)
                               ++.....|..-|.++..+.+|++|.+.|+++++.        +|....+...+..+...+.......+.++
T Consensus       422 ---------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~~~~~~~ee~~~  484 (539)
T KOG0548|consen  422 ---------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQRGDETPEETKR  484 (539)
T ss_pred             ---------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence                     4455677888899999999999999999998874        35555666666666665444444444444


Q ss_pred             H
Q 010446          440 I  440 (510)
Q Consensus       440 ~  440 (510)
                      .
T Consensus       485 r  485 (539)
T KOG0548|consen  485 R  485 (539)
T ss_pred             h
Confidence            4

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.57  E-value=1.1e-12  Score=115.40  Aligned_cols=182  Identities=14%  Similarity=0.049  Sum_probs=148.1

Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                      ..+.....+..+|..+...|++++|+..+++++...     ++++....++..+|.++...|++++|+..++++++.   
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---   99 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---   99 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Confidence            345667889999999999999999999999998753     455666678899999999999999999999999987   


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhhCCCChhHHH--------------HHH
Q 010446          362 SNYMSLDDSIMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVT--------------HLL  419 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~  419 (510)
                          .|+++....++..+|.++...        |++++|+..+++++...     +.++....              ...
T Consensus       100 ----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~  170 (235)
T TIGR03302       100 ----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKEL  170 (235)
T ss_pred             ----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHH
Confidence                345555556778899999876        78999999999988653     22222111              124


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                      .+|.+|...|++.+|+..++++++..     +++|....++..+|.++...|++++|..+++....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            67899999999999999999999853     45677788999999999999999999998877654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.57  E-value=1.8e-11  Score=113.59  Aligned_cols=320  Identities=14%  Similarity=0.100  Sum_probs=220.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .++..+...+..++|.+.+...++.+..          .|++++++...|..+...|+-++|......++...       
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k----------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-------   71 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKK----------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-------   71 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHh----------CCccchhHHhccchhhcccchHHHHHHHHHHhccC-------
Confidence            3677888889999999999999988875          88889999999999999999999999998877532       


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      +....+|..+|.++....+|++|+++|+.|+.+        .++....+..++....++++++-....-.+.++.     
T Consensus        72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-----  138 (700)
T KOG1156|consen   72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-----  138 (700)
T ss_pred             cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----
Confidence            333456899999999999999999999999986        2455677888888888999998888777777765     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC-------------------------------ChH-
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN-------------------------------DGR-  327 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~-  327 (510)
                         .|..-..|...+..+...|++..|....+...........+.                               .+. 
T Consensus       139 ---~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i  215 (700)
T KOG1156|consen  139 ---RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI  215 (700)
T ss_pred             ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH
Confidence               344556777888888888888888877766554432110000                               000 


Q ss_pred             --HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH-HHHHHHHH----------HHHHHc-CC-----
Q 010446          328 --VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM-ENMRIDLA----------ELLHIV-GR-----  388 (510)
Q Consensus       328 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~la----------~~~~~~-g~-----  388 (510)
                        -.......+.++..++++++|...|...+...       |+.... ......+|          .+|... .+     
T Consensus       216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e  288 (700)
T KOG1156|consen  216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE  288 (700)
T ss_pred             HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence              11122234667778888888888888777652       222111 11111111          001000 00     


Q ss_pred             --------------hHHHH-----------------------------HHHHHHHHHHHHhhCC-------------CCh
Q 010446          389 --------------GQEGR-----------------------------ELLEECLLITEKYKGK-------------EHP  412 (510)
Q Consensus       389 --------------~~~A~-----------------------------~~~~~al~~~~~~~~~-------------~~~  412 (510)
                                    +.+..                             .+.++.+..+....+.             ...
T Consensus       289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt  368 (700)
T KOG1156|consen  289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT  368 (700)
T ss_pred             cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence                          00000                             0111111111111111             122


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ...+++..++.-+...|+++.|..+...|++        ..|...+.+..-|+++...|+.++|..++.++.++-
T Consensus       369 tllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD  435 (700)
T KOG1156|consen  369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD  435 (700)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence            3456777889999999999999999999987        468889999999999999999999999999987653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.57  E-value=1.2e-12  Score=115.07  Aligned_cols=180  Identities=14%  Similarity=0.097  Sum_probs=147.4

Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      +.....++.+|..+...|++++|+..+++++...     ++++....++..+|.++...|++++|+..++++++..    
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~----  100 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH----  100 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence            4567789999999999999999999999998862     3345556788999999999999999999999999863    


Q ss_pred             CCCChHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH--------------HHHH
Q 010446          322 GENDGRVGMAMCSLAHAKCAN--------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENM--------------RIDL  379 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------------~~~l  379 (510)
                       ++++....++..+|.++...        |++++|++.+++++...       |++.....+              ...+
T Consensus       101 -p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~~~  172 (235)
T TIGR03302       101 -PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDYLRNRLAGKELYV  172 (235)
T ss_pred             -cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence             45566667888899999876        88999999999998773       333322111              2367


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                      |.++...|++.+|+..+++++...     ++.|....++..+|.++...|++++|..+++....
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            899999999999999999998764     34567788999999999999999999998876654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.57  E-value=6.7e-12  Score=118.58  Aligned_cols=264  Identities=14%  Similarity=0.079  Sum_probs=185.3

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEV-AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      .-.+......|+++.|..++.++.+.          .|+.. ......+.++...|++++|...++++.+..       |
T Consensus       122 llaA~aA~~~g~~~~A~~~l~~A~~~----------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-------P  184 (398)
T PRK10747        122 LLAAEAAQQRGDEARANQHLERAAEL----------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-------P  184 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc----------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------C
Confidence            33456669999999999999999865          33332 233344889999999999999999987664       3


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT-----SLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      ....++..++.+|...|++++|+..+.+..+..     ..++....     ++..+........+    .+.+.+..+..
T Consensus       185 ~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~l  255 (398)
T PRK10747        185 RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-----VGDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQ  255 (398)
T ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhC
Confidence            334557888999999999999999998877642     11122111     22222221112222    22233322221


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010446          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (510)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (510)
                      .    ...+........++..+...|+.++|...++++++.      +.++.....+.     ....++.+++++.+++.
T Consensus       256 p----~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l~~-----~l~~~~~~~al~~~e~~  320 (398)
T PRK10747        256 S----RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLLIP-----RLKTNNPEQLEKVLRQQ  320 (398)
T ss_pred             C----HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHHh-----hccCCChHHHHHHHHHH
Confidence            1    123445677888999999999999999999999872      23443332222     23459999999999888


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (510)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (510)
                      ++.       .|+++.   .+..+|.++...|++++|.++|+++++.        .|+. ..+..++.++...|+.++|.
T Consensus       321 lk~-------~P~~~~---l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~  381 (398)
T PRK10747        321 IKQ-------HGDTPL---LWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAA  381 (398)
T ss_pred             Hhh-------CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHH
Confidence            765       445543   4577999999999999999999999875        2333 34567999999999999999


Q ss_pred             HHHHHHHHHH
Q 010446          436 RLLRICLDIM  445 (510)
Q Consensus       436 ~~~~~al~~~  445 (510)
                      .+|++++.+.
T Consensus       382 ~~~~~~l~~~  391 (398)
T PRK10747        382 AMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHhhh
Confidence            9999998864

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=4.4e-10  Score=103.49  Aligned_cols=342  Identities=13%  Similarity=0.123  Sum_probs=215.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ..++.....+...|+|++|.....+.+..          .|+...++..--.+....+.|++|+...+.-...       
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~----------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~-------   75 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSI----------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL-------   75 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhc----------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-------
Confidence            34667778888999999999999998876          5777778888888889999999998655542211       


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL---  275 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---  275 (510)
                       .......+..+.|.++.+..++|+..++-+ +       ..+   ...+...|.+++++|+|++|...|+...+-.   
T Consensus        76 -~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~-------~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen   76 -LVINSFFFEKAYCEYRLNKLDEALKTLKGL-D-------RLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             -hhcchhhHHHHHHHHHcccHHHHHHHHhcc-c-------ccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence             111111267888999999999999988721 1       111   3355667999999999999999998774310   


Q ss_pred             --------------------HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh-------HH
Q 010446          276 --------------------ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-------RV  328 (510)
Q Consensus       276 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~  328 (510)
                                          .+............++|.|.++...|+|.+|++.+++++.++++.+..++.       ..
T Consensus       144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el  223 (652)
T KOG2376|consen  144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL  223 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence                                111111223356678999999999999999999999999998877544322       24


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHH-HHHHH-----------
Q 010446          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE-GRELL-----------  396 (510)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~-----------  396 (510)
                      ..+...++.++..+|+.++|...|...+...      ..|.+..+.+-+||..+-....-++. ++..+           
T Consensus       224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~------~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~  297 (652)
T KOG2376|consen  224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN------PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL  297 (652)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc------CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence            4567788999999999999999999887762      34444555444554433222111110 00000           


Q ss_pred             --------------------------HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446          397 --------------------------EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (510)
Q Consensus       397 --------------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (510)
                                                .++.++.... ....|..................+.+|.+++...-+       
T Consensus       298 l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l-p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-------  369 (652)
T KOG2376|consen  298 LSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL-PGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD-------  369 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC-CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-------
Confidence                                      0011111111 112222221111222222222245556555554433       


Q ss_pred             CCChhh-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-cCCCCcchhHHHHh
Q 010446          451 PDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLPGKLLTVW  504 (510)
Q Consensus       451 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~  504 (510)
                       .+|.. ..+...++.+...+|+++.|+..+...++..... ..-.|.+..+.++-
T Consensus       370 -~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv  424 (652)
T KOG2376|consen  370 -GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIV  424 (652)
T ss_pred             -cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHH
Confidence             34443 5567888899999999999999999766544433 33344444444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.48  E-value=1.5e-11  Score=110.37  Aligned_cols=228  Identities=14%  Similarity=0.163  Sum_probs=164.9

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ..+..+...|..|...|++++|...|.++.....+.  .+....+.++...+.+|... ++++|+.+++++++++.... 
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-  108 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-  108 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence            345667788899999999999999999999988774  33346677888888887666 99999999999999998754 


Q ss_pred             CCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                       .....+.++..+|.+|... |++++|+++|++|+++++...  .......++..+|.++...|+|++|++.|++.....
T Consensus       109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence             3455678899999999999 999999999999999998752  233466788899999999999999999999987753


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHHHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAERL  437 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~  437 (510)
                      .+.   +.........+...+.+++..|+...|...+++........   .+..-......|-..+..  ...+++|+.-
T Consensus       186 l~~---~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---~~s~E~~~~~~l~~A~~~~D~e~f~~av~~  259 (282)
T PF14938_consen  186 LEN---NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---ASSREYKFLEDLLEAYEEGDVEAFTEAVAE  259 (282)
T ss_dssp             CCH---CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---TTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred             hcc---cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            221   11122334455677889999999999998888765442211   123334455556665543  3346666666


Q ss_pred             HHHH
Q 010446          438 LRIC  441 (510)
Q Consensus       438 ~~~a  441 (510)
                      |...
T Consensus       260 ~d~~  263 (282)
T PF14938_consen  260 YDSI  263 (282)
T ss_dssp             HTTS
T ss_pred             Hccc
Confidence            6543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.9e-09  Score=99.38  Aligned_cols=333  Identities=13%  Similarity=0.086  Sum_probs=210.8

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh---------
Q 010446          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV---------  192 (510)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------  192 (510)
                      ++.+.+.++.+..++|+..++- +            ++....++...|.+++++|+|++|..+|+...+-.         
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~-~------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r  149 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKG-L------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR  149 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhc-c------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            6889999999999999998872 1            33335577888999999999999999998874311         


Q ss_pred             ---------------hhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHH
Q 010446          193 ---------------DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLG  250 (510)
Q Consensus       193 ---------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~  250 (510)
                                     ...+.........+++.+.++...|+|.+|++.+++++.++++.+..++.       .+..+...
T Consensus       150 ~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ  229 (652)
T KOG2376|consen  150 ANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ  229 (652)
T ss_pred             HHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence                           11111112244568999999999999999999999999988876544322       35567788


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH-HHHHHH------------------
Q 010446          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFS------------------  311 (510)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~------------------  311 (510)
                      ++.++..+|+..+|...|...+...    ..|.+..+.+-+||-.+-....-++. ++..++                  
T Consensus       230 layVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q  305 (652)
T KOG2376|consen  230 LAYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ  305 (652)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            9999999999999999999887752    23445555555555433222221110 000000                  


Q ss_pred             -------------------HHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 010446          312 -------------------RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM  372 (510)
Q Consensus       312 -------------------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  372 (510)
                                         ++.++... .....|..................+.+|.+++....+-       .+..  .
T Consensus       306 k~~i~~N~~lL~l~tnk~~q~r~~~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~-------~p~~--s  375 (652)
T KOG2376|consen  306 KQAIYRNNALLALFTNKMDQVRELSAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG-------HPEK--S  375 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc-------CCch--h
Confidence                               01111111 11122221111111111122222344444444443222       2222  2


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC--CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK--EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (510)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (510)
                      ..+...++.+...+|+++.|++.+...+.........  ..|.++   ..+-..|...++.+-|...+.+++..+.....
T Consensus       376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t  452 (652)
T KOG2376|consen  376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVLDSAIKWWRKQQT  452 (652)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence            3455678899999999999999998555333222211  233332   23445677888888899999999998877643


Q ss_pred             CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                      . .+.....+..++..-.+.|+-++|...+++.+.
T Consensus       453 ~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k  486 (652)
T KOG2376|consen  453 G-SIALLSLMREAAEFKLRHGNEEEASSLLEELVK  486 (652)
T ss_pred             c-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence            3 355556677788888888999999999999876

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.48  E-value=6.9e-12  Score=112.48  Aligned_cols=226  Identities=15%  Similarity=0.071  Sum_probs=160.7

Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ..+..+...|..|...|++++|.+.|.++.+...+..  +....+..+...+.+|... ++++|+.+++++++++.... 
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-  108 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-  108 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence            3455566678888999999999999999999987743  3445667788888887766 99999999999999998752 


Q ss_pred             CCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          323 ENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (510)
                       .....+.++..+|.+|... |++++|+++|++|.+++...    ..+.....++..+|.++...|+|++|++.|++...
T Consensus       109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence             3345788999999999999 99999999999999999873    35556677889999999999999999999999876


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh--cCChHHHHHH
Q 010446          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKL  479 (510)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~  479 (510)
                      ...... .........+...+.++...|++..|...+++.......   -.+.........|-.++..  ...+++|+.-
T Consensus       184 ~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~  259 (282)
T PF14938_consen  184 KCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FASSREYKFLEDLLEAYEEGDVEAFTEAVAE  259 (282)
T ss_dssp             TCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---STTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred             Hhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            432210 012233345667788999999999999988887653211   1123334455566555543  2334444444


Q ss_pred             HH
Q 010446          480 VL  481 (510)
Q Consensus       480 ~~  481 (510)
                      |.
T Consensus       260 ~d  261 (282)
T PF14938_consen  260 YD  261 (282)
T ss_dssp             HT
T ss_pred             Hc
Confidence            43

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.47  E-value=2e-10  Score=106.80  Aligned_cols=309  Identities=13%  Similarity=0.040  Sum_probs=235.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ..+++-+..+.+.+.++-|+..|..+++.          .|....+|...+..--.-|..++-..+++++....      
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqv----------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~------  580 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQV----------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC------  580 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhh----------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------
Confidence            34666777788888888888888888877          55566667777666677788888888888887765      


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                       |..-..+...+..++..|+...|...+.++++..        |..-..+..-..+.....+++.|..++.++...    
T Consensus       581 -pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--------pnseeiwlaavKle~en~e~eraR~llakar~~----  647 (913)
T KOG0495|consen  581 -PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--------PNSEEIWLAAVKLEFENDELERARDLLAKARSI----  647 (913)
T ss_pred             -CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----
Confidence             3333446777888888899999999999988752        333455666667778889999999999988764    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                           ..+..++..-+.+...+++.++|+++++++++.+        |.....|..+|.++...++.+.|.+.|...++.
T Consensus       648 -----sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~  714 (913)
T KOG0495|consen  648 -----SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK  714 (913)
T ss_pred             -----CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence                 2345677777888888999999999999999853        666788899999999999999999999888776


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (510)
                      +..      .    .-.|..++.+-.+.|+...|...++++.-        .+|.....|......-.+.|+.+.|....
T Consensus       715 cP~------~----ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~~a~~lm  776 (913)
T KOG0495|consen  715 CPN------S----IPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKEQAELLM  776 (913)
T ss_pred             CCC------C----chHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence            432      1    22457788999999999999999988754        35666677777778888899999999999


Q ss_pred             HHHHHHHHHHh--------CCCC--------------hhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          439 RICLDIMTKTV--------GPDD--------------QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       439 ~~al~~~~~~~--------~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      .+|++-+....        -..+              .....++..+|..+....++++|.++|.+++.+.
T Consensus       777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d  847 (913)
T KOG0495|consen  777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD  847 (913)
T ss_pred             HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            88887543210        0000              1122356778999999999999999999998754

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.46  E-value=5.5e-10  Score=103.93  Aligned_cols=275  Identities=14%  Similarity=0.059  Sum_probs=220.1

Q ss_pred             CCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446          155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (510)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (510)
                      +....+.-.++..-+..+...+.++-|..+|..+++.+       |..-.+|...+..-...|..++-..++++++... 
T Consensus       509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-  580 (913)
T KOG0495|consen  509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-  580 (913)
T ss_pred             ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-
Confidence            55566677788888888888888999999998888876       3334446666666667788888888999998764 


Q ss_pred             HhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (510)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (510)
                             |..-..+...+..+...|+...|...+.++.+.        +|..-..+..-..+.....+++.|..++.++.
T Consensus       581 -------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar  645 (913)
T KOG0495|consen  581 -------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKAR  645 (913)
T ss_pred             -------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence                   223345666778888899999999999999886        45556667666778888999999999999987


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 010446          315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (510)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (510)
                      ..         ..+..+++.-+.+...+++.++|+.+++++++.+          +.....|..+|+++..+++.+.|..
T Consensus       646 ~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----------p~f~Kl~lmlGQi~e~~~~ie~aR~  706 (913)
T KOG0495|consen  646 SI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----------PDFHKLWLMLGQIEEQMENIEMARE  706 (913)
T ss_pred             cc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----------CchHHHHHHHhHHHHHHHHHHHHHH
Confidence            63         2234667777888888999999999999999884          3335567889999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChH
Q 010446          395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK  474 (510)
Q Consensus       395 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  474 (510)
                      .|...+..        -|.....|..|+.+-...|+..+|...++++.-        .+|.....|......-.+.|+.+
T Consensus       707 aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~  770 (913)
T KOG0495|consen  707 AYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKE  770 (913)
T ss_pred             HHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHH
Confidence            99887664        356667888999999999999999999998865        46777777777888888999999


Q ss_pred             HHHHHHHHHHHHH
Q 010446          475 EAEKLVLEALYIR  487 (510)
Q Consensus       475 ~A~~~~~~al~~~  487 (510)
                      .|.....+|++-+
T Consensus       771 ~a~~lmakALQec  783 (913)
T KOG0495|consen  771 QAELLMAKALQEC  783 (913)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998744

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.44  E-value=1.4e-09  Score=103.87  Aligned_cols=292  Identities=14%  Similarity=0.098  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ++-.+..+...|++++|++++++....          -.+....+-..|.++..+|++++|...+...+...       |
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~----------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------P   69 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQ----------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------P   69 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhh----------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------C
Confidence            455667788999999999999875544          56677788899999999999999999999988764       3


Q ss_pred             HHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHhcCC--------CCh----------------hHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTL-----ENYEKSMLVYQRVINVLESRYGK--------TSI----------------LLVTSLLGM  251 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~--------~~~----------------~~~~~~~~l  251 (510)
                      +....+..+..+....     .+.+.-...|++....+.....+        ...                .+.....++
T Consensus        70 dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~l  149 (517)
T PF12569_consen   70 DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNL  149 (517)
T ss_pred             CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3333344444444222     13444455555443322110000        000                011122233


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHhcC--------CCCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          252 AKVLGSIGRAKKAVEIYHRVITILELNRG--------TESA-DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      -..|....+..-...+........+....        ...| ...++++.+|..|...|++++|+.+.+++++.      
T Consensus       150 k~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------  223 (517)
T PF12569_consen  150 KPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------  223 (517)
T ss_pred             HHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------
Confidence            33333222222112222222221111100        1122 23567889999999999999999999999984      


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                        .|..+..+...|.++-..|++.+|.+.++.+..+..       .+..   +....+..+.+.|+.++|...+..-..-
T Consensus       224 --tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-------~DRy---iNsK~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  224 --TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-------ADRY---INSKCAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-------hhHH---HHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence              577788999999999999999999999999987732       2222   3356788889999999998876543221


Q ss_pred             HHHhhCC-C---ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446          403 TEKYKGK-E---HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (510)
Q Consensus       403 ~~~~~~~-~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (510)
                      ..   ++ .   .....+.....|.+|.+.|++..|+..|..+..++.....
T Consensus       292 ~~---~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~  340 (517)
T PF12569_consen  292 DV---DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE  340 (517)
T ss_pred             CC---CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence            00   00 0   1122344456799999999999999999999999887643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.44  E-value=2.4e-10  Score=108.37  Aligned_cols=261  Identities=16%  Similarity=0.149  Sum_probs=190.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH
Q 010446          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS  214 (510)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (510)
                      .++++.++++++.          ++.++.+.+.++.-|..+++.+.|..+.++++++.   +.+   ...+|..++.++.
T Consensus       461 ~kslqale~av~~----------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~---~~~---~~~~whLLALvlS  524 (799)
T KOG4162|consen  461 KKSLQALEEAVQF----------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN---RGD---SAKAWHLLALVLS  524 (799)
T ss_pred             HHHHHHHHHHHhc----------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc---CCc---cHHHHHHHHHHHh
Confidence            3445555555544          66667899999999999999999999999998874   222   2445889999999


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH------------------
Q 010446          215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE------------------  276 (510)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------  276 (510)
                      .++++.+|+...+.+++.+...+..        ......+-...++.++|+..+...+..++                  
T Consensus       525 a~kr~~~Al~vvd~al~E~~~N~~l--------~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk  596 (799)
T KOG4162|consen  525 AQKRLKEALDVVDAALEEFGDNHVL--------MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLK  596 (799)
T ss_pred             hhhhhHHHHHHHHHHHHHhhhhhhh--------chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhh
Confidence            9999999999999998876442111        11111122223444444444444444433                  


Q ss_pred             -------------------------HhcC----------------CCCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          277 -------------------------LNRG----------------TESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (510)
Q Consensus       277 -------------------------~~~~----------------~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (510)
                                               ....                ++++.  ....+...+..+...++.++|..++.++
T Consensus       597 ~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea  676 (799)
T KOG4162|consen  597 AGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA  676 (799)
T ss_pred             cccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence                                     1100                01111  1123445677788888889998888888


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 010446          314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  393 (510)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (510)
                      -.+        .+.....|+..|..+..+|++.+|.+.|..++.+       .|++..   +...+|.++.+.|+..-|.
T Consensus       677 ~~~--------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-------dP~hv~---s~~Ala~~lle~G~~~la~  738 (799)
T KOG4162|consen  677 SKI--------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-------DPDHVP---SMTALAELLLELGSPRLAE  738 (799)
T ss_pred             Hhc--------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-------CCCCcH---HHHHHHHHHHHhCCcchHH
Confidence            775        3667788999999999999999999999999987       455544   3477999999999887777


Q ss_pred             H--HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446          394 E--LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       394 ~--~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (510)
                      .  ++..++++        +|....+|+.+|.++..+|+.++|.++|+.++++-
T Consensus       739 ~~~~L~dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  739 KRSLLSDALRL--------DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            7  88888875        56777899999999999999999999999999864

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.42  E-value=3.5e-10  Score=107.88  Aligned_cols=297  Identities=15%  Similarity=0.079  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (510)
                      ..+++.....++...|++++|+.+++......       .+...++...|.++..+|++++|...|...++.        
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------   67 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQI-------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--------   67 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence            34566777888899999999999997755433       444555788999999999999999999999876        


Q ss_pred             ChhHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHhcCC--------C----------------CcchHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVITILELNRGT--------E----------------SADLVLPLF  291 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~--------~----------------~~~~~~~~~  291 (510)
                      +|+....+..+..+.....     +.+.-..+|++....+.+...+        .                ...+.....
T Consensus        68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~  147 (517)
T PF12569_consen   68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFS  147 (517)
T ss_pred             CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            2444555555655552222     3445555555443332111000        0                001122233


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHH--cC------CCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446          292 SLGSLFIKEGKAVDAESVFSRILKIYTKV--YG------ENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~------~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (510)
                      ++-.+|....+..--...+.......+..  +.      ...|. ...+++.+|..|...|++++|+++++++++.    
T Consensus       148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h----  223 (517)
T PF12569_consen  148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH----  223 (517)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Confidence            33333432222222222222222211111  00      12232 4678899999999999999999999999987    


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010446          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (510)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (510)
                            .|.....+...|.++...|++.+|...++.|..+.        ...-.+....+..+.+.|+.++|...+..-.
T Consensus       224 ------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft  289 (517)
T PF12569_consen  224 ------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--------LADRYINSKCAKYLLRAGRIEEAEKTASLFT  289 (517)
T ss_pred             ------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence                  34446778899999999999999999999987653        2222344556778889999999988765432


Q ss_pred             HHHHHHh-CC-CCh---hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010446          443 DIMTKTV-GP-DDQ---SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (510)
Q Consensus       443 ~~~~~~~-~~-~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  494 (510)
                      .    .. ++ .+.   ...+.....|.+|.+.|++..|++.|....+++.....+.
T Consensus       290 r----~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ  342 (517)
T PF12569_consen  290 R----EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ  342 (517)
T ss_pred             C----CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence            2    11 01 111   1233345679999999999999999999999998875543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.41  E-value=1.9e-09  Score=104.55  Aligned_cols=413  Identities=12%  Similarity=0.036  Sum_probs=257.1

Q ss_pred             hcccccccccccccccchhhHHHhhhhcccccCCCcccchhhhhhhccCC----CCCchHHhhhhhhhhhhcccccchHH
Q 010446           39 ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGF----SAPNDFARSKTLHDHSSNLWDGMNDF  114 (510)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~  114 (510)
                      ..+.+.+...+.|+..|+++.+|+...|.+.++..|...+...+....-|    ..-+.|.|++.+|.......-.. ..
T Consensus       264 eVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~-~~  342 (894)
T COG2909         264 EVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR-EL  342 (894)
T ss_pred             HHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc-cc
Confidence            45678889999999999999999999999999999999888877663333    34466778888776654221111 11


Q ss_pred             HHHHHH-HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446          115 ERQLLE-LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (510)
Q Consensus       115 ~~~~~~-l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (510)
                      ..+... ..+.+..+...|..++|++..-.|-+           ....+..+...+.-....++..--....+..   ..
T Consensus       343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d-----------~~~aa~lle~~~~~L~~~~~lsll~~~~~~l---P~  408 (894)
T COG2909         343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAGD-----------PEMAADLLEQLEWQLFNGSELSLLLAWLKAL---PA  408 (894)
T ss_pred             CCchhHHHHHHHHHHHhCCChHHHHHHHHhCCC-----------HHHHHHHHHhhhhhhhcccchHHHHHHHHhC---CH
Confidence            223333 44455788899999999986554321           2223334444555555555544333333221   00


Q ss_pred             hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010446          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (510)
                      ..-..+|..   ....++......++++|.....++........ .......+...-..|.+....|++++|+++.+.++
T Consensus       409 ~~l~~~P~L---vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al  485 (894)
T COG2909         409 ELLASTPRL---VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL  485 (894)
T ss_pred             HHHhhCchH---HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            001122332   34456677778999999999888776553310 00111344445556788889999999999999998


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHH--H
Q 010446          273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV--E  350 (510)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--~  350 (510)
                      ......   .....+.++..+|.+..-.|++++|..+..++.++.+...  .......+....+.++..+|+...|.  .
T Consensus       486 ~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~~~  560 (894)
T COG2909         486 VQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQEK  560 (894)
T ss_pred             Hhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            875332   2334466788899999999999999999999999987751  22334556677788999999433332  2


Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010446          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (510)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (510)
                      .+...-.....   ..+.+.....++..+...+.+   ++.+..-....+++..... +........+..|+.++...|+
T Consensus       561 ~~~~~~~q~l~---q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gd  633 (894)
T COG2909         561 AFNLIREQHLE---QKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGD  633 (894)
T ss_pred             HHHHHHHHHhh---hcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCC
Confidence            23222222111   122233333344444444443   6666655555555543321 1122222334589999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhh-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          431 FVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                      .++|...+.+.........  .+++. +.++.........+|+.++|.....+.
T Consensus       634 l~~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         634 LDKALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            9999999999888765431  23332 233333344555789999998887773

>PLN02789 farnesyltranstransferase

Probab=99.40  E-value=5.4e-10  Score=100.69  Aligned_cols=217  Identities=13%  Similarity=0.030  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHhcCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                      .++..+-.++...+.+++|+..+.+++.+        +|....++...+.++..+| ++++++..+.+++..        
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------  101 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------  101 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------
Confidence            33444444556678899999999999986        3666788999999999998 689999999999986        


Q ss_pred             CcchHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          283 SADLVLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                      +|....+++..+.++...|+.  ++++.+++++++.        +|....++...+.++...|++++|++++.++++.. 
T Consensus       102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-  172 (320)
T PLN02789        102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-  172 (320)
T ss_pred             CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-
Confidence            566677899999999888874  6788888888874        56777899999999999999999999999999872 


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh----cc
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIV---GRG----QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SK  429 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g  429 (510)
                            +.+   ..+++..+.++...   |.+    ++++.+..+++.+        .|....++..++.++..    .+
T Consensus       173 ------~~N---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~  235 (320)
T PLN02789        173 ------VRN---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALV  235 (320)
T ss_pred             ------CCc---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccc
Confidence                  222   34667778777665   333    4677777777764        45666788888888887    35


Q ss_pred             CHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhc
Q 010446          430 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  470 (510)
Q Consensus       430 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  470 (510)
                      +..+|.+.+.+++.        ..+....++..|+.+|...
T Consensus       236 ~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        236 SDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            56778887777655        2455566778889998763

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.40  E-value=1.1e-08  Score=90.12  Aligned_cols=304  Identities=17%  Similarity=0.121  Sum_probs=203.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      ...+.|-.-+..|+|.+|.....++-+.          .+.....+..-+.+-...||++.+-.++.++-+..    + +
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~----------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~----~-~  150 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEH----------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA----G-D  150 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhc----------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC----C-C
Confidence            3445666667899999999988885543          34444456666777888999999999999887653    1 2


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      +... +....+.+...+|+++.|..-..++++..        |....++.....+|...|++.+...+..+..+.-  ..
T Consensus       151 ~~l~-v~ltrarlll~~~d~~aA~~~v~~ll~~~--------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l  219 (400)
T COG3071         151 DTLA-VELTRARLLLNRRDYPAARENVDQLLEMT--------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LL  219 (400)
T ss_pred             chHH-HHHHHHHHHHhCCCchhHHHHHHHHHHhC--------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CC
Confidence            3333 36778899999999999999999988752        4445667778899999999999888877654421  00


Q ss_pred             CCCCcchHHHHHHHHH--HHHHcCChHHHHH--HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGS--LFIKEGKAVDAES--VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~--~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (510)
                        ++++ ..-+-+.+.  ++.+.++-+.+..  .+-+.+....    ..+|.   ....++.-+...|+.++|.+..+.+
T Consensus       220 --~~~e-~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l----r~~p~---l~~~~a~~li~l~~~~~A~~~i~~~  289 (400)
T COG3071         220 --SDEE-AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL----RNDPE---LVVAYAERLIRLGDHDEAQEIIEDA  289 (400)
T ss_pred             --ChHH-HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh----hcChh---HHHHHHHHHHHcCChHHHHHHHHHH
Confidence              1222 222222221  1222333222222  1111111111    12343   3345677789999999999999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (510)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (510)
                      ++..       .++. ..   ..++  ...-++...=++..++.+.        .+|+....+..||.+|.+.+.|.+|.
T Consensus       290 Lk~~-------~D~~-L~---~~~~--~l~~~d~~~l~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~  348 (400)
T COG3071         290 LKRQ-------WDPR-LC---RLIP--RLRPGDPEPLIKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKAS  348 (400)
T ss_pred             HHhc-------cChh-HH---HHHh--hcCCCCchHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHH
Confidence            8872       2322 11   1111  1244566666666666554        24555578889999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      .+|+.+++.         ......+..+|.++.++|+.++|.+.+++++.+..+
T Consensus       349 ~~leaAl~~---------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~  393 (400)
T COG3071         349 EALEAALKL---------RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ  393 (400)
T ss_pred             HHHHHHHhc---------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence            999998873         122456789999999999999999999999966544

>PLN02789 farnesyltranstransferase

Probab=99.40  E-value=5e-10  Score=100.89  Aligned_cols=209  Identities=13%  Similarity=0.031  Sum_probs=162.2

Q ss_pred             HHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010446          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (510)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (510)
                      ++...+.+++|+..+.+++.+.       |....++...+.++...| ++++++..+++++..        +|....++.
T Consensus        46 ~l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~  110 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWH  110 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhH
Confidence            3445678899999999998775       666778899999999998 689999999999875        355566788


Q ss_pred             HHHHHHhhcCCH--HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 010446          250 GMAKVLGSIGRA--KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (510)
Q Consensus       250 ~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (510)
                      ..+.++...|+.  ++++.++.++++.        +|....++...+.++...|++++|+.++.++++.        ++.
T Consensus       111 ~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~  174 (320)
T PLN02789        111 HRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVR  174 (320)
T ss_pred             HHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCC
Confidence            889888888874  6788999999886        6677899999999999999999999999999985        455


Q ss_pred             HHHHHHHHHHHHHHC---CCH----HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHH
Q 010446          328 VGMAMCSLAHAKCAN---GNA----EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELL  396 (510)
Q Consensus       328 ~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~  396 (510)
                      ...+++..+.+....   |.+    ++++.+..+++..       .|++   ..+|..++.++..    .++..+|.+.+
T Consensus       175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-------~P~N---~SaW~Yl~~ll~~~~~~l~~~~~~~~~~  244 (320)
T PLN02789        175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-------NPRN---ESPWRYLRGLFKDDKEALVSDPEVSSVC  244 (320)
T ss_pred             chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-------CCCC---cCHHHHHHHHHhcCCcccccchhHHHHH
Confidence            567888888887765   333    4677888888877       3333   3456778888877    34567788887


Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010446          397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRS  428 (510)
Q Consensus       397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  428 (510)
                      .+++.        ..+....++..|+.+|...
T Consensus       245 ~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        245 LEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            77655        2345566788889998763

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.36  E-value=5.4e-10  Score=108.72  Aligned_cols=338  Identities=14%  Similarity=0.085  Sum_probs=212.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ...++-.+.+.++...|+..++.++..          +|....++..+|.+|...|.+..|++.|.++..+.       |
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~----------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------P  627 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRT----------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------P  627 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcC----------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------c
Confidence            334677788899999999999999988          99999999999999999999999999999987764       5


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ......+..+.+....|+|.+|+..+...+....... ......+.++..++..+...|=+.+|..+++++++.+.-...
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            5445568889999999999999999998877654321 112356777888888888888888888888887765421110


Q ss_pred             ----------------------------------------------CCC----------------cchHHHHHHHHHHHH
Q 010446          281 ----------------------------------------------TES----------------ADLVLPLFSLGSLFI  298 (510)
Q Consensus       281 ----------------------------------------------~~~----------------~~~~~~~~~la~~~~  298 (510)
                                                                    ++.                ......++++|..|.
T Consensus       707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl  786 (1238)
T KOG1127|consen  707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL  786 (1238)
T ss_pred             HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence                                                          000                011234566666655


Q ss_pred             H--------cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh
Q 010446          299 K--------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  370 (510)
Q Consensus       299 ~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (510)
                      +        +.+...|+.++.+++.+.-..        -..++.||.+ ...|++.-|...|-+++...          +
T Consensus       787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann--------~~~WnaLGVl-sg~gnva~aQHCfIks~~se----------p  847 (1238)
T KOG1127|consen  787 RYFLLLGETMKDACTAIRCCKKAVSLCANN--------EGLWNALGVL-SGIGNVACAQHCFIKSRFSE----------P  847 (1238)
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHhhcc--------HHHHHHHHHh-hccchhhhhhhhhhhhhhcc----------c
Confidence            4        122346777777777654221        1233334433 33344444444444433321          1


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------------------------HHHHhhCCCChhHHH
Q 010446          371 IMENMRIDLAELLHIVGRGQEGRELLEECLL----------------------------------ITEKYKGKEHPSFVT  416 (510)
Q Consensus       371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~~~~~~~~~~~  416 (510)
                      .....|.|+|.++....+++.|.+.+.++..                                  ......  ..+. ..
T Consensus       848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g--ka~~-f~  924 (1238)
T KOG1127|consen  848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG--KAKK-FQ  924 (1238)
T ss_pred             cchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc--ccch-hh
Confidence            1122334444444444444444444443332                                  211110  0111 11


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHH--HHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010446          417 HLLNLAASYSRSKNFVEAERLLRICLD--IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (510)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  494 (510)
                      .+..-.......|++++-+...+++-.  +.-+.+-..+|+...++...|....+++.+++|.+.+.+.+.+.+..+..+
T Consensus       925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~s 1004 (1238)
T KOG1127|consen  925 YWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDES 1004 (1238)
T ss_pred             HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            222233344455566555554443221  111222245788888999999999999999999999999999988877766


Q ss_pred             Ccch
Q 010446          495 SLPG  498 (510)
Q Consensus       495 ~~~~  498 (510)
                      ..++
T Consensus      1005 qynv 1008 (1238)
T KOG1127|consen 1005 QYNV 1008 (1238)
T ss_pred             hhhh
Confidence            6554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=7.2e-09  Score=89.68  Aligned_cols=317  Identities=15%  Similarity=0.108  Sum_probs=171.0

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHH----------h
Q 010446          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSG----------I  191 (510)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~  191 (510)
                      .-.+.+++..|+|++|+..|+-+.+.          +...+....+++.+++..|.|.+|.....++-+          +
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~----------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhl  130 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNK----------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHL  130 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhcc----------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence            34678899999999999999876542          444567788999999999999999887655322          1


Q ss_pred             hhhcCCCchHHH----------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCH
Q 010446          192 VDSLKDDEPLLD----------AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA  261 (510)
Q Consensus       192 ~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  261 (510)
                      .-++++. ..+.          .-...++.+.+..-.|++|++.|.+.+.        +++.......++|.+|+++.-|
T Consensus       131 ahklndE-k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYy  201 (557)
T KOG3785|consen  131 AHKLNDE-KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYY  201 (557)
T ss_pred             HHHhCcH-HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchh
Confidence            1122221 1111          1124456666666777888887777764        4566666777889999999988


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc--CChHHHHH--H-------HHHHHHHHHHH----------
Q 010446          262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--GKAVDAES--V-------FSRILKIYTKV----------  320 (510)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~--~-------~~~al~~~~~~----------  320 (510)
                      +-+.+.+.--+.-        .|+...+.+..+...++.  |+..+++.  .       |..+-.+++..          
T Consensus       202 dvsqevl~vYL~q--------~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgA  273 (557)
T KOG3785|consen  202 DVSQEVLKVYLRQ--------FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGA  273 (557)
T ss_pred             hhHHHHHHHHHHh--------CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccH
Confidence            8887776655442        333334444444333322  22211110  0       00000000000          


Q ss_pred             ---cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------------------HHHHHHhhccCC
Q 010446          321 ---YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK-------------------------------ALRVIKDSNYMS  366 (510)
Q Consensus       321 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------------------------------al~~~~~~~~~~  366 (510)
                         .++--.....+..++...|.++++..+|..+.+.                               |-+.+.-.+..+
T Consensus       274 LqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa  353 (557)
T KOG3785|consen  274 LQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA  353 (557)
T ss_pred             HHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence               0000011234455555556666666666554433                               222222110000


Q ss_pred             CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 010446          367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  446 (510)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  446 (510)
                      ..- ...-....+|.++.-..++++-+.+++..-..+    ..+    -....++|..+...|++.+|.+.|-+.-.   
T Consensus       354 ~ec-DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF----~Nd----D~Fn~N~AQAk~atgny~eaEelf~~is~---  421 (557)
T KOG3785|consen  354 LEC-DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF----TND----DDFNLNLAQAKLATGNYVEAEELFIRISG---  421 (557)
T ss_pred             ccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCc----chhhhHHHHHHHHhcChHHHHHHHhhhcC---
Confidence            000 001112334555555556666665554433222    111    12345778888888888888887754422   


Q ss_pred             HHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446          447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (510)
Q Consensus       447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (510)
                          ++-.+...-...||++|...|+++-|.+.+-
T Consensus       422 ----~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l  452 (557)
T KOG3785|consen  422 ----PEIKNKILYKSMLARCYIRNKKPQLAWDMML  452 (557)
T ss_pred             ----hhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence                2222222334567778887777777766654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.35  E-value=3.1e-08  Score=92.64  Aligned_cols=311  Identities=15%  Similarity=0.093  Sum_probs=202.8

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHH
Q 010446          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (510)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (510)
                      ..|..+....+|++|+.+|+.|+.+          .+++..++..++....++|+++.....-.+.++..       |..
T Consensus        80 v~gl~~R~dK~Y~eaiKcy~nAl~~----------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~  142 (700)
T KOG1156|consen   80 VLGLLQRSDKKYDEAIKCYRNALKI----------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQ  142 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhh
Confidence            3556667788999999999999988          88888999999999999999998877777766554       555


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                      ...|...+..+...|++..|....+...+...............+......+....|.+++|.+.+..--.-        
T Consensus       143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--------  214 (700)
T KOG1156|consen  143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--------  214 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------
Confidence            555888899999999999999988877766542222222234455556667777777777777665543221        


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH----------------------
Q 010446          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC----------------------  340 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----------------------  340 (510)
                      ..+........|.++...+++++|...+...+...        |+....+..+-.++.                      
T Consensus       215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r  286 (700)
T KOG1156|consen  215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR  286 (700)
T ss_pred             HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence            11223344456777777777777777777655431        111111111100000                      


Q ss_pred             -----------------------------HC-------------CCHHHHHHHHHHHHHHHHhhc----cCC-------C
Q 010446          341 -----------------------------AN-------------GNAEEAVELYKKALRVIKDSN----YMS-------L  367 (510)
Q Consensus       341 -----------------------------~~-------------g~~~~A~~~~~~al~~~~~~~----~~~-------~  367 (510)
                                                   ..             .+..+ ..++++.+..+....    ...       .
T Consensus       287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E  365 (700)
T KOG1156|consen  287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQE  365 (700)
T ss_pred             cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCcccccccC
Confidence                                         00             01111 112222222222110    000       1


Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (510)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (510)
                      .+.....++..++.-+-..|+++.|..+.+.|+.        ..|.....+..-|.++...|+.++|...+.++.++   
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el---  434 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL---  434 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---
Confidence            3344567778899999999999999999999886        46788888999999999999999999999998874   


Q ss_pred             HhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                          +.++... -..-|.-..+.++.++|.+...+.
T Consensus       435 ----D~aDR~I-NsKcAKYmLrAn~i~eA~~~~skF  465 (700)
T KOG1156|consen  435 ----DTADRAI-NSKCAKYMLRANEIEEAEEVLSKF  465 (700)
T ss_pred             ----cchhHHH-HHHHHHHHHHccccHHHHHHHHHh
Confidence                3333321 124566666777888887665543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.34  E-value=7.6e-12  Score=88.34  Aligned_cols=78  Identities=29%  Similarity=0.338  Sum_probs=71.3

Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      ||.++.++.++|.+|..+|++++|+.+|++++++ .+..+++++.++.++.++|.++..+|++++|+++++++++++++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            5788899999999999999999999999999999 66667788889999999999999999999999999999999864

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.34  E-value=2.3e-10  Score=113.39  Aligned_cols=167  Identities=11%  Similarity=0.026  Sum_probs=144.4

Q ss_pred             HHHHH-HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          121 LFNEV-KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       121 l~~~~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      +..++ ...-..|....+...+-+++...+.       .+..+.++..||.+....|.+++|..+++.++++.       
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-------  116 (694)
T PRK15179         51 LLQQARQVLERHAAVHKPAAALPELLDYVRR-------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-------  116 (694)
T ss_pred             HHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-------
Confidence            34444 3345666777777777777777665       67779999999999999999999999999999886       


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      |+...+..+++.++.+.+++++|+..+++++..        .|..+..++.+|.++...|++++|+.+|++++..     
T Consensus       117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-----  183 (694)
T PRK15179        117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ-----  183 (694)
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence            677777899999999999999999999999875        4667889999999999999999999999999873     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                         +|+...++.++|.++...|+.++|...|+++++..
T Consensus       184 ---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        184 ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence               56778899999999999999999999999999874

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.31  E-value=9.1e-09  Score=100.47  Aligned_cols=235  Identities=13%  Similarity=0.088  Sum_probs=186.4

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 010446          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (510)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (510)
                      .+.+...|+..+-+++.+          ++..+.++..+|.+|...-|...|...|+++.++.       +..+.+.-..
T Consensus       470 ~rK~~~~al~ali~alrl----------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~  532 (1238)
T KOG1127|consen  470 MRKNSALALHALIRALRL----------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAAS  532 (1238)
T ss_pred             hhhhHHHHHHHHHHHHhc----------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHH
Confidence            344577888888888887          88889999999999999889999999999998764       4445556778


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 010446          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  289 (510)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (510)
                      +..|....+++.|......+-+....      ......+..+|..|...+++.+|+..++.+++.        .|....+
T Consensus       533 adtyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~  598 (1238)
T KOG1127|consen  533 ADTYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNL  598 (1238)
T ss_pred             HHHhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHH
Confidence            89999999999999885444332211      122334555899999999999999999999986        6777899


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (510)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (510)
                      +..+|.+|...|++..|++.|.++..+        .|......+..+.+....|+|.+|+..+...+......   .+-.
T Consensus       599 W~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e---~~~q  667 (1238)
T KOG1127|consen  599 WLGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE---RTGQ  667 (1238)
T ss_pred             HHHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhh
Confidence            999999999999999999999999875        46666677788999999999999999999988776542   1223


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010446          370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (510)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (510)
                      ...+.++..++..+...|=..+|..+++++++.+.-.
T Consensus       668 ~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~  704 (1238)
T KOG1127|consen  668 NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS  704 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            3345666777777777888888889998888776543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.28  E-value=1.1e-09  Score=108.69  Aligned_cols=191  Identities=13%  Similarity=0.085  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHhhCChHHHH-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446          161 EVAILDIIALGYVYIGDLKFVQ-SLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (510)
                      .+..+..+-.+....|..++|- +.++++.++.+                     ..|....+...+-+++.+.+.    
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~----   81 (694)
T PRK15179         27 GPTILDLLEAALAEPGESEEAGRELLQQARQVLE---------------------RHAAVHKPAAALPELLDYVRR----   81 (694)
T ss_pred             CcHHHhHHHHHhcCcccchhHHHHHHHHHHHHHH---------------------HhhhhcchHhhHHHHHHHHHh----
Confidence            3445555555666677766663 33444443332                     222333333333344444332    


Q ss_pred             CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (510)
                       .+....++.++|.+....|.+++|+.+++.++++        .|+...+..+++.++.+.+++++|+..+++++..   
T Consensus        82 -~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---  149 (694)
T PRK15179         82 -YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---  149 (694)
T ss_pred             -ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---
Confidence             3555788999999999999999999999999987        6777889999999999999999999999999874   


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (510)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (510)
                           .|+....++.+|.++...|++++|+.+|++++.-       +++.   ..++.++|.++...|+.++|...|+++
T Consensus       150 -----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-------~p~~---~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        150 -----GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ-------HPEF---ENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             -----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-------CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 5677788889999999999999999999998873       2333   456788999999999999999999999


Q ss_pred             HHHH
Q 010446          400 LLIT  403 (510)
Q Consensus       400 l~~~  403 (510)
                      ++..
T Consensus       215 ~~~~  218 (694)
T PRK15179        215 LDAI  218 (694)
T ss_pred             HHhh
Confidence            8865

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=4.4e-09  Score=90.93  Aligned_cols=311  Identities=17%  Similarity=0.143  Sum_probs=189.5

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (510)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (510)
                      ..+....+|..|+.+++-.+..         +..+...+-..+|.|++..|+|++|...|.-+...     ++.|  +..
T Consensus        30 edfls~rDytGAislLefk~~~---------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-----~~~~--~el   93 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNL---------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-----DDAP--AEL   93 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhcc---------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-----CCCC--ccc
Confidence            3456778999999988876643         23333456677899999999999999999876642     1222  334


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHH----------HHHhcCCC---------ChhHHHHHHHHHHHHhhcCCHHHHHH
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINV----------LESRYGKT---------SILLVTSLLGMAKVLGSIGRAKKAVE  266 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~  266 (510)
                      ..+++.+++..|.|.+|.....++-+.          ..+. +..         -.+...-...+|.+.+..-.|.+|++
T Consensus        94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAId  172 (557)
T KOG3785|consen   94 GVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAID  172 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            688999999999999999887765321          1111 110         01122334456777777778888888


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH--CCC
Q 010446          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA--NGN  344 (510)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~  344 (510)
                      .|.+.+.        +++.....-..+|.||.++.-++-+.+.+.--+.    .    .|+...+.+..+...++  .|+
T Consensus       173 vYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~----q----~pdStiA~NLkacn~fRl~ngr  236 (557)
T KOG3785|consen  173 VYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR----Q----FPDSTIAKNLKACNLFRLINGR  236 (557)
T ss_pred             HHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH----h----CCCcHHHHHHHHHHHhhhhccc
Confidence            8888775        4666677777899999999999888766654443    2    23222333333322222  122


Q ss_pred             ----------------HHHHHHHHHH----------HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          345 ----------------AEEAVELYKK----------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (510)
Q Consensus       345 ----------------~~~A~~~~~~----------al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (510)
                                      ++.+..+.+.          |++....      --..+..+..+|+..|.++++..+|..+.+.
T Consensus       237 ~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~------L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd  310 (557)
T KOG3785|consen  237 TAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS------LMKHIPEARLNLIIYYLNQNDVQEAISLCKD  310 (557)
T ss_pred             hhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH------HHhhChHhhhhheeeecccccHHHHHHHHhh
Confidence                            2222222221          3333221      1222344557777778888888887766542


Q ss_pred             H------------HH---HHHHhhCCC-----------------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 010446          399 C------------LL---ITEKYKGKE-----------------HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  446 (510)
Q Consensus       399 a------------l~---~~~~~~~~~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  446 (510)
                      .            +-   ..++....+                 ..++......+|.+++-..++++.+.++...-..+.
T Consensus       311 l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~  390 (557)
T KOG3785|consen  311 LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT  390 (557)
T ss_pred             cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1            10   001110011                 112223344567777777888888888776554432


Q ss_pred             HHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                          .++    ....++|.++...|++.+|.+.|-+.
T Consensus       391 ----NdD----~Fn~N~AQAk~atgny~eaEelf~~i  419 (557)
T KOG3785|consen  391 ----NDD----DFNLNLAQAKLATGNYVEAEELFIRI  419 (557)
T ss_pred             ----Ccc----hhhhHHHHHHHHhcChHHHHHHHhhh
Confidence                121    34588999999999999999988654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.27  E-value=1.8e-10  Score=91.64  Aligned_cols=126  Identities=13%  Similarity=0.050  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh
Q 010446          138 IDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE  217 (510)
Q Consensus       138 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  217 (510)
                      ..++++++++          .|..   +..+|.++...|++++|...|++++...       |....++..+|.++...|
T Consensus        13 ~~~~~~al~~----------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g   72 (144)
T PRK15359         13 EDILKQLLSV----------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLK   72 (144)
T ss_pred             HHHHHHHHHc----------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHh
Confidence            4567777776          5554   5578999999999999999999988664       555677899999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (510)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (510)
                      ++++|+..|++++.+        .|....+++++|.++...|++++|+..|++++++        .|.....+.+.+.+.
T Consensus        73 ~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~  136 (144)
T PRK15359         73 EYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQ  136 (144)
T ss_pred             hHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH
Confidence            999999999999985        3556788999999999999999999999999997        455566666666655


Q ss_pred             HH
Q 010446          298 IK  299 (510)
Q Consensus       298 ~~  299 (510)
                      ..
T Consensus       137 ~~  138 (144)
T PRK15359        137 IM  138 (144)
T ss_pred             HH
Confidence            43

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.26  E-value=6e-11  Score=83.73  Aligned_cols=78  Identities=18%  Similarity=0.397  Sum_probs=70.0

Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      +|..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.++...|++++|++++++++++.++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            4778889999999999999999999999999999 66667777888999999999999999999999999999998653

...

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.4e-07  Score=85.08  Aligned_cols=269  Identities=13%  Similarity=0.064  Sum_probs=162.1

Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE--  276 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--  276 (510)
                      +|.+.. +...+..-...|+..-|...|++|++....     +..........|..-..+..++.|...|+-|++...  
T Consensus       204 HP~v~~-wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~  277 (677)
T KOG1915|consen  204 HPKVSN-WIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG  277 (677)
T ss_pred             cccHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            344433 667777778889999999999999887532     223333444455555566677777777766655321  


Q ss_pred             -------------HhcC---------------------CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          277 -------------LNRG---------------------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       277 -------------~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                                   +..|                     ..+|..-.++...-.+-...|+.+.-.+.|++|+.-..... 
T Consensus       278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~-  356 (677)
T KOG1915|consen  278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS-  356 (677)
T ss_pred             cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh-
Confidence                         1111                     23455556677777777778999999999999987321100 


Q ss_pred             CCC--hHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          323 END--GRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (510)
Q Consensus       323 ~~~--~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (510)
                      ...  ...+..+.+.+. .-....+.+.+.+.|+.++++.      +......+.++...|....++.+...|...+-.|
T Consensus       357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI------PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A  430 (677)
T KOG1915|consen  357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI------PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA  430 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc------CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            000  012222333222 1234788999999999999974      3445667777777888888888887777776655


Q ss_pred             HHHH--------------------------HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCC
Q 010446          400 LLIT--------------------------EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  453 (510)
Q Consensus       400 l~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  453 (510)
                      +..+                          ++.. ...|....++...|.+-..+|+.+.|...|+-|++--    ..+-
T Consensus       431 IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl-e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp----~ldm  505 (677)
T KOG1915|consen  431 IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL-EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP----ALDM  505 (677)
T ss_pred             hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH-hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc----cccc
Confidence            5432                          1111 2345666666777777777777777777777666510    0111


Q ss_pred             hhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          454 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       454 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      |...  +......-...|.++.|..+|++.++..
T Consensus       506 pell--wkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  506 PELL--WKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHHH--HHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            2211  2233334445677777777777766643

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=9.8e-08  Score=86.19  Aligned_cols=349  Identities=14%  Similarity=0.087  Sum_probs=231.2

Q ss_pred             HHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HhhCChHHHHHHHHHHHHhhhh
Q 010446          118 LLELFNEVKSMIMMG--NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY-VYIGDLKFVQSLLDMMSGIVDS  194 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~  194 (510)
                      ...++..+..+...|  +..+++.+++.....       .....-.+.+...+|.++ ....+++.|...++++..+.+.
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~-------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~   79 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQF-------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS   79 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHhcc-------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence            345777888888888  788888887776644       222334566677788765 4588999999999999888766


Q ss_pred             cCCCchHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHH---------------------------------------
Q 010446          195 LKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLE---------------------------------------  234 (510)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~---------------------------------------  234 (510)
                      ++.-......+...++.+|.... .+..+...+++++++.+                                       
T Consensus        80 ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~  159 (629)
T KOG2300|consen   80 IPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADH  159 (629)
T ss_pred             cccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccch
Confidence            55443333444556666666555 55666666666655400                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 010446          235 --------------------------------------------------------------------------------  234 (510)
Q Consensus       235 --------------------------------------------------------------------------------  234 (510)
                                                                                                      
T Consensus       160 ~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ  239 (629)
T KOG2300|consen  160 ICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQ  239 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------HhcCCCChhHH--------HHHHHHHH--HHhhcCCHHHHHHHHHHHHHHHHHhcCCCC--c---
Q 010446          235 ---------------SRYGKTSILLV--------TSLLGMAK--VLGSIGRAKKAVEIYHRVITILELNRGTES--A---  284 (510)
Q Consensus       235 ---------------~~~~~~~~~~~--------~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~---  284 (510)
                                     ++++.+.+...        .++..+-.  --...|-+++|.++-++++...++....+.  +   
T Consensus       240 ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srils  319 (629)
T KOG2300|consen  240 DSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILS  319 (629)
T ss_pred             HHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence                           00011111110        01111111  112346678888888888877666543221  1   


Q ss_pred             -chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          285 -DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN--DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       285 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                       .....+..+..+-.-.|++.+|++-...+.+.+.+..++.  ....+.....+|.....-+.++.|+..|..|.+....
T Consensus       320 m~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~  399 (629)
T KOG2300|consen  320 MFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES  399 (629)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH
Confidence             1123345567777889999999999999999887653211  1224556777888888899999999999999988543


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-------ChhHHHHHHHHHHHHHhccCHHHH
Q 010446          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-------HPSFVTHLLNLAASYSRSKNFVEA  434 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A  434 (510)
                             ....+.+..++|.+|.+.|+-+.-.+.++.    .    ++.       ....+.+++..|...+.++++.||
T Consensus       400 -------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~----i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEa  464 (629)
T KOG2300|consen  400 -------IDLQAFCNLNLAISYLRIGDAEDLYKALDL----I----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEA  464 (629)
T ss_pred             -------HHHHHHHHHhHHHHHHHhccHHHHHHHHHh----c----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHH
Confidence                   344566778999999998876543333322    1    222       112345666778888899999999


Q ss_pred             HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446          435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (510)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  490 (510)
                      ...+.+.+++....  ....-++..+..|+.+....|+..++.+...-++.+.+++
T Consensus       465 K~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi  518 (629)
T KOG2300|consen  465 KRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI  518 (629)
T ss_pred             HHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence            99999999976321  2234455667789999999999999999999999998876

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.23  E-value=5.4e-09  Score=87.89  Aligned_cols=150  Identities=14%  Similarity=0.189  Sum_probs=119.0

Q ss_pred             HHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 010446          168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS  247 (510)
Q Consensus       168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  247 (510)
                      -+..|+..|+++......+...      .   +..         -+...++.++++..+++++..        +|.....
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~------~---~~~---------~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~   75 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA------D---PLH---------QFASQQTPEAQLQALQDKIRA--------NPQNSEQ   75 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh------C---ccc---------cccCchhHHHHHHHHHHHHHH--------CCCCHHH
Confidence            3456788999888654432211      0   100         112367778888888888875        3566789


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHHHHHHcCCC
Q 010446          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGK--AVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      +..+|.+|...|++++|+..|++++++        .|.....+..+|.++ ...|+  +++|...++++++.        
T Consensus        76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--------  139 (198)
T PRK10370         76 WALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--------  139 (198)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------
Confidence            999999999999999999999999998        566788999999975 67787  59999999999985        


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                      +|....++.++|..+...|++++|+.+++++++..
T Consensus       140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            46667889999999999999999999999999883

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.22  E-value=3.8e-10  Score=89.76  Aligned_cols=125  Identities=12%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             HHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCH
Q 010446          182 QSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA  261 (510)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  261 (510)
                      ..++++++++.       |..   +..+|..+...|++++|..+|++++..        +|....++..+|.++...|++
T Consensus        13 ~~~~~~al~~~-------p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLSVD-------PET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHHcC-------HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence            34566666553       433   557899999999999999999999875        356678899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 010446          262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (510)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (510)
                      ++|+..|++++.+        .|....++.++|.++...|++++|+..|++++.+.        |.....+.+.+.+..
T Consensus        75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~  137 (144)
T PRK15359         75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQI  137 (144)
T ss_pred             HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH
Confidence            9999999999987        56778999999999999999999999999999862        333445555555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.21  E-value=4.2e-08  Score=94.02  Aligned_cols=288  Identities=16%  Similarity=0.141  Sum_probs=150.2

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh---cCCCCh-
Q 010446          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR---YGKTSI-  242 (510)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~-  242 (510)
                      .+-..|...|.+++|.++.+.         .+...+...|++.+..+...++.+.|+++|+++-....+.   +..+.+ 
T Consensus       831 LlNKlyQs~g~w~eA~eiAE~---------~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~  901 (1416)
T KOG3617|consen  831 LLNKLYQSQGMWSEAFEIAET---------KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ  901 (1416)
T ss_pred             HHHHHHHhcccHHHHHHHHhh---------ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence            344456667777777655543         2334455568899999999999999999999863221111   011111 


Q ss_pred             --------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc-----CC--------CCcchHHHHHHHHHHHHHcC
Q 010446          243 --------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR-----GT--------ESADLVLPLFSLGSLFIKEG  301 (510)
Q Consensus       243 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~--------~~~~~~~~~~~la~~~~~~g  301 (510)
                              .....|...|......|+.+.|+.+|..|-+.+....     |.        +......+.+.||+.|...|
T Consensus       902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g  981 (1416)
T KOG3617|consen  902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG  981 (1416)
T ss_pred             HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH
Confidence                    1123566778889999999999999988865432110     00        00011223344555555555


Q ss_pred             ChHHHHHHHHHHHHHHHHH--cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 010446          302 KAVDAESVFSRILKIYTKV--YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL  379 (510)
Q Consensus       302 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l  379 (510)
                      ++.+|+.+|.+|-.....+  ..+++  .-.-+.+++.. ....+.-.|..||++.--..                 ..-
T Consensus       982 ~v~~Av~FfTrAqafsnAIRlcKEnd--~~d~L~nlal~-s~~~d~v~aArYyEe~g~~~-----------------~~A 1041 (1416)
T KOG3617|consen  982 DVVKAVKFFTRAQAFSNAIRLCKEND--MKDRLANLALM-SGGSDLVSAARYYEELGGYA-----------------HKA 1041 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHhh-cCchhHHHHHHHHHHcchhh-----------------hHH
Confidence            5555555544432211000  00000  00011111110 01112222233333211000                 112


Q ss_pred             HHHHHHcCChHHHHHHHH-----HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH------HHHHHHHH
Q 010446          380 AELLHIVGRGQEGRELLE-----ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI------CLDIMTKT  448 (510)
Q Consensus       380 a~~~~~~g~~~~A~~~~~-----~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~  448 (510)
                      ..+|.+.|.+.+|+++.-     .++++..+.+.+  ......+..-+..+....+|++|..++-.      |+.++...
T Consensus      1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~--~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA--GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred             HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC--CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            234555555555555432     133333333222  22335566778888889999999877644      44444321


Q ss_pred             -----------hCC------CChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          449 -----------VGP------DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       449 -----------~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                                 ..+      +......++..+|.++.++|.|..|.+-|.+|=.
T Consensus      1120 nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1120 NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred             CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence                       011      1123456788999999999999999999988743

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.21  E-value=1.1e-08  Score=102.31  Aligned_cols=253  Identities=15%  Similarity=0.067  Sum_probs=178.8

Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .+.-.|....++..+...+...+++++|...++.+++.        +|.....++.+|.++...+++.++...  .++.+
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~   92 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS   92 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence            35566777888999999999999999999999988764        466677888999999999999888766  55554


Q ss_pred             HHHhcC-----------CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC
Q 010446          275 LELNRG-----------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (510)
Q Consensus       275 ~~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (510)
                      ......           .+.+..-.++..+|.||..+|+.++|...|+++++.        +|..+.+++++|..|... 
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-  163 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-  163 (906)
T ss_pred             cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-
Confidence            322110           012333468889999999999999999999999985        477788999999999999 


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010446          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (510)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (510)
                      +.++|+.++.+|+..+-..    .........|..+.  ...-.+.+.=..+.++...    ..  .....+..+.-+=.
T Consensus       164 dL~KA~~m~~KAV~~~i~~----kq~~~~~e~W~k~~--~~~~~d~d~f~~i~~ki~~----~~--~~~~~~~~~~~l~~  231 (906)
T PRK14720        164 DKEKAITYLKKAIYRFIKK----KQYVGIEEIWSKLV--HYNSDDFDFFLRIERKVLG----HR--EFTRLVGLLEDLYE  231 (906)
T ss_pred             hHHHHHHHHHHHHHHHHhh----hcchHHHHHHHHHH--hcCcccchHHHHHHHHHHh----hh--ccchhHHHHHHHHH
Confidence            9999999999999875532    12222222222221  1122223322222222221    11  12234455666778


Q ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      .|...++|++++..++.++++        .+....+...++.+|.  +.|.. ...+++.+++..-
T Consensus       232 ~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l  286 (906)
T PRK14720        232 PYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDI  286 (906)
T ss_pred             HHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhcc
Confidence            899999999999999999985        3444566788999887  56655 7778888777644

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=1.3e-09  Score=103.05  Aligned_cols=232  Identities=16%  Similarity=0.132  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                      .....++..+...|-..+|+..|++.-                .+.....+|...|+..+|.....+-++         .
T Consensus       399 q~q~~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le---------k  453 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE---------K  453 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc---------C
Confidence            335678888999998888888887642                345667889999999999888777654         1


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (510)
                      +.....|..+|.+..+.       .+|++|.++....       .+.+...+|......++|+++.+.++.++++     
T Consensus       454 ~~d~~lyc~LGDv~~d~-------s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~-----  514 (777)
T KOG1128|consen  454 DPDPRLYCLLGDVLHDP-------SLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI-----  514 (777)
T ss_pred             CCcchhHHHhhhhccCh-------HHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc-----
Confidence            23345555566555544       4555555553221       2334555666667789999999999999988     


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                           .+....+|+.+|.+..+.++++.|...|..++..        .|+...++++++..|...|+-.+|...++++++
T Consensus       515 -----nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK  581 (777)
T KOG1128|consen  515 -----NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK  581 (777)
T ss_pred             -----CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence                 3444668899999999999999999999998874        577889999999999999999999999999998


Q ss_pred             HHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 010446          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKL  500 (510)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  500 (510)
                      .        +.....++.|...+....|.+++|++.|.+.+.+.+....+.++..-+
T Consensus       582 c--------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv  630 (777)
T KOG1128|consen  582 C--------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIV  630 (777)
T ss_pred             c--------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHH
Confidence            4        133345566777778899999999999999999988766555544333

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.20  E-value=1.2e-08  Score=103.35  Aligned_cols=206  Identities=19%  Similarity=0.145  Sum_probs=186.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (510)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (510)
                      ..|......|.+.+|.+ .-+++......++..++.++..+..++.++...|+.++|+..-.++.-+.+..  .+.+++.
T Consensus       937 e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~--~g~ds~~ 1013 (1236)
T KOG1839|consen  937 EQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV--LGKDSPN 1013 (1236)
T ss_pred             hhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh--ccCCCHH
Confidence            34555566677888888 78888888888888999999999999999999999999999999998777764  6778888


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Q 010446          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (510)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (510)
                      ....+.+++......++...|...+.++..+..-..++.+|..+.+..+++.++...++++.|+.+.+.|+...+...++
T Consensus      1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred             HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence            88899999999999999999999999999998888888999999999999999999999999999999999999999998


Q ss_pred             CChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 010446          452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKL  500 (510)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  500 (510)
                      ........+..+++.+...+++..|....+....++...+|++|.....
T Consensus      1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~ 1142 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKE 1142 (1236)
T ss_pred             cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchh
Confidence            8888999999999999999999999999999999999999999966543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.18  E-value=3.9e-08  Score=83.46  Aligned_cols=183  Identities=17%  Similarity=0.177  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ...++..|...+..|++.+|+..|++.+..       .+.++....+...+|.+++..|++++|+..+++.+...    +
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----P   73 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----P   73 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----C
Confidence            355889999999999999999999998876       55578888999999999999999999999999988876    5


Q ss_pred             CchHHHHHHHHHHHHHHhhhc-----------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLEN-----------YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE  266 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  266 (510)
                      .++....+++.+|.+++....           ..+|...|+..+..+     ++++..                 .+|..
T Consensus        74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~-----------------~~A~~  131 (203)
T PF13525_consen   74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYA-----------------EEAKK  131 (203)
T ss_dssp             T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTH-----------------HHHHH
T ss_pred             CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHH-----------------HHHHH
Confidence            667788888999988766532           235555555555443     222322                 22322


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHH
Q 010446          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE  346 (510)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  346 (510)
                      ....+.+.           .+.--..+|..|.+.|.+..|+..++.+++.+     ++.+....++..++..|...|..+
T Consensus       132 ~l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  132 RLAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence            22222221           13334567888999999999999999888864     456667778888899999998887


Q ss_pred             HHH
Q 010446          347 EAV  349 (510)
Q Consensus       347 ~A~  349 (510)
                      .|.
T Consensus       196 ~a~  198 (203)
T PF13525_consen  196 AAD  198 (203)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.18  E-value=3.9e-09  Score=88.02  Aligned_cols=165  Identities=16%  Similarity=0.149  Sum_probs=135.9

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      .|+...+ ..++..+...|+-+.+..+..+.....       +....++..+|......|++.+|+..++++...     
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----  129 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----  129 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence            6666666 888999999999999988887754332       333334556899999999999999999999875     


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                         .|.....+..+|.+|.+.|++++|..-|.+++++.        +......+|+|..|.-.|+++.|..++..+... 
T Consensus       130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-  197 (257)
T COG5010         130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-  197 (257)
T ss_pred             ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence               35567889999999999999999999999999983        445678899999999999999999999988762 


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  354 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (510)
                             .+....+..|++.+....|++++|.....+
T Consensus       198 -------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         198 -------PAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             -------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence                   233446778999999999999999887654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.1e-07  Score=78.09  Aligned_cols=227  Identities=15%  Similarity=0.097  Sum_probs=167.2

Q ss_pred             CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (510)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (510)
                      ++....+..|..-+.+|....+|++|...+.+|.+..+...  .....+.++-..+.+...+..+.++..++++|..++.
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~  102 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV  102 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34444556667778888899999999999999998877643  3344567788889999999999999999999999998


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (510)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (510)
                      +.   ..|+.+..-...+--.....++++|+.+|++++.+.++.    .........+...++++.+..++++|-..+.+
T Consensus       103 E~---GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~----dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  103 EC---GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED----DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             Hh---CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            87   345544444444555667789999999999999998762    33334445667889999999999999988888


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 010446          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  478 (510)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (510)
                      -..+..+..  ..+.....+.....+|.-..+|..|..+++...++-    +-..++...++.+|-..| ..|+.++..+
T Consensus       176 e~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip----~f~~sed~r~lenLL~ay-d~gD~E~~~k  248 (308)
T KOG1585|consen  176 EGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP----AFLKSEDSRSLENLLTAY-DEGDIEEIKK  248 (308)
T ss_pred             hhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc----cccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence            776666552  233444455566667777889999999999876642    223455566667776554 6788887766


Q ss_pred             HHH
Q 010446          479 LVL  481 (510)
Q Consensus       479 ~~~  481 (510)
                      .+.
T Consensus       249 vl~  251 (308)
T KOG1585|consen  249 VLS  251 (308)
T ss_pred             HHc
Confidence            543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.15  E-value=1.2e-08  Score=102.18  Aligned_cols=249  Identities=13%  Similarity=0.060  Sum_probs=171.9

Q ss_pred             CCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446          155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (510)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (510)
                      +.-+|....++..+...+...|++++|+...+.++...       |.....++.+|.++...++++++...  .++....
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~   94 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--NLIDSFS   94 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence            45588889999999999999999999999999777654       55566688999999999998888766  5555432


Q ss_pred             HhcC-----------CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh
Q 010446          235 SRYG-----------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA  303 (510)
Q Consensus       235 ~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  303 (510)
                      ....           .+.+..-.+++.+|.||-.+|+.++|...|++++++        .|..+.+++++|..|... +.
T Consensus        95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hH
Confidence            2100           012233368899999999999999999999999998        477889999999999999 99


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 010446          304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL  383 (510)
Q Consensus       304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~  383 (510)
                      ++|+.++.+|+..+-..-  ........|..  .+.....+++.=..+.++.+..        .........+.-+=..|
T Consensus       166 ~KA~~m~~KAV~~~i~~k--q~~~~~e~W~k--~~~~~~~d~d~f~~i~~ki~~~--------~~~~~~~~~~~~l~~~y  233 (906)
T PRK14720        166 EKAITYLKKAIYRFIKKK--QYVGIEEIWSK--LVHYNSDDFDFFLRIERKVLGH--------REFTRLVGLLEDLYEPY  233 (906)
T ss_pred             HHHHHHHHHHHHHHHhhh--cchHHHHHHHH--HHhcCcccchHHHHHHHHHHhh--------hccchhHHHHHHHHHHH
Confidence            999999999998743220  11111122211  1222223333333333332222        11233344556677888


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       384 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      ...++|++++.+++.+++..        +....+...++.+|.  +.|.. ...+++.+.+
T Consensus       234 ~~~~~~~~~i~iLK~iL~~~--------~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~  283 (906)
T PRK14720        234 KALEDWDEVIYILKKILEHD--------NKNNKAREELIRFYK--EKYKD-HSLLEDYLKM  283 (906)
T ss_pred             hhhhhhhHHHHHHHHHHhcC--------CcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence            89999999999999998853        334456777888877  44433 4455555443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=2.7e-08  Score=84.22  Aligned_cols=228  Identities=17%  Similarity=0.136  Sum_probs=163.5

Q ss_pred             HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHH
Q 010446          127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL  206 (510)
Q Consensus       127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  206 (510)
                      .+++..+|..|++++..-.+.          .|.....+..+|.||+...+|..|...|++.-...       |......
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er----------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-------P~~~qYr   81 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELER----------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-------PELEQYR   81 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------hHHHHHH
Confidence            346677888888887766554          67677789999999999999999999999876554       7776666


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 010446          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  286 (510)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (510)
                      ...+..++..+.+..|+.......+        +......++..-+.+.+..+++..+..+.++.       .   ....
T Consensus        82 lY~AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p---~en~  143 (459)
T KOG4340|consen   82 LYQAQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------P---SENE  143 (459)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------c---CCCc
Confidence            6778888899999999877655432        22234455666677778888888777665543       1   2345


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc---
Q 010446          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN---  363 (510)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---  363 (510)
                      +...++.|.+.++.|++++|++-|+.+++.     +.-.|.   .-++++.+++..|+++.|+++..+.++..-+..   
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpl---lAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl  215 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPL---LAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL  215 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhh-----cCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence            778889999999999999999999999985     223333   346789999999999999999988876543310   


Q ss_pred             -----cCCCCC-----------hHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          364 -----YMSLDD-----------SIMENMRIDLAELLHIVGRGQEGRELLE  397 (510)
Q Consensus       364 -----~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (510)
                           ..+++.           ..+..+++-.+.++.+.|+++.|.+.+.
T Consensus       216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                 001111           1122344555677788888888776653

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.13  E-value=3.5e-07  Score=85.65  Aligned_cols=336  Identities=15%  Similarity=0.124  Sum_probs=194.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHH---HHHHHHHHhhhhcCCCch
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ---SLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~  200 (510)
                      -+..+...++.++|.+-+...+..-+-.   +...+.....+..+.....+.-+.-..+   .+++..+.      .-..
T Consensus       175 yie~L~~~d~~~eaa~~la~vln~d~f~---sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~------rftD  245 (835)
T KOG2047|consen  175 YIEYLAKSDRLDEAAQRLATVLNQDEFV---SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR------RFTD  245 (835)
T ss_pred             HHHHHHhccchHHHHHHHHHhcCchhhh---hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc------cCcH
Confidence            3445566677777766666655321111   1122333344455554444332222211   12222222      2234


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh---------------------c------CCCChhHHH-------
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR---------------------Y------GKTSILLVT-------  246 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------~------~~~~~~~~~-------  246 (510)
                      .....+..||..|.+.|.+++|...|++++......                     .      +.+......       
T Consensus       246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~  325 (835)
T KOG2047|consen  246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR  325 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence            566778999999999999999999999987641100                     0      000000000       


Q ss_pred             --HH---------------------HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh
Q 010446          247 --SL---------------------LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA  303 (510)
Q Consensus       247 --~~---------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  303 (510)
                        .+                     ..+-.+-...|+..+-+..|.+|+........  .......+..+|..|...|+.
T Consensus       326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l  403 (835)
T KOG2047|consen  326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDL  403 (835)
T ss_pred             HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcH
Confidence              00                     01122334456777777788887765422211  223346778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--ccCCCCChHH------HHH
Q 010446          304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS--NYMSLDDSIM------ENM  375 (510)
Q Consensus       304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~------~~~  375 (510)
                      +.|...|+++.+.-    -+.-.+.+.+|.+-|..-....+++.|..+.++|...-...  .......+..      ..+
T Consensus       404 ~~aRvifeka~~V~----y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki  479 (835)
T KOG2047|consen  404 DDARVIFEKATKVP----YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI  479 (835)
T ss_pred             HHHHHHHHHhhcCC----ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence            99999999998751    11223468889999999999999999999999987542220  0111222222      234


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (510)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (510)
                      |..++......|-++.-...|++.+++.-        .+..+..+.|..+....-+++|.+.|++.+.+++-   |.-.+
T Consensus       480 Ws~y~DleEs~gtfestk~vYdriidLri--------aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~---p~v~d  548 (835)
T KOG2047|consen  480 WSMYADLEESLGTFESTKAVYDRIIDLRI--------ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW---PNVYD  548 (835)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC---ccHHH
Confidence            55566666677777777777777776542        22344456677777777778888888777775421   11122


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                      +...|......-+..-..+.|..+|++|++
T Consensus       549 iW~tYLtkfi~rygg~klEraRdLFEqaL~  578 (835)
T KOG2047|consen  549 IWNTYLTKFIKRYGGTKLERARDLFEQALD  578 (835)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence            222333333333334456777777777776

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.12  E-value=4e-09  Score=86.98  Aligned_cols=116  Identities=15%  Similarity=0.149  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      ...+..++.+|.++...|++++|+..|++++.+.     ++++....++.++|.++...|++++|+.++++++.+     
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----  101 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----  101 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            4456678999999999999999999999999873     233455678999999999999999999999999987     


Q ss_pred             CCCCcchHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446          280 GTESADLVLPLFSLGSLFI-------KEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (510)
                         .|.....+.++|.++.       ..|++++|+..+.+++..+++..+.+++..
T Consensus       102 ---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        102 ---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             ---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence               3334455566666666       899999999999999999888877666443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.12  E-value=4.5e-09  Score=88.41  Aligned_cols=119  Identities=10%  Similarity=0.103  Sum_probs=103.5

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q 010446          131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG  210 (510)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (510)
                      .++.++++..+++++..          .|+.+..|..+|.+|...|++++|+..|++++.+.       |....++..+|
T Consensus        52 ~~~~~~~i~~l~~~L~~----------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~~~~~~~lA  114 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA----------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------GENAELYAALA  114 (198)
T ss_pred             chhHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence            56778888888888887          88889999999999999999999999999999875       34455578899


Q ss_pred             HHH-Hhhhc--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          211 SMY-STLEN--YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       211 ~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .++ ...|+  +++|...++++++.        +|....++..+|..+...|++++|+.+++++++.
T Consensus       115 ~aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        115 TVLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            874 67777  59999999999986        3555778999999999999999999999999987

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.11  E-value=1.3e-07  Score=82.19  Aligned_cols=186  Identities=17%  Similarity=0.147  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .++..+......|++++|+..|++.+..       .+..+....+...+|.+++..+++++|+..+++.++..    +++
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-------yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----P~~  102 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNR-------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----PTH  102 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----cCC
Confidence            3677888999999999999999999876       45567777788999999999999999999999998885    677


Q ss_pred             hHHHHHHHHHHHHHHhhh---------------c---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCH
Q 010446          200 PLLDAILLHMGSMYSTLE---------------N---YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA  261 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  261 (510)
                      |....+++.+|.++...+               +   ..+|+..+++.++.+     |+++..                 
T Consensus       103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya-----------------  160 (243)
T PRK10866        103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT-----------------  160 (243)
T ss_pred             CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH-----------------
Confidence            888888999998764443               1   234555565555543     222221                 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 010446          262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  341 (510)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  341 (510)
                      .+|...+....+.           .+.--..+|..|.+.|.|..|+.-++.+++.+     ++.+....++..++..|..
T Consensus       161 ~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~  224 (243)
T PRK10866        161 TDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQ  224 (243)
T ss_pred             HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHH
Confidence            2222222222111           13333467888999999999999999888864     4567788888899999999


Q ss_pred             CCCHHHHHHHHHH
Q 010446          342 NGNAEEAVELYKK  354 (510)
Q Consensus       342 ~g~~~~A~~~~~~  354 (510)
                      .|..++|......
T Consensus       225 lg~~~~a~~~~~~  237 (243)
T PRK10866        225 LQLNAQADKVAKI  237 (243)
T ss_pred             cCChHHHHHHHHH
Confidence            9999988876543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=7e-06  Score=74.62  Aligned_cols=339  Identities=16%  Similarity=0.095  Sum_probs=216.6

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHH----HHHHHHHH-HHhhCChHHHHHHHHHHHHhhhhc--------
Q 010446          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVA----ILDIIALG-YVYIGDLKFVQSLLDMMSGIVDSL--------  195 (510)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~--------  195 (510)
                      ...-+..+.....+.+-+++...    ..++..-+    .+..+-.+ |...|+...+...+++........        
T Consensus       178 ~me~d~~dV~~ll~~~~qi~~n~----~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~  253 (629)
T KOG2300|consen  178 IMERDDYDVEKLLQRCGQIWQNI----SSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHD  253 (629)
T ss_pred             HhCccHHHHHHHHHHHHHHHhcc----CCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCcc
Confidence            33345555555555554444432    22332222    23333333 455788887777776654433321        


Q ss_pred             ----CCCchHHHHH--------HHHHH--HHHHhhhcHHHHHHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHH
Q 010446          196 ----KDDEPLLDAI--------LLHMG--SMYSTLENYEKSMLVYQRVINVLESRYGKT--SI----LLVTSLLGMAKVL  255 (510)
Q Consensus       196 ----~~~~~~~~~~--------~~~l~--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la~~~  255 (510)
                          +...+.....        +..+-  .--...|-+++|.++-++++...++....+  .+    .....+-.+..+-
T Consensus       254 e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~  333 (629)
T KOG2300|consen  254 EKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCR  333 (629)
T ss_pred             ccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence                2222222211        11111  112346889999999999988766653333  11    1234456777888


Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 010446          256 GSIGRAKKAVEIYHRVITILELNRGTE--SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC  333 (510)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  333 (510)
                      .-.|++.+|++-...+.+.+.+..++.  ....+.....+|......+.++.|+..|..|.+...+.     .-.+.+..
T Consensus       334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nl  408 (629)
T KOG2300|consen  334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNL  408 (629)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHH
Confidence            889999999999999998887654321  12234556678888888899999999999999875432     22556677


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh
Q 010446          334 SLAHAKCANGNAEEAVELYKKALRVIKDSN-YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  412 (510)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  412 (510)
                      ++|.+|...|+-+.-.+    +++.....+ .........+.+++..|-..+.++++.||...+.+.+++....  +...
T Consensus       409 nlAi~YL~~~~~ed~y~----~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~r  482 (629)
T KOG2300|consen  409 NLAISYLRIGDAEDLYK----ALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNR  482 (629)
T ss_pred             hHHHHHHHhccHHHHHH----HHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHH
Confidence            89999999887654333    333321100 0000112334566677888889999999999999999887332  2234


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC--hHHHHHHHHHHH
Q 010446          413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR--DKEAEKLVLEAL  484 (510)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al  484 (510)
                      .++-.+..|+.+....|+..++.+..+-++++.++.  ++.+........+-.+|...|+  .+...+.+.+-.
T Consensus       483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~q  554 (629)
T KOG2300|consen  483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKHQ  554 (629)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence            455677789999999999999999999999998886  6677777666777788888888  666666666533

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.09  E-value=6.8e-08  Score=82.00  Aligned_cols=184  Identities=17%  Similarity=0.163  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (510)
                      .+..++..|..++..|+|.+|+..|+.+....    +.++....+.+.+|.+++..|++++|+..+++.++..     ++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~   74 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN   74 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            45678899999999999999999999998775    5557777889999999999999999999999998875     56


Q ss_pred             ChhHHHHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIG-----------RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV  309 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  309 (510)
                      ++....+++.+|.++....           ...+|+..++..++.+                      =...-..+|...
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y----------------------P~S~y~~~A~~~  132 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY----------------------PNSEYAEEAKKR  132 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------------TTSTTHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC----------------------cCchHHHHHHHH
Confidence            6777888888888876542           1224444444444432                      111222333333


Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCCh
Q 010446          310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG  389 (510)
Q Consensus       310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  389 (510)
                      +..+.+.           .+.--..+|..|.+.|.+..|+..++.+++.+       |+.+....++..++..|...|..
T Consensus       133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-------p~t~~~~~al~~l~~~y~~l~~~  194 (203)
T PF13525_consen  133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-------PDTPAAEEALARLAEAYYKLGLK  194 (203)
T ss_dssp             HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-------TTSHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCCchHHHHHHHHHHHHHHhCCh
Confidence            3322221           22334568999999999999999999999884       56677778889999999999998


Q ss_pred             HHHH
Q 010446          390 QEGR  393 (510)
Q Consensus       390 ~~A~  393 (510)
                      +.|.
T Consensus       195 ~~a~  198 (203)
T PF13525_consen  195 QAAD  198 (203)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.08  E-value=5.4e-09  Score=87.21  Aligned_cols=159  Identities=13%  Similarity=0.090  Sum_probs=133.4

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH
Q 010446          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (510)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (510)
                      .+....+...|+-+.+..+..++...          .+.....+..+|......|++..|+..++++....       |.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~----------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------p~  132 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA----------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------PT  132 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc----------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------CC
Confidence            66778888999988888887776544          66667777779999999999999999999998764       44


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (510)
                      ....++.+|.+|.+.|++++|..-|.+++++..        .......|+|..|.-.|+++.|..++..+...       
T Consensus       133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--------~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-------  197 (257)
T COG5010         133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAP--------NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-------  197 (257)
T ss_pred             ChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--------CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-------
Confidence            556689999999999999999999999999852        22456889999999999999999999988764       


Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (510)
                       .+....+..+++.+....|++++|.+...+-
T Consensus       198 -~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         198 -PAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             -CCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence             3445678889999999999999998876543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.07  E-value=1.2e-08  Score=84.25  Aligned_cols=117  Identities=14%  Similarity=0.114  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (510)
                      ......+..+|.++...|++++|+..|++++.+.       +++.....++.++|.++...|++++|+.++++++.+.  
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-------~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--  102 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-------IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--  102 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence            3456788999999999999999999999999872       3344455688999999999999999999999999763  


Q ss_pred             hhCCCChhHHHHHHHHHHHHH-------hccCHHHHHHHHHHHHHHHHHHhCCCChhhH
Q 010446          406 YKGKEHPSFVTHLLNLAASYS-------RSKNFVEAERLLRICLDIMTKTVGPDDQSIS  457 (510)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  457 (510)
                            |.....+.++|.++.       ..|++++|...+.+++..+++..+.+++...
T Consensus       103 ------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        103 ------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             ------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence                  223344445555555       9999999999999999999988777764443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=7e-07  Score=85.97  Aligned_cols=266  Identities=14%  Similarity=0.096  Sum_probs=156.5

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHH----HhhhhcCCCchHH---------HHHHHHHHHHHHhhhcHHHHHH
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMS----GIVDSLKDDEPLL---------DAILLHMGSMYSTLENYEKSML  224 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~  224 (510)
                      ......+|++.+..+...+|.+.|+++|+++-    ++.+-+.++.+.+         ...|...|......|+.+.|+.
T Consensus       854 RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~  933 (1416)
T KOG3617|consen  854 RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALS  933 (1416)
T ss_pred             ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHH
Confidence            44455688999999999999999999998743    2332222332221         1346677888899999999999


Q ss_pred             HHHHHHHHHHHh-----cCCCC--------hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 010446          225 VYQRVINVLESR-----YGKTS--------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  291 (510)
Q Consensus       225 ~~~~al~~~~~~-----~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  291 (510)
                      +|..|-+.+...     .|.-+        .....+.+.+|..|...|++.+|+.+|.+|......+.--...+.-.-+.
T Consensus       934 ~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen  934 FYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred             HHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999987764322     01100        11233567899999999999999999988755432221000111122222


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHHHHhhccCC
Q 010446          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK-----ALRVIKDSNYMS  366 (510)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-----al~~~~~~~~~~  366 (510)
                      +++.. ....+.-.|..||++.--.               ...-..+|.+.|.+.+|+++.-+     ++++..+....+
T Consensus      1014 nlal~-s~~~d~v~aArYyEe~g~~---------------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1014 NLALM-SGGSDLVSAARYYEELGGY---------------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred             HHHhh-cCchhHHHHHHHHHHcchh---------------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence            33221 1122333444455432110               01112346666777777665322     344444321222


Q ss_pred             CCChHHHHHHHHHHHHHHHcCChHHHHHHHH------HHHHHHHHh-----------hC------CCChhHHHHHHHHHH
Q 010446          367 LDDSIMENMRIDLAELLHIVGRGQEGRELLE------ECLLITEKY-----------KG------KEHPSFVTHLLNLAA  423 (510)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~-----------~~------~~~~~~~~~~~~la~  423 (510)
                      .|+    ..+..-+..+....+|++|..++-      .|+.+....           ..      ++......++..+|.
T Consensus      1078 sDp----~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1078 SDP----KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred             CCH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence            333    234667888888889999887754      444443211           00      112234567888999


Q ss_pred             HHHhccCHHHHHHHHHHHHH
Q 010446          424 SYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~  443 (510)
                      ++.++|.|..|-+-|.+|-+
T Consensus      1154 ~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred             HHHhccchHHHHHHHhhhhh
Confidence            99999999999888877643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.06  E-value=5e-08  Score=92.59  Aligned_cols=218  Identities=15%  Similarity=0.153  Sum_probs=164.8

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      .+..+...|-...|+..+++                  ...+.....||...|+..+|..+..+-++.        +...
T Consensus       404 laell~slGitksAl~I~Er------------------lemw~~vi~CY~~lg~~~kaeei~~q~lek--------~~d~  457 (777)
T KOG1128|consen  404 LAELLLSLGITKSALVIFER------------------LEMWDPVILCYLLLGQHGKAEEINRQELEK--------DPDP  457 (777)
T ss_pred             HHHHHHHcchHHHHHHHHHh------------------HHHHHHHHHHHHHhcccchHHHHHHHHhcC--------CCcc
Confidence            44556666767777666665                  335566677888889888888887765541        1122


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                      ..|..+|.+       -.=-.+|+++.++.+.       ..+.+...+|......++|.++.++++.++++        .
T Consensus       458 ~lyc~LGDv-------~~d~s~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------n  515 (777)
T KOG1128|consen  458 RLYCLLGDV-------LHDPSLYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEI--------N  515 (777)
T ss_pred             hhHHHhhhh-------ccChHHHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhc--------C
Confidence            224444444       4444566666665433       22445566777777899999999999999998        6


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (510)
                      |....+|+.+|.+..+.+++..|.+.|..++..        .|+...+++|++..|...|+-.+|...+.++++..    
T Consensus       516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn----  583 (777)
T KOG1128|consen  516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN----  583 (777)
T ss_pred             ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC----
Confidence            778899999999999999999999999999874        57778999999999999999999999999999873    


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010446          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (510)
                         .++   ..++.|.-.+....|.+++|++.+.+.+.+.+...
T Consensus       584 ---~~~---w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  584 ---YQH---WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             ---CCC---CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence               223   23557777888899999999999999988876553

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.05  E-value=8.4e-09  Score=80.25  Aligned_cols=102  Identities=9%  Similarity=0.092  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      ++....++.+|..++..|++++|...|+-...+        +|.....+++||.++..+|++++|+..|.+++.+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            556666899999999999999999999988775        4677889999999999999999999999999987     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                         .|+....+.++|.++...|+.+.|.+.|+.++..+
T Consensus        99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence               46678899999999999999999999999999987

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=2.2e-06  Score=77.59  Aligned_cols=270  Identities=13%  Similarity=0.123  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH-------
Q 010446          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL-------  233 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------  233 (510)
                      ....+...+..-...|+..-|...|+.+....   ++ +......+...|..-..+..++.|...|.-|++..       
T Consensus       206 ~v~~wikyarFE~k~g~~~~aR~VyerAie~~---~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raee  281 (677)
T KOG1915|consen  206 KVSNWIKYARFEEKHGNVALARSVYERAIEFL---GD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEE  281 (677)
T ss_pred             cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence            34556667777778888889999998888765   32 23334445566666677778888877777666542       


Q ss_pred             --------HHhcCC---------------------CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC-C
Q 010446          234 --------ESRYGK---------------------TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE-S  283 (510)
Q Consensus       234 --------~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~  283 (510)
                              ++.+|.                     ++|..-++++..-.+-...|+.+.-.+.|++|+.-........ .
T Consensus       282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W  361 (677)
T KOG1915|consen  282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW  361 (677)
T ss_pred             HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH
Confidence                    111111                     2344455666777777778999999999999986421100000 0


Q ss_pred             cchHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446          284 ADLVLPLFSLGS-LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       284 ~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (510)
                      ...+..+.+.+. .-....+.+.+.+.|+.++++..    ..+-..+..+...|....++.+...|...+-.|+..+.+.
T Consensus       362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~  437 (677)
T KOG1915|consen  362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD  437 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch
Confidence            011122222221 12356788999999999988631    1222344445545554445555544444444433221110


Q ss_pred             cc-----------------------CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 010446          363 NY-----------------------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL  419 (510)
Q Consensus       363 ~~-----------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  419 (510)
                      +.                       .-.-.|....++...|.+-..+|+.+.|...|+-|+.--  .  -+.|.  ..+.
T Consensus       438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp--~--ldmpe--llwk  511 (677)
T KOG1915|consen  438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP--A--LDMPE--LLWK  511 (677)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--c--cccHH--HHHH
Confidence            00                       001123335677888898899999999999998776521  0  12222  2344


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          420 NLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      .....-...|.+++|..+|++.++.
T Consensus       512 aYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  512 AYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HhhhhhhhcchHHHHHHHHHHHHHh
Confidence            5556667889999999999999884

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.05  E-value=1.6e-06  Score=76.96  Aligned_cols=271  Identities=15%  Similarity=0.089  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .++..+...-..|+++.|-.+..++-+..         ...........+......||++.|..-..++....       
T Consensus       120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~---------~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-------  183 (400)
T COG3071         120 AYLLAAEAAQQRGDEDRANRYLAEAAELA---------GDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-------  183 (400)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHhccC---------CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-------
Confidence            35666788899999999999999886541         23344566778889999999999999998887664       


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HhhcCCHHHHHHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV--LGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      |....++.....+|...|++.+...+..+..+..    --+++.. .-+.+.+..  +...++-..+..+...--+.-.+
T Consensus       184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~----~l~~~e~-~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~  258 (400)
T COG3071         184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG----LLSDEEA-ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK  258 (400)
T ss_pred             cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc----CCChHHH-HHHHHHHHHHHHHHHhccccchHHHHHHHhccHH
Confidence            3334446777889999999999988887664421    0112222 222222221  22222222222211111111111


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (510)
                      ..  .+   ......++.-+...|+.++|.+...++++..      .++...   ..++  ...-++...=++..++.++
T Consensus       259 lr--~~---p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~L~---~~~~--~l~~~d~~~l~k~~e~~l~  322 (400)
T COG3071         259 LR--ND---PELVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDPRLC---RLIP--RLRPGDPEPLIKAAEKWLK  322 (400)
T ss_pred             hh--cC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cChhHH---HHHh--hcCCCCchHHHHHHHHHHH
Confidence            10  12   3344556778899999999999999998742      233311   1111  2345677776676776666


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010446          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  437 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (510)
                      .       .++.+   ..+..||.++.+.+.|.+|..+++.+++..         .....+..+|.++.++|+..+|.+.
T Consensus       323 ~-------h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~  383 (400)
T COG3071         323 Q-------HPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLR---------PSASDYAELADALDQLGEPEEAEQV  383 (400)
T ss_pred             h-------CCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---------CChhhHHHHHHHHHHcCChHHHHHH
Confidence            5       34444   456789999999999999999999888753         2345678899999999999999999


Q ss_pred             HHHHHHHHH
Q 010446          438 LRICLDIMT  446 (510)
Q Consensus       438 ~~~al~~~~  446 (510)
                      +++++....
T Consensus       384 r~e~L~~~~  392 (400)
T COG3071         384 RREALLLTR  392 (400)
T ss_pred             HHHHHHHhc
Confidence            999996543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=99.05  E-value=3.3e-05  Score=77.55  Aligned_cols=334  Identities=11%  Similarity=0.044  Sum_probs=218.3

Q ss_pred             CCCChhHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          155 GNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      ...+...+.+...+|.++. ...+++.|+.+++++..+.+. ..-......+...++.++.+.+... |....++.++..
T Consensus        52 ~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~  129 (608)
T PF10345_consen   52 KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS  129 (608)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence            3344566778899999987 689999999999999888765 3333334555667788988888777 999999999987


Q ss_pred             HHhcCCCChhHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          234 ESRYGKTSILLVTSLLGM-AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR  312 (510)
Q Consensus       234 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  312 (510)
                      +..   .+.....+...+ ...+...+++..|.+.++..........  +....+.+....+.+....+..+++++..++
T Consensus       130 ~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~  204 (608)
T PF10345_consen  130 ETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQR  204 (608)
T ss_pred             hcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence            652   122222333333 3333344899999999999998875432  2233334445556777788889999999999


Q ss_pred             HHHHHHHH--cCCCChHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHhhccCC------CC--------------
Q 010446          313 ILKIYTKV--YGENDGRVGMAMCSLAH--AKCANGNAEEAVELYKKALRVIKDSNYMS------LD--------------  368 (510)
Q Consensus       313 al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~--------------  368 (510)
                      +.......  .+..++....++..+-.  ++...|+++.+...+++.-....+.....      ++              
T Consensus       205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~  284 (608)
T PF10345_consen  205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS  284 (608)
T ss_pred             HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence            97776654  11123334445544444  44567888888877776655555432111      00              


Q ss_pred             ------------ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCChh---------------HHHHH
Q 010446          369 ------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPS---------------FVTHL  418 (510)
Q Consensus       369 ------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~---------------~~~~~  418 (510)
                                  ....+-++.--|......|..++|.+++++++...++...   ...+.               ...+.
T Consensus       285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~  364 (608)
T PF10345_consen  285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL  364 (608)
T ss_pred             CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence                        0111223333455566677778999999999999887651   11100               12234


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446          419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGP-DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (510)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  495 (510)
                      ..++.+..-.|++.+|....+.+.....+...+ ........++..|..+...|+.+.|..+|.+..-......++..
T Consensus       365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~  442 (608)
T PF10345_consen  365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKS  442 (608)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCC
Confidence            456777888999999999999888866543221 12234556678888899999999999999966544444444333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.04  E-value=1.9e-07  Score=81.22  Aligned_cols=175  Identities=11%  Similarity=0.055  Sum_probs=136.8

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010446          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (510)
                      ....++..|..+...|++++|+..|++.+...     +..+....+...+|.++.+.+++++|+..+++.++.       
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-------   98 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-------   98 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------
Confidence            35557778899999999999999999998853     456677778899999999999999999999999988       


Q ss_pred             CCCChHHHHHHHHHHHHHHHcC---------------C---hHHHHHHHHHHHHHHHHhhCCCChh--------------
Q 010446          366 SLDDSIMENMRIDLAELLHIVG---------------R---GQEGRELLEECLLITEKYKGKEHPS--------------  413 (510)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~--------------  413 (510)
                      .|+++....+++.+|.++...+               +   ..+|+..+++.+..+.     +.+.              
T Consensus        99 ~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP-----~S~ya~~A~~rl~~l~~~  173 (243)
T PRK10866         99 NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP-----NSQYTTDATKRLVFLKDR  173 (243)
T ss_pred             CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc-----CChhHHHHHHHHHHHHHH
Confidence            5677777888888998764443               1   2356666666655432     1111              


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010446          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  482 (510)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  482 (510)
                      .+.--..+|..|.+.|.|..|+.-++.+++-+     |+.+...+++..+..+|...|..++|.+....
T Consensus       174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            12223356888999999999999999998854     56778889999999999999999999886544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.01  E-value=7.2e-08  Score=77.18  Aligned_cols=135  Identities=11%  Similarity=0.092  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ....+..+......++...+...+++.+..       .++.+....+...+|.+++..|++++|...|+.++...    +
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~   79 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKD-------YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----P   79 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----C
Confidence            334566666666899999988877776654       45566667888999999999999999999999988743    3


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (510)
                      +......+...++.++...|++++|+..++..         .+.+........+|.+|...|++++|+..|++|+
T Consensus        80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   80 DPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            33445566788999999999999999998652         2334556678889999999999999999999874

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.01  E-value=1.6e-08  Score=80.24  Aligned_cols=102  Identities=16%  Similarity=0.208  Sum_probs=89.4

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      +|........+|..+...|++++|...++++....       |....++..+|.++...|++++|..++++++..     
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----   80 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-----   80 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            77778889999999999999999999999987653       334556889999999999999999999998875     


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                         .|.....+..+|.++...|++++|+..++++++.
T Consensus        81 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        81 ---DPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               2445677889999999999999999999999987

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.01  E-value=7.6e-08  Score=77.04  Aligned_cols=123  Identities=22%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             HcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 010446          299 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  378 (510)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  378 (510)
                      ..++...+...+++.+.-     .++.+....+...+|.++...|++++|...|++++..       .+++.....+...
T Consensus        23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l~~~a~l~   90 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPELKPLARLR   90 (145)
T ss_pred             HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHHHHHHHHH
Confidence            578888887777766653     2445566778888999999999999999999999886       3555666667789


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010446          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (510)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (510)
                      +|.++...|++++|+..++..         +..+........+|.+|...|++++|+..|++++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999998652         1334455678889999999999999999999874

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.01  E-value=1.3e-06  Score=82.06  Aligned_cols=243  Identities=14%  Similarity=0.138  Sum_probs=168.9

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (510)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (510)
                      +..|+..+-+..|.+|+..+..    ..........+..+|..|...|+.+.|..+|+++.+..   -..-.+++.+|..
T Consensus       358 l~e~~~~~~i~tyteAv~~vdP----~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y~~v~dLa~vw~~  430 (835)
T KOG2047|consen  358 LYEGNAAEQINTYTEAVKTVDP----KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---YKTVEDLAEVWCA  430 (835)
T ss_pred             hhcCChHHHHHHHHHHHHccCc----ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---ccchHHHHHHHHH
Confidence            4467788888888888775432    12233345678899999999999999999999988764   2233567888999


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHH----hcCCCChh------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          209 MGSMYSTLENYEKSMLVYQRVINVLES----RYGKTSIL------LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                      .|..-.+..+++.|+.+.++|...-..    .+....|.      ....+..++......|-++.....|++.+++.   
T Consensus       431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr---  507 (835)
T KOG2047|consen  431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR---  507 (835)
T ss_pred             HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---
Confidence            999999999999999999988754221    12223332      23456667777778888888888999988873   


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH---HHHHHHHHHCCCHHHHHHHHHHH
Q 010446          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM---CSLAHAKCANGNAEEAVELYKKA  355 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~a  355 (510)
                           ..+.....|.|..+....-+++|.+.|++.+.++      ..|.....|   ......-...-+.+.|..+|++|
T Consensus       508 -----iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF------k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa  576 (835)
T KOG2047|consen  508 -----IATPQIIINYAMFLEEHKYFEESFKAYERGISLF------KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA  576 (835)
T ss_pred             -----cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC------CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                 2234566778888888888899999999888875      234433333   33333333445788999999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (510)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (510)
                      ++.+.        +...-.++...|.+-.+-|-...|+..|++|-
T Consensus       577 L~~Cp--------p~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  577 LDGCP--------PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HhcCC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            98531        22223344556666666777777887777754

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=1.5e-07  Score=79.81  Aligned_cols=225  Identities=16%  Similarity=0.083  Sum_probs=161.7

Q ss_pred             HhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 010446          173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA  252 (510)
Q Consensus       173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  252 (510)
                      .+..+|++|++++..-.+.       .|.....+..+|.||+...+|..|..+|++.-..        .|.........+
T Consensus        21 I~d~ry~DaI~~l~s~~Er-------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~A   85 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELER-------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQA   85 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHH
Confidence            4566788888877654433       3544455889999999999999999999987654        466677777889


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 010446          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (510)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (510)
                      ..++..+.+.+|+.......+        +......+.-.-+.+.+..+++..+..+.++.-          ....+...
T Consensus        86 QSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~  147 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQ  147 (459)
T ss_pred             HHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchh
Confidence            999999999999887765532        112223344445666777788877766555421          12355678


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----
Q 010446          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----  408 (510)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----  408 (510)
                      .+.|-+.++.|++++|.+-|+.+++.       +.-.+.++   ++++.++.+.|+++.|+++..+.++...+...    
T Consensus       148 in~gCllykegqyEaAvqkFqaAlqv-------sGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgI  217 (459)
T KOG4340|consen  148 INLGCLLYKEGQYEAAVQKFQAALQV-------SGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGI  217 (459)
T ss_pred             ccchheeeccccHHHHHHHHHHHHhh-------cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence            89999999999999999999999987       34444443   78999999999999999998887765433211    


Q ss_pred             ------CC-----C------hhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446          409 ------KE-----H------PSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (510)
Q Consensus       409 ------~~-----~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (510)
                            .+     +      .....+++..+.++.+.|+++.|.+.+..
T Consensus       218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD  266 (459)
T KOG4340|consen  218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD  266 (459)
T ss_pred             cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence                  00     0      11234566678889999999998876643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=1e-08  Score=87.26  Aligned_cols=101  Identities=17%  Similarity=0.205  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (510)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (510)
                      ....+.+-..|..+.+.++|.+|+..|.+||++          .|..+..|.+.+.+|.++|.++.|++-.+.++.+.  
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l----------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--  145 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL----------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--  145 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--
Confidence            345566888999999999999999999999999          99999999999999999999999999999999875  


Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                           |....+|..||.+|..+|++.+|++.|++++++
T Consensus       146 -----p~yskay~RLG~A~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  146 -----PHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             -----hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence                 888899999999999999999999999999987

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.00  E-value=2.7e-08  Score=78.89  Aligned_cols=103  Identities=14%  Similarity=0.096  Sum_probs=90.5

Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      +|........+|..+...|++++|...+++++..        .|.....+..+|.++...|++++|..++++++..    
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----   80 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL----   80 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            3455677889999999999999999999999886        4556788999999999999999999999999874    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                          +|.....+..+|.++...|++++|+..++++++..
T Consensus        81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence                35556778899999999999999999999999873

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.99  E-value=3.1e-08  Score=77.14  Aligned_cols=102  Identities=10%  Similarity=-0.042  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (510)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (510)
                      ...++.++..+..++..|++++|...|+-....          +|..+..++.||.++...|++++|+..|.++..+.  
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--   99 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--   99 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence            346677899999999999999999999999888          99999999999999999999999999999998875  


Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                        +++   ...+.++|.++...|+.+.|.+.|+.++...
T Consensus       100 --~dd---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        100 --IDA---PQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             --CCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence              333   4458999999999999999999999999987

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=1.9e-08  Score=85.67  Aligned_cols=122  Identities=25%  Similarity=0.233  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ..+..+..-|.-....++|.+|+..|.+|+++        .|..+..|.+.|.+|.++|.++.|++-++.++.+      
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------  144 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------  144 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence            45666778899999999999999999999998        6777899999999999999999999999999985      


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ  390 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  390 (510)
                        +|....+|..||.+|..+|++++|++.|++++++       .|+...   ...+|..+-.+.++..
T Consensus       145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-------dP~Ne~---~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-------DPDNES---YKSNLKIAEQKLNEPK  200 (304)
T ss_pred             --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-------CCCcHH---HHHHHHHHHHHhcCCC
Confidence              6888999999999999999999999999999998       455553   3345555544444443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=1.7e-06  Score=71.97  Aligned_cols=192  Identities=19%  Similarity=0.090  Sum_probs=140.3

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (510)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (510)
                      +.++-+++....+......  .-.++....+-.+..+....|+.+-|..++++....+        |....+...-|..+
T Consensus        27 nseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~l   96 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLL   96 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHH
Confidence            4444455555554443332  1123445567777788888999999999988876552        33345555678888


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHH
Q 010446          298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI  377 (510)
Q Consensus       298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  377 (510)
                      ...|++++|+++|+..++        ++|....++-.--.+...+|+.-+|++.+.+-++.+.      .|    ..+|.
T Consensus        97 Ea~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~------~D----~EAW~  158 (289)
T KOG3060|consen   97 EATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM------ND----QEAWH  158 (289)
T ss_pred             HHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc------Cc----HHHHH
Confidence            999999999999998876        4555555555555667778998899999999888853      22    35778


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHH
Q 010446          378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDIM  445 (510)
Q Consensus       378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~  445 (510)
                      .++.+|...|++++|.-++++.+-+        .|.....+..+|.++.-+|   +..-|.++|.+++++.
T Consensus       159 eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  159 ELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999998764        4555566677788777666   5778999999999963

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=2.8e-06  Score=70.65  Aligned_cols=195  Identities=15%  Similarity=0.189  Sum_probs=148.0

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 010446          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (510)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (510)
                      ...+.++-+++..+.+.-...    +...++.-.++-.+..+....|+.+-|..++++....+    +.++   .+...-
T Consensus        24 ~~rnseevv~l~~~~~~~~k~----~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~---RV~~lk   92 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKS----GALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF----PGSK---RVGKLK   92 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhh----cccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC----CCCh---hHHHHH
Confidence            345677777777777665443    22356666777778888888999999999998876655    2223   334566


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 010446          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  289 (510)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (510)
                      |..+...|++++|+++|+..++        ++|....++..--.+...+|+.-+|++.+..-++.+        +....+
T Consensus        93 am~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EA  156 (289)
T KOG3060|consen   93 AMLLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEA  156 (289)
T ss_pred             HHHHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHH
Confidence            7788899999999999998875        345555556666667788899999999988888774        445789


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHH
Q 010446          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVI  359 (510)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~  359 (510)
                      |..++.+|...|+|++|.-++++.+-+        .|.....+..+|.+++-+|   +..-|.++|.+++++.
T Consensus       157 W~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  157 WHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999998864        4555556667777776655   5678999999999984

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=3.4e-06  Score=69.63  Aligned_cols=224  Identities=11%  Similarity=0.010  Sum_probs=156.5

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      ....+..+..-+.+|....+|++|...+.++.+..+. +......+..+-..+.+......+.++..+|+++..++.+..
T Consensus        27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G  105 (308)
T KOG1585|consen   27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG  105 (308)
T ss_pred             chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence            3344556666777888899999999999998876654 222234456677778888889999999999999999998763


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                         .|+.+..-...+--....-++++|+.+|++++.+.+...  ........+...++++.+..++++|-..+.+-..+.
T Consensus       106 ---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~  180 (308)
T KOG1585|consen  106 ---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA  180 (308)
T ss_pred             ---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence               343343333444445677899999999999999987632  223345567788899999999999999988877766


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  396 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  396 (510)
                      .+.-  ..+.....+.....+|....+|..|...++..-++-.      -..+.-..+..+|-..| ..|+.++....+
T Consensus       181 ~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~------f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  181 DKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA------FLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc------ccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            5542  2344445566666677777899999999998766521      12223334445555554 456766665544

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.94  E-value=3.4e-08  Score=100.07  Aligned_cols=212  Identities=19%  Similarity=0.131  Sum_probs=190.4

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (510)
                      -....+......|.+.+|.+ .-+++.......+.-++..+..+..++.++...|++++|+.+-.++.-+.++..|.+++
T Consensus       934 ~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen  934 DSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred             hhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence            34455667777888999998 88888888877777899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010446          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (510)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (510)
                      .....+.+++...+..++...|...+.++..+..-  ..++++|..+.+..+++.++...++++.|+.+.+.|....+..
T Consensus      1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L--s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL--SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred             HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc--ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999877654  3567788888888999999999999999999999999999999


Q ss_pred             hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHH
Q 010446          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (510)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (510)
                      .++....++..+..+++.+...+++..|....+....++...+|++|.....+-.
T Consensus      1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~ 1145 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSE 1145 (1236)
T ss_pred             cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHH
Confidence            9988889999999999999999999999999999999999999999877765543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.94  E-value=8e-08  Score=79.49  Aligned_cols=115  Identities=18%  Similarity=0.241  Sum_probs=89.1

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (510)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (510)
                      ..+..+..+.++|..+...|++++|+.+|++++....       +++....++.++|.++...|++++|+.++++++...
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  102 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-------DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN  102 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3455777899999999999999999999999998732       333345678999999999999999999999999852


Q ss_pred             HHhhCCCChhHHHHHHHHHHHHHhcc-------CHHHHHHHHHHHHHHHHHHhCCCC
Q 010446          404 EKYKGKEHPSFVTHLLNLAASYSRSK-------NFVEAERLLRICLDIMTKTVGPDD  453 (510)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~  453 (510)
                              |.....+..+|.++...|       ++++|+..++++++..++....++
T Consensus       103 --------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p  151 (172)
T PRK02603        103 --------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP  151 (172)
T ss_pred             --------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence                    344566677777777655       467777777777777666654443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.94  E-value=5.8e-08  Score=86.56  Aligned_cols=252  Identities=16%  Similarity=0.129  Sum_probs=152.9

Q ss_pred             HHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010446          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (510)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (510)
                      -++..|+|..++.-.+ ..      ..+.+........+.+++..+|+++..+.-...          ..+|. ..+...
T Consensus        10 n~fy~G~Y~~~i~e~~-~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~   71 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRL   71 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHH
T ss_pred             HHHHhhhHHHHHHHhh-cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHH
Confidence            4567899999986665 11      122334445567788899999988765543321          12222 334456


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (510)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (510)
                      ++..+...++-+.++.-++..+.      ..............|.++...|++++|++.+.+.          .+   ..
T Consensus        72 la~y~~~~~~~e~~l~~l~~~~~------~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------~~---lE  132 (290)
T PF04733_consen   72 LAEYLSSPSDKESALEELKELLA------DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------GS---LE  132 (290)
T ss_dssp             HHHHHCTSTTHHCHHHHHHHCCC------TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----------TC---HH
T ss_pred             HHHHHhCccchHHHHHHHHHHHH------hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----------Cc---cc
Confidence            66666554555444443332211      1112122344566678888899999998887643          11   23


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhhC
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKG  408 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~  408 (510)
                      .......++...++++.|.+.++.+.+.       .. +..+..  ...+++....|  ++.+|...|++..+       
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-------~e-D~~l~q--La~awv~l~~g~e~~~~A~y~f~El~~-------  195 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQI-------DE-DSILTQ--LAEAWVNLATGGEKYQDAFYIFEELSD-------  195 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCC-------SC-CHHHHH--HHHHHHHHHHTTTCCCHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC-cHHHHH--HHHHHHHHHhCchhHHHHHHHHHHHHh-------
Confidence            4445667899999999999888775443       22 222211  22333334444  68999999988532       


Q ss_pred             CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 010446          409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALY  485 (510)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~  485 (510)
                       ..+....+++.++.++..+|+|++|.+.+++++.        .+|....++.+++.+....|+. +.+.+++.+...
T Consensus       196 -~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  196 -KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             -CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             -ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence             2234567788999999999999999999999875        2455567889999999999998 445556655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.94  E-value=9e-08  Score=79.19  Aligned_cols=112  Identities=17%  Similarity=0.274  Sum_probs=88.5

Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      ..+..+..++.+|..+...|++++|+.+|++++....     +.+....++.++|.++...|++++|+.++++++..   
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  101 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---  101 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            3456677789999999999999999999999998642     23344678999999999999999999999999987   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHcC
Q 010446          278 NRGTESADLVLPLFSLGSLFIKEGK-------AVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~  322 (510)
                           .|.....+..+|.++...|+       +++|+..++++++..++...
T Consensus       102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~  148 (172)
T PRK02603        102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR  148 (172)
T ss_pred             -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence                 34556777888888877665       56666666666666655543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.89  E-value=5.6e-08  Score=86.64  Aligned_cols=263  Identities=17%  Similarity=0.145  Sum_probs=161.0

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      .++.++-.|+|..++.-++  +.        ....+........+.+++..+|+++..+.-...         ..+|...
T Consensus         7 ~vrn~fy~G~Y~~~i~e~~--~~--------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---------~~~~~l~   67 (290)
T PF04733_consen    7 TVRNQFYLGNYQQCINEAS--LK--------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---------SSSPELQ   67 (290)
T ss_dssp             HHHHHHCTT-HHHHCHHHH--CH--------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---------TSSCCCH
T ss_pred             HHHHHHHhhhHHHHHHHhh--cc--------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---------CCChhHH
Confidence            4566788899999987655  11        223455667778889999999998766543321         1223322


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                       +...++..+...++-+.++.-++.       ....... .........|.++...|++++|++.+.+.           
T Consensus        68 -av~~la~y~~~~~~~e~~l~~l~~-------~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----------  128 (290)
T PF04733_consen   68 -AVRLLAEYLSSPSDKESALEELKE-------LLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----------  128 (290)
T ss_dssp             -HHHHHHHHHCTSTTHHCHHHHHHH-------CCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------
T ss_pred             -HHHHHHHHHhCccchHHHHHHHHH-------HHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------
Confidence             235556555443444444333322       2212211 22334556778899999999999887653           


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
Q 010446          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG--NAEEAVELYKKALRVIK  360 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~  360 (510)
                        ....+......+|..+++++.|.+.++.+-++     .   .+...+....+.+....|  ++.+|...|++..+.+ 
T Consensus       129 --~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-  197 (290)
T PF04733_consen  129 --GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----D---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-  197 (290)
T ss_dssp             --TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----S---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred             --CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-
Confidence              12345556678899999999999888776542     1   122222222233333334  6899999999854321 


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCH-HHHHHHHH
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF-VEAERLLR  439 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~  439 (510)
                           ++    ...+++.+|.++..+|++++|...+++++.        ..|....++.+++.+....|+. +.+.+++.
T Consensus       198 -----~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  198 -----GS----TPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             -----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             -----CC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence                 11    234568899999999999999999998764        2355667888999999999998 55666666


Q ss_pred             HHHHHHHHHhCCCChhhH
Q 010446          440 ICLDIMTKTVGPDDQSIS  457 (510)
Q Consensus       440 ~al~~~~~~~~~~~~~~~  457 (510)
                      +....     .|+||.+.
T Consensus       261 qL~~~-----~p~h~~~~  273 (290)
T PF04733_consen  261 QLKQS-----NPNHPLVK  273 (290)
T ss_dssp             HCHHH-----TTTSHHHH
T ss_pred             HHHHh-----CCCChHHH
Confidence            65442     35665544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.88  E-value=1e-07  Score=73.71  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      .+++.+|..+...|++++|+..+.+++..     .++++....++..+|.++...|++++|+.++++++...     +++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            46788999999999999999999999876     22344456788999999999999999999999998753     344


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      +....++..+|.++...|++++|..++++++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            555677899999999999999999999999987

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.87  E-value=8.6e-08  Score=74.17  Aligned_cols=103  Identities=16%  Similarity=0.124  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (510)
                      .+++.+|..+...|++++|...+.+++..       .++++....++..+|.++...|++++|+.++++++...     +
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-------YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----P   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----C
Confidence            46788999999999999999999999876       34444445677889999999999999999999988753     3


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      .++....++..+|.++...|++++|..+++++++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            44455678899999999999999999999999885

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.79  E-value=1.1e-07  Score=88.01  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +...|..++..|++++|+.+|++++..          .|..+.++..+|.++...|++++|+..+++++.+.       |
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~----------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------P   67 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL----------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-------P   67 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c
Confidence            667889999999999999999999988          77888999999999999999999999999998875       4


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      ....+++.+|.++...|++++|+..|++++.+
T Consensus        68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            44566899999999999999999999999986

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.75  E-value=1.8e-06  Score=78.74  Aligned_cols=134  Identities=20%  Similarity=0.179  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ....+.+..+..++..|++++|+..++..+..        .|+....+...+.++...++..+|.+.+++++..      
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------  369 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL------  369 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------
Confidence            33556777888888888888888888875553        5666777777888888888888888888888874      


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                        .|.......++|..+.+.|++.+|+..++..+..       .++++   ..|..||+.|..+|+..+|...+-+....
T Consensus       370 --~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-------~p~dp---~~w~~LAqay~~~g~~~~a~~A~AE~~~~  437 (484)
T COG4783         370 --DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-------DPEDP---NGWDLLAQAYAELGNRAEALLARAEGYAL  437 (484)
T ss_pred             --CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-------CCCCc---hHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence              3444556677888888888888888888776654       23333   34566788888887777777666555443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.74  E-value=2.9e-05  Score=74.41  Aligned_cols=208  Identities=13%  Similarity=0.172  Sum_probs=125.0

Q ss_pred             HHHHH-HHHHHcCChhHHHHHHHHH------HHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446          121 LFNEV-KSMIMMGNKNDAIDLLQAN------YEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (510)
Q Consensus       121 l~~~~-~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (510)
                      +++.+ ..+-+..++++|+++|++.      +++.+-.+     +......-...|.-+...|+++.|+..|-.+..+.+
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf-----p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k  737 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF-----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK  737 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC-----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence            34433 5566778889999888754      44433222     333344445567777788888888887754432221


Q ss_pred             h----cC--------------CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010446          194 S----LK--------------DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL  255 (510)
Q Consensus       194 ~----~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  255 (510)
                      .    ++              .+.......|-.++.-|...|+|+.|.++|.++-.                ...-...|
T Consensus       738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------------~~dai~my  801 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL----------------FKDAIDMY  801 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch----------------hHHHHHHH
Confidence            1    00              01111112234566777778888888887766521                11224567


Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHHHcC-------
Q 010446          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF------SRILKIYTKVYG-------  322 (510)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~-------  322 (510)
                      .+.|++++|.++.++..         ........|..-+.-+-..|+|.+|+.+|      .+++.++.+..-       
T Consensus       802 ~k~~kw~da~kla~e~~---------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirl  872 (1636)
T KOG3616|consen  802 GKAGKWEDAFKLAEECH---------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRL  872 (1636)
T ss_pred             hccccHHHHHHHHHHhc---------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence            77788888776665543         23345566777777777788887777765      355665554421       


Q ss_pred             --CCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          323 --ENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       323 --~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                        ..|++ ...+...+|.-+...|+...|...|-++-+.
T Consensus       873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~  911 (1636)
T KOG3616|consen  873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF  911 (1636)
T ss_pred             HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence              11222 3456677888888999999998888776543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.74  E-value=1.1e-07  Score=68.02  Aligned_cols=84  Identities=20%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 010446          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (510)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (510)
                      ..|+++.|+.+++++++..       +..+ ....+..+|.+++..|++++|+.++++ ....       +......+.+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~-------~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~   64 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELD-------PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLL   64 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHH-------CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHC-------CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHH
Confidence            3689999999999999872       1122 566777899999999999999999988 3332       2234446677


Q ss_pred             HHHHHhhhcHHHHHHHHHHH
Q 010446          210 GSMYSTLENYEKSMLVYQRV  229 (510)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~a  229 (510)
                      |.++..+|++++|+..++++
T Consensus        65 a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   65 ARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhcC
Confidence            99999999999999999875

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.72  E-value=7.1e-07  Score=67.36  Aligned_cols=102  Identities=28%  Similarity=0.305  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010446          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (510)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (510)
                      .+.+.+|.++...|+.++|+.+|++++..     |...+....++..+|..+...|++++|+..+++++..       .|
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-------~p   69 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-------FP   69 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CC
Confidence            35678999999999999999999999884     4455666789999999999999999999999998865       24


Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (510)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (510)
                      +++....+...++.++...|+.++|+..+-.++.
T Consensus        70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4333344556788999999999999999877654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.71  E-value=4.9e-07  Score=68.23  Aligned_cols=102  Identities=26%  Similarity=0.330  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      .+.+.+|.++-..|+.++|+.+|++++..     +.+.+....++..+|..+...|++++|+..+++++...     +++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence            35788999999999999999999999885     44455667889999999999999999999999988632     233


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (510)
                      +........++.++...|++++|+..+-.++.
T Consensus        72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   72 ELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33455566688899999999999999877664

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.70  E-value=0.0001  Score=70.77  Aligned_cols=208  Identities=19%  Similarity=0.190  Sum_probs=125.9

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHH------HHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHR------VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      .|-.-|.+|.+..++++|+++|++      ++++.+-..   +...+..-...|.-+...|+++.|+..|-++-...+..
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai  739 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI  739 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence            455567777788888888888765      444443322   22333344456777888899998888876543322111


Q ss_pred             ---cC-CCCh-------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 010446          321 ---YG-ENDG-------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL  383 (510)
Q Consensus       321 ---~~-~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~  383 (510)
                         .+ ...+             .....|-.++.-|...|+|+-|.++|.++-..                  ..-...|
T Consensus       740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~------------------~dai~my  801 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF------------------KDAIDMY  801 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh------------------HHHHHHH
Confidence               00 0011             11122445677777888888888877664322                  2234567


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH------HHHHHHHHHHh--------
Q 010446          384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL------RICLDIMTKTV--------  449 (510)
Q Consensus       384 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~--------  449 (510)
                      .+.|++..|..+-++..       +  ...+...|...+.-..+.|+|.+|..+|      .+++.++.+..        
T Consensus       802 ~k~~kw~da~kla~e~~-------~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirl  872 (1636)
T KOG3616|consen  802 GKAGKWEDAFKLAEECH-------G--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRL  872 (1636)
T ss_pred             hccccHHHHHHHHHHhc-------C--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence            77788887777655542       1  2344556666777777777777777665      34555554432        


Q ss_pred             -CCCChh-hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010446          450 -GPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (510)
Q Consensus       450 -~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al  484 (510)
                       +..|++ ...+...+|.-|...|+..+|...|-++-
T Consensus       873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~  909 (1636)
T KOG3616|consen  873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG  909 (1636)
T ss_pred             HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence             122333 34566788999999999999888776653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.69  E-value=1.9e-07  Score=66.70  Aligned_cols=83  Identities=18%  Similarity=0.287  Sum_probs=65.7

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 010446          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (510)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (510)
                      +|+++.|+.+++++++...     .++ ....+..+|.+|+..|++++|+.++++ .+.        .+........+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence            6899999999999998742     122 455677799999999999999999998 443        2234566677899


Q ss_pred             HHHHcCChHHHHHHHHHH
Q 010446          296 LFIKEGKAVDAESVFSRI  313 (510)
Q Consensus       296 ~~~~~g~~~~A~~~~~~a  313 (510)
                      ++..+|++++|++.++++
T Consensus        67 ~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   67 CLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhcC
Confidence            999999999999999875

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.69  E-value=3.9e-07  Score=84.52  Aligned_cols=113  Identities=11%  Similarity=-0.009  Sum_probs=92.4

Q ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010446          165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL  244 (510)
Q Consensus       165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (510)
                      +...|..++..|+|++|+..|++++...       |....++..+|.++...|++++|+..+++++.+.        |..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~~   69 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLD-------PNNAELYADRAQANIKLGNFTEAVADANKAIELD--------PSL   69 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCC
Confidence            4556788889999999999999999764       3345568999999999999999999999999873        445


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE  300 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  300 (510)
                      ..+++.+|.++...|++++|+..|++++++        .|........++.+....
T Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         70 AKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence            678999999999999999999999999987        344455555566554443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.68  E-value=0.00011  Score=72.53  Aligned_cols=265  Identities=11%  Similarity=0.014  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC--CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK--DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (510)
                      +......++......++.+|..++.++.......+  ......+...-..|.+....|++++|+++.+.++......   
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---  491 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---  491 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---
Confidence            34455667777889999999999988776654311  1122334444456777888999999999999998875332   


Q ss_pred             CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (510)
                      .....+.++..+|.+..-.|++++|..+..++.+..++..  .......+....+.++..+|+...|.  -.++......
T Consensus       492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~  567 (894)
T COG2909         492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIRE  567 (894)
T ss_pred             cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHH
Confidence            2234567788999999999999999999999999887753  22334455666788899999433322  2222222222


Q ss_pred             HcCCCChH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010446          320 VYGENDGR---VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  396 (510)
Q Consensus       320 ~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  396 (510)
                      ......+.   ...+...+...+.   +++.+..-....++.....   .+.+......+..|+.+....|++++|...+
T Consensus       568 q~l~q~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~~~~---~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l  641 (894)
T COG2909         568 QHLEQKPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVGSVY---TPQPLLSRLALSMLAELEFLRGDLDKALAQL  641 (894)
T ss_pred             HHhhhcccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhhhhc---ccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            21122222   2233333333333   3777777777777665432   3333333334468999999999999999999


Q ss_pred             HHHHHHHHHhhCCCChhH-HHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          397 EECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       397 ~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                      .+.........  .+.+. +.++.........+|+.++|.....+.
T Consensus       642 ~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         642 DELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            98887765431  23332 233333344556788998888877763

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=4.4e-06  Score=76.33  Aligned_cols=133  Identities=14%  Similarity=0.045  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (510)
                      ....+.+..+..++..|++++|+..++..+...       |.....+...+.++...++..+|.+.+++++...      
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~------  370 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-------PDNPYYLELAGDILLEANKAKEAIERLKKALALD------  370 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Confidence            334455666666666666666666666644332       2222234455666666666666666666666542      


Q ss_pred             CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  315 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  315 (510)
                        |.......++|..|...|++.+|+..++..+.-        .|+....|..||..|..+|+..+|...+.+...
T Consensus       371 --P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         371 --PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             --CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence              222344556666666666666666666655442        445555666666666666666665555544443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.65  E-value=1.9e-07  Score=63.94  Aligned_cols=64  Identities=20%  Similarity=0.276  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHH
Q 010446          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-RDKEAEKLVLEALYI  486 (510)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  486 (510)
                      +.++..+|.++...|++++|+.+|++++++        +|....++.++|.++..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            467889999999999999999999999996        5677789999999999999 799999999999986

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.65  E-value=2e-07  Score=63.81  Aligned_cols=64  Identities=19%  Similarity=0.378  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKI  316 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  316 (510)
                      +..+..+|.++...|++++|+.+|++++++        +|....++.++|.++..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567899999999999999999999999998        5777899999999999999 799999999999985

...

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.63  E-value=2.8e-05  Score=79.64  Aligned_cols=249  Identities=15%  Similarity=0.156  Sum_probs=179.9

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      |.-+..|..........++.++|.+..++|+....-.-+........++.|+-..   -|.-+.-.+.|++|.+++.   
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhcc---
Confidence            4445556666677888999999999999999865211111222344455555444   4566677788888887742   


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                            ....+..|..+|...+++++|.++++..++-+.        .....|...+..++.+.+-+.|...+.+|+...
T Consensus      1529 ------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1529 ------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred             ------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence                  246778899999999999999999999988653        345678889999999999999999999999985


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (510)
                      ++     ..|   .......|.+-++.|+.+.+..+|+..+..        +|.....|..+...-.+.|+.+.+..+|+
T Consensus      1595 Pk-----~eH---v~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1595 PK-----QEH---VEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred             ch-----hhh---HHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence            43     123   234467899999999999999999988763        56666788888888899999999999999


Q ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHh
Q 010446          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIA  490 (510)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~  490 (510)
                      +++.+.      -.+..+..++..-.-|.+ .|+-+.....=.+|.+..++.
T Consensus      1659 Rvi~l~------l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1659 RVIELK------LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred             HHHhcC------CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence            999852      233344444444444444 366555555556666665543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.63  E-value=0.00087  Score=67.47  Aligned_cols=367  Identities=14%  Similarity=0.068  Sum_probs=221.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH-HhcCCCChhHHHHHHHHHH--HHHhhCChHHHHHHHHHH
Q 010446          112 NDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQ-INAGNKGIEEVAILDIIAL--GYVYIGDLKFVQSLLDMM  188 (510)
Q Consensus       112 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~  188 (510)
                      .++...+-..+-.+......+..+++++..+++....... .+... .++...++..+-.  ++...|+++.+...+++.
T Consensus       173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3333333334444555567788899999999998776654 22222 4444445554433  456788888888877665


Q ss_pred             HHhhhhcCCCc-------------------------h----------HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          189 SGIVDSLKDDE-------------------------P----------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       189 ~~~~~~~~~~~-------------------------~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      ....+......                         +          ..+-++..-|......|..++|.++++++++..
T Consensus       252 q~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i  331 (608)
T PF10345_consen  252 QQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQI  331 (608)
T ss_pred             HHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Confidence            55443321110                         1          112234444666777788889999999999998


Q ss_pred             HHhcC---CCCh---------------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHH
Q 010446          234 ESRYG---KTSI---------------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT-ESADLVLPLFSLG  294 (510)
Q Consensus       234 ~~~~~---~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la  294 (510)
                      ++...   ...+               ....++...+.+....|++.+|......+.....+...+ ........++..|
T Consensus       332 ~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~g  411 (608)
T PF10345_consen  332 EKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLG  411 (608)
T ss_pred             HHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHH
Confidence            88651   1110               123345566777888999999999999888776553321 1223456678889


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446          295 SLFIKEGKAVDAESVFSRILKIYTKVYG---ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (510)
Q Consensus       295 ~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (510)
                      ..+...|+.+.|+.+|.+..-.......   ....-...+..|+..++...+.-.....-+.+.++..+.... ......
T Consensus       412 l~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~-~~~~~~  490 (608)
T PF10345_consen  412 LYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCS-NSPNSY  490 (608)
T ss_pred             HHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcccc-CCccHH
Confidence            9999999999999999855533222212   222234556677788887766544422222233322211100 111112


Q ss_pred             HHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHH-HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446          372 MENMRIDLAELLH--IVGRGQEGRELLEECLLIT-EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (510)
Q Consensus       372 ~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (510)
                      ....+..+-.++.  ..-...++...+.++++.. ...  .+......++..++..++ .|+..+.......+....++.
T Consensus       491 ~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~--~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~  567 (608)
T PF10345_consen  491 NRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKL--GNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS  567 (608)
T ss_pred             HHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence            2222222222222  2234458999999999988 444  234455566777888777 888888888888888877664


Q ss_pred             hCCCChhhHH---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          449 VGPDDQSISF---PMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       449 ~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                        ++......   +-..++..+...|+.++|.....+.-.
T Consensus       568 --~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  568 --SDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             --hhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence              22222222   234567778899999999998877654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=1.7e-05  Score=65.14  Aligned_cols=198  Identities=14%  Similarity=0.120  Sum_probs=124.8

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 010446          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (510)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (510)
                      +.-.+++++|.++|.++-.++                      ....++..|-..|.++-+...+..  +..+.+.+|..
T Consensus        24 fgg~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~--skhDaat~Yve   79 (288)
T KOG1586|consen   24 FGGSNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVE   79 (288)
T ss_pred             cCCCcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHH
Confidence            334458888888888775543                      334445555555666655554443  22334556666


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446          293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (510)
Q Consensus       293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (510)
                      .+.+|.. ++.++|...++++++++....  .-...+.-+..+|.+|... .++++|+.+|+.+-+.+...    .....
T Consensus        80 A~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e----es~ss  152 (288)
T KOG1586|consen   80 AANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE----ESVSS  152 (288)
T ss_pred             HHHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch----hhhhh
Confidence            6666654 489999999999999987652  1223445566788888775 89999999999999987642    22333


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                      ...++...|..-...++|.+|+..|++.....-..  +- ....-..+..-|.|+.-..+.-.+...+++-.+
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n--~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~  223 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN--NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE  223 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence            34556667777788899999999999865532110  00 011112334456666666776666655555544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.60  E-value=4.7e-06  Score=85.04  Aligned_cols=210  Identities=15%  Similarity=0.089  Sum_probs=159.6

Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      +|..+..|...-..+...++.++|.+..++|+....-..+........++.||-.   .-|.-+.-.+.|++|.+.+.. 
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~eesl~kVFeRAcqycd~- 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEESLKKVFERACQYCDA- 1529 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHHHHHHHHHHHHHhcch-
Confidence            4555666777777888999999999999999976411111111223334444443   445667778888888876422 


Q ss_pred             cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (510)
                              ...+..|..+|...+++++|.++++..++.+.+.          ..+|..+|..++++++-+.|..++.+|+
T Consensus      1530 --------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1530 --------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             --------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                    2567889999999999999999999999886532          4577889999999999999999999999


Q ss_pred             HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHH
Q 010446          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (510)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (510)
                      ....+.      .........|.+-++.|+.+.+..+|+..+.        .+|...+.|..+...-.+.|+.+.+..+|
T Consensus      1592 ~~lPk~------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1592 KSLPKQ------EHVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred             hhcchh------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence            876442      2345556778899999999999999998887        36777778888888888889988888888


Q ss_pred             HHHHHH
Q 010446          481 LEALYI  486 (510)
Q Consensus       481 ~~al~~  486 (510)
                      ++++.+
T Consensus      1658 eRvi~l 1663 (1710)
T KOG1070|consen 1658 ERVIEL 1663 (1710)
T ss_pred             HHHHhc
Confidence            888764

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=5.6e-05  Score=69.06  Aligned_cols=304  Identities=14%  Similarity=0.066  Sum_probs=183.0

Q ss_pred             hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHH--HHHHHHHHHHhhhcHHHHHHHHHHHHH-HHHHh
Q 010446          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA--ILLHMGSMYSTLENYEKSMLVYQRVIN-VLESR  236 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~  236 (510)
                      +.+..+...+..++..|++.+|.+.+...-.....-+...|....  .++++|.+++..|.|.-+..+|.+|++ ...+.
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            445567778888999999999999886543222221223344433  357999999999999999999999996 33332


Q ss_pred             cCC---C------ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC-----
Q 010446          237 YGK---T------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-----  302 (510)
Q Consensus       237 ~~~---~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----  302 (510)
                      -..   .      .......+++.|..|...|++-.|.++|.++...+...        ...|..++.++....+     
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcCima~~~~l~e  389 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECCIMALQKGLLE  389 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHhhhhhhh
Confidence            111   0      11346778999999999999999999999998876442        2444555554432100     


Q ss_pred             --------------------------------------------hHHHHHHHHHHHHHHHHH------------------
Q 010446          303 --------------------------------------------AVDAESVFSRILKIYTKV------------------  320 (510)
Q Consensus       303 --------------------------------------------~~~A~~~~~~al~~~~~~------------------  320 (510)
                                                                  .+=|.-+++.++-+..+.                  
T Consensus       390 e~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~  469 (696)
T KOG2471|consen  390 EGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGS  469 (696)
T ss_pred             hccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCC
Confidence                                                        122333344443332000                  


Q ss_pred             -----------------------cCCCChH--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446          321 -----------------------YGENDGR--------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (510)
Q Consensus       321 -----------------------~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (510)
                                             ..+..|.        ....+.+.+.+-...|+.-.|+..-.+.++..+-.    ...
T Consensus       470 ~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS----~~~  545 (696)
T KOG2471|consen  470 SSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLS----KIY  545 (696)
T ss_pred             CCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhh----hHH
Confidence                                   0001111        12345566777788999999999988888764321    111


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHH------H--HHHHhhCC-------------C-------Chh--HHHHHH
Q 010446          370 SIMENMRIDLAELLHIVGRGQEGRELLEECL------L--ITEKYKGK-------------E-------HPS--FVTHLL  419 (510)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~--~~~~~~~~-------------~-------~~~--~~~~~~  419 (510)
                      .  .-.+..-|+.+....+..+|...+.--+      .  .....++.             .       .++  ......
T Consensus       546 k--fLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~  623 (696)
T KOG2471|consen  546 K--FLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFA  623 (696)
T ss_pred             H--HHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHH
Confidence            1  1122234555566778888877664311      0  00000000             0       111  224578


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                      +||..+.-+|++++|..++..+..+..+.    .+..+.++  ---+-..+|+...|...+++.
T Consensus       624 nLa~a~alq~~~dqAk~ll~~aatl~hs~----v~~~A~~l--avyidL~~G~~q~al~~lk~~  681 (696)
T KOG2471|consen  624 NLAAALALQGHHDQAKSLLTHAATLLHSL----VNVQATVL--AVYIDLMLGRSQDALARLKQC  681 (696)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhhcc----ccHHHHHH--HHHHHHhcCCCcchHHHHHhc
Confidence            99999999999999999999998875422    11111111  111234789999998877764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.9e-06  Score=76.99  Aligned_cols=139  Identities=19%  Similarity=0.218  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      ....-|+.|++.|+|..|...|++++.........+..       ....++.|++.++..+++|.+|+....+++++   
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---  286 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---  286 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence            35678999999999999999999999887643222211       24567899999999999999999999999997   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHH
Q 010446          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKAL  356 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al  356 (510)
                           .+....+++.-|.++..+|+++.|+..|++++++.        |..-.+...+..+-.+..++. ...+.|.+++
T Consensus       287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 56678999999999999999999999999999862        333344445555544444333 3356666666


Q ss_pred             HHH
Q 010446          357 RVI  359 (510)
Q Consensus       357 ~~~  359 (510)
                      ...
T Consensus       354 ~k~  356 (397)
T KOG0543|consen  354 AKL  356 (397)
T ss_pred             hcc
Confidence            553

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.59  E-value=2.7e-06  Score=74.53  Aligned_cols=103  Identities=14%  Similarity=0.073  Sum_probs=88.5

Q ss_pred             HHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          120 ELFNEVKSM-IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       120 ~l~~~~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ..+..+..+ ...|+|++|+..|++.+..       .++.+..+.+++.+|.+|+..|++++|+..|+.++...    ++
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y----P~  212 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK-------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY----PK  212 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CC
Confidence            356666655 6679999999999999987       44466667899999999999999999999999998775    56


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      ++....+++.+|.++...|++++|...|+++++.+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            67788889999999999999999999999998764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.59  E-value=4.6e-05  Score=64.42  Aligned_cols=172  Identities=16%  Similarity=0.159  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ...+++.+...++.|++++|+..|+.....       .+..|....+...++.+++..++++.|+...++.+.+.    +
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----P  102 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----P  102 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----C
Confidence            345889999999999999999999987754       55567778899999999999999999999999998886    6


Q ss_pred             CchHHHHHHHHHHHHHHhh-----hcH---HHHHHHHHHHHHHHHHhcCCCCh--------------hHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTL-----ENY---EKSMLVYQRVINVLESRYGKTSI--------------LLVTSLLGMAKVL  255 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~-----g~~---~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~la~~~  255 (510)
                      .+|....+++..|.+++..     .+.   .+|..-+++.+..+     ++++              .++.--..+|..|
T Consensus       103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY  177 (254)
T COG4105         103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYY  177 (254)
T ss_pred             CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888876643     233   34444444444432     2222              1222334578899


Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 010446          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF  310 (510)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  310 (510)
                      .+.|.+..|+..++.+++-..     +.+....++..+...|..+|-.++|.+.-
T Consensus       178 ~kr~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         178 LKRGAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             HHhcChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence            999999999999999988743     34556678888999999999999887653

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.58  E-value=3.2e-06  Score=74.10  Aligned_cols=104  Identities=19%  Similarity=0.274  Sum_probs=88.1

Q ss_pred             HHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          246 TSLLGMAKVL-GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       246 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      ...+..|..+ ...|+|++|+..|++.++.+     ++.+....+++.+|.+|...|++++|+..|+++++.+     ++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            3445555554 56799999999999999873     3445557889999999999999999999999999864     56


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                      ++....++..+|.++...|++++|...|+++++.+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            78888999999999999999999999999998874

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.57  E-value=0.00031  Score=62.94  Aligned_cols=254  Identities=19%  Similarity=0.155  Sum_probs=146.4

Q ss_pred             HhhCChHHHHHHHHHHHHhhh-hcCCCchHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHH-h-cCCCCh----hH
Q 010446          173 VYIGDLKFVQSLLDMMSGIVD-SLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLES-R-YGKTSI----LL  244 (510)
Q Consensus       173 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-~-~~~~~~----~~  244 (510)
                      ...|+++.|..++.++..... ..+.....++..+++.|......+ +++.|..+++++.++... . ....++    ..
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            468999999999999887763 222333456788999999999999 999999999999999755 1 111222    45


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      ..++..++.+|...+.++...+ ..++++..+...+ +++   ..+..--.+....++.+++.+.+.+++....-     
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~---~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-----  153 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKP---EVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-----  153 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCc---HHHHHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence            6788999999999998865544 4445555444322 222   22222223333378889888888888764210     


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--ChHHH--HHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEG--RELLEECL  400 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~al  400 (510)
                      ..............+.. .....|...+...+...-.   .+++. .....  -+..++...+  +....  ++.....+
T Consensus       154 ~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~---~~~~~-~~e~~--vl~~~~~~~~~~~~~~~~~i~~l~~~~  226 (278)
T PF08631_consen  154 SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFK---SSEDQ-WLEKL--VLTRVLLTTQSKDLSSSEKIESLEELL  226 (278)
T ss_pred             ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhC---CChhH-HHHHH--HHHHHHHHcCCccccchhHHHHHHHHH
Confidence            11111111111111222 3345666666666554322   11221 22222  1222333222  22222  33444444


Q ss_pred             HHHHHhhC-CCChhHH----HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          401 LITEKYKG-KEHPSFV----THLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       401 ~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                      ....+..+ +-.+...    ..+.+.|...++.++|++|..+|+-++.
T Consensus       227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            43332222 2222222    3455678889999999999999998764

It is also involved in sporulation [].

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.56  E-value=2.9e-05  Score=65.39  Aligned_cols=243  Identities=14%  Similarity=0.115  Sum_probs=164.1

Q ss_pred             hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010446          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (510)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (510)
                      ..+.++|+..|++++++-   +.....-..++-.+..+++.+|+|++-...|.+.+...+.....+....  +.+.+-..
T Consensus        40 e~~p~~Al~sF~kVlelE---gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDy  114 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELE---GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDY  114 (440)
T ss_pred             ccCHHHHHHHHHHHHhcc---cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHH
Confidence            347889999999998876   4444555566888899999999999999999999988776544443321  22222222


Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh----HHHH
Q 010446          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGM  330 (510)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~  330 (510)
                      -....+.+--.++|+..++..+...  +......+-..||.+|+..|+|.+-.+.+++.-..++...|.++.    ....
T Consensus       115 iStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE  192 (440)
T KOG1464|consen  115 ISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE  192 (440)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence            2334455555667777776665543  223334455679999999999999888888887777665454432    2455


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (510)
                      .|..-..+|..+.+-.+-..+|++++.+-..+    |.+..+..+...=|..+.+.|++++|-.-|-+|..-+.+...+ 
T Consensus       193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-  267 (440)
T KOG1464|consen  193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-  267 (440)
T ss_pred             hHhhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-
Confidence            56556678888888888888999999886543    4454555555555677888999999988887777766655322 


Q ss_pred             ChhHHHHHHHHHHHHHhcc
Q 010446          411 HPSFVTHLLNLAASYSRSK  429 (510)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g  429 (510)
                      ......-|..||..+.+.|
T Consensus       268 RRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  268 RRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             chhHHHHHHHHHHHHHHcC
Confidence            2223334555666666554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=0.00016  Score=61.08  Aligned_cols=252  Identities=16%  Similarity=0.093  Sum_probs=157.6

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      -++.++-.|.|..++...++.-.           .+........+...|..+|.+...+.-...        +.. +...
T Consensus        14 ~iRn~fY~Gnyq~~ine~~~~~~-----------~~~~~e~d~y~~raylAlg~~~~~~~eI~~--------~~~-~~lq   73 (299)
T KOG3081|consen   14 NIRNYFYLGNYQQCINEAEKFSS-----------SKTDVELDVYMYRAYLALGQYQIVISEIKE--------GKA-TPLQ   73 (299)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhcc-----------ccchhHHHHHHHHHHHHccccccccccccc--------ccC-ChHH
Confidence            45666778888888775554321           224556667788888888887665443322        122 2222


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                      . ...++.+...-++.++-+.-..+-+..      ............-|.+|..-|++++|++.......+         
T Consensus        74 A-vr~~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l---------  137 (299)
T KOG3081|consen   74 A-VRLLAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL---------  137 (299)
T ss_pred             H-HHHHHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH---------
Confidence            2 345555555555544444333332221      112222334555688899999999999888763322         


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI  359 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  359 (510)
                          .+...-..++.++.+.+-|...++++.++.+.          .++..||..+..    .++..+|.-+|++.-+..
T Consensus       138 ----E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~  203 (299)
T KOG3081|consen  138 ----EAAALNVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT  203 (299)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc
Confidence                22223346778888899999988888876322          234445544433    345777777777654321


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (510)
                            ++.    ..+++.++.+...+|++++|...++.++.-        .+....++.++..+-...|...++.+-+-
T Consensus       204 ------~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  204 ------PPT----PLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             ------CCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence                  122    345688999999999999999999999873        34446777888888888898887776554


Q ss_pred             HHHH
Q 010446          440 ICLD  443 (510)
Q Consensus       440 ~al~  443 (510)
                      .-+.
T Consensus       266 ~QLk  269 (299)
T KOG3081|consen  266 SQLK  269 (299)
T ss_pred             HHHH
Confidence            4443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.53  E-value=1.4e-06  Score=64.14  Aligned_cols=96  Identities=26%  Similarity=0.343  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCCh
Q 010446          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (510)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (510)
                      ++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|..++++++..        .|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence            35789999999999999999999988752        233367888999999999999999999999874        23


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      ....++..+|.++...|++++|..++.++++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            33367889999999999999999999988764

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.52  E-value=1.6e-05  Score=58.79  Aligned_cols=99  Identities=14%  Similarity=0.129  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +-..+..+...|+.+.|++.|.+++.+          .|..+.+|++.+..+..+|+.++|+.-+++++++.   ++...
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l----------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~tr  112 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCL----------APERASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQTR  112 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHh----------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---Cccch
Confidence            555778889999999999999999998          88889999999999999999999999999999987   55556


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      ....++...|.+|..+|+.+.|..-|+.+-++
T Consensus       113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            66777889999999999999999999998776

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.52  E-value=1.2e-06  Score=64.51  Aligned_cols=96  Identities=26%  Similarity=0.390  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (510)
                      ++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|..++++++...        +
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence            4678899999999999999999999876        23334778899999999999999999999998752        2


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ....++..+|.++...|++++|..++.+++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            23367888999999999999999999988764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=5.8e-06  Score=74.02  Aligned_cols=138  Identities=12%  Similarity=0.143  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch--------HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP--------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      +.....-|..|++.|+|..|...|++++.........++        ....++.+++.++.++++|.+|+....+++.+ 
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-  286 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-  286 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence            334566788999999999999999998887753222221        13456889999999999999999999999986 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH-HHHHHH
Q 010446          234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA-ESVFSR  312 (510)
Q Consensus       234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~  312 (510)
                             .+....+++..|.++...|+|+.|+..|++++++        .|..-.+...+..+-....++.+. .+.|..
T Consensus       287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3556789999999999999999999999999998        455556666666665554444433 455555


Q ss_pred             HHH
Q 010446          313 ILK  315 (510)
Q Consensus       313 al~  315 (510)
                      +..
T Consensus       352 mF~  354 (397)
T KOG0543|consen  352 MFA  354 (397)
T ss_pred             Hhh
Confidence            544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.47  E-value=0.00075  Score=60.25  Aligned_cols=262  Identities=13%  Similarity=0.077  Sum_probs=176.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEV-AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (510)
                      .+....-.|+++.|.+-|+.++.           +|+.- .-+..|-.--...|+.+.|..+-+.+....       |..
T Consensus       126 eAQaal~eG~~~~Ar~kfeAMl~-----------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-------p~l  187 (531)
T COG3898         126 EAQAALLEGDYEDARKKFEAMLD-----------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-------PQL  187 (531)
T ss_pred             HHHHHHhcCchHHHHHHHHHHhc-----------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-------cCC
Confidence            34556788999999999999875           33322 122333333456899999999999887765       444


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL--VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ..+....-...+..|+++.|+++.+.......-  +++..+.  +..+..-+.... ..+...|.....++.++      
T Consensus       188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi--e~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL------  258 (531)
T COG3898         188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVI--EKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL------  258 (531)
T ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc------
Confidence            444455555667889999999999877654321  2222222  222222222222 34578888888888876      


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                        .|+.+..-..-+..++..|+..++-.+++.+.+.      ..||.+...       |.....-+.++.-++++-.+..
T Consensus       259 --~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~l-------Y~~ar~gdta~dRlkRa~~L~s  323 (531)
T COG3898         259 --APDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALL-------YVRARSGDTALDRLKRAKKLES  323 (531)
T ss_pred             --CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHH-------HHHhcCCCcHHHHHHHHHHHHh
Confidence              4566667777889999999999999999988774      356665444       3333344456666777666533


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc-cCHHHHHHHHH
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLR  439 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~  439 (510)
                      -    .+++   .......+..-...|++..|..-.+.+..+.        | ...++..|+.+-... |+-.++..++-
T Consensus       324 l----k~nn---aes~~~va~aAlda~e~~~ARa~Aeaa~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlA  387 (531)
T COG3898         324 L----KPNN---AESSLAVAEAALDAGEFSAARAKAEAAAREA--------P-RESAYLLLADIEEAETGDQGKVRQWLA  387 (531)
T ss_pred             c----Cccc---hHHHHHHHHHHHhccchHHHHHHHHHHhhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHH
Confidence            2    2333   3344668888899999999988877776543        1 235677788887765 99999999999


Q ss_pred             HHHH
Q 010446          440 ICLD  443 (510)
Q Consensus       440 ~al~  443 (510)
                      +++.
T Consensus       388 qav~  391 (531)
T COG3898         388 QAVK  391 (531)
T ss_pred             HHhc
Confidence            9987

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.47  E-value=0.00089  Score=59.77  Aligned_cols=298  Identities=13%  Similarity=0.015  Sum_probs=197.9

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      .+......|+-..|..+..++-.++.        ....+-++..-+..-...|+++.|.+-|+.++.-        |+..
T Consensus        90 tGliAagAGda~lARkmt~~~~~lls--------sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PEtR  153 (531)
T COG3898          90 TGLIAAGAGDASLARKMTARASKLLS--------SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--------PETR  153 (531)
T ss_pred             hhhhhhccCchHHHHHHHHHHHhhhh--------ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--------hHHH
Confidence            34445667888888888887765432        2222334455566777899999999999987632        3322


Q ss_pred             -HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          204 -AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       204 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                       ..+..|-.--...|..+.|..|-+++....        |....+....-...+..|+++.|+++.+.......  .+++
T Consensus       154 llGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~  223 (531)
T COG3898         154 LLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKD  223 (531)
T ss_pred             HHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchh
Confidence             112333333456799999999999987754        33344444555667789999999999987765421  1111


Q ss_pred             Ccc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          283 SAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       283 ~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                      ..+  .+..+..-+.... ..+...|...-.++.++        .|+...+-..-+..++..|+..++-.+++.+.+.  
T Consensus       224 ~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--  292 (531)
T COG3898         224 VAERSRAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--  292 (531)
T ss_pred             hHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--
Confidence            111  1222222232222 34577788887777775        3455555566788899999999999999998875  


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (510)
                            ..||.       ++.+|....--+.++.-++++-.+..     -.++........+..-...|++..|..--+.
T Consensus       293 ------ePHP~-------ia~lY~~ar~gdta~dRlkRa~~L~s-----lk~nnaes~~~va~aAlda~e~~~ARa~Aea  354 (531)
T COG3898         293 ------EPHPD-------IALLYVRARSGDTALDRLKRAKKLES-----LKPNNAESSLAVAEAALDAGEFSAARAKAEA  354 (531)
T ss_pred             ------CCChH-------HHHHHHHhcCCCcHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence                  23444       34455555445566667777665432     3456677788889999999999999988877


Q ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 010446          441 CLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALY  485 (510)
Q Consensus       441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  485 (510)
                      +..+.        | ...++..|+.+-... |+-.+...++.+++.
T Consensus       355 a~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         355 AAREA--------P-RESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HhhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            76631        2 235677888888876 999999999998876

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=0.0001  Score=60.77  Aligned_cols=193  Identities=10%  Similarity=0.103  Sum_probs=122.1

Q ss_pred             hhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010446          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK  253 (510)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  253 (510)
                      ..+.+++|.+++.++.                     +.|....+++.|=..|.++-+...+..  +..+.+.+|...+.
T Consensus        26 g~~k~eeAadl~~~Aa---------------------n~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~   82 (288)
T KOG1586|consen   26 GSNKYEEAAELYERAA---------------------NMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAAN   82 (288)
T ss_pred             CCcchHHHHHHHHHHH---------------------HHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHH
Confidence            3446677766666543                     344444555666666666666655542  22344566666666


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 010446          254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (510)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (510)
                      +|.. +++.+|..+++++++++..++  .-...+.-+..+|.+|... .++++|+.+|+++-+.+..-  ......-.++
T Consensus        83 cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~  157 (288)
T KOG1586|consen   83 CYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCL  157 (288)
T ss_pred             Hhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHH
Confidence            6655 499999999999999987654  1222344566788888765 89999999999999987532  1112233456


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM----ENMRIDLAELLHIVGRGQEGRELLEECLL  401 (510)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (510)
                      ...+..-...++|.+|+..|++.....-       +++..    -..+..-|.++.-..+.-.+...+++-.+
T Consensus       158 lKvA~yaa~leqY~~Ai~iyeqva~~s~-------~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~  223 (288)
T KOG1586|consen  158 LKVAQYAAQLEQYSKAIDIYEQVARSSL-------DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE  223 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence            6677777888999999999998876532       22221    11233445666665666555555444333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.45  E-value=0.00013  Score=61.72  Aligned_cols=171  Identities=16%  Similarity=0.124  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010446          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (510)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (510)
                      +..+++-|....+.|++++|.+.|+.....     -+..|..-.+...++..+.+.+++++|+...++-+..       .
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-------y  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-------Y  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-------C
Confidence            566788888899999999999999987753     2455666788999999999999999999999999888       4


Q ss_pred             CCChHHHHHHHHHHHHHHHc-----CChH---HHHHHHHHHHHHHHHhhCCCChhH--------------HHHHHHHHHH
Q 010446          367 LDDSIMENMRIDLAELLHIV-----GRGQ---EGRELLEECLLITEKYKGKEHPSF--------------VTHLLNLAAS  424 (510)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~-----g~~~---~A~~~~~~al~~~~~~~~~~~~~~--------------~~~~~~la~~  424 (510)
                      |.++....+++..|.++...     .+..   +|+.-+++.+..+     |+.+..              +.--..+|..
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~Iary  176 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARY  176 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666777777776643     2223   3444444443322     222211              1122356899


Q ss_pred             HHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446          425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (510)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (510)
                      |.+.|.+..|+..++.+++-.     ++.+....++..+..+|..+|-.++|...
T Consensus       177 Y~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         177 YLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             HHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            999999999999999999854     34566678889999999999999998764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.43  E-value=1.8e-06  Score=58.18  Aligned_cols=59  Identities=25%  Similarity=0.361  Sum_probs=54.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      .+|..+...|++++|+..|+++++        .+|....++..+|.++..+|++++|+.+|+++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            578999999999999999999987        46888999999999999999999999999999987

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.42  E-value=1.5e-06  Score=58.53  Aligned_cols=60  Identities=25%  Similarity=0.230  Sum_probs=54.3

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      .+|..+...|++++|+..|++++.        .+|....++..+|.++..+|++++|+.+|++++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            578999999999999999999987        468889999999999999999999999999999754

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.40  E-value=2.1e-05  Score=58.27  Aligned_cols=101  Identities=15%  Similarity=0.172  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      ..+-.-|......|+.+.|++.|.+++.+        -|..+.+|++.+..+.-+|+.++|++-+++++++.    |+..
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~t  111 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQT  111 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccc
Confidence            34555677888999999999999999998        45668999999999999999999999999999985    4445


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      .....++...|.+|..+|+.+.|..-|+.+-++
T Consensus       112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            557788999999999999999999999998876

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.39  E-value=8.2e-05  Score=62.72  Aligned_cols=242  Identities=14%  Similarity=0.111  Sum_probs=161.7

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC-CCchHHHHHHHH
Q 010446          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK-DDEPLLDAILLH  208 (510)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~  208 (510)
                      ...++++|+.-|++++++      .+.....-..++..+..+++.+|+|++....|.+++...+... .+....  ..+.
T Consensus        39 ~e~~p~~Al~sF~kVlel------EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~  110 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLEL------EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINS  110 (440)
T ss_pred             cccCHHHHHHHHHHHHhc------ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHH
Confidence            344789999999999987      1333444556788889999999999999999998887654321 111111  1222


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC----c
Q 010446          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES----A  284 (510)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~  284 (510)
                      +-..-....+.+--..+|+..++..+..  .+......+...+|.+|+..|+|.+-.+.+++....++...|.++    .
T Consensus       111 IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt  188 (440)
T KOG1464|consen  111 ILDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT  188 (440)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence            2222233445555556676666655443  223334455668999999999999998888888777765554433    2


Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA-MCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (510)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (510)
                      .....|..-..+|..+.+-.+-..+|++++.+....   .||....+ .-.=|..+.+.|++++|-.-|-+|.+.+.+. 
T Consensus       189 QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs-  264 (440)
T KOG1464|consen  189 QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES-  264 (440)
T ss_pred             hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc-
Confidence            334555555678888888888888999999875443   35554333 2333567888999999999999988887764 


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcC
Q 010446          364 YMSLDDSIMENMRIDLAELLHIVG  387 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g  387 (510)
                        +........-|..+|..+.+.|
T Consensus       265 --GspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  265 --GSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             --CCcchhHHHHHHHHHHHHHHcC
Confidence              3333344445667788887765

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.39  E-value=4.5e-06  Score=71.11  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +++.+..++..|+|..|...|..-++.       .++.+..+.+++.||.+++.+|++++|...|..+.+-.    +++|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~----P~s~  212 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY----PKSP  212 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC----CCCC
Confidence            888999999999999999999998876       66688889999999999999999999999999888765    5567


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      ....+++.+|.+...+|+.++|...++++++.+
T Consensus       213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            777789999999999999999999999998875

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.38  E-value=0.00076  Score=65.10  Aligned_cols=173  Identities=17%  Similarity=0.087  Sum_probs=119.6

Q ss_pred             HcCChHHHHHHHHHHHHHHHHHcCCCChHH---HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446          299 KEGKAVDAESVFSRILKIYTKVYGENDGRV---GMAMCSLAHAKC----ANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (510)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (510)
                      -.|+-+.+++.+.++.+. .   +-..|-.   ...|+.......    .....+.|.+.+....+.+       |+.. 
T Consensus       200 F~gdR~~GL~~L~~~~~~-~---~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-------P~s~-  267 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKS-E---NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-------PNSA-  267 (468)
T ss_pred             cCCcHHHHHHHHHHHhcc-C---CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------CCcH-
Confidence            468888999988887651 1   1111211   112222222222    2345677777777777663       3332 


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Q 010446          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (510)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (510)
                        ..+...|+++...|+.++|++.+++++....+.    ......++..+|.++..+++|++|..++.+..+.       
T Consensus       268 --lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------  334 (468)
T PF10300_consen  268 --LFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------  334 (468)
T ss_pred             --HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------
Confidence              344778999999999999999999988533322    1233457889999999999999999999988872       


Q ss_pred             CChhhHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHHhcCCCCc
Q 010446          452 DDQSISFPMLHLGITLYHLNRD-------KEAEKLVLEALYIREIAFGKDSL  496 (510)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~  496 (510)
                      +....+.-.+..|.++...|+.       ++|.+++.++-.+..++.|...|
T Consensus       335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp  386 (468)
T PF10300_consen  335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP  386 (468)
T ss_pred             cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence            3344455557788999999999       89999999999998888885443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.37  E-value=0.0017  Score=58.31  Aligned_cols=253  Identities=17%  Similarity=0.140  Sum_probs=145.1

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHh-c-CCCCc----ch
Q 010446          214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN-R-GTESA----DL  286 (510)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~-~-~~~~~----~~  286 (510)
                      ..+|+++.|..++.++-..............+..+++.|......+ ++++|..+++++.++.... . ...++    ..
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            5689999999999999877642211222367889999999999999 9999999999999997551 1 11222    34


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010446          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (510)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (510)
                      ..++..++.+|...+.++...+ ..++++..+..++ +++.....   --.++.+.++.+++.+.+.+++....-     
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~L---~l~il~~~~~~~~~~~~L~~mi~~~~~-----  153 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFLL---KLEILLKSFDEEEYEEILMRMIRSVDH-----  153 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHHH---HHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence            5677889999999888764444 4445555554443 33333211   122333378899999999888876321     


Q ss_pred             CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHhcc--CHHHH--HHHHHHH
Q 010446          367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSK--NFVEA--ERLLRIC  441 (510)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g--~~~~A--~~~~~~a  441 (510)
                      ++. .+..+ .....-+.. .....|...+...+...-.    ..++ ..... .+..++...+  +....  ++-.+..
T Consensus       154 ~e~-~~~~~-l~~i~~l~~-~~~~~a~~~ld~~l~~r~~----~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~  225 (278)
T PF08631_consen  154 SES-NFDSI-LHHIKQLAE-KSPELAAFCLDYLLLNRFK----SSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEEL  225 (278)
T ss_pred             ccc-hHHHH-HHHHHHHHh-hCcHHHHHHHHHHHHHHhC----CChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHH
Confidence            111 11111 111211222 2335566666655542211    1121 22211 1222222222  22222  3334444


Q ss_pred             HHHHHHHhC-CCChhh----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010446          442 LDIMTKTVG-PDDQSI----SFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (510)
Q Consensus       442 l~~~~~~~~-~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al  484 (510)
                      ++...+..+ +-.+..    ...+.+.|...++.++|.+|..+|+-++
T Consensus       226 ~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  226 LSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            443333222 222222    2335677889999999999999999876

It is also involved in sporulation [].

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=0.0006  Score=57.66  Aligned_cols=246  Identities=17%  Similarity=0.124  Sum_probs=148.3

Q ss_pred             HHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010446          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (510)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (510)
                      -++..|+|..++...++....        +........+.+.|..+|++..-+.-...+          ..+ ...+...
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~--------~~~~e~d~y~~raylAlg~~~~~~~eI~~~----------~~~-~lqAvr~   77 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSS--------KTDVELDVYMYRAYLALGQYQIVISEIKEG----------KAT-PLQAVRL   77 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhccc--------cchhHHHHHHHHHHHHcccccccccccccc----------cCC-hHHHHHH
Confidence            345678888777666553321        112222455667777777766544322211          111 1233444


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (510)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (510)
                      ++.....-++.++-+.-..+-+..      ............-|.+|...|++++|++.......+             .
T Consensus        78 ~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E  138 (299)
T KOG3081|consen   78 LAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------------E  138 (299)
T ss_pred             HHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-------------H
Confidence            555554445544433333222221      111222234445578899999999999887763222             2


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHh
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKY  406 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  406 (510)
                      +...-..++.+..+++-|...++++.++.++            .++..||..+..    .+++.+|.-+|++.-+     
T Consensus       139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------------~tLtQLA~awv~la~ggek~qdAfyifeE~s~-----  201 (299)
T KOG3081|consen  139 AAALNVQILLKMHRFDLAEKELKKMQQIDED------------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-----  201 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchH------------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----
Confidence            2222345677888899999988888877432            133556666554    3456777777766432     


Q ss_pred             hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010446          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  482 (510)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  482 (510)
                         ..+.+...++.++.++..+|+|++|...++.++.-        .+....++.++-.+-...|...++..-+-.
T Consensus       202 ---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  202 ---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             ---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence               23445577889999999999999999999999982        344466778888888889988777654433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=4.4e-05  Score=62.14  Aligned_cols=203  Identities=16%  Similarity=0.091  Sum_probs=124.7

Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      ...+..++..|..|-..|-..-|.--+.+++.+        .|..+.+++.+|..+...|+++.|.+.|+..+++     
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-----  128 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----  128 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence            455677888888999999999999999999987        6778899999999999999999999999988875     


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH-HHHH
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL-EECL  400 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al  400 (510)
                         +|..-.+..|.|..+..-|++.-|.+-+.+-.+.       .+++|... .|..+.   ...-+..+|..-+ +++.
T Consensus       129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-------D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~  194 (297)
T COG4785         129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-------DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAE  194 (297)
T ss_pred             ---CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-------CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHH
Confidence               4555567788888888899999988776654443       34444432 211111   1223455555433 3332


Q ss_pred             HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHH
Q 010446          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (510)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (510)
                      ...+..     .....+-..+|       +..+ ...++++....+.. ..-.....++++.+|..+...|+..+|..+|
T Consensus       195 ~~d~e~-----WG~~iV~~yLg-------kiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf  260 (297)
T COG4785         195 KSDKEQ-----WGWNIVEFYLG-------KISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALF  260 (297)
T ss_pred             hccHhh-----hhHHHHHHHHh-------hccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            221111     11111111122       2111 12222222211100 0001223456778888888888888888888


Q ss_pred             HHHHH
Q 010446          481 LEALY  485 (510)
Q Consensus       481 ~~al~  485 (510)
                      +-++.
T Consensus       261 KLaia  265 (297)
T COG4785         261 KLAVA  265 (297)
T ss_pred             HHHHH
Confidence            77764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=0.00039  Score=56.81  Aligned_cols=205  Identities=14%  Similarity=0.140  Sum_probs=134.8

Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      .+...+..++..|..|-..|-..-|..-|.+++.+.        |..+.+++.+|..+...|+|+.|.+.|...+++   
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---  128 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---  128 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---
Confidence            345567778899999999999999999999999873        667888999999999999999999999999987   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HH
Q 010446          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK-AL  356 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al  356 (510)
                           +|..-.+..+.|..++.-|++.-|.+-+.+-.+-     .+.+|-.. .|..+   -...-++.+|..-+.+ +.
T Consensus       129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~-LWLYl---~E~k~dP~~A~tnL~qR~~  194 (297)
T COG4785         129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRS-LWLYL---NEQKLDPKQAKTNLKQRAE  194 (297)
T ss_pred             -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHH-HHHHH---HHhhCCHHHHHHHHHHHHH
Confidence                 5666677788888889999999998877655442     23334321 12111   1233466677655433 22


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010446          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (510)
                      ..         +.....   .++...|  .|+..+ ...++++.+-.+.. ..-......++..+|..|...|+.++|..
T Consensus       195 ~~---------d~e~WG---~~iV~~y--LgkiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~  258 (297)
T COG4785         195 KS---------DKEQWG---WNIVEFY--LGKISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATA  258 (297)
T ss_pred             hc---------cHhhhh---HHHHHHH--HhhccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            22         212111   1222222  233321 12333333222100 00012344688899999999999999999


Q ss_pred             HHHHHHH
Q 010446          437 LLRICLD  443 (510)
Q Consensus       437 ~~~~al~  443 (510)
                      +|+-++.
T Consensus       259 LfKLaia  265 (297)
T COG4785         259 LFKLAVA  265 (297)
T ss_pred             HHHHHHH
Confidence            9998876

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.33  E-value=4.4e-05  Score=74.04  Aligned_cols=135  Identities=15%  Similarity=0.107  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHhhCC---hHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhc--------HHHHHHHHHH
Q 010446          160 EEVAILDIIALGYVYIGD---LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN--------YEKSMLVYQR  228 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~  228 (510)
                      ..+.-++..|..+...++   ...|+.+|++++++.       |..+.++-.++.++.....        ...+....++
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-------PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            345555666777766554   778999999998875       5556566666666544322        2333333333


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH
Q 010446          229 VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAES  308 (510)
Q Consensus       229 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  308 (510)
                      ++.+      +..+....++..+|..+...|++++|...+++|+++        .+ ...+|..+|.++...|++++|++
T Consensus       410 a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~p-s~~a~~~lG~~~~~~G~~~eA~~  474 (517)
T PRK10153        410 IVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EM-SWLNYVLLGKVYELKGDNRLAAD  474 (517)
T ss_pred             hhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence            3322      112333467788888888999999999999999998        34 36799999999999999999999


Q ss_pred             HHHHHHHH
Q 010446          309 VFSRILKI  316 (510)
Q Consensus       309 ~~~~al~~  316 (510)
                      .|++|+.+
T Consensus       475 ~~~~A~~L  482 (517)
T PRK10153        475 AYSTAFNL  482 (517)
T ss_pred             HHHHHHhc
Confidence            99999986

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.30  E-value=2.8e-05  Score=59.71  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ..++..|...++.|+|.+|++.++.....       -+.++....+...++.+|+..|++++|+..+++.+++.    +.
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh----P~   79 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTR-------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH----PT   79 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC
Confidence            34888999999999999999999887655       44466677889999999999999999999999998874    77


Q ss_pred             chHHHHHHHHHHHHHHhhhc---------------HHHHHHHHHHHHHHH
Q 010446          199 EPLLDAILLHMGSMYSTLEN---------------YEKSMLVYQRVINVL  233 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~al~~~  233 (510)
                      +|.+..+++..|.+++.+..               ..+|...|++.+..+
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            88888889999999888876               667777777776654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.29  E-value=1e-05  Score=68.94  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (510)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (510)
                      .++.|.-+...|+|.+|...|..-+.-+     ++.+....+++.||.+++.+|++++|...|..+..-     -|.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence            4778888889999999999999887754     566778889999999999999999999999998874     367888


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ..++++.||.+...+|+.++|...|+++++-+
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            88999999999999999999999999998866

>PRK15331 chaperone protein SicA; Provisional

Probab=98.28  E-value=8.2e-06  Score=64.10  Aligned_cols=100  Identities=8%  Similarity=0.023  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (510)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (510)
                      ...+..++..+..++..|++++|..+|+-....          ++...+.+..||.++...++|++|+..|..+..+.. 
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-  102 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-  102 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence            356677899999999999999999999977665          777788899999999999999999999998877642 


Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 010446          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN  231 (510)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  231 (510)
                         ++|..   .+..|.||...|+...|...|+.++.
T Consensus       103 ---~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        103 ---NDYRP---VFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ---CCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence               22222   68899999999999999999999887

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.28  E-value=6e-05  Score=73.15  Aligned_cols=131  Identities=15%  Similarity=0.162  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChH--------HHHHHHHHH
Q 010446          120 ELFNEVKSMIMMGN---KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK--------FVQSLLDMM  188 (510)
Q Consensus       120 ~l~~~~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~  188 (510)
                      .++-+|..+...++   ..+|+.+|++++++          +|+.+.++-.++.++.....+.        .+....+++
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l----------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS----------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            35556666665554   78999999999998          8888888888888776543332        222222222


Q ss_pred             HHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHH
Q 010446          189 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY  268 (510)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  268 (510)
                      ..+    .. .+....++..+|......|++++|...+++|+.+.        + .+.+|..+|.++...|++++|++.|
T Consensus       411 ~al----~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        411 VAL----PE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             hhc----cc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            221    11 12223557778888888999999999999999862        3 2578999999999999999999999


Q ss_pred             HHHHHH
Q 010446          269 HRVITI  274 (510)
Q Consensus       269 ~~al~~  274 (510)
                      ++|+.+
T Consensus       477 ~~A~~L  482 (517)
T PRK10153        477 STAFNL  482 (517)
T ss_pred             HHHHhc
Confidence            999987

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.28  E-value=1.7e-06  Score=52.31  Aligned_cols=41  Identities=32%  Similarity=0.279  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  497 (510)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  497 (510)
                      +.++.++|.+|..+|++++|..++++++++.++++|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999999974

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.26  E-value=3.6e-05  Score=71.20  Aligned_cols=119  Identities=18%  Similarity=0.100  Sum_probs=97.8

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010446          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (510)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (510)
                      -.++...++++.|+.++++..+.       .   +.   +...++.++...++-.+|++.+++++..        .|...
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~-------~---pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~  234 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRER-------D---PE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS  234 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhc-------C---Cc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence            34455678899999999886654       1   22   2245899999999999999999999853        34457


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                      ..+...+..+...++++.|++..+++..+        .|....+|..|+.+|...|++++|+..+..+
T Consensus       235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  235 ELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            78888999999999999999999999985        5777889999999999999999999877644

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK11906 transcriptional regulator; Provisional

Probab=98.25  E-value=8.6e-05  Score=68.51  Aligned_cols=163  Identities=11%  Similarity=0.048  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh---C------ChHHHHHHHHH
Q 010446          120 ELFNEVKSMIMMG---NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---G------DLKFVQSLLDM  187 (510)
Q Consensus       120 ~l~~~~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g------~~~~A~~~~~~  187 (510)
                      .++-.|......+   ..+.|+.+|.+++..       ...+|..+.++..++.+++..   |      +..+|....++
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r  329 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK-------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY  329 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            3445555544443   345677788888722       233889999999999988654   2      22344455555


Q ss_pred             HHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHH
Q 010446          188 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI  267 (510)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  267 (510)
                      +.++.       +.-+.++..+|.+....|+++.|...|++|+.+        +|..+.+++..|.+....|+.++|.+.
T Consensus       330 Aveld-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~  394 (458)
T PRK11906        330 VSDIT-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARIC  394 (458)
T ss_pred             HHhcC-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55442       333456889999999999999999999999986        477789999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcch-HHHHHHHHH-HHHHcCChHHHHHHHHHH
Q 010446          268 YHRVITILELNRGTESADL-VLPLFSLGS-LFIKEGKAVDAESVFSRI  313 (510)
Q Consensus       268 ~~~al~~~~~~~~~~~~~~-~~~~~~la~-~~~~~g~~~~A~~~~~~a  313 (510)
                      .++++++        +|.. ......+-. .|+ ....++|+.+|-+-
T Consensus       395 i~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  433 (458)
T PRK11906        395 IDKSLQL--------EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE  433 (458)
T ss_pred             HHHHhcc--------CchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence            9999987        3332 333333333 344 45578888777543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=9.6e-05  Score=64.01  Aligned_cols=103  Identities=13%  Similarity=0.134  Sum_probs=86.1

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHH
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE---NYEKSMLVYQRVINVLE  234 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~  234 (510)
                      +|.++.-|..||.+|+..|++..|...|.++.++.    ++++++   +..+|.+++.+.   .-.++...+++++..  
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--  222 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEI---LLGLAEALYYQAGQQMTAKARALLRQALAL--  222 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHH---HHHHHHHHHHhcCCcccHHHHHHHHHHHhc--
Confidence            88889999999999999999999999999999986    444544   556666655543   456888999999875  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                            ++....+++.+|..++..|+|.+|...++..++..
T Consensus       223 ------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         223 ------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             ------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence                  45667889999999999999999999999998873

>PRK15331 chaperone protein SicA; Provisional

Probab=98.22  E-value=2.4e-05  Score=61.54  Aligned_cols=101  Identities=11%  Similarity=0.099  Sum_probs=83.1

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      +++.....+..|.-++..|++++|..+|+-+....       +.....+..||.++..+++|++|+..|..+..+..   
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~---  102 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK---  102 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence            66677788999999999999999999998765532       22234478999999999999999999999887642   


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (510)
                        ++|   ...+..|.||...|+.+.|...|+.+++
T Consensus       103 --~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        103 --NDY---RPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             --CCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence              222   2367889999999999999999999887

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=0.001  Score=56.10  Aligned_cols=186  Identities=18%  Similarity=0.214  Sum_probs=130.0

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCh-HHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL-KFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      +......|...+.+.-+.......+++.                 .. ..+|.. +..+..+++-             ..
T Consensus       129 Ae~~~~lgnpqesLdRl~~L~~~V~~ii-----------------~~-~e~~~~~ESsv~lW~KR-------------l~  177 (366)
T KOG2796|consen  129 AELQQYLGNPQESLDRLHKLKTVVSKIL-----------------AN-LEQGLAEESSIRLWRKR-------------LG  177 (366)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHH-----------------HH-HHhccchhhHHHHHHHH-------------HH
Confidence            3444567777777776665555433322                 11 123333 3444444432             22


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                      .+.+.+..++.-.|+|.-+...+.+.++.       +++........+|.+-++.|+.+.|..++++.-+...+..  +.
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~~  248 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--GL  248 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--cc
Confidence            34677788888899999999999888873       2233445566789999999999999999997765544432  12


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      .....+..+.+.+|.-.+++.+|...+.+.+..        ++..+.+.++.|.+....|+...|++.++.+++.
T Consensus       249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            233456778888999999999999999888763        4566677888999999999999999999988877

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.20  E-value=6.9e-05  Score=69.37  Aligned_cols=120  Identities=13%  Similarity=0.110  Sum_probs=98.9

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010446          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (510)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (510)
                      .+-..+...++++.|+.++++..+..       |..   ...++.++...++..+|+..+.+++..        .|....
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~-------pev---~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~  235 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERD-------PEV---AVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE  235 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcC-------CcH---HHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence            34455566789999999998866432       443   456888998899999999999999853        344477


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR  312 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  312 (510)
                      .+...+..+...++++.|+.+.++++++        .|....+|..|+.+|...|++++|+..++.
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            8888999999999999999999999997        677789999999999999999999977663

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.19  E-value=0.0011  Score=52.96  Aligned_cols=139  Identities=19%  Similarity=0.204  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      |.+.. .+.+|....+.|++.+|...|++++.-.       -......+..+++..+..+++..|...+++..+.-.   
T Consensus        87 pTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p---  155 (251)
T COG4700          87 PTVQN-RYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP---  155 (251)
T ss_pred             hhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC---
Confidence            44444 6789999999999999999999998632       122355678899999999999999999998877521   


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                         ..........+|.++...|++.+|+..|+.++..+      ..+   .+....+..+.++|+.++|..-+....+..
T Consensus       156 ---a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y------pg~---~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~  223 (251)
T COG4700         156 ---AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY------PGP---QARIYYAEMLAKQGRLREANAQYVAVVDTA  223 (251)
T ss_pred             ---ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC------CCH---HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence               11234456678999999999999999999999864      111   233445788889999999988887766655


Q ss_pred             Hh
Q 010446          360 KD  361 (510)
Q Consensus       360 ~~  361 (510)
                      .+
T Consensus       224 ~r  225 (251)
T COG4700         224 KR  225 (251)
T ss_pred             Hh
Confidence            44

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=8e-05  Score=64.50  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=92.5

Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIY  317 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~  317 (510)
                      +|..+.-|..||.+|...|++..|...|.+|+++        .++....+..+|.++..+.   .-.++...+++++.. 
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-  222 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-  222 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence            4667888999999999999999999999999998        4556677778888776554   356888999999884 


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (510)
                             +|....+...||..++..|+|.+|...++..++..      .++.+....+
T Consensus       223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l------p~~~~rr~~i  267 (287)
T COG4235         223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL------PADDPRRSLI  267 (287)
T ss_pred             -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------CCCCchHHHH
Confidence                   56677889999999999999999999999999873      4455554433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.16  E-value=0.00048  Score=54.83  Aligned_cols=136  Identities=19%  Similarity=0.193  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      ......+|......|++.+|..+|++++.-.       .......+..+++.....+++..|...+++..+.-      .
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~------p  155 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN------P  155 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC------C
Confidence            4456789999999999999999999998631       23345677889999999999999999998877642      1


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (510)
                      ..........+|..+...|++.+|+..|+.++..+       |+..    .....+..+.++|+.++|..-+....+...
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-------pg~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~  224 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-------PGPQ----ARIYYAEMLAKQGRLREANAQYVAVVDTAK  224 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-------CCHH----HHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            11233455668999999999999999999999874       2222    234578899999999999887766655443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.15  E-value=0.00012  Score=56.32  Aligned_cols=104  Identities=17%  Similarity=0.101  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010446          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (510)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (510)
                      ...+..-|...+..|+|++|++.|+.....+       |..+....+...++.+|...|++++|+..+++-+++     .
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-------P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----h   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-------PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----H   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-------CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C
Confidence            3456778888999999999999999877663       445555667789999999999999999999999886     4


Q ss_pred             CCChhHHHHHHHHHHHHHhccC---------------HHHHHHHHHHHHHH
Q 010446          409 KEHPSFVTHLLNLAASYSRSKN---------------FVEAERLLRICLDI  444 (510)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~  444 (510)
                      +.||....+++..|.++..+..               ..+|...|++.+..
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            7788888999999999988876               67777777777764

>PRK11906 transcriptional regulator; Provisional

Probab=98.15  E-value=0.00016  Score=66.82  Aligned_cols=163  Identities=16%  Similarity=0.057  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHH
Q 010446          206 LLHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVIT  273 (510)
Q Consensus       206 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~  273 (510)
                      ++..|......+   ..+.|+.+|.+++...     +-+|..+.++..++.++...         .+..+|..+.++|++
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve  332 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD  332 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            355555554443   4567888888888431     23577788888888887654         234567777777777


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010446          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  353 (510)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (510)
                      +        .+..+.++..+|.+....++++.|...|++|+.+        +|..+.+++..|.+....|+.++|.+.++
T Consensus       333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6        5666889999999999999999999999999985        67888999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (510)
Q Consensus       354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (510)
                      +++++       +|.... +.+.......|. ....++|+.+|-+
T Consensus       397 ~alrL-------sP~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~  432 (458)
T PRK11906        397 KSLQL-------EPRRRK-AVVIKECVDMYV-PNPLKNNIKLYYK  432 (458)
T ss_pred             HHhcc-------CchhhH-HHHHHHHHHHHc-CCchhhhHHHHhh
Confidence            99987       222211 112111222343 3456778777644

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.0014  Score=55.35  Aligned_cols=140  Identities=11%  Similarity=0.092  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (510)
                      ..+.+.+..++...|.|.-....+.+.++..   ++..|.   ....+|.+.++.|+.+.|..+|++.-+...+..+  -
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---~e~~p~---L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~  248 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY---PEQEPQ---LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--L  248 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC---CcccHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--c
Confidence            3467788888889999999999998887643   233343   3678999999999999999999987765544422  2


Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                      .....+..+.+.+|.-.+++.+|...+.+.+..        ++..+.+.++-|.|....|+...|++..+.++++.
T Consensus       249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            234556778899999999999999999888765        55667888999999999999999999999888763

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.11  E-value=1.8e-05  Score=72.65  Aligned_cols=72  Identities=14%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      ..|.....++++|.+|...|+|++|+..|++++++     .|+++....+++++|.+|..+|++++|+.++++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46778899999999999999999999999999996     3444433356999999999999999999999999997

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.08  E-value=0.0061  Score=53.45  Aligned_cols=228  Identities=26%  Similarity=0.351  Sum_probs=163.0

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446          131 MGNKNDAIDLLQANYEAVKEQINAGNKGI--EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (510)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (510)
                      .+.+..+...+...+..          .+  .........+..+...+++..+...+......     ...+.....+..
T Consensus        36 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  100 (291)
T COG0457          36 LGELAEALELLEEALEL----------LPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-----ELLPNLAEALLN  100 (291)
T ss_pred             HhhHHHHHHHHHHHHhc----------CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----hhccchHHHHHH
Confidence            34555555555555543          22  23567788888999999999999999887653     122445556788


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 010446          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK-VLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (510)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (510)
                      .+..+...+++..+...+.+++.....      .  .......+. ++...|++++|...+.+++...     +......
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~  167 (291)
T COG0457         101 LGLLLEALGKYEEALELLEKALALDPD------P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELA  167 (291)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHcCCCC------c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchH
Confidence            899999999999999999888764211      1  122223333 8999999999999999995531     0012345


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010446          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (510)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (510)
                      ..+...+..+...+++++|+..+.+++......       ....+..++..+...+++++|...+..++....       
T Consensus       168 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------  233 (291)
T COG0457         168 EALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDP-------  233 (291)
T ss_pred             HHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc-------
Confidence            566667777888999999999999998863211       456778899999999999999999999988732       


Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (510)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (510)
                      .   ....+..++..+...+.++++...+.+++...
T Consensus       234 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         234 D---NAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             c---cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            2   22344667777777778999999998887753

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.08  E-value=2.4e-05  Score=71.97  Aligned_cols=72  Identities=14%  Similarity=0.160  Sum_probs=64.3

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                      ..|.....++++|.+|...|++++|+..|++++++       .|++.....+++++|.+|..+|++++|+..+++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35678899999999999999999999999999998       5566554457899999999999999999999999986

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.07  E-value=1.7e-05  Score=53.89  Aligned_cols=55  Identities=18%  Similarity=0.283  Sum_probs=49.3

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (510)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (510)
                      ++..|++++|+..|++++..          .|....++..+|.+|...|++++|...++++....
T Consensus         1 ll~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR----------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH----------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             ChhccCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            36789999999999999988          88899999999999999999999999999887664

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.05  E-value=0.0037  Score=54.86  Aligned_cols=231  Identities=27%  Similarity=0.341  Sum_probs=164.1

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 010446          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (510)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (510)
                      .+.+..+...+...+.....      ..........+..+...+++..+...+......      ...+.....+...+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  103 (291)
T COG0457          36 LGELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGL  103 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHH
Confidence            34455555555554443210      013456778888999999999999999988764      124556778888999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH
Q 010446          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN  374 (510)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  374 (510)
                      .+...+++..+...+.+++....      .+  .......+. ++...|++++|...+.+++..       .+.......
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~  168 (291)
T COG0457         104 LLEALGKYEEALELLEKALALDP------DP--DLAEALLALGALYELGDYEEALELYEKALEL-------DPELNELAE  168 (291)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCCC------Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCccchHH
Confidence            99999999999999988876421      11  122223333 899999999999999999552       111122334


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCCh
Q 010446          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (510)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (510)
                      .....+..+...+++++|+..+.+++......       ....+..++..+...+++++|...+..++...        +
T Consensus       169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~  233 (291)
T COG0457         169 ALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------P  233 (291)
T ss_pred             HHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------c
Confidence            44566666888999999999999988764221       45678889999999999999999999998852        2


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010446          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (510)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  488 (510)
                      .....+..++..+...|.++++...+.+++....
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         234 DNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            2344566777777777889999999998887553

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.03  E-value=1.2e-05  Score=48.46  Aligned_cols=41  Identities=34%  Similarity=0.520  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (510)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (510)
                      +.++.++|.+|..+|++++|..++++++.+.++.+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999999885

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.0086  Score=52.68  Aligned_cols=299  Identities=11%  Similarity=0.096  Sum_probs=184.0

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI----EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      +..+.......++++++..+.+.+.....    ...++    ..-.+...+|..+...|+.++-....+........++.
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~----~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K   83 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQG----ASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK   83 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhcc----ccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh
Confidence            44555566666778888888777664211    11121    22346788999999999999888877766555433222


Q ss_pred             CchHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYST-LENYEKSMLVYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                        +..+.+...+-..+.. .+..+.-+..+..+++...+.   +.. ..-..-..+...|...++|.+|+......+.-.
T Consensus        84 --akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rEl  158 (411)
T KOG1463|consen   84 --AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLREL  158 (411)
T ss_pred             --HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence              3333333444333332 344556666777777665432   111 122334468889999999999999999998888


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010446          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV-GMAMCSLAHAKCANGNAEEAVELYKK  354 (510)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~  354 (510)
                      ++..  +.+....++..-..+|....+..+|...+..|.......+.|  |.. +..-..-|.++....+|.-|..||-+
T Consensus       159 KKlD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp--PqlQa~lDLqSGIlha~ekDykTafSYFyE  234 (411)
T KOG1463|consen  159 KKLD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYE  234 (411)
T ss_pred             Hhcc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC--HHHHHHHHHhccceeecccccchHHHHHHH
Confidence            8765  445556666667788999999999998888877766555432  332 22223336667777899999999999


Q ss_pred             HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHH
Q 010446          355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFV  432 (510)
Q Consensus       355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~  432 (510)
                      |.+-+...    .++......+-.+--+-...+..++--.++.-=..+.  .    ......+...++..+..  ..+|+
T Consensus       235 AfEgf~s~----~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y----~g~~i~AmkavAeA~~nRSLkdF~  304 (411)
T KOG1463|consen  235 AFEGFDSL----DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y----AGRDIDAMKAVAEAFGNRSLKDFE  304 (411)
T ss_pred             HHcccccc----CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c----cCcchHHHHHHHHHhcCCcHHHHH
Confidence            99887652    3333444444455555556666666544443211111  1    11233566667776653  34667


Q ss_pred             HHHHHHHHHHH
Q 010446          433 EAERLLRICLD  443 (510)
Q Consensus       433 ~A~~~~~~al~  443 (510)
                      .|+.-|..-+.
T Consensus       305 ~AL~~yk~eL~  315 (411)
T KOG1463|consen  305 KALADYKKELA  315 (411)
T ss_pred             HHHHHhHHHHh
Confidence            77666665443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.00  E-value=0.00013  Score=58.61  Aligned_cols=100  Identities=18%  Similarity=0.138  Sum_probs=87.3

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                      +-.-|+-++..|+|.+|..-|..|+.++...   ........|.+.|.+.+.++.++.|+.-+.+++++        .|.
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pt  166 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPT  166 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cch
Confidence            4566888899999999999999999987553   12356778899999999999999999999999998        566


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      ...++...|.+|..+..|++|+.-|.+.++.
T Consensus       167 y~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  167 YEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            7788888999999999999999999999885

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.99  E-value=0.0003  Score=56.65  Aligned_cols=105  Identities=14%  Similarity=0.172  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (510)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (510)
                      .....+-..+..++..|+|.+|..-|..||++.....     ......+|.+.|.+++.++.++.|+.-..+++.+.   
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---  164 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---  164 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence            3455577788999999999999999999999854432     45667788899999999999999999999999875   


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                          |....++...+.+|....+|++|+.-|.+.++.
T Consensus       165 ----pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  165 ----PTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             ----chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence                667777888999999999999999999998876

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.92  E-value=0.00053  Score=62.93  Aligned_cols=305  Identities=12%  Similarity=0.017  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh-------
Q 010446          164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-------  236 (510)
Q Consensus       164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------  236 (510)
                      .+..-+...+..|.|+.-.++++....+.+..+   |..   ++.--..|+..|.... ....++...+-...       
T Consensus        19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~---~v~---~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~   91 (696)
T KOG2471|consen   19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSG---PVL---HNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVS   91 (696)
T ss_pred             HHHHHHHhccCCcchHHHHHHHHHHHhcccccc---cee---eehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchh
Confidence            334444455677888888888877665542211   111   2222223444444332 22222222221111       


Q ss_pred             cCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      .+.+.......+++.|.+|+....+..|++.....+...+...   ...........-..+....+.++|+.++.-.-++
T Consensus        92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~  168 (696)
T KOG2471|consen   92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI  168 (696)
T ss_pred             cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112223355678899999999999999988777766544332   1112222333445566667778887765533222


Q ss_pred             HHHH----cCC----------CChHHHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446          317 YTKV----YGE----------NDGRVGMA-----------MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (510)
Q Consensus       317 ~~~~----~~~----------~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (510)
                      ....    .|.          .+|..+..           ...-...+....+..-+..-.+.++.+.      + +.  
T Consensus       169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a------~-~s--  239 (696)
T KOG2471|consen  169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA------Q-DS--  239 (696)
T ss_pred             HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc------C-CC--
Confidence            2111    010          01110000           0001112222222222222222222221      1 12  


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HHHHH
Q 010446          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLD-IMTKT  448 (510)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~  448 (510)
                       ...+.-.+..++..|++.+|.+.+... .+.+...+...|.  ....+++||.++++.|.|.-+..+|.+|+. ...+.
T Consensus       240 -~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  240 -SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             -cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence             123355678888999999999887643 2222222222232  334568999999999999999999999996 43333


Q ss_pred             hCC---C------ChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          449 VGP---D------DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       449 ~~~---~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      -..   .      .-....++++.|..|...|++-.|.++|.+++..+..
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~  367 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR  367 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence            211   1      1233567899999999999999999999999987743

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.92  E-value=4e-05  Score=52.03  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=47.2

Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      ...|++++|+..+++++..        .|....++..+|.+|...|++++|...+++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5689999999999999987        5677889999999999999999999999998874

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.87  E-value=0.00014  Score=50.18  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      ..+|...+++++|++++++++.+        +|.....+...|.++...|++++|...++++++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56889999999999999999998        5667888999999999999999999999999976

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.87  E-value=0.025  Score=53.16  Aligned_cols=265  Identities=15%  Similarity=0.107  Sum_probs=145.0

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChh-HHHH
Q 010446          169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTS  247 (510)
Q Consensus       169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~  247 (510)
                      +.+..+.|+++.-..+....       ..+.+   ......+......|+++++..+.+++.............. ....
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~-------~~~~~---~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~   74 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQS-------NEDSP---EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRA   74 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhc-------cCCCh---hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            45667888988844443332       12222   1223334444588999999999999887765432221111 1111


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHHHcC--CC
Q 010446          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG-SLFIKEGKAVDAESVFSRILKIYTKVYG--EN  324 (510)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~  324 (510)
                      +..+. .+....+.+++..+......         .   ......+- ..-.+......-....+..+......+.  ..
T Consensus        75 y~~l~-~lq~L~Elee~~~~~~~~~~---------~---~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~  141 (352)
T PF02259_consen   75 YPSLV-KLQQLVELEEIIELKSNLSQ---------N---PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILL  141 (352)
T ss_pred             HHHHH-HHhHHHHHHHHHHHHHhhcc---------c---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccc
Confidence            21111 11222333333333211100         0   00000010 0011111112223333444444333322  12


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL-IT  403 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~  403 (510)
                      .......+...+.+..+.|+++.|...+.++.......   ...   ...+....+.++...|+..+|+..++..+. ..
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~---~~~---~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS---ESL---LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc---cCC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            34577889999999999999999999999887653211   111   223446679999999999999999988887 22


Q ss_pred             HHhh-------------------------CCCChhHHHHHHHHHHHHHhc------cCHHHHHHHHHHHHHHHHHHhCCC
Q 010446          404 EKYK-------------------------GKEHPSFVTHLLNLAASYSRS------KNFVEAERLLRICLDIMTKTVGPD  452 (510)
Q Consensus       404 ~~~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~  452 (510)
                      ....                         .......+.++..+|......      +..+++...|+++..+        
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------  287 (352)
T PF02259_consen  216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------  287 (352)
T ss_pred             hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------
Confidence            2210                         011233456677777777777      7888889999988875        


Q ss_pred             ChhhHHHHHHHHHHHHhc
Q 010446          453 DQSISFPMLHLGITLYHL  470 (510)
Q Consensus       453 ~~~~~~~~~~la~~~~~~  470 (510)
                      +|....++..+|..+...
T Consensus       288 ~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  288 DPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ChhHHHHHHHHHHHHHHH
Confidence            344455677777766654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.86  E-value=0.0071  Score=56.33  Aligned_cols=129  Identities=17%  Similarity=0.157  Sum_probs=96.0

Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh------
Q 010446          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------  326 (510)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------  326 (510)
                      .-..+..++..-++..++|+++        +|+.+.+|..|+.-  ......+|+++++++++..+..++....      
T Consensus       176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~  245 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH  245 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence            3344567778888888999988        46667777776642  2334688999999999988776554311      


Q ss_pred             -----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 010446          327 -----------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  395 (510)
Q Consensus       327 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  395 (510)
                                 ....+...+|.+..+.|+.++|++.++..++..       + ......+..+|..++...+.+.++..+
T Consensus       246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-------p-~~~~l~IrenLie~LLelq~Yad~q~l  317 (539)
T PF04184_consen  246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-------P-NLDNLNIRENLIEALLELQAYADVQAL  317 (539)
T ss_pred             hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-------C-ccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence                       123456779999999999999999999988762       1 222345789999999999999999988


Q ss_pred             HHHH
Q 010446          396 LEEC  399 (510)
Q Consensus       396 ~~~a  399 (510)
                      +.+-
T Consensus       318 L~kY  321 (539)
T PF04184_consen  318 LAKY  321 (539)
T ss_pred             HHHh
Confidence            8763

The molecular function of this protein is uncertain.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.85  E-value=0.0031  Score=46.08  Aligned_cols=122  Identities=16%  Similarity=0.190  Sum_probs=87.5

Q ss_pred             HHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          287 VLPLFSLGS--LFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       287 ~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                      +.+|..|+.  -...-|-|++|...+++++++.+.+....--    ..+.++..|+..+..+|+|++++....+++..+.
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            445555544  3456689999999999999998766322211    2556778899999999999999999999999988


Q ss_pred             hhccCCCCCh-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010446          361 DSNYMSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (510)
Q Consensus       361 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (510)
                      ....+..+.. .+..+-.+.|..+...|+.++|+..|+.+-++..+..|
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG  135 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG  135 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence            7654444432 34455678899999999999999999999988766544

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.84  E-value=0.0055  Score=44.85  Aligned_cols=118  Identities=15%  Similarity=0.095  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHH--HhhcCCHHHHHHHHHHHHHHHHHhcCCCCc----chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          244 LVTSLLGMAKV--LGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       244 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                      ++.+|..|+..  ...-|-|++|...++++++..+.+.....-    ..+.++..|+..+..+|+|++++....+++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            34555555444  445689999999999999998776543221    235577889999999999999999999999988


Q ss_pred             HHHcCCCChH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446          318 TKVYGENDGR----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       318 ~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (510)
                      .+.. .-+.+    .+.+.++.+..+...|+.++|+..|+.+-+...+.
T Consensus        86 NRRG-EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen   86 NRRG-ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             hhcc-ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            7653 22222    45566778889999999999999999999887664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.84  E-value=0.00015  Score=50.02  Aligned_cols=58  Identities=24%  Similarity=0.282  Sum_probs=52.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      |..+|...+++++|+.++++++.+        +|.....+...|.++...|++++|...++++++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            356889999999999999999986        4666788899999999999999999999999987

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.015  Score=49.87  Aligned_cols=230  Identities=10%  Similarity=0.104  Sum_probs=152.0

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH
Q 010446          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (510)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (510)
                      ++.+....+..++++|+..|.+.+..-...  ......+.-.+...++..|...|++..-.+...........+.  .|.
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~--dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft--k~k   82 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSK--DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT--KPK   82 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCCh--hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc--chh
Confidence            346777788899999999998887541000  0001223445778999999999999887776665544443322  244


Q ss_pred             HHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          202 LDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       202 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ...+...+-.-+ .....++.-+......++...+..  ..-.....-..+...++..|.|.+|+....-.+.-.++.. 
T Consensus        83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D-  159 (421)
T COG5159          83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD-  159 (421)
T ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-
Confidence            444444443333 334566777777777776654320  0011223345678899999999999999999888877764 


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                       +.+.....+..-..+|....+..++...+..|.......+.|  |. .+..-..-|...+...+|.-|..+|-++++-+
T Consensus       160 -DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         160 -DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             -CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence             456666777777889999999999988888777766655433  32 22222233566777889999999999998876


Q ss_pred             Hh
Q 010446          360 KD  361 (510)
Q Consensus       360 ~~  361 (510)
                      ..
T Consensus       237 t~  238 (421)
T COG5159         237 TL  238 (421)
T ss_pred             cc
Confidence            54

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.019  Score=50.62  Aligned_cols=169  Identities=11%  Similarity=0.019  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +...+...+..|++.+|....++.++-          .|....++..--..++..|+.......+++.+..   -+.+.|
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d----------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp  172 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDD----------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLP  172 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHh----------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCc
Confidence            444556677888888888888887765          6666666666777788888888888777776543   245556


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      -...+.-.++-.+...|-|++|++..++++++.        +....+....+.++...|++.++.++..+.-...+.   
T Consensus       173 ~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~---  241 (491)
T KOG2610|consen  173 CYSYVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ---  241 (491)
T ss_pred             HHHHHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh---
Confidence            666666677888889999999999999998863        444667778888999999999999988776554432   


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (510)
                       .......-|...|.++...+.|+.|+..|++-+
T Consensus       242 -s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  242 -SWMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             -hhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence             112223345566788888899999999998643

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.83  E-value=0.035  Score=53.80  Aligned_cols=179  Identities=18%  Similarity=0.085  Sum_probs=121.0

Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH---HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLV---LPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      .+..-.|+-+.++..+.++.+. ..+   ..|...   ..|+.....+..    ....+.|.+.+......        .
T Consensus       196 ~~vGF~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------y  263 (468)
T PF10300_consen  196 SFVGFSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------Y  263 (468)
T ss_pred             hhcCcCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------C
Confidence            3344568999999999887652 111   111111   112222222221    33455566666665553        4


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (510)
                      |.....+...|.++...|+.++|++.+++++....+.      ......++..++.++..+++|++|..++.+..+.   
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~------~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---  334 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW------KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---  334 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH------HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc---
Confidence            5556677888999999999999999999988543321      2223456789999999999999999999887763   


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhccCH-------HHHHHHHHHHHHHHHHHhCCCChhh
Q 010446          406 YKGKEHPSFVTHLLNLAASYSRSKNF-------VEAERLLRICLDIMTKTVGPDDQSI  456 (510)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~  456 (510)
                          .....+...+..|.++...|+.       ++|.+++.++-....+..+...|..
T Consensus       335 ----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E  388 (468)
T PF10300_consen  335 ----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLE  388 (468)
T ss_pred             ----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChH
Confidence                2344556677889999999999       8999999998888877655454433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.81  E-value=0.014  Score=53.52  Aligned_cols=205  Identities=15%  Similarity=0.199  Sum_probs=125.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHH
Q 010446          133 NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSM  212 (510)
Q Consensus       133 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  212 (510)
                      .+..+.....+.+...+..++  ......+.+...+-..|....+|+.-+.+.+.+..+..-   +-+....+....|.+
T Consensus       114 ~~~g~~~~l~~~L~~i~~rLd--~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~---~~~~~~~i~~~yafA  188 (374)
T PF13281_consen  114 RYSGARKELAKELRRIRQRLD--DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTC---DVANQHNIKFQYAFA  188 (374)
T ss_pred             HHhhHHHHHHHHHHHHHHhhC--CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc---chhcchHHHHHHHHH
Confidence            344455566666666666542  222334556677777899999999999999887665211   112223335667777


Q ss_pred             HHh---hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHHHHhcC
Q 010446          213 YST---LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       213 ~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      +.+   .|+.++|+..+..++..       ......+++..+|.+|...         ...++|+..|.++.++      
T Consensus       189 LnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~------  255 (374)
T PF13281_consen  189 LNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI------  255 (374)
T ss_pred             HhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC------
Confidence            777   89999999999887543       2233455677777776543         2355666666666655      


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG----ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (510)
                       + + ....-.|++.++...|...+...-.++.........+    .+....-..+..++.+..-.|++++|...++++.
T Consensus       256 -~-~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~  332 (374)
T PF13281_consen  256 -E-P-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF  332 (374)
T ss_pred             -C-c-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence             2 2 2233456777777777655444333333311111111    1122233455567778888999999999999998


Q ss_pred             HH
Q 010446          357 RV  358 (510)
Q Consensus       357 ~~  358 (510)
                      ..
T Consensus       333 ~l  334 (374)
T PF13281_consen  333 KL  334 (374)
T ss_pred             hc
Confidence            76

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.77  E-value=0.00021  Score=62.38  Aligned_cols=94  Identities=15%  Similarity=0.111  Sum_probs=83.5

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (510)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (510)
                      ...|+-|+.+|.|++|+++|.+++..        .|.....+.+.+..|.+..+|..|+.-+..|+.+-        ...
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y  164 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLY  164 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHH
Confidence            45688999999999999999999987        56667888999999999999999999999999863        456


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          329 GMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ..+|...+..-..+|...+|.+-++.++++
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            688889999999999999999999999987

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.77  E-value=0.031  Score=51.27  Aligned_cols=205  Identities=13%  Similarity=0.141  Sum_probs=124.2

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (510)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (510)
                      .+..+.....+.+...+..++........+..++-..|....+|+.-+.+.+..-.+    ...+.+....+....|.++
T Consensus       114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafAL  189 (374)
T PF13281_consen  114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFAL  189 (374)
T ss_pred             HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHH
Confidence            333344445555555444433322233455667777788888888877776655433    1112233455666788888


Q ss_pred             HH---cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHhhccC
Q 010446          298 IK---EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGNAEEAVELYKKALRVIKDSNYM  365 (510)
Q Consensus       298 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~  365 (510)
                      .+   .|+.++|+..+..++..       .......++..+|.+|-.         ....++|+..|.++.++.      
T Consensus       190 nRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~------  256 (374)
T PF13281_consen  190 NRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE------  256 (374)
T ss_pred             hhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC------
Confidence            88   89999999999887653       233344567777777643         234677888888877762      


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                       ++.    ..-.|++.++...|...+...-.++.........+    .......+.+..++.+..-.|++++|...++++
T Consensus       257 -~~~----Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~  331 (374)
T PF13281_consen  257 -PDY----YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA  331 (374)
T ss_pred             -ccc----cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             111    11256777888777654444333333311111111    122233345567788888999999999999999


Q ss_pred             HHH
Q 010446          442 LDI  444 (510)
Q Consensus       442 l~~  444 (510)
                      ...
T Consensus       332 ~~l  334 (374)
T PF13281_consen  332 FKL  334 (374)
T ss_pred             hhc
Confidence            874

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.73  E-value=0.00042  Score=60.62  Aligned_cols=98  Identities=12%  Similarity=0.022  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ...+-+.|..|+++|.|++|+++|.+++..          .|..+..+.+.+.+|+++..|..|+.-...++.+.     
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~----------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-----  161 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAV----------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-----  161 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhcc----------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-----
Confidence            334677899999999999999999999987          78888889999999999999999999999888775     


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                        ..+..+|...|..-..+|...+|.+-++.++.+
T Consensus       162 --~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  162 --KLYVKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             --HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence              455667888899999999999999999999886

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.0066  Score=52.04  Aligned_cols=227  Identities=14%  Similarity=0.125  Sum_probs=148.5

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 010446          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (510)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (510)
                      .+|+-....+++++|+..|.+.+..-.........+.-.+...++.+|...|++..--+......+.....   ..|...
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k~~   84 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TKPKIT   84 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cchhHH
Confidence            45666677889999999998887641000000112334567889999999999987766666655555443   233333


Q ss_pred             HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010446          330 MAMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (510)
Q Consensus       330 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (510)
                      .....+-.-. .....++.-+..+...++...+.    .........-..++.++.+.|+|.+|+......+.-.++.  
T Consensus        85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE----kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--  158 (421)
T COG5159          85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE----KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--  158 (421)
T ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--
Confidence            3333333222 33456777777777777766542    1111222334567889999999999999999888877776  


Q ss_pred             CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHH--HHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM--LHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      ++.+....++..-..+|....+..++..-+..|.......+-   |....+-  ..-|.......+|.-|..+|-++++-
T Consensus       159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC---Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC---PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC---CHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence            356666777777788999999999999888877766544432   2222222  22355566777889999999888875


Q ss_pred             HH
Q 010446          487 RE  488 (510)
Q Consensus       487 ~~  488 (510)
                      +.
T Consensus       236 ft  237 (421)
T COG5159         236 FT  237 (421)
T ss_pred             cc
Confidence            53

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.69  E-value=0.073  Score=53.33  Aligned_cols=235  Identities=14%  Similarity=0.102  Sum_probs=139.0

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (510)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (510)
                      ......+++.+|+....+.++.          .|+...+...-|..+.++|..++|..+++.....    +.++   ...
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk----------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~----~~~D---~~t   79 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKK----------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL----KGTD---DLT   79 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC----CCCc---hHH
Confidence            3456778899999999888876          7888888888899999999999999777654332    2222   223


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                      +..+-.+|..+|++++|..+|++++..+        |. -..+..+=.+|.+.+.|.+-.+.   ++++++..+  ..+.
T Consensus        80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~p--k~~y  145 (932)
T KOG2053|consen   80 LQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNFP--KRAY  145 (932)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCC--cccc
Confidence            6678889999999999999999998753        33 44455666677777777654443   333333221  2222


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHH-H-HHHHHHHHHHHcCCC-ChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          286 LVLPLFSLGSLFIKEGKAVDAES-V-FSRILKIYTKVYGEN-DGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~-~-~~~al~~~~~~~~~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                        ..|..+..+.......++... . .--|-.++++..... ... .+... ..-.++..+|++++|.+.+..-+.-  .
T Consensus       146 --yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~--~  220 (932)
T KOG2053|consen  146 --YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAE--K  220 (932)
T ss_pred             --hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHH--h
Confidence              223334444444444444433 0 011111122222111 111 22221 1234567789999999998543322  1


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                         ..+.+..   .-..-...+...+++.+-.++..+.+..
T Consensus       221 ---l~~~~~~---l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  221 ---LTSANLY---LENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             ---ccccchH---HHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence               1122221   2234556677778888777776666553

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.027  Score=56.97  Aligned_cols=212  Identities=14%  Similarity=0.083  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010446          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (510)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (510)
                      +|..+|......|...+|++.|-++          ++|   ..|..........|.|++-+.++.-+.+..++.      
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~------ 1166 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP------ 1166 (1666)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc------
Confidence            3666777777777777777766654          222   234455556666777777777666655443221      


Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (510)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (510)
                         ..-..|...|.+.++..+-+++.          .|+++..    ....|.-++..|.|+.|.-+|...-        
T Consensus      1167 ---~id~eLi~AyAkt~rl~elE~fi----------~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~vS-------- 1221 (1666)
T KOG0985|consen 1167 ---YIDSELIFAYAKTNRLTELEEFI----------AGPNVAN----IQQVGDRCFEEKMYEAAKLLYSNVS-------- 1221 (1666)
T ss_pred             ---cchHHHHHHHHHhchHHHHHHHh----------cCCCchh----HHHHhHHHhhhhhhHHHHHHHHHhh--------
Confidence               11122334455555554433222          1333221    2345666667777766665554422        


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--HH---------------hhCCCChhHHHHHHHHHHHHHh
Q 010446          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT--EK---------------YKGKEHPSFVTHLLNLAASYSR  427 (510)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~---------------~~~~~~~~~~~~~~~la~~~~~  427 (510)
                                -+..||..+...|+|..|....++|-...  ++               ..|-+-.-.+.-+..+...|..
T Consensus      1222 ----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1222 ----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh
Confidence                      22446666677777777776666543221  00               0111111112234445666677


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446          428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (510)
Q Consensus       428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (510)
                      .|-+++-+.+++.++.+       +. .....+..||.+|.+- ++++-.++
T Consensus      1292 rGyFeElIsl~Ea~LGL-------ER-AHMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGL-------ER-AHMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred             cCcHHHHHHHHHhhhch-------hH-HHHHHHHHHHHHHHhc-CHHHHHHH
Confidence            77777666666666553       11 1223445566655432 34444333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.037  Score=48.82  Aligned_cols=165  Identities=11%  Similarity=-0.053  Sum_probs=124.7

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 010446          169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL  248 (510)
Q Consensus       169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  248 (510)
                      +.+....|++.+|....++.+.-.       |.-..++..--..++..|+.......+++.+...    .++-|-.....
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~-------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~  178 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDY-------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVH  178 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhC-------chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHH
Confidence            445567889999888888876543       4443445555667888999999888888877543    34556566667


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (510)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (510)
                      ..++..+...|-|++|++..++++++        ++....+....+.++...|++.++.++..+.-...+.    .....
T Consensus       179 GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~mla  246 (491)
T KOG2610|consen  179 GMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWMLA  246 (491)
T ss_pred             HHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhHHH
Confidence            77888999999999999999999988        4556778888999999999999999998876554332    12223


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446          329 GMAMCSLAHAKCANGNAEEAVELYKKAL  356 (510)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (510)
                      ...|-..|..+...+.++.|++.|.+-+
T Consensus       247 sHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  247 SHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            4445667888889999999999998754

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.65  E-value=0.0018  Score=54.97  Aligned_cols=102  Identities=24%  Similarity=0.212  Sum_probs=82.3

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-----ChhH
Q 010446          340 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-----HPSF  414 (510)
Q Consensus       340 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~  414 (510)
                      .....+++|++.|.-|+-...-.   +.++...+.++..+|.+|...|+.+....++++|+..+.+.+...     ..+.
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~---~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~  164 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIK---KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE  164 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence            34557889999999888776643   456667888999999999999998888888888888877665332     2344


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          415 VTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      ..+.+.+|.++.+.|++++|..+|.+++..
T Consensus       165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            568889999999999999999999999873

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.64  E-value=0.037  Score=53.65  Aligned_cols=130  Identities=9%  Similarity=0.051  Sum_probs=67.5

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHh-----hhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI-----VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      +..++..|..++......-+++-|+..|-+....     .+.++.-+..    -...+.+-..-|+|++|++.|..+-..
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~----~~q~aei~~~~g~feeaek~yld~drr  763 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSK----EQQRAEISAFYGEFEEAEKLYLDADRR  763 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhH----HHHhHhHhhhhcchhHhhhhhhccchh
Confidence            4446778888888887777788888777654322     1111111100    122344444558888888888654221


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          233 LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR  312 (510)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  312 (510)
                                +.+      ...+...|+|-.-.++++..      ..+.++...-.++.++|..+..+..+++|.++|.+
T Consensus       764 ----------DLA------ielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  764 ----------DLA------IELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             ----------hhh------HHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      111      12233444444333332211      01112333445666667666666667766666654


Q ss_pred             H
Q 010446          313 I  313 (510)
Q Consensus       313 a  313 (510)
                      .
T Consensus       822 ~  822 (1189)
T KOG2041|consen  822 C  822 (1189)
T ss_pred             c
Confidence            4

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.64  E-value=0.0012  Score=56.11  Aligned_cols=100  Identities=15%  Similarity=0.162  Sum_probs=80.3

Q ss_pred             hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC-----hhHHHHHH
Q 010446          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-----ILLVTSLL  249 (510)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~  249 (510)
                      ...+++|+..|.-|+-.....+..+...+.++..+|++|...|+.+....++++|++.+.+.+....     ......++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            4456777777777776666556666678888999999999999999888999999888877653322     24567888


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          250 GMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .+|.++.+.|++++|..++.+++..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            9999999999999999999999864

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.59  E-value=0.057  Score=53.70  Aligned_cols=281  Identities=13%  Similarity=0.093  Sum_probs=170.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-----hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-----IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (510)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (510)
                      ...|..+++.+-+.            ....+...+|.+|..     ..|.+.|+.+++.+.........  .....+.+.
T Consensus       228 ~~~a~~~~~~~a~~------------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~--~~~~~a~~~  293 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL------------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT--KGLPPAQYG  293 (552)
T ss_pred             hhHHHHHHHHHHhh------------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh--hcCCccccH
Confidence            45677777765533            445566777777754     46899999999988762111000  001224678


Q ss_pred             HHHHHHhhh-----cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHhcC
Q 010446          209 MGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       209 l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~  280 (510)
                      +|.+|....     ++..|..+|.++-+.          ....+.+.+|.++..-.   ++..|.++|..|...      
T Consensus       294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------  357 (552)
T KOG1550|consen  294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------  357 (552)
T ss_pred             HHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence            888888743     678899999888764          22456778888887765   578999999988754      


Q ss_pred             CCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKA  355 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a  355 (510)
                          ....+...++.+|..    .-+...|..++.++.+.       +++.   +...++..+.. .++++.+...+...
T Consensus       358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~  423 (552)
T KOG1550|consen  358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------GNPS---AAYLLGAFYEYGVGRYDTALALYLYL  423 (552)
T ss_pred             ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------cChh---hHHHHHHHHHHccccccHHHHHHHHH
Confidence                236778888888764    24678999999998874       2222   22333333322 27777776666655


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc---
Q 010446          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---  428 (510)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---  428 (510)
                      .+...+.      .......+..........    .+...+...+.++..          .....+...+|.+|..-   
T Consensus       424 a~~g~~~------~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~  487 (552)
T KOG1550|consen  424 AELGYEV------AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGT  487 (552)
T ss_pred             HHhhhhH------HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCC
Confidence            5442221      111111111111111111    133444555544432          23345667788888764   


Q ss_pred             -cCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhc-C--ChHHHHHHHHHHHH
Q 010446          429 -KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N--RDKEAEKLVLEALY  485 (510)
Q Consensus       429 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~al~  485 (510)
                       .+++.|...|..+...        .   ....+++|..+..- |  ....|..+|.++.+
T Consensus       488 ~~d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~  537 (552)
T KOG1550|consen  488 GRDPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE  537 (552)
T ss_pred             CCChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence             3589999999988762        1   57788999888752 1  15778888877765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.58  E-value=0.0037  Score=50.06  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCC------------hhHHHHHHHHHHHHHhhCChHHHHHHH
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG------------IEEVAILDIIALGYVYIGDLKFVQSLL  185 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~  185 (510)
                      +..+...+......|+...++..+++++.+++..+-.+...            .....++..++..+...|++++|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            34455566777788899999999999988765432111111            112345567788888999999999999


Q ss_pred             HHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446          186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (510)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (510)
                      ++++...       |..-.++..+..+|...|+..+|+..|++......+.+|..
T Consensus        86 ~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~  133 (146)
T PF03704_consen   86 QRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE  133 (146)
T ss_dssp             HHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence            9998875       55555688899999999999999999999998887665544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.58  E-value=0.0035  Score=50.15  Aligned_cols=117  Identities=21%  Similarity=0.136  Sum_probs=81.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC--------------hhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010446          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--------------PSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (510)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (510)
                      ...|......|+.+.++..+++++.++...+-++.              .....+...++..+...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            33455556677888888888888877643321110              1233456678888999999999999999999


Q ss_pred             HHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 010446          443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLT  502 (510)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  502 (510)
                      .+        +|..-.++..+..+|...|+..+|...|++......+-+|... +..+..
T Consensus        90 ~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P-s~~~~~  140 (146)
T PF03704_consen   90 AL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP-SPETRA  140 (146)
T ss_dssp             HH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-----HHHHH
T ss_pred             hc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc-CHHHHH
Confidence            85        5666778899999999999999999999999999998888653 444443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.58  E-value=0.0085  Score=48.54  Aligned_cols=99  Identities=17%  Similarity=0.101  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (510)
                      .+...++..+...|++++|+..++.++..       ..|......+-.+||.+...+|++++|+..+....         
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~-------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------  153 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQ-------TKDENLKALAALRLARVQLQQKKADAALKTLDTIK---------  153 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------
Confidence            34566788899999999999999998865       33444445566889999999999999998876532         


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      ++..........|.++...|+.++|+..|++++..
T Consensus       154 ~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         154 EESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            22234445667899999999999999999999985

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.57  E-value=0.018  Score=53.78  Aligned_cols=148  Identities=10%  Similarity=0.091  Sum_probs=93.2

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      .....++..++..-++...+||++          .|+.+.+|..|+.-.  .....+|+.+++++++..+..-.      
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei----------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg------  235 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEI----------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLG------  235 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh----------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhc------
Confidence            345567788888999999999988          777888887776532  23457888888887766533110      


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                           ........|..-+..  .           ..+......+...+|.+..+.|+.++|++.++..++..      ..
T Consensus       236 -----~s~~~~~~g~~~e~~--~-----------~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~  291 (539)
T PF04184_consen  236 -----KSQFLQHHGHFWEAW--H-----------RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PN  291 (539)
T ss_pred             -----hhhhhhcccchhhhh--h-----------ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------Cc
Confidence                 000011111111110  0           01122234455678888888888888888888877652      11


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (510)
                      .+...+..+|..++...+.|.++...+.+-
T Consensus       292 ~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  292 LDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            234567788888888888888887777653

The molecular function of this protein is uncertain.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00099  Score=55.37  Aligned_cols=102  Identities=16%  Similarity=0.112  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      +..+-..+..++....|..|+..|.+++.+          .|..+..+.+.+.++++..+++.+..-..+++++.     
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-----   74 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-----   74 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhc----------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-----
Confidence            344566778888888999999999999988          88888889999999999999999999999998876     


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR  236 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  236 (510)
                        |.....++.+|........|++|+..++++..+.+..
T Consensus        75 --~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   75 --PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             --hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence              7778889999999999999999999999999887664

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.50  E-value=0.11  Score=50.56  Aligned_cols=32  Identities=13%  Similarity=0.333  Sum_probs=23.1

Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRV  229 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  229 (510)
                      ++...-.++.++|..+..+..+++|.++|.+.
T Consensus       791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445566778888888888888888887764

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00084  Score=55.78  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                      +..-|+.++....|+.|+..|.+++.+        +|..+..+.+.+.+|.+..+++.+..-.++++++        .+.
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N   76 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN   76 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence            556677888889999999999999875        4666778899999999999999999999999998        567


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      .+...+.+|.+......|++|+..++++..+.+..
T Consensus        77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            78999999999999999999999999999988765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.43  E-value=0.03  Score=45.51  Aligned_cols=103  Identities=14%  Similarity=0.078  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC
Q 010446          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (510)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (510)
                      ..-..+...++..+...|++++|+..++.++...    .+......+-.+++.+...+|.+++|+..+....        
T Consensus        86 ~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--------  153 (207)
T COG2976          86 IYAVLAALELAKAEVEANNLDKAEAQLKQALAQT----KDENLKALAALRLARVQLQQKKADAALKTLDTIK--------  153 (207)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--------
Confidence            3344456678889999999999999999887543    2333344456789999999999999998876542        


Q ss_pred             CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                       ++......-...|.++...|+-++|...|+++++.
T Consensus       154 -~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         154 -EESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             -cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence             22334555667899999999999999999999986

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.41  E-value=0.011  Score=48.77  Aligned_cols=125  Identities=18%  Similarity=0.168  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC
Q 010446          309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR  388 (510)
Q Consensus       309 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  388 (510)
                      -++.-++-++...  ....+..++..+|..|.+.|+.++|.+.|.++.+..       ........++.++..+....|+
T Consensus        18 ~Le~elk~~~~n~--~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-------~~~~~~id~~l~~irv~i~~~d   88 (177)
T PF10602_consen   18 KLEAELKDAKSNL--GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-------TSPGHKIDMCLNVIRVAIFFGD   88 (177)
T ss_pred             HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-------CCHHHHHHHHHHHHHHHHHhCC
Confidence            3334444444332  344577889999999999999999999999987763       3445566778899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      +.....+..++-.......  +..........-|..+...++|.+|...|-.+...
T Consensus        89 ~~~v~~~i~ka~~~~~~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen   89 WSHVEKYIEKAESLIEKGG--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            9999999999988876531  11222223334566777889999999999877653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.005  Score=51.50  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC---Ch-------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---SI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (510)
                      ..++..-|+-++..|+|.+|...|+.|+...+...-..   .|       .....+.|++.|+...|+|-+++++....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            34578889999999999999999999998876653222   22       234467899999999999999999999988


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      ..        +|....+|+..|......=+.++|..-+.+++++
T Consensus       258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            76        6778999999999999999999999999999985

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.34  E-value=0.00064  Score=38.97  Aligned_cols=31  Identities=16%  Similarity=0.089  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          459 PMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      ++.+||.+|..+|++++|+++|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4688999999999999999999999988765

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.33  E-value=0.018  Score=47.47  Aligned_cols=111  Identities=15%  Similarity=0.088  Sum_probs=87.9

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (510)
                      ......++..+|..|...|+.++|++.|.++.+.+     .........+.++..+....|++.....++.++-..... 
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-  105 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-  105 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence            34556788999999999999999999999987753     233456778888999999999999999999999988765 


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                         +.+..........-|..+...++|.+|-..|-.+...
T Consensus       106 ---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  106 ---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence               3444444445556677778889999999988776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0043  Score=54.39  Aligned_cols=107  Identities=10%  Similarity=0.036  Sum_probs=91.8

Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                      ....+.-+-.-|+-|+...+|..|...|.+.+..-    ..+....+..|.|.|.+....|+|..|+.-..+++.+    
T Consensus        77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----  148 (390)
T KOG0551|consen   77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----  148 (390)
T ss_pred             hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            34566767888999999999999999999998752    2344466788999999999999999999999999987    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                          .|....+++.=|.++..+.++++|..+.+..+.+.
T Consensus       149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence                67778899999999999999999999999887764

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0088  Score=50.12  Aligned_cols=110  Identities=10%  Similarity=0.003  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH-hcCCCChhH-------HHHHHHHHHHHHhhCChHHHHHHHHH
Q 010446          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI-NAGNKGIEE-------VAILDIIALGYVYIGDLKFVQSLLDM  187 (510)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~  187 (510)
                      ..+..+...|..++..|+|.+|...|..|+..++.+. ...+..|+.       ...+.+.+.|+...|+|-++++....
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            4556688899999999999999999999998887763 334444432       34578899999999999999998888


Q ss_pred             HHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          188 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      .+...       |....+|+..|......-+.++|..-+.+++++
T Consensus       256 iL~~~-------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  256 ILRHH-------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             HHhcC-------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            77554       666777999999999999999999999999886

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.25  E-value=0.00093  Score=38.29  Aligned_cols=31  Identities=19%  Similarity=0.282  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (510)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (510)
                      ++.+||.+|...|++++|+++|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999999876543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.16  E-value=0.0068  Score=48.54  Aligned_cols=93  Identities=10%  Similarity=0.104  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCh---HHHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q 010446          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG  210 (510)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (510)
                      |+.|.+.++.....          +|.+++.+++.|.++..+.++   .++..+++.++.-.+..-.-+|....+++.+|
T Consensus         7 FE~ark~aea~y~~----------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lG   76 (186)
T PF06552_consen    7 FEHARKKAEAAYAK----------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLG   76 (186)
T ss_dssp             HHHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHh----------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            34566666665555          788889999999888776555   34555555544433322222366677789999


Q ss_pred             HHHHhhhc----HHHHHHHHHHHHHHHHHh
Q 010446          211 SMYSTLEN----YEKSMLVYQRVINVLESR  236 (510)
Q Consensus       211 ~~~~~~g~----~~~A~~~~~~al~~~~~~  236 (510)
                      .+|...+.    ..+|..+|++|...+++.
T Consensus        77 nA~ts~A~l~~d~~~A~~~F~kA~~~FqkA  106 (186)
T PF06552_consen   77 NAYTSLAFLTPDTAEAEEYFEKATEYFQKA  106 (186)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence            99887764    446666777766665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.16  E-value=0.27  Score=47.67  Aligned_cols=183  Identities=14%  Similarity=0.160  Sum_probs=105.6

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHH------HHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          207 LHMGSMYSTLENYEKSMLVYQRV------INVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ..++..+...|+|.+|.+.|.+.      ++++..          .-.+..++-+...|..++-..+.++--+...... 
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k-  704 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK-  704 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC-
Confidence            35677888899999999988753      333211          1234556667777777776666665555443332 


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVF------SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  354 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (510)
                        .|.      .-|.++...|+.++|+...      +-++++.++.    +......+..++..+.....+.-|.+.|.+
T Consensus       705 --ePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k  772 (1081)
T KOG1538|consen  705 --EPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLK  772 (1081)
T ss_pred             --CcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence              222      2356677788888887653      3445554443    222234444555555556666666666655


Q ss_pred             HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHH
Q 010446          355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  434 (510)
Q Consensus       355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  434 (510)
                      .-..                  ..+..++...+++++|..+.++--+.           ...++.-.|..+.+..++++|
T Consensus       773 ~gD~------------------ksiVqlHve~~~W~eAFalAe~hPe~-----------~~dVy~pyaqwLAE~DrFeEA  823 (1081)
T KOG1538|consen  773 MGDL------------------KSLVQLHVETQRWDEAFALAEKHPEF-----------KDDVYMPYAQWLAENDRFEEA  823 (1081)
T ss_pred             hccH------------------HHHhhheeecccchHhHhhhhhCccc-----------cccccchHHHHhhhhhhHHHH
Confidence            3222                  23456667778888887765542111           123455556666666666666


Q ss_pred             HHHHHHH
Q 010446          435 ERLLRIC  441 (510)
Q Consensus       435 ~~~~~~a  441 (510)
                      .+.|.+|
T Consensus       824 qkAfhkA  830 (1081)
T KOG1538|consen  824 QKAFHKA  830 (1081)
T ss_pred             HHHHHHh
Confidence            6666544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.11  E-value=0.38  Score=48.55  Aligned_cols=191  Identities=16%  Similarity=0.117  Sum_probs=107.3

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 010446          214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  293 (510)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  293 (510)
                      ...+++.+|+....+.++.        +|....+...-|.++.++|+.++|..+++.. ...       .+..-.++..+
T Consensus        20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~-------~~~D~~tLq~l   83 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YGL-------KGTDDLTLQFL   83 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-ccC-------CCCchHHHHHH
Confidence            3467888888888877764        3544455556678899999999999655433 221       12234567778


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHH
Q 010446          294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  373 (510)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  373 (510)
                      -.+|.++|++++|..+|++++..+        |. -..+..+=.+|.+.+.|.+-.+.   ++++++.    -|..+.. 
T Consensus        84 ~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~----~pk~~yy-  146 (932)
T KOG2053|consen   84 QNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKN----FPKRAYY-  146 (932)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh----CCcccch-
Confidence            899999999999999999998752        33 33444455566666666543322   3333333    2333332 


Q ss_pred             HHHHHHHHHHHHcCChHHHHH-----HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446          374 NMRIDLAELLHIVGRGQEGRE-----LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (510)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (510)
                       .|..+..++......++...     +.++..+..-+..| .-...++.. ..-.++..+|++++|.+.+..
T Consensus       147 -fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~  215 (932)
T KOG2053|consen  147 -FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEII-LYLLILELQGKYQEALEFLAI  215 (932)
T ss_pred             -HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHH-HHHHHHHhcccHHHHHHHHHH
Confidence             22334444444444443333     11222111111111 111112221 223456778899999988843

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.42  Score=49.02  Aligned_cols=220  Identities=19%  Similarity=0.119  Sum_probs=120.4

Q ss_pred             hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (510)
                      +.+.+|..+|.+....|...+|++.|-++        ++ |..   |........+.|.|++-..++.-+-+..++.   
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika--------dD-ps~---y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--- 1166 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA--------DD-PSN---YLEVIDVASRTGKYEDLVKYLLMARKKVREP--- 1166 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc--------CC-cHH---HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---
Confidence            44678999999999999999999988764        22 322   5666777888999999998888776543321   


Q ss_pred             CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (510)
                         .   .-..+...|.+.++..+-+++.          .|++.   + -.-..|.-++..|.|+.|.-+|...-     
T Consensus      1167 ---~---id~eLi~AyAkt~rl~elE~fi----------~gpN~---A-~i~~vGdrcf~~~~y~aAkl~y~~vS----- 1221 (1666)
T KOG0985|consen 1167 ---Y---IDSELIFAYAKTNRLTELEEFI----------AGPNV---A-NIQQVGDRCFEEKMYEAAKLLYSNVS----- 1221 (1666)
T ss_pred             ---c---chHHHHHHHHHhchHHHHHHHh----------cCCCc---h-hHHHHhHHHhhhhhhHHHHHHHHHhh-----
Confidence               1   1112334444555544433322          12221   1 12234555555555555554443221     


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHhhc-------------cCCCCChHHHHHHHHHHHHHH
Q 010446          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV--IKDSN-------------YMSLDDSIMENMRIDLAELLH  384 (510)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~-------------~~~~~~~~~~~~~~~la~~~~  384 (510)
                                 -+..|+..+...|+|..|.+..++|-..  +++..             ..|-+-...+.-+-.+...|.
T Consensus      1222 -----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1222 -----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH
Confidence                       2233444445555555555555443211  11000             001111112233456777888


Q ss_pred             HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (510)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (510)
                      ..|-+++-+.+++.++.+-        ......+..||.+|.+- ++++-.++++
T Consensus      1291 ~rGyFeElIsl~Ea~LGLE--------RAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLE--------RAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred             hcCcHHHHHHHHHhhhchh--------HHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            8888888888887776542        12234566778777653 4555444443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.09  E-value=0.013  Score=42.58  Aligned_cols=82  Identities=20%  Similarity=0.260  Sum_probs=61.5

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH
Q 010446          297 FIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (510)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (510)
                      ....|++.+|.+.+.+..+......... ......+..++|.++...|++++|...+++++++.++.    .|......+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~----~D~~~l~~a   83 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN----GDRRCLAYA   83 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH----CCHHHHHHH
Confidence            4578999999999999999876653222 11356678889999999999999999999999999874    444444444


Q ss_pred             HHHHHHH
Q 010446          376 RIDLAEL  382 (510)
Q Consensus       376 ~~~la~~  382 (510)
                      +..+..+
T Consensus        84 l~~~~~l   90 (94)
T PF12862_consen   84 LSWLANL   90 (94)
T ss_pred             HHHHHHH
Confidence            4444433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.04  E-value=0.00055  Score=38.52  Aligned_cols=32  Identities=16%  Similarity=0.124  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHH
Q 010446          141 LQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ  182 (510)
Q Consensus       141 ~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  182 (510)
                      |++++++          .|+.+.+++.+|.+|...|++++|+
T Consensus         2 y~kAie~----------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIEL----------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHH----------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            6788887          9999999999999999999999986

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.04  E-value=0.0023  Score=38.66  Aligned_cols=42  Identities=17%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (510)
                      .++..+|..|...|++++|++.|+++++.        .|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            35778999999999999999999999997        5666777777764

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.01  Score=52.11  Aligned_cols=107  Identities=9%  Similarity=0.039  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (510)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (510)
                      ........-..|..+++..+|..|+..|.++|..      ...+..-.+..|.+.+.+....|+|..|+.-..+++.+- 
T Consensus        77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-  149 (390)
T KOG0551|consen   77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-  149 (390)
T ss_pred             hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            3445556778899999999999999999999975      133344567788899999999999999999999988764 


Q ss_pred             hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                            |....+++.-+.++..+.++.+|..+++..+.+.
T Consensus       150 ------P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  150 ------PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ------cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence                  6677778999999999999999999999987764

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.03  E-value=0.013  Score=42.47  Aligned_cols=81  Identities=17%  Similarity=0.213  Sum_probs=59.5

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHH
Q 010446          383 LHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (510)
Q Consensus       383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (510)
                      ..+.|++.+|.+.+.+..+......... ......+..++|.++...|++++|+..+++++.+.++.  .+......++.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~   85 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS   85 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence            3568999999999999998876653222 12345677889999999999999999999999999886  23333344444


Q ss_pred             HHHH
Q 010446          462 HLGI  465 (510)
Q Consensus       462 ~la~  465 (510)
                      .+..
T Consensus        86 ~~~~   89 (94)
T PF12862_consen   86 WLAN   89 (94)
T ss_pred             HHHH
Confidence            4443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.00  E-value=0.0025  Score=38.54  Aligned_cols=42  Identities=36%  Similarity=0.327  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHH
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (510)
                      .++..+|..|...|++++|++.|+++++.        +|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            35778999999999999999999999984        4555666676664

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.96  E-value=0.00099  Score=37.49  Aligned_cols=32  Identities=19%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 010446          268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE  307 (510)
Q Consensus       268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  307 (510)
                      |++++++        +|....+++++|.+|...|++++|+
T Consensus         2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            6778887        6888999999999999999999986

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.94  E-value=0.0027  Score=35.83  Aligned_cols=30  Identities=17%  Similarity=0.406  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      +.+++++|.+|..+|++++|+.+|++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357899999999999999999999999997

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.93  E-value=0.0025  Score=35.96  Aligned_cols=30  Identities=23%  Similarity=0.256  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      .++.++|.+|..+|++++|+.+|++++++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            578999999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.29  Score=43.53  Aligned_cols=260  Identities=12%  Similarity=0.061  Sum_probs=163.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhhhhcCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      +.+++.+..+.+.|+..+-..+.+..-..+....     .+..+.....+-..... -+..+.-+.++..++++.... .
T Consensus        49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-----KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e-k  122 (411)
T KOG1463|consen   49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-----KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE-K  122 (411)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH-h
Confidence            4478888999999999988888777666655443     44555555555544433 445566777778877776541 1


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      ..-.....-..+...|...++|.+|+......+.-.++.  .+.+....++..-..+|....+..+|...+..|......
T Consensus       123 RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana  200 (411)
T KOG1463|consen  123 RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA  200 (411)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc
Confidence            111122334578889999999999999999988888776  344556667777788999999999999888887766554


Q ss_pred             hcCCCCcchHHH-HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446          278 NRGTESADLVLP-LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (510)
Q Consensus       278 ~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (510)
                      ...  +|..-.. -..-|..+....+|.-|..||-+|.+-+...  .++.....++-.+-.+-...+..++--.++..=.
T Consensus       201 iYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~  276 (411)
T KOG1463|consen  201 IYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL  276 (411)
T ss_pred             ccc--CHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence            442  2222222 2233556666789999999999999877554  2333444444444444555666666555443322


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 010446          357 RVIKDSNYMSLDDSIMENMRIDLAELLHI--VGRGQEGRELLEE  398 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~  398 (510)
                      .+.-    .+++    ..+...+|..+.+  ..+|+.|+.-|..
T Consensus       277 ~l~y----~g~~----i~AmkavAeA~~nRSLkdF~~AL~~yk~  312 (411)
T KOG1463|consen  277 ALKY----AGRD----IDAMKAVAEAFGNRSLKDFEKALADYKK  312 (411)
T ss_pred             HHhc----cCcc----hHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence            2211    1222    2344556666654  2345555555544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.28  Score=43.02  Aligned_cols=131  Identities=18%  Similarity=0.141  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ...+..+......|++.+|...+..++..          .++...+...++.+|...|+.+.|...+...-.-..     
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~----------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-----  199 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQA----------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-----  199 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHh----------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-----
Confidence            33566778889999999999999999988          666788899999999999999999998876322110     


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                       ......+......+.+.....+....-.++ .        .+|.....-+.+|..+...|+.++|.+.+-..+..
T Consensus       200 -~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         200 -DKAAHGLQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             -hhHHHHHHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             011110111112222222222222222211 1        23555677788999999999999999887666554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.77  E-value=0.0039  Score=35.08  Aligned_cols=30  Identities=27%  Similarity=0.266  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      .++..+|.++..+|++++|+.+|++++++.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            567899999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.74  E-value=0.032  Score=44.81  Aligned_cols=77  Identities=16%  Similarity=0.189  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC----CHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENY---EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG----RAKKAVEIYHRVI  272 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al  272 (510)
                      |..+..+++.|..+..+.++   .++..+++.++..++..+.- +|....+++++|.+|...+    +..+|..+|++|.
T Consensus        22 P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~  100 (186)
T PF06552_consen   22 PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT  100 (186)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            44456678888887777655   34666666666655543221 3667788999999998764    4556777777777


Q ss_pred             HHHHH
Q 010446          273 TILEL  277 (510)
Q Consensus       273 ~~~~~  277 (510)
                      +.+++
T Consensus       101 ~~Fqk  105 (186)
T PF06552_consen  101 EYFQK  105 (186)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.70  E-value=0.0052  Score=34.56  Aligned_cols=29  Identities=10%  Similarity=0.340  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .++..+|.++...|++++|+.++++++++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            56889999999999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.69  E-value=0.63  Score=46.46  Aligned_cols=252  Identities=17%  Similarity=0.070  Sum_probs=146.8

Q ss_pred             hHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 010446          178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST-----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA  252 (510)
Q Consensus       178 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  252 (510)
                      ...|..+++.+....         .......+|.+|..     ..+.+.|+.+++.+.+.+.+...   .....+.+.+|
T Consensus       228 ~~~a~~~~~~~a~~g---------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~---~~~~~a~~~lg  295 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT---KGLPPAQYGLG  295 (552)
T ss_pred             hhHHHHHHHHHHhhc---------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh---hcCCccccHHH
Confidence            456777776654432         12234666666654     36899999999999873211100   11233577888


Q ss_pred             HHHhhcC-----CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHcCCC
Q 010446          253 KVLGSIG-----RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       253 ~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      .+|....     +++.|..++.++-+.          ....+.+.+|.++....   +...|..+|..|...       .
T Consensus       296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G  358 (552)
T KOG1550|consen  296 RLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------G  358 (552)
T ss_pred             HHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-------C
Confidence            8888743     678899999988765          23467788898887665   567899999888763       2


Q ss_pred             ChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEEC  399 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  399 (510)
                      +   ..++..++.+|..    .-+...|..+++++.+..         ++.   +...++..+... ++++.+.-.+...
T Consensus       359 ~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g---------~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~  423 (552)
T KOG1550|consen  359 H---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG---------NPS---AAYLLGAFYEYGVGRYDTALALYLYL  423 (552)
T ss_pred             C---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc---------Chh---hHHHHHHHHHHccccccHHHHHHHHH
Confidence            2   3566777777764    347889999999988762         111   113333333322 7777766665554


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhc----C
Q 010446          400 LLITEKYKGKEHPSFVTHLLNLAASYSRS----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----N  471 (510)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g  471 (510)
                      .+..-+.    .......+..........    .+...+...+.++..          .....+...+|.+|..-    .
T Consensus       424 a~~g~~~----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~  489 (552)
T KOG1550|consen  424 AELGYEV----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGR  489 (552)
T ss_pred             HHhhhhH----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCC
Confidence            4432221    011111111111111111    244555555555443          12234557777777654    3


Q ss_pred             ChHHHHHHHHHHHHHH
Q 010446          472 RDKEAEKLVLEALYIR  487 (510)
Q Consensus       472 ~~~~A~~~~~~al~~~  487 (510)
                      +++.|...|..+..-.
T Consensus       490 d~~~a~~~y~~a~~~~  505 (552)
T KOG1550|consen  490 DPEKAAAQYARASEQG  505 (552)
T ss_pred             ChHHHHHHHHHHHHhh
Confidence            5778888887776543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.67  E-value=0.038  Score=49.64  Aligned_cols=134  Identities=11%  Similarity=0.152  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCC
Q 010446          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSL  367 (510)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  367 (510)
                      +|..+.....+.+..+.|...|.+|++        .......+|...|.+-.. .++.+.|...|+.+++.+..      
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------   68 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS------   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------
Confidence            345555666666778999999999974        222334567777888666 56666699999999988532      


Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (510)
                       ..   ..+......+...|+.+.|..+|++++....     .......+|......-...|+.+......+++.+..
T Consensus        69 -~~---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~-----~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   69 -DP---DFWLEYLDFLIKLNDINNARALFERAISSLP-----KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             --H---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS-----CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             -CH---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence             32   3345566888899999999999999876421     111134577777888888899999999988888764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.71  Score=44.85  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .+++.+...++..+|..++++|...+.....    ...+...+.....++.||....+.+.|.++++++.+..       
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------  424 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------  424 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccc----hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence            3778888899999999999999998876432    22244557788999999999999999999999987654       


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (510)
                      |...-....+-......|.-++|+...........
T Consensus       425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            22222234455566677888999998887776543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.63  E-value=0.31  Score=47.20  Aligned_cols=189  Identities=16%  Similarity=0.151  Sum_probs=109.5

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010446          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (510)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (510)
                      .++..+...|++.+|.++|.+.-.-.+.+.   -....-.+..+.-+...|..++-..+.++-.+.....   +.|..  
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlE---myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---kePka--  708 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALE---MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---KEPKA--  708 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHH---HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---CCcHH--
Confidence            467777788999999998876322111100   0000113556666777777777666666555544433   22322  


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHH------HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIY------HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                          -|..+...|+.++|+...      +-++++.++..    ......+..++..+.....+.-|.+.|.+.-++    
T Consensus       709 ----AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----  776 (1081)
T KOG1538|consen  709 ----AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----  776 (1081)
T ss_pred             ----HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH----
Confidence                366778889999888753      34455544431    122344555566666666666666666544221    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (510)
                                  ..+..++...+++++|..+.++--+.             ...++...|+.+.+..++++|.+.|.+|-
T Consensus       777 ------------ksiVqlHve~~~W~eAFalAe~hPe~-------------~~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  777 ------------KSLVQLHVETQRWDEAFALAEKHPEF-------------KDDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             ------------HHHhhheeecccchHhHhhhhhCccc-------------cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence                        22345567788888887766553222             23345667777777778888877776653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.58  E-value=0.0057  Score=34.41  Aligned_cols=31  Identities=23%  Similarity=0.169  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010446          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (510)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  488 (510)
                      .++..+|.+|..+|++++|..+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5688999999999999999999999999863

...

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.8  Score=43.69  Aligned_cols=227  Identities=12%  Similarity=0.042  Sum_probs=135.9

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      .|..+..+..-+..+...|+.+.|+..++......-     ..-..-.++.+|.++..+.+|..|-..+....+...   
T Consensus       263 ~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~-----kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd---  334 (546)
T KOG3783|consen  263 YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRM-----KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD---  334 (546)
T ss_pred             CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh---
Confidence            445555666777788888888888888877665211     122344578899999999999999999888766521   


Q ss_pred             CCCChhHHHHHHHHH-HHH--------hhcCCHHHHHHHHHHHHHHHHHhcCCCCcc--------------------h--
Q 010446          238 GKTSILLVTSLLGMA-KVL--------GSIGRAKKAVEIYHRVITILELNRGTESAD--------------------L--  286 (510)
Q Consensus       238 ~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------------~--  286 (510)
                          -..+ .|..++ .++        ...|+-++|..+.+...++..... .+.|.                    .  
T Consensus       335 ----WS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~-K~~P~E~f~~RKverf~~~~~~~~~~~l  408 (546)
T KOG3783|consen  335 ----WSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAG-KNLPLEKFIVRKVERFVKRGPLNASILL  408 (546)
T ss_pred             ----hhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhcc-ccCchhHHHHHHHHHHhccccccccccc
Confidence                1111 122222 222        224566666666666555544311 11110                    0  


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010446          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (510)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (510)
                      +..+..++.++..-.+  -+..-..++..-.+..--.+..+..--+..+|.++..+|+...|..+|..+.+.....   .
T Consensus       409 a~P~~El~Y~Wngf~~--~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~---~  483 (546)
T KOG3783|consen  409 ASPYYELAYFWNGFSR--MSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR---T  483 (546)
T ss_pred             cchHHHHHHHHhhccc--CChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---c
Confidence            0012233322221111  1111111222222211112333455567788999999999999999999988664432   4


Q ss_pred             CCChHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Q 010446          367 LDDSIMENMRIDLAELLHIVGR-GQEGRELLEECLLIT  403 (510)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~  403 (510)
                      .++-....+++.+|.++..+|. ..++..++.+|-+..
T Consensus       484 ~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  484 EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            5566667788999999999998 999999999987653

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.1  Score=45.61  Aligned_cols=149  Identities=21%  Similarity=0.199  Sum_probs=89.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010446          334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS  413 (510)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  413 (510)
                      .-+.-....|++.+|...+..++....+       .   ..+...++.+|...|+.+.|...+...-.-.       ...
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~-------~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------~~~  201 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQAAPE-------N---SEAKLLLAECLLAAGDVEAAQAILAALPLQA-------QDK  201 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHhCcc-------c---chHHHHHHHHHHHcCChHHHHHHHHhCcccc-------hhh
Confidence            3455677889999999999999988432       2   3345779999999999999998876521111       001


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010446          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (510)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  493 (510)
                      ....+......+.+.....+....-++.-         .+|+.......+|..+...|+.++|.+.+-..++.-. .+.+
T Consensus       202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~a---------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-~~~d  271 (304)
T COG3118         202 AAHGLQAQIELLEQAAATPEIQDLQRRLA---------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-GFED  271 (304)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccC
Confidence            11111111122222222222222222221         2566667778999999999999999887766655322 2233


Q ss_pred             CCcchhHHHHhhccCC
Q 010446          494 DSLPGKLLTVWSLFRP  509 (510)
Q Consensus       494 ~~~~~~~~~~~~l~~~  509 (510)
                      +.....+..+.++++|
T Consensus       272 ~~~Rk~lle~f~~~g~  287 (304)
T COG3118         272 GEARKTLLELFEAFGP  287 (304)
T ss_pred             cHHHHHHHHHHHhcCC
Confidence            3345556666666665

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.46  E-value=0.072  Score=36.12  Aligned_cols=70  Identities=9%  Similarity=0.067  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (510)
                      ..-++.+..++...+..+|+..++++++.       ..+.++.-.++..+..+|...|+|++++.+...-+.+...+
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k-------~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el   76 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEK-------ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL   76 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhh-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34566777788999999999999999987       44467778888899999999999999999987777766554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.44  E-value=0.096  Score=47.09  Aligned_cols=134  Identities=10%  Similarity=0.096  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      +|..+.....+.+..+.|...|.+|++        .......+|...|.+-.. .++.+.|...|+.+++.+.     .+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~   69 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SD   69 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CC
Confidence            344555666666678899999999863        233445778888888666 5666669999999998651     22


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (510)
                      +   ..+......+...|+.+.|..+|++++...       +.......+|......-...|+.+....+.+++.+..
T Consensus        70 ~---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   70 P---DFWLEYLDFLIKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             H---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             H---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            3   344445577888999999999999998652       1112134466777888888999999999888887764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.40  E-value=0.01  Score=33.33  Aligned_cols=30  Identities=13%  Similarity=0.419  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      .++..+|.+|...|++++|..++++++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            578899999999999999999999999874

...

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.15  E-value=1.2  Score=41.80  Aligned_cols=130  Identities=18%  Similarity=0.153  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHH
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK-IYTKV  320 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~  320 (510)
                      ...+..+...+.+....|+++.|...+.++......    .......+....+.+....|+..+|+..++..+. .....
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~  218 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN  218 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence            466788999999999999999999999887764211    1122455667778999999999999999988887 22221


Q ss_pred             c-------------------------CCCChHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446          321 Y-------------------------GENDGRVGMAMCSLAHAKCAN------GNAEEAVELYKKALRVIKDSNYMSLDD  369 (510)
Q Consensus       321 ~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (510)
                      .                         .......+.++..+|......      +..+++...|.++....+.        
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------  290 (352)
T PF02259_consen  219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS--------  290 (352)
T ss_pred             cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh--------
Confidence            0                         011223556677777777777      8888999999999887332        


Q ss_pred             hHHHHHHHHHHHHHHH
Q 010446          370 SIMENMRIDLAELLHI  385 (510)
Q Consensus       370 ~~~~~~~~~la~~~~~  385 (510)
                        ....+..+|..+..
T Consensus       291 --~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  291 --WEKAWHSWALFNDK  304 (352)
T ss_pred             --HHHHHHHHHHHHHH
Confidence              23455666666544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.14  E-value=0.02  Score=32.87  Aligned_cols=36  Identities=19%  Similarity=-0.065  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010446          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (510)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  493 (510)
                      .++..||.+-...++|++|..-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            467889999999999999999999999999998765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.75  E-value=0.28  Score=33.34  Aligned_cols=66  Identities=18%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010446          334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (510)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (510)
                      .-|.-++...+.++|+..++++++..       .+++....++..+..+|...|++.+.+.+..+=+.+..+.
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~-------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el   76 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKI-------TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL   76 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33444567889999999999999873       4566777888999999999999999999988888877665

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.71  E-value=0.83  Score=36.58  Aligned_cols=96  Identities=15%  Similarity=0.105  Sum_probs=46.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCCh
Q 010446          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (510)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (510)
                      ...+.+....|+...|+..|.++-.-.      ..|...  .+...-+.++...|-|++-....+.       .-++.+|
T Consensus        98 mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-------La~d~n~  164 (221)
T COG4649          98 MRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-------LAGDGNP  164 (221)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHHHhhh-------ccCCCCh
Confidence            445566666666666666665543210      111111  1222334445555555544433221       1234445


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                      ....+...||..-++.|++.+|..+|.+...
T Consensus       165 mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            5555555566666666666666666655443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.63  E-value=1.5  Score=41.00  Aligned_cols=152  Identities=14%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh----c-----C------------CCChhHHHHHHHHHHHHhh
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR----Y-----G------------KTSILLVTSLLGMAKVLGS  257 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~-----~------------~~~~~~~~~~~~la~~~~~  257 (510)
                      .|....++..++.++..+|+...|.++.++|+-.++..    +     .            ..+.....++........+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            36667779999999999999999999999998776633    2     0            1123456677788888999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 010446          258 IGRAKKAVEIYHRVITILELNRGTE-SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA  336 (510)
Q Consensus       258 ~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  336 (510)
                      .|-+..|.++.+-.+.+     ++. +|  ..++..+-....+.++++--+++++.......+.   .........+.++
T Consensus       116 RG~~rTAlE~~KlLlsL-----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~a  185 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSL-----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIA  185 (360)
T ss_pred             cCcHHHHHHHHHHHHhc-----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHH
Confidence            99999999999988877     222 22  3344445555567788876666666544421100   0001123345567


Q ss_pred             HHHHHCCCH---------------HHHHHHHHHHHHHHH
Q 010446          337 HAKCANGNA---------------EEAVELYKKALRVIK  360 (510)
Q Consensus       337 ~~~~~~g~~---------------~~A~~~~~~al~~~~  360 (510)
                      .++...++.               ++|...+.+|+..+.
T Consensus       186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP  224 (360)
T PF04910_consen  186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP  224 (360)
T ss_pred             HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence            777777777               899999999998754

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.60  E-value=1.8  Score=40.42  Aligned_cols=156  Identities=13%  Similarity=0.094  Sum_probs=105.9

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------------ccCCCCChHHHHHHHHHHHHHH
Q 010446          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------------NYMSLDDSIMENMRIDLAELLH  384 (510)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~  384 (510)
                      .+|..+.++..++.++..+|+.+.|.+++++|+-.++..                   ....+.+.....++......+.
T Consensus        35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~  114 (360)
T PF04910_consen   35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG  114 (360)
T ss_pred             HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence            357778899999999999999999999999998666532                   0112233444556677888899


Q ss_pred             HcCChHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHH
Q 010446          385 IVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL  463 (510)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  463 (510)
                      +.|-+..|.++.+-.+.+.     +. +|.  .++..+=....+.++++--++.++.......+.   .........+..
T Consensus       115 ~RG~~rTAlE~~KlLlsLd-----p~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~  184 (360)
T PF04910_consen  115 RRGCWRTALEWCKLLLSLD-----PDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI  184 (360)
T ss_pred             hcCcHHHHHHHHHHHHhcC-----CCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence            9999999999988777653     22 332  334444455567788877777776554421100   000112334677


Q ss_pred             HHHHHhcCCh---------------HHHHHHHHHHHHHHHH
Q 010446          464 GITLYHLNRD---------------KEAEKLVLEALYIREI  489 (510)
Q Consensus       464 a~~~~~~g~~---------------~~A~~~~~~al~~~~~  489 (510)
                      +.++...++.               ++|...+++|+..+..
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            7888888888               8999999999876543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.59  E-value=0.026  Score=52.45  Aligned_cols=95  Identities=16%  Similarity=0.097  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +-+.+..++...+|+.|+..|.+++++          +|..+..+.+.+..+...+++..|+.-+.++++..       |
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~l----------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-------P   69 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIEL----------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-------P   69 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhc----------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-------c
Confidence            445777888999999999999999998          88888888888999999999999999998888654       8


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      ....+|+.-|.+....+++.+|...|+....+
T Consensus        70 ~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   70 TYIKAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             hhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            88888999999999999999999999888765

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.48  E-value=1.9  Score=39.14  Aligned_cols=181  Identities=15%  Similarity=0.119  Sum_probs=119.4

Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (510)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (510)
                      ....+++..|...+.++-..          ........++.+|...    .+..+|..+|+.+.+          .....
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~  110 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAE  110 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHH
Confidence            34567788888888777552          1125666777777653    457778888885543          22345


Q ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-------ChHHHHHHHHHH
Q 010446          331 AMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------RGQEGRELLEEC  399 (510)
Q Consensus       331 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a  399 (510)
                      +..++|.+|..    ..+..+|..+|+++...       +..+.  ..+...++..|..-+       +...|...|.++
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a  181 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA  181 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence            67778988887    44899999999999876       22221  223466777776642       223677777776


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcC----
Q 010446          400 LLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN----  471 (510)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----  471 (510)
                      ....          ...+...+|.+|..    ..++.+|..+|.++.+.       .+   ......++ ++...|    
T Consensus       182 a~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g~g~~  240 (292)
T COG0790         182 AELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNGEGVK  240 (292)
T ss_pred             HHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcCCCch
Confidence            5532          34567788888865    34889999999999872       22   45667777 666665    


Q ss_pred             -----------ChHHHHHHHHHHHH
Q 010446          472 -----------RDKEAEKLVLEALY  485 (510)
Q Consensus       472 -----------~~~~A~~~~~~al~  485 (510)
                                 +...|..++..+..
T Consensus       241 ~~~~~~~~~~~~~~~a~~~~~~~~~  265 (292)
T COG0790         241 KAAFLTAAKEEDKKQALEWLQKACE  265 (292)
T ss_pred             hhhhcccccCCCHHHHHHHHHHHHH
Confidence                       66677777766654

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.47  E-value=0.05  Score=31.27  Aligned_cols=36  Identities=19%  Similarity=0.141  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (510)
                      .++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            467889999999999999999999999998876543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.42  E-value=0.043  Score=51.10  Aligned_cols=94  Identities=15%  Similarity=0.047  Sum_probs=82.0

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (510)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (510)
                      -+-+.....-+.|+.|+..|.+|+++        +|..+..+.+.+..+...+++..|+.-+.++++.        +|..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~   71 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY   71 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence            34566777889999999999999998        6667777888889999999999999999999984        5888


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          329 GMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ..+|..-|..+...+++.+|...|+....+
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            889999999999999999999999888776

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.36  E-value=2.7  Score=40.25  Aligned_cols=62  Identities=5%  Similarity=-0.121  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHh
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI  191 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  191 (510)
                      ..+...++.+..+ -+++..+.|++.+..          -|..+.+|.......+...+|+..+.+|.+++.-
T Consensus        21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~----------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   21 DSWSQLIREAQTQ-PIDKVRETYEQLVNV----------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHhcc----------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3344455555444 889999999988765          6666777877788888899999999999887653

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.28  E-value=2.2  Score=38.71  Aligned_cols=167  Identities=17%  Similarity=0.156  Sum_probs=108.7

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----hCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      ....+++..|...+..+-..            ..+.....++.+|..    ..+..+|..+++.+...         ...
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~------------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------g~~  109 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL------------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------GLA  109 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc------------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc---------ccH
Confidence            34566777777777766531            112455666666654    34677888888854321         223


Q ss_pred             HHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC-------CHHHHHHHHHHHH
Q 010446          204 AILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-------RAKKAVEIYHRVI  272 (510)
Q Consensus       204 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al  272 (510)
                      ...+.+|.+|..    ..++.+|..+|+++.+.-       ++.-..+...++..|..-+       +...|...|.++-
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa  182 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA  182 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence            346778888877    458999999999998752       2221344667777776642       2236777777776


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC
Q 010446          273 TILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (510)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (510)
                      ...          ...+...+|.+|..    ..++.+|..+|.++-+.       .+   ......++ ++...|
T Consensus       183 ~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         183 ELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             Hhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence            542          45778888988855    34789999999999874       22   45667777 555555

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=95.22  E-value=1.9  Score=37.52  Aligned_cols=185  Identities=11%  Similarity=0.070  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      .++.+++..-+.|+|++.+.+..+++...         ......-.+.++.+|- ..|....+...+.........  ..
T Consensus         3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~---------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~--~~   71 (236)
T PF00244_consen    3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN---------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN--KG   71 (236)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHTS---------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccC---------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc--cc
Confidence            35668888899999999999999988761         2222333444555552 345555555555444333322  11


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC--Ch-hHHHHHHHHHHHHhhc-----C-----CHHHHH
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT--SI-LLVTSLLGMAKVLGSI-----G-----RAKKAV  265 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~-~~~~~~~~la~~~~~~-----g-----~~~~A~  265 (510)
                      .+....    +..-| +..=-++=...+..++.+....+-+.  ++ ..+-.+...|..|...     |     -.++|.
T Consensus        72 ~~~~~~----~i~~y-k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~  146 (236)
T PF00244_consen   72 NEKQVK----LIKDY-KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL  146 (236)
T ss_dssp             THHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             hhHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence            121111    11111 11111223444555555554432221  12 2222233344444322     2     237899


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHH
Q 010446          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      ..|++|+++.....++.+|.......+.+..|+ ..|+.++|....+++++.....
T Consensus       147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~  202 (236)
T PF00244_consen  147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE  202 (236)
T ss_dssp             HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred             HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            999999999999777888877777777776664 5899999999999988765443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=2.7  Score=38.99  Aligned_cols=198  Identities=14%  Similarity=0.017  Sum_probs=132.9

Q ss_pred             CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (510)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (510)
                      .+-....+....-+.++....++..|...+.+..-...+  +........++..++.++...+..-.+..+.-.++....
T Consensus       267 ~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~s  344 (482)
T KOG4322|consen  267 GDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRS  344 (482)
T ss_pred             chHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            343455667777899999999999999998887654432  223345566777888888888888888888888777665


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHHHHHcCChHHHHHH
Q 010446          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD---SIMENMRIDLAELLHIVGRGQEGREL  395 (510)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~  395 (510)
                      +..  .+...+.+-.+++..+...|..+.|...+..++....-.++.....   ...+.++..-+..+ ...+.+.+..+
T Consensus       345 ey~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~  421 (482)
T KOG4322|consen  345 EYS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRY  421 (482)
T ss_pred             Hhc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHH
Confidence            541  2233445566788889999999999999999987765431111110   00111111111112 45667888888


Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHH---HHHHHHHHHHH
Q 010446          396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV---EAERLLRICLD  443 (510)
Q Consensus       396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~  443 (510)
                      ++++-.+..+.  .-+.....+.+.++..|...|+.+   ++...|+++..
T Consensus       422 L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  422 LDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            88888887776  246667788889999999999865   45555666554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.05  E-value=0.33  Score=38.53  Aligned_cols=91  Identities=15%  Similarity=0.022  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (510)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (510)
                      +....+..+++....-...++.+++..++...-.+          .|..+..-..-|..++..|+|.+|+.+++.+....
T Consensus         5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL----------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen    5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL----------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            34455666788888888899999999988876655          88888888999999999999999999999865432


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhhhcHH
Q 010446          193 DSLKDDEPLLDAILLHMGSMYSTLENYE  220 (510)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~  220 (510)
                             +....+--.++.|+..+|+.+
T Consensus        75 -------~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   75 -------PGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             -------CCChHHHHHHHHHHHHcCChH
Confidence                   322323345677777776653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.01  E-value=0.042  Score=30.41  Aligned_cols=29  Identities=17%  Similarity=0.165  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          459 PMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      +++.+|.++...|++++|...|++.++.+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            57899999999999999999999998754

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.93  E-value=0.017  Score=51.05  Aligned_cols=96  Identities=14%  Similarity=0.038  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      ..-..+...+..|.+++|++.+..++.+          .|..+..+...+.++..+++...|++-+..++.+.       
T Consensus       116 e~k~~A~eAln~G~~~~ai~~~t~ai~l----------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-------  178 (377)
T KOG1308|consen  116 DKKVQASEALNDGEFDTAIELFTSAIEL----------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-------  178 (377)
T ss_pred             HHHHHHHHHhcCcchhhhhccccccccc----------CCchhhhcccccceeeeccCCchhhhhhhhhhccC-------
Confidence            4445667788999999999999999988          88899999999999999999999999999988775       


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      ++.+.-|-..|.....+|++.+|...+..+.++
T Consensus       179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             cccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            444444566677778899999999999998875

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.81  E-value=2.6  Score=37.08  Aligned_cols=188  Identities=15%  Similarity=0.069  Sum_probs=111.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC---C-------hHHHHHHHHHHHHHHHCC--------------CHH
Q 010446          291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN---D-------GRVGMAMCSLAHAKCANG--------------NAE  346 (510)
Q Consensus       291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~~  346 (510)
                      +.+..++...|+..+|+.-+++=+..++...++.   .       ...+.-+..+|++.....              -+.
T Consensus        14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~   93 (247)
T PF11817_consen   14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ   93 (247)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence            4567889999999999999999888887775541   1       112233444555544432              123


Q ss_pred             HHHHHHHHHHHHHHhhccCCCC-------------------ChHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHh
Q 010446          347 EAVELYKKALRVIKDSNYMSLD-------------------DSIMENMRIDLAEL-LHIVGRGQEGRELLEECLLITEKY  406 (510)
Q Consensus       347 ~A~~~~~~al~~~~~~~~~~~~-------------------~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~  406 (510)
                      .|-.+...--+...... ..|+                   .+.-... ..+... ..........++++++|+..+...
T Consensus        94 ~AA~~~~~Rr~~a~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~  171 (247)
T PF11817_consen   94 IAAKHAVERRKLAEAIP-PDPDSSPASSVVPSFYGYDTYSLPPSPHEE-YPLLQSEEKGVDHSKLIIELLEKAYEQFKKY  171 (247)
T ss_pred             HHHHHHHHHHHHHHhcc-CCCCCCchhhccchhhcccccccCchhHHH-HHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence            33333332223333220 0011                   0000000 001110 111223346688888888887765


Q ss_pred             hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010446          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (510)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  484 (510)
                      .  .......+...+|.-|...|++++|..+|+.+...+++-  .-..-...++..+..|+...|+.+..+.+.-+.+
T Consensus       172 ~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  172 G--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             c--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3  234455667789999999999999999999997766542  2234455677889999999999888777655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.64  E-value=0.081  Score=29.21  Aligned_cols=29  Identities=24%  Similarity=0.528  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          205 ILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      +++.+|.++...|++++|...|++.++.+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            57899999999999999999999998753

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.44  E-value=4  Score=37.59  Aligned_cols=149  Identities=13%  Similarity=0.064  Sum_probs=93.5

Q ss_pred             CCcchHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHH
Q 010446          282 ESADLVLPLFSLGSLFIKEGK------------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  349 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  349 (510)
                      .+|....++..+....-..-.            .+.-+.++++|++.        +|.....+..+-....+..+.++..
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            356667777666654433322            23445556666653        2333333333334445666777777


Q ss_pred             HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC----------ChhHHHHHH
Q 010446          350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----------HPSFVTHLL  419 (510)
Q Consensus       350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~  419 (510)
                      +-+++++..       .+....+...|...-..-...-.++.....|.+++..........          ......++.
T Consensus        86 ~~we~~l~~-------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~  158 (321)
T PF08424_consen   86 KKWEELLFK-------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL  158 (321)
T ss_pred             HHHHHHHHH-------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence            778887776       344555544444444444445568899999999998776554322          234456677


Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446          420 NLAASYSRSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~  445 (510)
                      .+.......|..+.|+..++-.+++.
T Consensus       159 r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  159 RLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            78888899999999999999998863

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.17  E-value=2.8  Score=34.81  Aligned_cols=78  Identities=13%  Similarity=0.108  Sum_probs=54.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (510)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (510)
                      .-++|...|.++-       +......+.....+|..|. ..+.++|+.++.+++++...    +.......+..|+.++
T Consensus       121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~  188 (203)
T PF11207_consen  121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIY  188 (203)
T ss_pred             CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHH
Confidence            3455666555442       2233355677778887776 67899999999999988533    3344567888899999


Q ss_pred             HHcCChHHHH
Q 010446          298 IKEGKAVDAE  307 (510)
Q Consensus       298 ~~~g~~~~A~  307 (510)
                      ...|+++.|-
T Consensus       189 ~~~~~~e~AY  198 (203)
T PF11207_consen  189 QKLKNYEQAY  198 (203)
T ss_pred             HHhcchhhhh
Confidence            9999998874

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.16  E-value=5.6  Score=38.17  Aligned_cols=179  Identities=13%  Similarity=0.053  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcH-------HHHHHHHHHHHHHHHH
Q 010446          163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENY-------EKSMLVYQRVINVLES  235 (510)
Q Consensus       163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~  235 (510)
                      .....+|..++..|||+-|...|+.+.+-+.. .......+.++...|.+....+..       ++...+++.|...+.+
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~  287 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK  287 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence            34678999999999999999999998876532 122223455555666666666533       3777888888887766


Q ss_pred             hcC---CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHHH--HHcCChHHHH
Q 010446          236 RYG---KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD---LVLPLFSLGSLF--IKEGKAVDAE  307 (510)
Q Consensus       236 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A~  307 (510)
                      ...   .......++....+.++...|.+.+|...+-+.....-.    +...   .+..+-.+|.+|  ..........
T Consensus       288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~~  363 (414)
T PF12739_consen  288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPGL  363 (414)
T ss_pred             hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCccc
Confidence            211   111244567777888888999998888777666654210    1111   344455556555  1110000000


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                      ..               ....+.-+..-|.-|...|+...|..+|.+++..+..
T Consensus       364 ~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  364 TR---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             hh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence            00               1112233344467899999999999999999998764

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.13  E-value=5.8  Score=38.20  Aligned_cols=254  Identities=17%  Similarity=0.111  Sum_probs=145.7

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 010446          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (510)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (510)
                      ....+...++++.  +...+++.......    |..+.....-+..+...|+.+.|+..++.+++..-+      .-...
T Consensus       237 ~~~~~~~~p~~d~--~~~~~~Ll~~~~~~----p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l  304 (546)
T KOG3783|consen  237 FISFVLGTPNPDG--EECEKALKKYRKRY----PKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSL  304 (546)
T ss_pred             HHHHHcCCCCccH--HHHHHHhHHHHHhC----CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHH
Confidence            3334444455554  44444444444432    223444566788888888888889998888772211      11245


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH-HHH--------HHCCCHHHHHHHHHHHHHHH
Q 010446          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAK--------CANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~~~  359 (510)
                      .+..+|.++..+.+|..|-..+....+..        ...-..|..++ -++        ...|+-++|..+++......
T Consensus       305 ~~fE~aw~~v~~~~~~~aad~~~~L~des--------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~  376 (546)
T KOG3783|consen  305 MVFERAWLSVGQHQYSRAADSFDLLRDES--------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELL  376 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhh--------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHH
Confidence            67788999999999999998888776642        11112222233 222        22456777777766666555


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCC---------------------hHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGR---------------------GQEGRELLEECLLITEKYKGKEHPSFVTHL  418 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  418 (510)
                      ...   +.+.|.-. ....-+.-+...+.                     -.-+..-.+++........-.+..+....+
T Consensus       377 ~~a---~K~~P~E~-f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~  452 (546)
T KOG3783|consen  377 ANA---GKNLPLEK-FIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKY  452 (546)
T ss_pred             Hhc---cccCchhH-HHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHH
Confidence            442   11111110 00112222222221                     000000011111111111111233444566


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Q 010446          419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIR  487 (510)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~  487 (510)
                      ..+|.++...|+...|..+|...++- ......++.-...+++.+|..|..+|. ..++..++.+|.+..
T Consensus       453 lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  453 LLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            77899999999999999999988864 222234555667789999999999998 999999999997755

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.04  E-value=0.048  Score=48.41  Aligned_cols=89  Identities=20%  Similarity=0.137  Sum_probs=77.3

Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 010446          254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC  333 (510)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  333 (510)
                      -....|.+++|++++..++++        +|..+..+...+.++..+++...|+.-+..++++        +++.+..|-
T Consensus       123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk  186 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK  186 (377)
T ss_pred             HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence            344578899999999999987        6778888999999999999999999999999985        466666777


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          334 SLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       334 ~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ..+.....+|++++|...+..+.++
T Consensus       187 frg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  187 FRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             hhhHHHHHhhchHHHHHHHHHHHhc
Confidence            7788888999999999999999877

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.88  E-value=0.84  Score=32.61  Aligned_cols=36  Identities=11%  Similarity=-0.018  Sum_probs=29.6

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (510)
                      +|....+.+.++..+...|++++|+..+-.++....
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr   53 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR   53 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            888889999999999999999999999887776543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.77  E-value=2  Score=31.69  Aligned_cols=100  Identities=11%  Similarity=0.100  Sum_probs=55.6

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh----CChHHHHHHHHHHHHhhhhcCCCc
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI----GDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .+..++..|++-+|+++.+..+..       ..++......+..-|.++..+    .|.+-=..++.-+++-......-.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~-------h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls   74 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISR-------HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS   74 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHH-------ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence            467789999999999999988765       222333335566667776543    333333334444444333322333


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVI  230 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  230 (510)
                      |.-+..++.+|.-+-....|+++..-.++++
T Consensus        75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~L  105 (111)
T PF04781_consen   75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGL  105 (111)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            5555556666655444444444444444444

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=93.70  E-value=6.9  Score=37.59  Aligned_cols=178  Identities=13%  Similarity=0.017  Sum_probs=109.4

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHH
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-------VDAESVFSRILKIYTK  319 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~  319 (510)
                      ....+|+.++..|+|+-|...|+.+.+-+....  .....+.+....|.+....+..       ++...+++.|+..+.+
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~  287 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK  287 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence            466799999999999999999998887654311  1233445555666666666543       4778888988888877


Q ss_pred             HcC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HhhccCCCCChHHHHHHHHHHHHH--HHcCChHHH
Q 010446          320 VYG---ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI--KDSNYMSLDDSIMENMRIDLAELL--HIVGRGQEG  392 (510)
Q Consensus       320 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A  392 (510)
                      ...   ........+....+.++...|.+.+|...+-+.....  ...     .....+.++..+|.++  ........-
T Consensus       288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l-----~~~~~alllE~~a~~~~~~~~~~~~~~  362 (414)
T PF12739_consen  288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL-----RPFGSALLLEQAAYCYASLRSNRPSPG  362 (414)
T ss_pred             hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh-----hhHhhHHHHHHHHHhhcccccCCCCcc
Confidence            311   1122455566777888888999888877766665542  111     0000233444555555  111000000


Q ss_pred             HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 010446          393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  446 (510)
Q Consensus       393 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  446 (510)
                      ..-               ....+.-+..-|.-|...|+...|..+|.+++.++.
T Consensus       363 ~~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  363 LTR---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             chh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence            000               111222233447788999999999999999999875

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.56  E-value=2  Score=34.21  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=66.5

Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      ......+..+..+-...++.+++...+.-..-+        .|.....-..-|.++...|++.+|+..++...+      
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------   72 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------   72 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence            345666777788888889999998887655443        566777778889999999999999999998654      


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHH
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAE  346 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~  346 (510)
                        ..+....+--.++.++..+|+.+
T Consensus        73 --~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   73 --RAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             --cCCCChHHHHHHHHHHHHcCChH
Confidence              33444445555777888887764

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.40  E-value=19  Score=41.63  Aligned_cols=110  Identities=18%  Similarity=0.178  Sum_probs=76.3

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (510)
                      ...++.+|...|.+....|+++.|..++-+|.+..            ...+....|..+...|+...|+..+++.+....
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r------------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR------------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc------------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            45688999999999999999999999888877652            134557899999999999999999999987654


Q ss_pred             HhhCCC---Ch------hHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHH
Q 010446          405 KYKGKE---HP------SFVTHLLNLAASYSRSKNF--VEAERLLRICLDIMT  446 (510)
Q Consensus       405 ~~~~~~---~~------~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~  446 (510)
                      ......   .|      ....+...++......|++  .+-+.+|+.+.++..
T Consensus      1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred             ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence            321111   01      1112344455555556663  344667777777543

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=93.36  E-value=4.6  Score=36.09  Aligned_cols=128  Identities=13%  Similarity=0.057  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCH
Q 010446          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (510)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (510)
                      +-+++.++-.++..|  ......++.+.|..|.+.|+-+.|++.+.+..+-.-...  ...++......+|..|..   .
T Consensus        85 ~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D---~  157 (393)
T KOG0687|consen   85 KELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLD---H  157 (393)
T ss_pred             HHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhcc---H
Confidence            334444444444332  345677889999999999999999999988776443331  234455666777777754   3


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (510)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (510)
                      +--.+..+++-.+.++    |.|..........-|.......++.+|-.+|-.++..+.
T Consensus       158 ~lV~~~iekak~liE~----GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  158 DLVTESIEKAKSLIEE----GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             HHHHHHHHHHHHHHHh----CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence            4444445555555554    666666555555567777778899999998887776543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.26  E-value=3  Score=34.70  Aligned_cols=81  Identities=17%  Similarity=0.158  Sum_probs=57.7

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 010446          257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA  336 (510)
Q Consensus       257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  336 (510)
                      ..-.-++|...|.++       .+......+.....||..|. ..+.++|+.++.+++++...    ++......+..|+
T Consensus       118 sr~~d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLa  185 (203)
T PF11207_consen  118 SRFGDQEALRRFLQL-------EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLA  185 (203)
T ss_pred             hccCcHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHH
Confidence            343345555554443       23344566788888988777 67899999999999998532    3234567788899


Q ss_pred             HHHHHCCCHHHHH
Q 010446          337 HAKCANGNAEEAV  349 (510)
Q Consensus       337 ~~~~~~g~~~~A~  349 (510)
                      .++..+|+++.|-
T Consensus       186 s~~~~~~~~e~AY  198 (203)
T PF11207_consen  186 SIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHhcchhhhh
Confidence            9999999999875

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=93.15  E-value=8.7  Score=37.09  Aligned_cols=135  Identities=11%  Similarity=0.045  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG-SLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      ++..+-..-.+..-.+.|...|.++-+.-.      .+.  .++..-| .-|...++..-|.+.|+-.+..+     ++.
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r------~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf-----~d~  434 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKKAREDKR------TRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKF-----GDS  434 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHHHhhccC------Ccc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhc-----CCC
Confidence            344444555555666677777777655311      111  2222222 22566788888998888777653     244


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (510)
                      |.....|   ...+...++-..|..+|++++..       ..+......+|..+-..-..-|+....+++=++-...+.
T Consensus       435 p~yv~~Y---ldfL~~lNdd~N~R~LFEr~l~s-------~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  435 PEYVLKY---LDFLSHLNDDNNARALFERVLTS-------VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             hHHHHHH---HHHHHHhCcchhHHHHHHHHHhc-------cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            5544443   34567788888899999998875       122333445667777777778888877777666554443

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.15  E-value=4.5  Score=35.49  Aligned_cols=132  Identities=11%  Similarity=-0.005  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 010446          262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  341 (510)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  341 (510)
                      ++-++-+.+.++-.+...  .......++.++|..|.+.++.+.+.+++.+.+.-.....  -..++..+-..+|.+|..
T Consensus        92 eeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d  167 (412)
T COG5187          92 EEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGD  167 (412)
T ss_pred             HHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhcc
Confidence            333444555555444432  2345678899999999999999999999998877554331  233455556667777765


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (510)
Q Consensus       342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (510)
                      +.-.++.++..+..++.       |.+...........|.......++.+|-.++-..+..+.
T Consensus       168 ~~vV~e~lE~~~~~iEk-------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         168 RKVVEESLEVADDIIEK-------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHHHHHHHHHHHHHHh-------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            54445444444443333       566655555555567777777888888888877766543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.10  E-value=1  Score=35.23  Aligned_cols=91  Identities=11%  Similarity=-0.072  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (510)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (510)
                      +....+..+++....-...++.+++..++...-.+          .|..+..-..-|.+++..|+|.+|+.+++....-.
T Consensus         5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL----------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561         5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVL----------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            33444555677777777799999998888766555          77778888888999999999999999998875432


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhhhcHH
Q 010446          193 DSLKDDEPLLDAILLHMGSMYSTLENYE  220 (510)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~  220 (510)
                             +.....--.++.|+..+|+.+
T Consensus        75 -------~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        75 -------GAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             -------CCchHHHHHHHHHHHhcCChH
Confidence                   121222344566666666543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.91  E-value=7.4  Score=39.63  Aligned_cols=48  Identities=17%  Similarity=0.203  Sum_probs=37.8

Q ss_pred             HHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          185 LDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      |.-|+.+++..+.+......++...|..++..|++++|...|-+++..
T Consensus       350 y~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  350 YKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            344455555555666777888899999999999999999999998765

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.76  E-value=0.38  Score=46.16  Aligned_cols=91  Identities=24%  Similarity=0.361  Sum_probs=73.0

Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 010446          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (510)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (510)
                      ..+...|+...|+.++..|+...       +......+.+||.+....|-...|-.++.+++.+.        .......
T Consensus       615 lywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~sepl~~  679 (886)
T KOG4507|consen  615 LYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSEPLTF  679 (886)
T ss_pred             ceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccCchHH
Confidence            33455799999999999998752       22334567899999999999999999999999874        1112456


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          333 CSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      +.+|..+....+.+.|++.++.|++.
T Consensus       680 ~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  680 LSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             HhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            77899999999999999999999987

>smart00028 TPR Tetratricopeptide repeats

Probab=92.75  E-value=0.17  Score=27.29  Aligned_cols=29  Identities=24%  Similarity=0.225  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          458 FPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      .++..+|.++...|++++|...+++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35688999999999999999999999874

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=92.29  E-value=0.25  Score=26.56  Aligned_cols=29  Identities=24%  Similarity=0.389  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      .++..+|.++...|++++|...+++++.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35778999999999999999999999874

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.23  E-value=1.5  Score=27.49  Aligned_cols=29  Identities=21%  Similarity=0.163  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .+++.+|..+...|+|++|..+.+.++++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            36788999999999999999999999998

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.00  E-value=2  Score=26.97  Aligned_cols=28  Identities=21%  Similarity=0.229  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      .++.+|..+.+.|+|++|..+.+.++++
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            5677899999999999999999999998

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.96  E-value=10  Score=34.99  Aligned_cols=128  Identities=12%  Similarity=0.098  Sum_probs=83.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHH
Q 010446          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMY  213 (510)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  213 (510)
                      .+.-+.++++|++.          .|.....+..+-.......+.++..+-+++++...    +..+.+-..|...-...
T Consensus        47 ~E~klsilerAL~~----------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~----~~~~~LW~~yL~~~q~~  112 (321)
T PF08424_consen   47 AERKLSILERALKH----------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN----PGSPELWREYLDFRQSN  112 (321)
T ss_pred             HHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHH
Confidence            34556677777765          45555555555555566667777777777766553    33344433333333333


Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          214 STLENYEKSMLVYQRVINVLESRYGKT----------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      ...-.++.....|.+++..........          ......++..+.......|..+.|+..++-.+++.
T Consensus       113 ~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  113 FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            344568899999999998876653332          12456667788888899999999999999998874

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.88  E-value=8.4  Score=33.91  Aligned_cols=187  Identities=12%  Similarity=0.049  Sum_probs=111.1

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC---C-------hhHHHHHHHHHHHHhhcC--------------CH
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---S-------ILLVTSLLGMAKVLGSIG--------------RA  261 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~  261 (510)
                      -+.+..++...|+..+|+.-+++=+..+....+..   .       ...+.-+..+|.+.....              -|
T Consensus        13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy   92 (247)
T PF11817_consen   13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY   92 (247)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence            35667888999999999999998888887765441   1       112233444555444332              12


Q ss_pred             HHHHHHHHHHHHHHHHhcC-CC-Cc-chH--------------HHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHc
Q 010446          262 KKAVEIYHRVITILELNRG-TE-SA-DLV--------------LPLFSLGSLF---IKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~-~~-~~-~~~--------------~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      ..|-.+...-.+..+.... ++ .+ ...              ..........   .........++.+.+|++.++...
T Consensus        93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~  172 (247)
T PF11817_consen   93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG  172 (247)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc
Confidence            3333333332333333320 01 00 000              0000001111   112233456788888888887652


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (510)
                        ...........+|.-|...|++++|..+|+.+...+.+.    .=......++..+..++...|+.+..+.+.-+
T Consensus       173 --~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e----gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  173 --QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE----GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             --cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence              233455667789999999999999999999998887752    22344556778889999999998877765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.85  E-value=0.45  Score=45.64  Aligned_cols=96  Identities=21%  Similarity=0.298  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                      ++.-|..+...|+...|..++..|+....       ......+.++|++....|-..+|-.++.+++.+.        ..
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~s  674 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SS  674 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------cc
Confidence            34445556668999999999999986532       1223456789999999999999999999999884        12


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      .....+.+|+.|..+.+.+.|++.+++|++.
T Consensus       675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  675 EPLTFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            2355678999999999999999999999985

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.83  E-value=0.26  Score=25.50  Aligned_cols=24  Identities=29%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHH
Q 010446          459 PMLHLGITLYHLNRDKEAEKLVLE  482 (510)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~  482 (510)
                      +...+|.++..+|++++|...+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            568899999999999999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.78  E-value=5.9  Score=31.97  Aligned_cols=130  Identities=12%  Similarity=0.054  Sum_probs=91.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      .+..+.+.+..++|+.-|...-+.        ........+....+.+....|+...|...|..+-...     ..|...
T Consensus        64 aAL~lA~~~k~d~Alaaf~~lekt--------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~~~  130 (221)
T COG4649          64 AALKLAQENKTDDALAAFTDLEKT--------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQIG  130 (221)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcchh
Confidence            555667788888888877764332        1122334456778889999999999999998876543     123322


Q ss_pred             --HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446          204 --AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (510)
Q Consensus       204 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (510)
                        .+...-+.++...|-|++-....       +.+-++.+|....+...||..-++.|++.+|...|.+...
T Consensus       131 rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         131 RDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence              22345567778888877654433       3333566777788888999999999999999999998765

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=91.65  E-value=9.6  Score=34.40  Aligned_cols=91  Identities=24%  Similarity=0.328  Sum_probs=68.6

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHH
Q 010446          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL  207 (510)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (510)
                      ..+.++.++|+++.++..+..+..    ..+.........+|.++...||..++.+.+.......+....-.+.+...++
T Consensus        85 ~~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY  160 (380)
T KOG2908|consen   85 SEQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY  160 (380)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence            345568999999999988876552    2233556677788999999999999999999999888887777776666677


Q ss_pred             HHHHHHH-hhhcHHHH
Q 010446          208 HMGSMYS-TLENYEKS  222 (510)
Q Consensus       208 ~l~~~~~-~~g~~~~A  222 (510)
                      .++.-|+ ..|++...
T Consensus       161 ~lssqYyk~~~d~a~y  176 (380)
T KOG2908|consen  161 SLSSQYYKKIGDFASY  176 (380)
T ss_pred             HHHHHHHHHHHhHHHH
Confidence            7766554 45676654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.48  E-value=7.5  Score=37.50  Aligned_cols=157  Identities=18%  Similarity=0.147  Sum_probs=82.7

Q ss_pred             HhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 010446          173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA  252 (510)
Q Consensus       173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  252 (510)
                      ...|+++++.+..... ++....    |.  .....++..+..+|.++.|+.....-                ...+   
T Consensus       272 v~~~d~~~v~~~i~~~-~ll~~i----~~--~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rF---  325 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAAS-NLLPNI----PK--DQGQSIARFLEKKGYPELALQFVTDP----------------DHRF---  325 (443)
T ss_dssp             HHTT-HHH-----HHH-HTGGG------H--HHHHHHHHHHHHTT-HHHHHHHSS-H----------------HHHH---
T ss_pred             HHcCChhhhhhhhhhh-hhcccC----Ch--hHHHHHHHHHHHCCCHHHHHhhcCCh----------------HHHh---
Confidence            4567888877666421 222111    21  11466777888889888887755332                1122   


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 010446          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (510)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (510)
                      .+..+.|+.+.|.+..++             ......|..||......|+++-|+..|+++-+                +
T Consensus       326 eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~  376 (443)
T PF04053_consen  326 ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------------F  376 (443)
T ss_dssp             HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------H
T ss_pred             HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------c
Confidence            234567888877765432             22345788899999999999999999887643                2


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (510)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (510)
                      ..|..+|...|+.+.-.++.+.+...        .+.       +..-.++...|+.++.++.+.++
T Consensus       377 ~~L~lLy~~~g~~~~L~kl~~~a~~~--------~~~-------n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  377 SGLLLLYSSTGDREKLSKLAKIAEER--------GDI-------NIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHT--------T-H-------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             cccHHHHHHhCCHHHHHHHHHHHHHc--------cCH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence            34556677777765444443333221        111       11223344557777766666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.41  E-value=0.32  Score=25.16  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHH
Q 010446          288 LPLFSLGSLFIKEGKAVDAESVFS  311 (510)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~  311 (510)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356789999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.29  E-value=4.4  Score=37.44  Aligned_cols=105  Identities=14%  Similarity=0.146  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH--
Q 010446          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK--  405 (510)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--  405 (510)
                      +-.++..+|.-|...|+++.|++.|-++-..+..       ...+..++.++..+-...|+|..-..+-.+|......  
T Consensus       149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~  221 (466)
T KOG0686|consen  149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE  221 (466)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence            5678889999999999999999999998877654       3445667788888888899998877777777654200  


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                      ......+....+...+  +....++|..|..+|-.+
T Consensus       222 ~~~q~v~~kl~C~agL--a~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  222 NLAQEVPAKLKCAAGL--ANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hHHHhcCcchHHHHHH--HHHHHHHHHHHHHHHHhC
Confidence            0011122333444444  445556888888887654

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=91.29  E-value=9.3  Score=33.28  Aligned_cols=62  Identities=18%  Similarity=0.115  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHhcC
Q 010446          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREIAFG  492 (510)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~  492 (510)
                      .++|...|++|+++....+.+.+|.......+.+..|+ ..|+.++|....++|+.-....++
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~  204 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence            47899999999999999889999999988888888775 589999999999999887765443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.09  E-value=4.4  Score=37.41  Aligned_cols=108  Identities=14%  Similarity=0.088  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh-
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN-  278 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-  278 (510)
                      ..+..++..+|.-|...|+++.|++.|-++-+.+..     ....+..+.++-.+-...|+|..-..+-.+|....... 
T Consensus       147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~  221 (466)
T KOG0686|consen  147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE  221 (466)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence            345667889999999999999999999998777643     35667788888888899999998888888876652100 


Q ss_pred             -cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          279 -RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (510)
Q Consensus       279 -~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (510)
                       ....-+....+..  |.+....++|..|.+++-.+.
T Consensus       222 ~~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  222 NLAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hHHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCC
Confidence             0001122233333  444555568888888876553

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=90.86  E-value=23  Score=39.44  Aligned_cols=154  Identities=17%  Similarity=0.111  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc---C-------------------
Q 010446          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---G-------------------  301 (510)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g-------------------  301 (510)
                      ..+....+|..+...|++.+|+..|..|++..+...  |+-..+.++-.++.+..-.   |                   
T Consensus       241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~--D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~  318 (1185)
T PF08626_consen  241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSN--DYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST  318 (1185)
T ss_pred             hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcC--cHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence            456677899999999999999999999999988754  4444444444443322110   1                   


Q ss_pred             ----------------------------------ChHHHHHHHHHHHHHHHHHc---CCCChH--HHHHHHHHHHHHHHC
Q 010446          302 ----------------------------------KAVDAESVFSRILKIYTKVY---GENDGR--VGMAMCSLAHAKCAN  342 (510)
Q Consensus       302 ----------------------------------~~~~A~~~~~~al~~~~~~~---~~~~~~--~~~~~~~la~~~~~~  342 (510)
                                                        -.+.=...+++++..+.+..   .+..|.  ...+....+.++...
T Consensus       319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~  398 (1185)
T PF08626_consen  319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ  398 (1185)
T ss_pred             CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence                                              01111234455555555442   111232  445666667776666


Q ss_pred             C--------------------CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          343 G--------------------NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       343 g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                      .                    .-.++..++.+++.....    .-+......++..+|.+|...|-..++-=+++.++..
T Consensus       399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~----~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~  474 (1185)
T PF08626_consen  399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK----DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ  474 (1185)
T ss_pred             hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh----hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            6                    677888888888876432    2344556778899999999999888877777776655


Q ss_pred             H
Q 010446          403 T  403 (510)
Q Consensus       403 ~  403 (510)
                      .
T Consensus       475 ~  475 (1185)
T PF08626_consen  475 L  475 (1185)
T ss_pred             h
Confidence            4

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=90.86  E-value=12  Score=33.68  Aligned_cols=128  Identities=16%  Similarity=0.069  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh
Q 010446          138 IDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE  217 (510)
Q Consensus       138 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  217 (510)
                      ++-+++.++-..+    +.+..+...++...+..|.+.||-+.|.+.+.+...-.-.+|.. -++.-....+|..|....
T Consensus        84 i~eld~~iedaee----nlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k-iDVvf~~iRlglfy~D~~  158 (393)
T KOG0687|consen   84 IKELDEKIEDAEE----NLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK-IDVVFYKIRLGLFYLDHD  158 (393)
T ss_pred             HHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc-hhhHHHHHHHHHhhccHH
Confidence            3444444444433    23356778899999999999999999999998876654443322 334444567777776554


Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      -..+   ..+++-.+.++  |.+....-+.-..-|.......++.+|-.++-.++..+
T Consensus       159 lV~~---~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  159 LVTE---SIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             HHHH---HHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence            3333   33444444443  33333222333344666667788888888888777654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.72  E-value=15  Score=34.72  Aligned_cols=138  Identities=14%  Similarity=0.075  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIE--EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      +.-.|-.+.+++++++|...|.+..+....       .|-  ..+++.......+-..+.+.-...+-...+.    .+.
T Consensus         9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~-------~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~----~~~   77 (549)
T PF07079_consen    9 LCFQGFILQKQKKFQESEKIFSKIYDEKES-------SPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ----FGK   77 (549)
T ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHhhc-------chHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh----cCC
Confidence            666788889999999999999998765332       221  1123332222223344444444444333222    223


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChh----------HHHHHHHHHHHHhhcCCHHHHHHHH
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL----------LVTSLLGMAKVLGSIGRAKKAVEIY  268 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~  268 (510)
                      .+.+   ..-.|...++.+++.+|++.+....+.....   ..+.          ....-...+.++...|++.++...+
T Consensus        78 s~~l---~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iL  151 (549)
T PF07079_consen   78 SAYL---PLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAIL  151 (549)
T ss_pred             chHH---HHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            3332   4556778889999999998776554432211   1110          1111234578899999999999999


Q ss_pred             HHHHHHH
Q 010446          269 HRVITIL  275 (510)
Q Consensus       269 ~~al~~~  275 (510)
                      ++.+...
T Consensus       152 n~i~~~l  158 (549)
T PF07079_consen  152 NRIIERL  158 (549)
T ss_pred             HHHHHHH
Confidence            9887654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.69  E-value=5.5  Score=36.99  Aligned_cols=104  Identities=10%  Similarity=0.038  Sum_probs=78.6

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh------h----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI------L----LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (510)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (510)
                      ..-|..++++++|..|..-|..+++++.+......|      +    ...+...+..||..+++.+-|+.+..+.+.+  
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l--  257 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL--  257 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc--
Confidence            344667788899999999999999887664221111      1    2234567899999999999999999998876  


Q ss_pred             HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (510)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (510)
                            +|....-+..-|.++..+.+|.+|-+.+.-+.-++-
T Consensus       258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymyw  293 (569)
T PF15015_consen  258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYW  293 (569)
T ss_pred             ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  566667777788899999999999888776665553

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.34  E-value=5.9  Score=31.12  Aligned_cols=86  Identities=19%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 010446          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (510)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (510)
                      ....+..+...-...++.+++...+....-+        .|.....-..-|.++...|++.+|+..++...+-       
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-------   73 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS-------   73 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence            3444555555566688999988877654433        4566666777899999999999999999887652       


Q ss_pred             CChHHHHHHHHHHHHHHHCCCH
Q 010446          324 NDGRVGMAMCSLAHAKCANGNA  345 (510)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~  345 (510)
                       .+......-.++.++..+|+.
T Consensus        74 -~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        74 -AGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             -CCCchHHHHHHHHHHHhcCCh
Confidence             222233444466677777765

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>smart00101 14_3_3 14-3-3 homologues

Probab=90.26  E-value=12  Score=32.69  Aligned_cols=184  Identities=11%  Similarity=-0.012  Sum_probs=101.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446          291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDD  369 (510)
Q Consensus       291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (510)
                      ..+|.+..+.++|++...+.+++++...    + ......-.+.++.+|-. .|....+...+...-+....   .+ +.
T Consensus         5 v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~---~~-~~   75 (244)
T smart00101        5 VYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEES---RG-NE   75 (244)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhc---cC-ch
Confidence            4577888889999999999998877421    0 01111222333333322 45556666665542221111   01 11


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHHHh-----ccC-----HHHHHH
Q 010446          370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH---PSFVTHLLNLAASYSR-----SKN-----FVEAER  436 (510)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~-----~g~-----~~~A~~  436 (510)
                      ..     ..+..-|.. .=-++=..+....+.+....+-+..   ...+..+...|..|.-     .|+     .++|..
T Consensus        76 ~~-----~~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~  149 (244)
T smart00101       76 DH-----VASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV  149 (244)
T ss_pred             HH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            11     111111111 0012334455666666655433321   1122222333444332     222     458999


Q ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Q 010446          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  489 (510)
                      .|++|.++....+.+.||.......+.+..|+. +++.++|....++|+.-.-.
T Consensus       150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~  203 (244)
T smart00101      150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA  203 (244)
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            999999998887889999988888888877765 69999998877777665543

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.07  E-value=17  Score=34.14  Aligned_cols=194  Identities=18%  Similarity=0.131  Sum_probs=131.8

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (510)
                      -...+.....-+.++....++..|...+++..-.+.+.  .+......+...++.++.+.+..-.+..+.-.++....+-
T Consensus       269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey  346 (482)
T KOG4322|consen  269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY  346 (482)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Confidence            33445666778889999999999999988876554332  2333456677788888888888888888887777776652


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHHHhccCHHHHHHH
Q 010446          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-----FVTHLLNLAASYSRSKNFVEAERL  437 (510)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~  437 (510)
                         .. +...+..-.+++......|..+.|...+..++....-..|-+...     .+.++..-+..+ ...+.+.+.++
T Consensus       347 ---~l-dyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~  421 (482)
T KOG4322|consen  347 ---SL-DYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRY  421 (482)
T ss_pred             ---cc-chhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHH
Confidence               22 222334446788999999999999999999987664433221111     011111111122 45567888888


Q ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHH---HHHHHHHHHH
Q 010446          438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE---AEKLVLEALY  485 (510)
Q Consensus       438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~  485 (510)
                      ++++-+++.+.  .-+..+.++.+-++..|-..|+..+   +...|+++..
T Consensus       422 L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  422 LDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            99888888776  4567788889999999999998654   5555565554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.04  E-value=9.9  Score=33.81  Aligned_cols=75  Identities=16%  Similarity=0.070  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010446          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (510)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  493 (510)
                      ...++..++..+...|+++.+++.+++.+..        +|..-..+..+-..|...|+...|+..|++.-....+-+|-
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi  223 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI  223 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence            4567888999999999999999999988873        67777788999999999999999999999999987777776


Q ss_pred             CCc
Q 010446          494 DSL  496 (510)
Q Consensus       494 ~~~  496 (510)
                      +..
T Consensus       224 ~P~  226 (280)
T COG3629         224 DPA  226 (280)
T ss_pred             Ccc
Confidence            643

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=90.04  E-value=17  Score=34.33  Aligned_cols=140  Identities=16%  Similarity=0.042  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIAL--GYVYIGDLKFVQSLLDMMSGIVDSLK  196 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (510)
                      ..-...+..+++.++|..|...++.....    +   ++... ...+..++.  .+....++++|.+.++........+ 
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r----l---~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l-  202 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRR----L---PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL-  202 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----C---Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-
Confidence            34567788899999999999999997763    1   11111 344555544  4467889999999998866542110 


Q ss_pred             CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (510)
                         ......+..+       -..-++...+.............-.......+..-|.--...|+|+.|...+-+++++.-
T Consensus       203 ---~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~  272 (379)
T PF09670_consen  203 ---NQEREGLKEL-------VEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA  272 (379)
T ss_pred             ---HhHHHHHHHH-------HHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence               0000111111       111122222222222111100000122333333444444568999999999999998864


Q ss_pred             H
Q 010446          277 L  277 (510)
Q Consensus       277 ~  277 (510)
                      +
T Consensus       273 Q  273 (379)
T PF09670_consen  273 Q  273 (379)
T ss_pred             H
Confidence            3

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.89  E-value=7.8  Score=39.46  Aligned_cols=48  Identities=8%  Similarity=0.176  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      |.-|+.+++.. +.+.......+...|.-++..|++++|...|-+++..
T Consensus       350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            44445555443 2233346677788899999999999999999998765

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=89.87  E-value=6.9  Score=29.42  Aligned_cols=74  Identities=8%  Similarity=0.029  Sum_probs=58.2

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc-------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA-------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      +..+|......+++-.++-+|++|+.+.++.......       ..+.+..+||..+..+|+.+-.++|++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            4567888899999999999999999998887322211       123456789999999999999999999887766555


Q ss_pred             c
Q 010446          321 Y  321 (510)
Q Consensus       321 ~  321 (510)
                      .
T Consensus        84 i   84 (140)
T PF10952_consen   84 I   84 (140)
T ss_pred             c
Confidence            3

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.86  E-value=5.7  Score=42.00  Aligned_cols=145  Identities=18%  Similarity=0.093  Sum_probs=84.1

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010446          337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT  416 (510)
Q Consensus       337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  416 (510)
                      +++...+.|+.|+..|++.-..+       |....-..+...+|..+..+-.-..--+.+.+|+..++...+  .+...-
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  553 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESF-------PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPL  553 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcC-------CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCch
Confidence            34455556666666666654432       333333345567777776543333333667777777766643  333344


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHH-HHHHh-cCChHHHHHHHHHHHHHHHHhcCCC
Q 010446          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG-ITLYH-LNRDKEAEKLVLEALYIREIAFGKD  494 (510)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  494 (510)
                      -|...|.+|..+|++++-++.|.-|+..+     +.||......-.+. +.+.. ..+...|....--++.+..+..+..
T Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (932)
T PRK13184        554 EYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR  628 (932)
T ss_pred             HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch
Confidence            56677889999999999999999998864     56777655433322 11111 1223455555555665555544444


Q ss_pred             C
Q 010446          495 S  495 (510)
Q Consensus       495 ~  495 (510)
                      +
T Consensus       629 ~  629 (932)
T PRK13184        629 E  629 (932)
T ss_pred             H
Confidence            4

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=89.73  E-value=0.69  Score=43.13  Aligned_cols=73  Identities=23%  Similarity=0.337  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh
Q 010446          397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  469 (510)
Q Consensus       397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  469 (510)
                      -+++-+.+.++|+.|+++.......|-+|..+|+++..++++.-|+++.++.+.|-+|.+...+...++++..
T Consensus       319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~  391 (615)
T KOG0508|consen  319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF  391 (615)
T ss_pred             HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence            3567778889999999988777778999999999999999999999999999999999988888888887754

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=89.64  E-value=6.8  Score=29.02  Aligned_cols=101  Identities=20%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             HHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhcCCCChh
Q 010446          168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE----NYEKSMLVYQRVINVLESRYGKTSIL  243 (510)
Q Consensus       168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~  243 (510)
                      .+.-++..||+-+|+++.+......   +.+.. ....+..-|.++..+.    +.+-=..++.-+++-+.+... -.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h---~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRH---GEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHc---cCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cChh
Confidence            3556788999999999999987765   22222 1233556677765543    334334444444444433211 1344


Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (510)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (510)
                      .+..++.+|.-+.....|+++..-.++++.
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            466666666655555445555555444443

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=89.33  E-value=15  Score=32.48  Aligned_cols=131  Identities=15%  Similarity=0.036  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH
Q 010446          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS  214 (510)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (510)
                      ++-++-+.+.++-.+.    .++..+...++.++|..|.+.+|.+.+.+...+..+.....+- .-++.-+-..+|.+|.
T Consensus        92 eeki~Elde~i~~~ee----dngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~-KiDv~l~kiRlg~~y~  166 (412)
T COG5187          92 EEKIEELDERIREKEE----DNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL-KIDVFLCKIRLGLIYG  166 (412)
T ss_pred             HHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc-chhhHHHHHHHHHhhc
Confidence            3344444444443332    3345677889999999999999999999999887665433222 2334444567787776


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      .+.-..+.++.....++   +  |.+....-+.-...|.......++.+|-.++...+..+
T Consensus       167 d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF  222 (412)
T COG5187         167 DRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF  222 (412)
T ss_pred             cHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            66555555554444433   2  33333222333345666667778888888877776554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.16  E-value=17  Score=35.11  Aligned_cols=50  Identities=12%  Similarity=0.057  Sum_probs=22.6

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHhhCChHHHHHHH
Q 010446          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE-VAILDIIALGYVYIGDLKFVQSLL  185 (510)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~  185 (510)
                      -+.....|+++++..+....- +          -|.. ..-...++..+...|-.+.|+.+.
T Consensus       268 fk~av~~~d~~~v~~~i~~~~-l----------l~~i~~~~~~~i~~fL~~~G~~e~AL~~~  318 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASN-L----------LPNIPKDQGQSIARFLEKKGYPELALQFV  318 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHH-T----------GGG--HHHHHHHHHHHHHTT-HHHHHHHS
T ss_pred             HHHHHHcCChhhhhhhhhhhh-h----------cccCChhHHHHHHHHHHHCCCHHHHHhhc
Confidence            345567888888776654110 0          1111 223455666667777777776553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=89.05  E-value=16  Score=32.46  Aligned_cols=109  Identities=6%  Similarity=-0.040  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChH-HHHHHHHHHHHhh
Q 010446          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK-FVQSLLDMMSGIV  192 (510)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~  192 (510)
                      ....++.++.-+..+.+.|++.-|.++..-.++.+.+..     .+........++.+....+.-+ +-.++.++++++.
T Consensus         6 y~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~-----~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS   80 (260)
T PF04190_consen    6 YDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSE-----DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS   80 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            344555677777888999999999998888777766522     2222233455666665554333 3455667777777


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 010446          193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQR  228 (510)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  228 (510)
                       ..+....-....+..+|..+++.|++.+|..+|-.
T Consensus        81 -~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~  115 (260)
T PF04190_consen   81 -KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL  115 (260)
T ss_dssp             -HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred             -ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence             33333333445577888888888888888877754

; PDB: 3LKU_E 2WPV_G.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=89.03  E-value=19  Score=33.47  Aligned_cols=144  Identities=13%  Similarity=0.102  Sum_probs=99.7

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (510)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (510)
                      ..++.+.++.+|...-+..+....- .+...-+--.+.+|+.+..+|-..|+...-...+...+... .++.+....+..
T Consensus       134 Lfl~d~K~~kea~~~~~~~l~~i~~-~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA-tLrhd~e~qavL  211 (493)
T KOG2581|consen  134 LFLIDQKEYKEADKISDALLASISI-QNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA-TLRHDEEGQAVL  211 (493)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh-hhcCcchhHHHH
Confidence            3456678888888877766543211 00011133345677888888888888777666666555443 335566666777


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      .+.+-..|...+.|+.|.....++.--  .  ...+...++.++.+|.+..-+++|..|.+++-+|+...
T Consensus       212 iN~LLr~yL~n~lydqa~~lvsK~~~p--e--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka  277 (493)
T KOG2581|consen  212 INLLLRNYLHNKLYDQADKLVSKSVYP--E--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA  277 (493)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhhcccCc--c--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence            788888999999999998877665311  0  11223678889999999999999999999999998874

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=89.01  E-value=52  Score=38.39  Aligned_cols=132  Identities=13%  Similarity=0.054  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 010446          345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  424 (510)
Q Consensus       345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  424 (510)
                      ..+-+-.+++++-.....   ..-...++.+|...|++....|+++.|..++-.|.+..          ...+....|..
T Consensus      1645 ~~epILa~RRs~l~~~~~---~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~ 1711 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMR---SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKL 1711 (2382)
T ss_pred             HHhHHHHHHHHHHHHhcc---ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHH
Confidence            334444445544333221   13356678899999999999999999999887776532          34677789999


Q ss_pred             HHhccCHHHHHHHHHHHHHHHHHHhCCC---Chh------hHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHH
Q 010446          425 YSRSKNFVEAERLLRICLDIMTKTVGPD---DQS------ISFPMLHLGITLYHLNRDK--EAEKLVLEALYIREI  489 (510)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~------~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~  489 (510)
                      +..+|+...|+..+++.++....-....   .|.      ...+...++......|+++  +-+++|+++.++..+
T Consensus      1712 lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1712 LWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred             HHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence            9999999999999999997654321111   011      1223444555555666643  345667777766654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.97  E-value=16  Score=32.56  Aligned_cols=76  Identities=20%  Similarity=0.314  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ....++..++..+...|+++.++..+++.+..        +|..-..+..+-..|...|+...|+..|++.-....+-.|
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg  222 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG  222 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence            34667889999999999999999999998886        5666778888889999999999999999998876555444


Q ss_pred             CCCh
Q 010446          323 ENDG  326 (510)
Q Consensus       323 ~~~~  326 (510)
                      ....
T Consensus       223 i~P~  226 (280)
T COG3629         223 IDPA  226 (280)
T ss_pred             CCcc
Confidence            4433

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.80  E-value=13  Score=32.93  Aligned_cols=72  Identities=22%  Similarity=0.105  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  495 (510)
                      ..+...+..|...|.+.+|+++.++++.+        +|..-..+..+-.++...|+--.|.+.|++.-+..+.-+|-+-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            34556678899999999999999999884        5666677788889999999999999999999999888888654

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=88.62  E-value=1.3  Score=39.09  Aligned_cols=67  Identities=9%  Similarity=-0.020  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (510)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (510)
                      .+....++.+....+.|+.++|..+|+.|+.+          .|..+.++..+|...-...+.-+|-.+|-+++.+.
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal----------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis  180 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL----------APTNPQILIEMGQFREMHNEIVEADQCYVKALTIS  180 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc----------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence            34445667788889999999999999999998          88899999999999988899999999999988765

>PRK10941 hypothetical protein; Provisional

Probab=88.51  E-value=8.8  Score=34.11  Aligned_cols=76  Identities=12%  Similarity=0.043  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ...+.+.++-.+|...++++.|+.+.+..+.+        .|+...-+...|.+|.++|.+..|..-++..++.+     
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----  245 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----  245 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence            45677888999999999999999999999987        45555667789999999999999999999888764     


Q ss_pred             CCChHHHHH
Q 010446          323 ENDGRVGMA  331 (510)
Q Consensus       323 ~~~~~~~~~  331 (510)
                      ++.|.....
T Consensus       246 P~dp~a~~i  254 (269)
T PRK10941        246 PEDPISEMI  254 (269)
T ss_pred             CCchhHHHH
Confidence            445554333

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=88.41  E-value=9  Score=28.83  Aligned_cols=73  Identities=15%  Similarity=0.088  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                      +..+|....+.+++-.++-.|++|+.+.++....+..       .......++|..+...|+.+-.++|++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            4567888889999999999999999998876322211       234457799999999999999999999887766554

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.31  E-value=1.5  Score=26.22  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=23.0

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          419 LNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                      ..+|..|..+|+.+.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4689999999999999999999886

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK10941 hypothetical protein; Provisional

Probab=87.76  E-value=12  Score=33.28  Aligned_cols=62  Identities=13%  Similarity=-0.047  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (510)
                      +-+.-..+.+.++++.|+.+.+..+.+          .|+.+.-+...|.+|.+.|.+..|..-++..++..
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l----------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQF----------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            334446778999999999999999988          88888888999999999999999999998887765

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.74  E-value=1.2  Score=41.64  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (510)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (510)
                      +...|.+++.-.|+|..|++.++..---....+....+....+++.+|-+|..+++|.+|+..|...+-...+.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~  197 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT  197 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34667888999999999999876532111112223344556788999999999999999999999998876655

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.65  E-value=14  Score=34.52  Aligned_cols=104  Identities=14%  Similarity=0.017  Sum_probs=74.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC---h---h----HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEH---P---S----FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (510)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~---~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (510)
                      =|..++++++|..|..-|..++++..+......   +   +    ...+-..|..||..+++.+-|+....+.+.+    
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----  257 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----  257 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----
Confidence            355666777888887778877777654321111   1   1    1234557899999999999999998888763    


Q ss_pred             hCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (510)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  490 (510)
                          +|....-+..-|.++..+.+|.+|..-+.-+.-++--.
T Consensus       258 ----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~  295 (569)
T PF15015_consen  258 ----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS  295 (569)
T ss_pred             ----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                56666667788889999999999988777766665443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.15  E-value=7.4  Score=26.51  Aligned_cols=40  Identities=15%  Similarity=0.077  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNK  157 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  157 (510)
                      ...+...+..+-+.|++.+|+.+|+++++.+.+.....++
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD   45 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPD   45 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3456778888899999999999999999998887644333

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=87.09  E-value=26  Score=38.99  Aligned_cols=155  Identities=17%  Similarity=0.121  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---CC--------------------
Q 010446          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NG--------------------  343 (510)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g--------------------  343 (510)
                      ....-.+|..+...|++.+|++.|.+|+...+..  .++-+.+.++-.++.+..-   .|                    
T Consensus       242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~  319 (1185)
T PF08626_consen  242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS  319 (1185)
T ss_pred             hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence            4556678999999999999999999999998875  3445555555444432211   00                    


Q ss_pred             ---------------------------------CHHHHHHHHHHHHHHHHhhcc--CCCC-ChHHHHHHHHHHHHHHHcC
Q 010446          344 ---------------------------------NAEEAVELYKKALRVIKDSNY--MSLD-DSIMENMRIDLAELLHIVG  387 (510)
Q Consensus       344 ---------------------------------~~~~A~~~~~~al~~~~~~~~--~~~~-~~~~~~~~~~la~~~~~~g  387 (510)
                                                       -...-.+.+++++..+.+...  .... ......+...++.++....
T Consensus       320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~  399 (1185)
T PF08626_consen  320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH  399 (1185)
T ss_pred             ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence                                             011222334444444444210  0011 1233456667777777777


Q ss_pred             --------------------ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446          388 --------------------RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       388 --------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (510)
                                          .-.++.++..+++.......  ...+...++..+|.+|...|-..++.-+++.++...
T Consensus       400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~  475 (1185)
T PF08626_consen  400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL  475 (1185)
T ss_pred             cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence                                67778888888877654322  345667889999999999998888777777666544

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PRK14707 hypothetical protein; Provisional

Probab=86.77  E-value=68  Score=37.21  Aligned_cols=315  Identities=10%  Similarity=-0.007  Sum_probs=166.4

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHH--HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010446          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL  244 (510)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (510)
                      .+++++...++|.++..+-..+..+...+..+ +.....+  ..+++++...+++.+...+-.-+..+...+........
T Consensus       836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e-~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrq  914 (2710)
T PRK14707        836 HVATVLNAMSKWPDNAVCAAAAGAMAERLADE-PELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRK  914 (2710)
T ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHhcC-hhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHh
Confidence            45666777777777766666666665554333 2222222  34566666677777666666666655555422111111


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ...-..+++++-..+++.++-.+-.-+..+......  .+.....  --.+++++...+++.+...+-.-+..+..... 
T Consensus       915 al~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~-  991 (2710)
T PRK14707        915 ALSAHRVATALNALSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV-  991 (2710)
T ss_pred             hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh-
Confidence            222334566666666666654444444444444321  2222222  23467777778888776666665555555442 


Q ss_pred             CCChH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          323 ENDGR--VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME--NMRIDLAELLHIVGRGQEGRELLEE  398 (510)
Q Consensus       323 ~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~  398 (510)
                       +++.  ....-..+++++....++.++-.+-.-+..+....   ..+ +...  .--..++.++....++.+.-.+-.-
T Consensus       992 -~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL---a~e-p~L~~amdaQ~lan~LNALSKWPde~~Cr~A 1066 (2710)
T PRK14707        992 -DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL---SND-PGLCKALSSQGLTTVLNALCKWPEMPVCLAA 1066 (2710)
T ss_pred             -ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh---ccC-HhhhhhcchHHHHHHHHhhccCCCchhHHHH
Confidence             1222  11223445666666777765555444455444442   111 1111  1114577777777887765555554


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 010446          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  478 (510)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (510)
                      +..+.........-.....-..++.++....++.+.-.+-+.++.+........++........++.+.....++.....
T Consensus      1067 a~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~ 1146 (2710)
T PRK14707       1067 ASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQA 1146 (2710)
T ss_pred             HHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchH
Confidence            44444433211111111223356667777777877777777777777776554444444445666666666666665544


Q ss_pred             HHHHHHHHHHHh
Q 010446          479 LVLEALYIREIA  490 (510)
Q Consensus       479 ~~~~al~~~~~~  490 (510)
                      +=.-+..+..++
T Consensus      1147 cr~Aa~~LA~RL 1158 (2710)
T PRK14707       1147 CESAIDVLAATL 1158 (2710)
T ss_pred             HHHHHHHHHHHh
Confidence            444444444444

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.76  E-value=29  Score=32.89  Aligned_cols=64  Identities=9%  Similarity=-0.077  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH--HHHHHhhhcHHHHHHHHHHHHHH
Q 010446          164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM--GSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      .....+...+..++|..|...+..+...   +++...  ...+..+  |..++..-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3445566778999999999999987764   222222  2334444  45567778899999999987764

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=86.60  E-value=16  Score=29.84  Aligned_cols=165  Identities=8%  Similarity=0.022  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH-----hhhcHHHHHHHHHHHHHHH
Q 010446          160 EEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS-----TLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~  233 (510)
                      ..++....||..+-. +.+|++|..+|..-        -+.......-+.+|..+.     ..+++..|...+..+.+. 
T Consensus        32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~n--------Cden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-  102 (248)
T KOG4014|consen   32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKN--------CDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-  102 (248)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-
Confidence            344555555554422 34555555555431        122223333455555443     345788888888887652 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHhhc-----CC--HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-------
Q 010446          234 ESRYGKTSILLVTSLLGMAKVLGSI-----GR--AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-------  299 (510)
Q Consensus       234 ~~~~~~~~~~~~~~~~~la~~~~~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------  299 (510)
                            +   ...+..++|.++..-     ++  ..+|++++.++-++          ....+.+.|...|..       
T Consensus       103 ------n---~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t  163 (248)
T KOG4014|consen  103 ------N---IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKT  163 (248)
T ss_pred             ------C---CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcc
Confidence                  2   234555666665542     23  67888888887654          112333333333332       


Q ss_pred             -----------------cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 010446          300 -----------------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV  358 (510)
Q Consensus       300 -----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  358 (510)
                                       ..+.+.|.++.-+|-++       ++   ..+..|+...|..    -.+-++|..+-.+|.++
T Consensus       164 ~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel-------~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  164 NAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL-------DI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             cCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-------CC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence                             24455566555555543       33   3455666666644    24678999999999988


Q ss_pred             HHhh
Q 010446          359 IKDS  362 (510)
Q Consensus       359 ~~~~  362 (510)
                      .++.
T Consensus       234 ~~e~  237 (248)
T KOG4014|consen  234 MEEL  237 (248)
T ss_pred             HHHH
Confidence            7764

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.51  E-value=1.6  Score=41.01  Aligned_cols=74  Identities=19%  Similarity=0.213  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      ++..+..++.-+|+|..|++.++..---.+.....-.+..+.+++.+|.+|..+++|.+|++.|...+-...+.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~  197 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT  197 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45577888999999999998876431111112222345566788999999999999999999999988765443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.48  E-value=1.5  Score=26.20  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=23.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          461 LHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                      ..||.+|..+|+.+.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6799999999999999999999885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=86.32  E-value=2.6  Score=39.51  Aligned_cols=139  Identities=14%  Similarity=0.086  Sum_probs=88.7

Q ss_pred             ChhHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhhhhcC-------CCchHHHHHHHHHH----HHHHhhhcHHHHHHH
Q 010446          158 GIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLK-------DDEPLLDAILLHMG----SMYSTLENYEKSMLV  225 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~  225 (510)
                      .....+++-.+|..|.. ..|.-.|..++.++.+....-+       ...|..+.-+....    ..-.-.++.+   .+
T Consensus       241 r~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~  317 (615)
T KOG0508|consen  241 RESRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EM  317 (615)
T ss_pred             hhhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HH
Confidence            34445667777777643 3356667778777666543311       11122211111111    0111111221   12


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 010446          226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  299 (510)
Q Consensus       226 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  299 (510)
                      --+++-+.+.++++.+++........|-+|...|+++..++++.-|+++.++...+-.|.+...+...+.++..
T Consensus       318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~  391 (615)
T KOG0508|consen  318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF  391 (615)
T ss_pred             HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence            23566677788899999887777788999999999999999999999999998888888888888777776543

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=86.30  E-value=25  Score=31.73  Aligned_cols=57  Identities=16%  Similarity=0.108  Sum_probs=35.2

Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (510)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (510)
                      +.-.+..+..+-++....++++        ++..+.+|..++.--  .--..+|++.++++++..+.
T Consensus       192 Q~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~  248 (556)
T KOG3807|consen  192 QKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET  248 (556)
T ss_pred             HHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH
Confidence            3334445555666666677776        466677776666432  22356788888888876543

>PF13041 PPR_2: PPR repeat family

Probab=86.25  E-value=4.4  Score=24.91  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                      .+|+.+-..|.+.|++++|.++|++..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            5688889999999999999999999886

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=85.65  E-value=14  Score=28.37  Aligned_cols=86  Identities=14%  Similarity=0.207  Sum_probs=56.0

Q ss_pred             CChHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHH
Q 010446          387 GRGQEGRELLEECLLITEKY-KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (510)
Q Consensus       387 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (510)
                      |....-..++++++...... .-.+++....++...+..    -+  .+.+.|..+..   +..   ....+..|...|.
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~----~~--~~~~if~~l~~---~~I---G~~~A~fY~~wA~  107 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL----SS--DPREIFKFLYS---KGI---GTKLALFYEEWAE  107 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT----BS--HHHHHHHHHHH---HTT---STTBHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH----cc--CHHHHHHHHHH---cCc---cHHHHHHHHHHHH
Confidence            55566677888888877432 112345555555554442    22  77888876655   222   3345677888999


Q ss_pred             HHHhcCChHHHHHHHHHHH
Q 010446          466 TLYHLNRDKEAEKLVLEAL  484 (510)
Q Consensus       466 ~~~~~g~~~~A~~~~~~al  484 (510)
                      .+...|++++|.+.|+.++
T Consensus       108 ~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  108 FLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhC
Confidence            9999999999999998864

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.64  E-value=8.3  Score=26.28  Aligned_cols=42  Identities=29%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (510)
                      ..+...|.-+-..|++.+|+.+|+++++...+.....||.+.
T Consensus         7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            344556666788999999999999999988776444454443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK14707 hypothetical protein; Provisional

Probab=85.52  E-value=79  Score=36.76  Aligned_cols=316  Identities=10%  Similarity=0.026  Sum_probs=151.8

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHH--HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010446          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL  244 (510)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (510)
                      .++.++...++|.+...+-..+..+...+..+ +.....+  ..+++++....++.++-.+-.-+..+...+........
T Consensus       878 evantLNALSKWPd~~~C~~AA~aLA~rL~~d-~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~  956 (2710)
T PRK14707        878 GVVIVLNALSKWPNVPVCAAAASALAERLADE-PELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLRE  956 (2710)
T ss_pred             HHHHHHhhhccCCCcHHHHHHHHHHHHHHhcC-HHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhh
Confidence            45666666777777666666666665554322 3332222  34566666666666654444444444433321111111


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      +..-..+++++-..+++.+...+-.-+..+.....  +.+....  .-..+++++....++.++-.+-.-+..+...+- 
T Consensus       957 Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa- 1033 (2710)
T PRK14707        957 ALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS- 1033 (2710)
T ss_pred             hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-
Confidence            12223456666667777666655555555544432  1111111  123466677777777666555555555555542 


Q ss_pred             CCChHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH-HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          323 ENDGRVG--MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEEC  399 (510)
Q Consensus       323 ~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (510)
                       ..+...  ..-..++.++....++.+....-.-+..+....   ..+... ....-..++.++...-++.+.-.+-+.+
T Consensus      1034 -~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL---~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa 1109 (2710)
T PRK14707       1034 -NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERL---SDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAA 1109 (2710)
T ss_pred             -cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHh---hccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHH
Confidence             222222  223445666666666655444433333333321   111110 0111245667777777777766666677


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (510)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (510)
                      +.+.........+........++.+.....++.....+=.-+..+..+......-.....-..++..+-...++.+.-.+
T Consensus      1110 ~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac 1189 (2710)
T PRK14707       1110 SALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVC 1189 (2710)
T ss_pred             HHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHH
Confidence            77776664443333333334455555555554443333333333333332111111111123455555555555555555


Q ss_pred             HHHHHHHHHHh
Q 010446          480 VLEALYIREIA  490 (510)
Q Consensus       480 ~~~al~~~~~~  490 (510)
                      -+-++.+....
T Consensus      1190 ~~A~~~La~rl 1200 (2710)
T PRK14707       1190 RSAFVLLAERA 1200 (2710)
T ss_pred             HHHHHHHHHhh
Confidence            55555555443

>PF12854 PPR_1: PPR repeat

Probab=85.44  E-value=2.4  Score=23.60  Aligned_cols=26  Identities=27%  Similarity=0.532  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010446          329 GMAMCSLAHAKCANGNAEEAVELYKK  354 (510)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~  354 (510)
                      ..+|+.+...+.+.|+.++|.+++++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            46788899999999999999999876

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.13  E-value=41  Score=33.09  Aligned_cols=179  Identities=15%  Similarity=0.079  Sum_probs=106.3

Q ss_pred             cCChHHHHHHHHHHHHHHHHH----cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------
Q 010446          300 EGKAVDAESVFSRILKIYTKV----YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------  362 (510)
Q Consensus       300 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------  362 (510)
                      ...|++|...|.-+.....-.    .-..+|..+..+..++.++..+|+.+-|..+.++++=.+...             
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            445778888877776654211    011356677889999999999999999999999998666553             


Q ss_pred             -ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          363 -NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       363 -~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                       .+..+.+..+..+++..-..+.+.|-+..|.++.+-.+.+..    ..+|.-  +...+-....+..+|+=-++.++..
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp----~eDPl~--~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDP----SEDPLG--ILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----cCCchh--HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence             111222333334445556667788999999998887766521    113322  2222222333455666555555544


Q ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHH
Q 010446          442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEKLVLEALYIRE  488 (510)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~  488 (510)
                      -.. .+.  ..-|....+ ..+|..|.....   -+.|...+.+|+.+..
T Consensus       405 e~~-n~l--~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  405 ENM-NKL--SQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             Hhh-ccH--hhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            221 111  012333221 345666666555   5678888999987665

>PF12854 PPR_1: PPR repeat

Probab=85.12  E-value=2.8  Score=23.31  Aligned_cols=27  Identities=22%  Similarity=0.250  Sum_probs=24.2

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          286 LVLPLFSLGSLFIKEGKAVDAESVFSR  312 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~  312 (510)
                      ...+|+.+...|.+.|+.++|.+++++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            357889999999999999999999876

>PF13041 PPR_2: PPR repeat family

Probab=85.00  E-value=4.9  Score=24.67  Aligned_cols=30  Identities=10%  Similarity=0.200  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      ..+|+.+-..|.+.|++++|.++|++..+.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            346888899999999999999999998864

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.10  E-value=30  Score=30.76  Aligned_cols=73  Identities=15%  Similarity=0.167  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      ..+...+..|...|.+.+|+.+.++++.+        +|.....+..+-.++...|+--.+.+.|++.-+..+.-+|-+-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            34555678889999999999999999987        5666677778888899999999999999888777666655443


Q ss_pred             h
Q 010446          326 G  326 (510)
Q Consensus       326 ~  326 (510)
                      .
T Consensus       352 d  352 (361)
T COG3947         352 D  352 (361)
T ss_pred             c
Confidence            3

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.53  E-value=40  Score=31.82  Aligned_cols=116  Identities=12%  Similarity=-0.009  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHh
Q 010446          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KTSILLVTSLLGMAKVLGSIGRA---KKAVEIYHRVITILELN  278 (510)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~  278 (510)
                      .++..|........|++|+..+-.|-+.+-....   ..-...+..-..+.+||+.+.+.   .+|..-+..+-+-+...
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            3566677788888899998888777665533200   00011222333456677766543   45655555554444333


Q ss_pred             c-----------CCCCcchH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          279 R-----------GTESADLV---LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       279 ~-----------~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      +           |+..|..+   ..+..-|.+.+.+|+-++|.++++.+.....+.
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el  300 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL  300 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence            3           34445443   334556899999999999999999998876654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=83.37  E-value=49  Score=32.66  Aligned_cols=129  Identities=13%  Similarity=-0.012  Sum_probs=93.0

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (510)
                      .+.....|......-...|+++...-.+++++--+..          ....|...+......|+.+-|...+.++.++. 
T Consensus       293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~----------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-  361 (577)
T KOG1258|consen  293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL----------YDEFWIKYARWMESSGDVSLANNVLARACKIH-  361 (577)
T ss_pred             cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh----------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-
Confidence            3445556666677778899999999999998865432          23456777888888899998888888877764 


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 010446          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  478 (510)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (510)
                            .+....+...-+..-...|+++.|...++...+-        -|....+-..-+.....+|+.+.+..
T Consensus       362 ------~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  362 ------VKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             ------CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH
Confidence                  3334455556677778889999999999988762        25555555555666778888887774

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=83.34  E-value=25  Score=29.15  Aligned_cols=108  Identities=20%  Similarity=0.154  Sum_probs=58.3

Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChh--
Q 010446          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL--  243 (510)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--  243 (510)
                      ...+......|++++|...++++......+...-..... ++.-|.+-..+..|-+|..+|.-.-.-     .-+++.  
T Consensus        33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe-l~~ag~~~~a~QEyvEA~~l~~~l~~~-----~~ps~~EL  106 (204)
T COG2178          33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE-LYFAGFVTTALQEYVEATLLYSILKDG-----RLPSPEEL  106 (204)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhhcchHHHHHHHHHHHHHHhcC-----CCCCHHHc
Confidence            444555678899999999998887766543211111111 233344444455666666555432211     011111  


Q ss_pred             ---HHHHHHHHH----------HHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          244 ---LVTSLLGMA----------KVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       244 ---~~~~~~~la----------~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                         .......+|          ......|++++|..+++-+-+++....
T Consensus       107 ~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm  155 (204)
T COG2178         107 GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELM  155 (204)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence               111222222          335567899999988887777665543

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=83.17  E-value=7.1  Score=36.96  Aligned_cols=130  Identities=11%  Similarity=0.103  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .....+...+..|+...|-.-...++..          .+..+......+.+....|+|+.+...+.-+..+.   +..+
T Consensus       291 ~~~~si~k~~~~gd~~aas~~~~~~lr~----------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~---~s~~  357 (831)
T PRK15180        291 EITLSITKQLADGDIIAASQQLFAALRN----------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII---GTTD  357 (831)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHh----------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh---cCCc
Confidence            3444455566777777776666665554          44444555667788889999999988887665554   2221


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .    +...+-......|++++|.....-.+.-  +   -++|+   +...-+..-...|-+++|..++++.+.+
T Consensus       358 ~----~~~~~~r~~~~l~r~~~a~s~a~~~l~~--e---ie~~e---i~~iaa~sa~~l~~~d~~~~~wk~~~~~  420 (831)
T PRK15180        358 S----TLRCRLRSLHGLARWREALSTAEMMLSN--E---IEDEE---VLTVAAGSADALQLFDKSYHYWKRVLLL  420 (831)
T ss_pred             h----HHHHHHHhhhchhhHHHHHHHHHHHhcc--c---cCChh---heeeecccHHHHhHHHHHHHHHHHHhcc
Confidence            1    1233344556677777776655544321  0   01121   2222233334455566666666666554

>smart00101 14_3_3 14-3-3 homologues

Probab=82.72  E-value=32  Score=30.06  Aligned_cols=183  Identities=10%  Similarity=0.022  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      +...+...-+.|+|++.+.+..++.+...       +......-.+.+..+|- ..|....+.+.+.....-....+  .
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~-------~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~--~   74 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD-------SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRG--N   74 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcC-------CccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccC--c
Confidence            44566777788999999998888765311       01222333455555553 46777777777765332211111  1


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHhhc-----CC-----HHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS---ILLVTSLLGMAKVLGSI-----GR-----AKKAVE  266 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~  266 (510)
                      +..    ..+..-|. ..=-++-...+...+.+....+-+..   ...+-.+...|..|...     |+     .++|..
T Consensus        75 ~~~----~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~  149 (244)
T smart00101       75 EDH----VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV  149 (244)
T ss_pred             hHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            111    11111111 11123444566677777665543332   12222233344444332     22     458899


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 010446          267 IYHRVITILELNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~  317 (510)
                      .|++|.++......+.+|-......+.+..|+ -+++.++|....+++..-.
T Consensus       150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999887666777766666666666555 5699999998888877654

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.49  E-value=56  Score=32.66  Aligned_cols=106  Identities=16%  Similarity=0.178  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                      -.++.+-|.-.++..+|..++++|...+.....-  ..+...+....+++.||..+.+.++|.+++++|-+.        
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------  423 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------  423 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence            3445677778889999999999999998765331  223355788889999999999999999999999775        


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (510)
                      .|...-....+-.+....|.-++|+...........
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            333445555566677778889999988887766543

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.40  E-value=7.4  Score=35.46  Aligned_cols=69  Identities=19%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHH
Q 010446          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQS  183 (510)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  183 (510)
                      +....+..++..|+..+..+++++|...|..|..+...++  +..+.+...+++..|..++..++.+...-
T Consensus        36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~--Ge~~~e~~eal~~YGkslLela~~e~~VL  104 (400)
T KOG4563|consen   36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY--GEKHLETFEALFLYGKSLLELAKEESQVL  104 (400)
T ss_pred             hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456777899999999999999999999999999988887  56677788899999999988887776643

>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.85  E-value=81  Score=34.08  Aligned_cols=183  Identities=11%  Similarity=0.059  Sum_probs=107.1

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHH----------HHh--------cCCC--Ccch-HHHHHHHHHHHHHcCChHH
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITIL----------ELN--------RGTE--SADL-VLPLFSLGSLFIKEGKAVD  305 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~~~--------~~~~--~~~~-~~~~~~la~~~~~~g~~~~  305 (510)
                      ..+.+|.+|...|+..+|+.+|.+|..-.          ...        .|+.  .+.. ...|...-+++...+-.+.
T Consensus       922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen  922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred             HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence            45567888999999999999999986532          110        0111  1111 2233334455555566666


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 010446          306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  385 (510)
Q Consensus       306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~  385 (510)
                      +.....+|++.    .++++|..+..+.++=.-+...|.+-+|...+-+           .++......++..+..+++.
T Consensus      1002 vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-----------npdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 1002 VCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-----------NPDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred             HHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-----------CCcHHHHHHHHHHHHHHHHh
Confidence            66666666554    3566777777777777778888888877665433           35555556677888888888


Q ss_pred             cCChHHHHH-----HHHHHHH-HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH-HHHHHHHH
Q 010446          386 VGRGQEGRE-----LLEECLL-ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER-LLRICLDI  444 (510)
Q Consensus       386 ~g~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~  444 (510)
                      .|+++.=.+     +-++... +.++............|..|-..+...+++.+|-. +|+.+..+
T Consensus      1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred             ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence            888653211     1122222 11111111222222345555556778888887654 56666654

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.84  E-value=20  Score=33.66  Aligned_cols=118  Identities=17%  Similarity=-0.007  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCChhHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHH
Q 010446          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLAASYSRSKN---FVEAERLLRICLDIMTKT  448 (510)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~  448 (510)
                      .++..|.+......|++|+.++-.|-+.+.....   .....++..-..+.+||+...+   ..+|..-+..+-.-+...
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            3455566666777777777777666554432200   0111222333345677777665   345555555444444433


Q ss_pred             hC-----------CCChhhH---HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcC
Q 010446          449 VG-----------PDDQSIS---FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  492 (510)
Q Consensus       449 ~~-----------~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  492 (510)
                      +|           +..|..+   ..+..-|.+.+++|+-++|.++++.+.....+..-
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki  302 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKI  302 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeec
Confidence            33           3345433   34455689999999999999999999987776533

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=81.77  E-value=2.8  Score=22.24  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          417 HLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                      +|+.+-..|.+.|++++|.+.+++..+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            467788899999999999999998765

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=81.74  E-value=37  Score=30.14  Aligned_cols=204  Identities=14%  Similarity=0.054  Sum_probs=97.0

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHHhcCCCCcchHHH
Q 010446          211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK-KAVEIYHRVITILELNRGTESADLVLP  289 (510)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (510)
                      ..+.+.|++..|.++..-.++.+.+...   +.......+++.+....+.-+ +-..+.+++++.. +. +.........
T Consensus        18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~---~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~-~~~~~Gdp~L   92 (260)
T PF04190_consen   18 LILLKHGQYGSGADLALLLIEVYEKSED---PVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KF-GSYKFGDPEL   92 (260)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT-SS-TT--HHH
T ss_pred             HHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc-CCCCCCCHHH
Confidence            3344445555555555444444444211   111122334555554443222 3456677777776 32 3334455678


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHH-----------HHHHHHHcCCCChHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHH
Q 010446          290 LFSLGSLFIKEGKAVDAESVFSRI-----------LKIYTKVYGENDGRVGMAMC-SLAHAKCANGNAEEAVELYKKALR  357 (510)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~  357 (510)
                      +..+|..|++.|++.+|+.+|-..           +......   ..+.....+. .....|...++...|...+..-.+
T Consensus        93 H~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~---~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~  169 (260)
T PF04190_consen   93 HHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK---GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS  169 (260)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH---TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh---cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            889999999999999999887421           1111111   1122222222 233457778999999988877776


Q ss_pred             HHHhh----c----cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc
Q 010446          358 VIKDS----N----YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  429 (510)
Q Consensus       358 ~~~~~----~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  429 (510)
                      ...+.    .    ...++.|.+-.++. +-.+ +..++    ...|....+.+..... .+|.....+..+|..|+...
T Consensus       170 ~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t-~e~~~----~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  170 KLIESHPKLENSDIEYPPSYPLLNFLQL-LLLT-CERDN----LPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             HHHHH---EEEEEEEEESS-HHHHHHHH-HHHH-HHHT-----HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH---
T ss_pred             HHhccCcchhccccCCCCCCchHHHHHH-HHHH-HhcCc----HHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCCC
Confidence            53321    0    11223343322222 2222 22332    3556655555444321 23455667777888887644

; PDB: 3LKU_E 2WPV_G.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=81.11  E-value=3.2  Score=35.08  Aligned_cols=55  Identities=13%  Similarity=0.240  Sum_probs=48.5

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .....++.+.|.+.|.+++.+.        |.....|+.+|....+.|+++.|...|++.+++
T Consensus         4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            4456789999999999999874        566788999999999999999999999999987

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.86  E-value=43  Score=30.23  Aligned_cols=110  Identities=16%  Similarity=0.109  Sum_probs=70.5

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (510)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (510)
                      ..+.....||.+|...+++..|-..+.-. ..-......+.......+..+|.+|...++..+|..+..++--....   
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~---  176 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE---  176 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc---
Confidence            34566778999999999999887665422 11000000112234567888999999999999999999887544332   


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (510)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (510)
                       ..++..........|+++-..+++-+|-..|.+.
T Consensus       177 -~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel  210 (399)
T KOG1497|consen  177 -SSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL  210 (399)
T ss_pred             -ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2333333344455677777788887776665543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=80.68  E-value=24  Score=27.29  Aligned_cols=66  Identities=12%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          286 LVLPLFSLGSLFIKEGKA---VDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ...+.+++++++....+.   .+.+.+++..++       ..+| ......+.|+..+.+.|+|+++..+.+..++.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~  100 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET  100 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence            456788899998876654   445555555543       1233 34456778899999999999999999998876

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.67  E-value=16  Score=25.11  Aligned_cols=35  Identities=6%  Similarity=-0.034  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQ  151 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~  151 (510)
                      ....+...+...=+.|+|++|+.+|..+++.+...
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~   39 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA   39 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            34457778888889999999999999999988764

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.49  E-value=16  Score=25.14  Aligned_cols=35  Identities=11%  Similarity=0.145  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI  152 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~  152 (510)
                      ...++..|...=..|++++|+.+|.++++.+....
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l   40 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL   40 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            34467788888899999999999999999988765

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=80.41  E-value=3.8  Score=34.67  Aligned_cols=56  Identities=13%  Similarity=0.021  Sum_probs=50.8

Q ss_pred             HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Q 010446          127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (510)
Q Consensus       127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (510)
                      .....|+.+.|.+.|.+++++          .|+....|..+|......|+++.|...|++.+++.
T Consensus         4 ~~~~~~D~~aaaely~qal~l----------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld   59 (287)
T COG4976           4 MLAESGDAEAAAELYNQALEL----------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD   59 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhc----------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence            456789999999999999998          88889999999999999999999999999988874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	510
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		4e-08
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		1e-06
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		5e-08
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		2e-07
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		3e-06
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		6e-08
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		2e-07
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		3e-06

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%)
Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 64  DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123
Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
           EK  G +HP   T L  LA  Y     + +A  LL   L I  KT+G D  +++  + +L
Sbjct: 58  EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117
Query: 464 GITLYHLNRDKEAEKLVLEALYIREIAFGKD 494
            +      + KEAE L   AL IRE   GKD
Sbjct: 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 2/167 (1%)
Query: 162 VAILDIIALGYVYIGDLKFVQSLL-DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYE 220
             +L+I+AL Y      K    LL D ++    +L  D P + A L ++  +Y     Y+
Sbjct: 43  ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102
Query: 221 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280
           ++  + +R + + E   GK    +   L  +A +  + G+A++    Y R + I     G
Sbjct: 103 EAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162
Query: 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-KIYTKVYGENDG 326
            +  ++     +L S ++K+GK  DAE+++  IL + + K +G  +G
Sbjct: 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%)
Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+++  +    + + E   GK    +  +L  +A + G 
Sbjct: 38  DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97
Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G    D+   L +L  L   +GKA + E  + R L+IY
Sbjct: 98  RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368
               G +D  V     +LA      G  ++A  LYK+ L    +  + S++
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%)
Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
           I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  K +G     ++  + 
Sbjct: 72  IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLS 131
Query: 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494
           +L +   +  + +E E     AL I     G D
Sbjct: 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 2/167 (1%)
Query: 162 VAILDIIALGYVYIGDLKFVQSLL-DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYE 220
             +L+I+AL Y      K    LL D ++    +L  D P + A L ++  +Y     Y+
Sbjct: 43  ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102
Query: 221 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280
           ++  + +R + + E   GK    +   L  +A +  + G+A++    Y R + I     G
Sbjct: 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162
Query: 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-KIYTKVYGENDG 326
            +  ++     +L S ++K+GK  DAE+++  IL + + K +G  +G
Sbjct: 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%)
Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+++  +    + + E   GK    +  +L  +A + G 
Sbjct: 38  DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97
Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G    D+   L +L  L   +GKA + E  + R L+IY
Sbjct: 98  RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368
               G +D  V     +LA      G  ++A  LYK+ L    +  + S++
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%)
Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
           I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  K +G     ++  + 
Sbjct: 72  IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN 131
Query: 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494
           +L +   +  + +E E     AL I     G D
Sbjct: 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	510
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	9e-34
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-26
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-19
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-18
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	8e-15
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-12
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	5e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-18
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-10
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-17
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-17
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	9e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-10
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	3e-08
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	1e-05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	1e-05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	4e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	5e-07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	6e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-04

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  131 bits (331), Expect = 7e-35
 Identities = 59/290 (20%), Positives = 100/290 (34%), Gaps = 17/290 (5%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             H     S L     ++ + ++ +  LE   G     + T L  +A V     + K+A 
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
            + +  + I E   G +   +   L +L  L+ K GK  +AE +  R L+I  KV G+  
Sbjct: 64  HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------SIMENMRIDL 379
             V   + +LA      G AEE    Y++AL +        L            N    L
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT----RLGPDDPNVAKTKNN----L 175

Query: 380 AELLHIVGRGQEGRELLEECL-LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
           A      G+ Q+   L +E L    EK  G  +       ++            ++    
Sbjct: 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235

Query: 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
                   K    D  +++  +  LG       + + A  L   A   R+
Sbjct: 236 EYGSWY--KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  109 bits (275), Expect = 4e-27
 Identities = 49/255 (19%), Positives = 88/255 (34%), Gaps = 17/255 (6%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           S          +     AV +  + +  LE   G +  D+   L  L  ++  + K  +A
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366
             + +  L I  K  G++   V   + +LA      G  +EA  L K+AL + +      
Sbjct: 63  AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----V 118

Query: 367 LDD------SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
           L          + N    LA L    G+ +E        L I     G + P+      N
Sbjct: 119 LGKFHPDVAKQLNN----LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174

Query: 421 LAASYSRSKNFVEAERLLRICLDIM-TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479
           LA+ Y +   + +AE L +  L     K  G  +       +H        ++ +++   
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234

Query: 480 VLEALYIREIAFGKD 494
                + +  A   D
Sbjct: 235 GEYGSWYK--ACKVD 247

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  128 bits (325), Expect = 9e-34
 Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 18/293 (6%)

Query: 204 AILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK 262
              LH +   Y++   YE ++ + ++ +  LE   G     + T L  +A V     + K
Sbjct: 27  LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86

Query: 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322
            A  + +  + I E   G +   +   L +L  L+ K GK  +AE +  R L+I  KV G
Sbjct: 87  DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146

Query: 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------SIMENMR 376
           ++   V   + +LA      G  EE    Y++AL + +      L            N  
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT----KLGPDDPNVAKTKNN-- 200

Query: 377 IDLAELLHIVGRGQEGRELLEECLLIT-EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435
             LA      G+ ++   L +E L    E+  G          ++            +  
Sbjct: 201 --LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258

Query: 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
                      K    D  +++  + +LG       + + AE L   A+  R+
Sbjct: 259 SFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  111 bits (280), Expect = 2e-27
 Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 3/239 (1%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G  G+ K+A  + 
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328
            R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY    G +D  V
Sbjct: 135 KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194

Query: 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388
                +LA      G  ++A  LYK+ L    +  + S+DD           E     G+
Sbjct: 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-HAEEREECKGK 253

Query: 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
            ++G    E       K    + P+  T L NL A Y R   F  AE L    +    +
Sbjct: 254 QKDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  107 bits (270), Expect = 4e-26
 Identities = 54/231 (23%), Positives = 86/231 (37%), Gaps = 19/231 (8%)

Query: 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332
            +     G E    +  L +L   +  +G+   A  +  + L+   K  G +   V   +
Sbjct: 13  NLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATML 72

Query: 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNY--------MSLDDSIMENMRIDLAELLH 384
             LA         ++A  L   AL  I++            +L+         +LA L  
Sbjct: 73  NILALVYRDQNKYKDAANLLNDAL-AIREKTLGKDHPAVAATLN---------NLAVLYG 122

Query: 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
             G+ +E   L +  L I EK  GK+HP     L NLA        + E E   +  L+I
Sbjct: 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

Query: 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI-REIAFGKD 494
               +GPDD +++    +L        + K+AE L  E L    E  FG  
Sbjct: 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query: 393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
                    +  +  G E P+ +  L NL   Y+    +  A  L +  L+ + KT G D
Sbjct: 5   HHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD 64

Query: 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494
              ++  +  L +     N+ K+A  L+ +AL IRE   GKD
Sbjct: 65  HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 88.7 bits (220), Expect = 3e-19
 Identities = 49/388 (12%), Positives = 117/388 (30%), Gaps = 31/388 (7%)

Query: 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176
           ++    NE   MI   +  DA  L       V++ I    +  + +    ++   +  + 
Sbjct: 11  RVGVKINEWYKMIRQFSVPDAEIL----KAEVEQDIQQMEEDQDLLIYYSLMCFRHQLML 66

Query: 177 DLKFVQSLLDMMSGIVDSLKDDEPLLDAI--------LLHMGSMYSTLENYEKSMLVYQR 228
           D             + + L+  E     +        L   G      + Y +++  Y+ 
Sbjct: 67  DYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYRE 126

Query: 229 VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288
               L                 +A+    + +   ++    + + I + N    S   + 
Sbjct: 127 AEKELPFVSDDIEK--AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ-NHPLYSIRTIQ 183

Query: 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA 348
            LF +   +        A       L++   +  +    + +++ ++A++   +G+ + A
Sbjct: 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF--IAISLLNIANSYDRSGDDQMA 241

Query: 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408
           VE ++KA +V ++     L   +       L+  L   G+ Q+  + +EE L        
Sbjct: 242 VEHFQKAAKVSREKVPDLLPKVL-----FGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296

Query: 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 468
           K +      L  +       +   +        L    K                     
Sbjct: 297 KFYKELFLFLQAVYKETVDERKIHDL-------LSYFEKKNLHAYIEACA--RSAAAVFE 347

Query: 469 HLNRDKEAEKLVLEALYIREIAFGKDSL 496
                ++A     + L  +E     + L
Sbjct: 348 SSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 50/339 (14%), Positives = 108/339 (31%), Gaps = 31/339 (9%)

Query: 160 EEVAILDIIALGYVYIGDLKFVQS--LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE 217
             V +   I   Y  I       +  L   +   +  +++D+ LL    L M   +  + 
Sbjct: 10  SRVGVK--INEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSL-MCFRHQLML 66

Query: 218 NYEKSMLVYQ------RVINVLESRYGKTSILLVT-SLLGMAKVLGSIGRAKKAVEIYHR 270
           +Y +    Y        ++  +E+   K + LL   SL              +A+  Y  
Sbjct: 67  DYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYRE 126

Query: 271 VITIL-ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329
               L  ++   E A+     F +   +    +   +     + L IY         R  
Sbjct: 127 AEKELPFVSDDIEKAEF---HFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYSIRTI 182

Query: 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG 389
            ++  +A       + ++A+   + AL +  D          + N    +A      G  
Sbjct: 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN----IANSYDRSGDD 238

Query: 390 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449
           Q   E  ++   ++ +      P     L  L+ +  ++    +A + +   LD +T   
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKV---LFGLSWTLCKAGQTQKAFQFIEEGLDHITARS 295

Query: 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
                        L + L  + ++   E+ + + L   E
Sbjct: 296 HKF-------YKELFLFLQAVYKETVDERKIHDLLSYFE 327

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 86.6 bits (214), Expect = 1e-18
 Identities = 38/293 (12%), Positives = 92/293 (31%), Gaps = 15/293 (5%)

Query: 193 DSLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM 251
           + L         +    +G +        +S+ + Q+    +  ++      L  SL+  
Sbjct: 42  EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ-MARQHDVWHYAL-WSLIQQ 99

Query: 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311
           +++L + G  + A E   +   ++      +       +     L     +  +AE+   
Sbjct: 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 159

Query: 312 RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371
             +++ +        +    +  L     A G+ + A     +   ++ +  Y S   S 
Sbjct: 160 SGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216

Query: 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 431
              +R        + G        L              +        N+A +      F
Sbjct: 217 ANKVR---VIYWQMTGDKAAAANWLRHTAKPE----FANNHFLQGQWRNIARAQILLGEF 269

Query: 432 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484
             AE +L    +         D + +  +L L    +   R  +A++++L+AL
Sbjct: 270 EPAEIVLEELNENARSLRLMSDLNRN--LLLLNQLYWQAGRKSDAQRVLLDAL 320

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 75.0 bits (184), Expect = 8e-15
 Identities = 39/316 (12%), Positives = 100/316 (31%), Gaps = 18/316 (5%)

Query: 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMM 188
           I  GN ++A  L +   E +             +    ++       G+L    +L+   
Sbjct: 25  INDGNPDEAERLAKLALEELPP-----GWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79

Query: 189 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL 248
             +          L + L+    +       + +    ++   ++  ++ +   +    +
Sbjct: 80  EQMARQHDVWHYALWS-LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138

Query: 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAES 308
              A++L +  R  +A          +E+    +    +  L  L    +  G   +A S
Sbjct: 139 RIRAQLLWAWARLDEAEASARSG---IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 195

Query: 309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368
             +R+  +       +   +  A           G+   A    +   +    +N+    
Sbjct: 196 QLNRLENLLGN-GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF--- 251

Query: 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428
              ++    ++A    ++G  +    +LEE        +         +LL L   Y ++
Sbjct: 252 ---LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQA 306

Query: 429 KNFVEAERLLRICLDI 444
               +A+R+L   L +
Sbjct: 307 GRKSDAQRVLLDALKL 322

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 31/293 (10%), Positives = 81/293 (27%), Gaps = 17/293 (5%)

Query: 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
            ++ +          +     N +++  + +     LE          + +   + +VL 
Sbjct: 8   REDTMHAEFNALRAQVAINDGNPDEAERLAKLA---LEELPPGWFYSRIVATSVLGEVLH 64

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
             G   +++ +  +   +    +       +  L     +   +G    A     +  ++
Sbjct: 65  CKGELTRSLALMQQTEQMAR--QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376
             + + E        +   A    A    +EA    +  + V+                 
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS-----YQPQQQLQCL 177

Query: 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAE 435
             L +     G     R  L     +     GK H  ++++   +   Y +   +   A 
Sbjct: 178 AMLIQCSLARGDLDNARSQLNRLENLLG--NGKYHSDWISNANKVRVIYWQMTGDKAAAA 235

Query: 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
             LR       K    ++  +     ++      L   + AE ++ E      
Sbjct: 236 NWLRHTA----KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 9/169 (5%)

Query: 331 AMCSLAHAKCAN--GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388
           A  +   A+ A   GN +EA  L K AL  +    + S    +  ++   L E+LH  G 
Sbjct: 14  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS--RIVATSV---LGEVLHCKGE 68

Query: 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448
                 L+++   +  ++        +  L+  +           A         ++ + 
Sbjct: 69  LTRSLALMQQTEQMARQHD--VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126

Query: 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497
                    F +      L+   R  EAE      + +      +  L 
Sbjct: 127 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 37/294 (12%), Positives = 87/294 (29%), Gaps = 15/294 (5%)

Query: 93  DFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152
           +  RS  L   +  +    + +   L  L  + + +   G    A +  +  ++ + EQ 
Sbjct: 68  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127

Query: 153 NAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSM 212
                  E +  +   A        L   ++       ++ S +  + L    +L     
Sbjct: 128 LEQLPMHEFLVRI--RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML--IQC 183

Query: 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272
                + + +     R+ N+L +     S  +  +           G    A        
Sbjct: 184 SLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242

Query: 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332
                     +  L     ++    I  G+   AE V   + +    +       +   +
Sbjct: 243 KPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNL 296

Query: 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS--LDDSIMENMRIDLAELLH 384
             L       G   +A  +   AL++   + ++S  + +   E M   L +L+ 
Sbjct: 297 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG--EAMAQQLRQLIQ 348

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 63/383 (16%), Positives = 133/383 (34%), Gaps = 53/383 (13%)

Query: 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAI-LDIIALGYVYIGD----LKFVQSLL 185
           +G+     +    N      Q  +G+ G   + + L +        GD    + F Q+ +
Sbjct: 21  LGSGGGGTNSHDGNS-----QQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI 75

Query: 186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245
                      +D   L AI   +G+ Y  L +Y K+M  ++  + + +S   +      
Sbjct: 76  QA-------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--A 126

Query: 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAV 304
            S   +   L  +GR  +A     R +T+  +L            L++LG+++  +GK +
Sbjct: 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA---LYNLGNVYHAKGKHL 183

Query: 305 D-----------------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE 347
                             A   +   LK+   +        G A  +L +     G+ + 
Sbjct: 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGA--QGRACGNLGNTYYLLGDFQA 241

Query: 348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407
           A+E +++ LR+ ++      D +       +L      +G+ ++  E  +  L +  +  
Sbjct: 242 AIEHHQERLRIAREFG----DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL- 296

Query: 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467
             E         +L  +Y+    F  A       L I  +      ++ +     LG   
Sbjct: 297 -GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC--WSLGNAH 353

Query: 468 YHLNRDKEAEKLVLEALYIREIA 490
             +   + A K   + L   ++A
Sbjct: 354 SAIGGHERALKYAEQHL---QLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 42/298 (14%), Positives = 82/298 (27%), Gaps = 29/298 (9%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
                     L +       +           G +S+     L    + L + G  +  V
Sbjct: 11  ASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSM--CLELALEGERLCNAGDCRAGV 68

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
             +   I     +  T SA        LG+ +   G    A       L +   +     
Sbjct: 69  AFFQAAIQAGTEDLRTLSAI----YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKAL---RVIKD--------SN----YMSLDDS 370
                +  +L +     G  +EA    ++ L   R + D         N    Y +    
Sbjct: 125 --EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430
           + +           +        E  +E L +       +  +      NL  +Y    +
Sbjct: 183 LGQRNPGKFG--DDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGD 238

Query: 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
           F  A    +  L I  +  G D  +      +LG +   L + ++A +     L +  
Sbjct: 239 FQAAIEHHQERLRIA-REFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 44/260 (16%), Positives = 72/260 (27%), Gaps = 33/260 (12%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           S          +G        +         + G     + L L   G      G     
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGS--SMCLELALEGERLCNAGDCRAG 67

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366
            + F   ++  T    E+   +      L +A    G+  +A++ +K  L + K  N   
Sbjct: 68  VAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN--- 120

Query: 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426
            D         +L   L ++GR  E     E  L +  +    +  S    L NL   Y 
Sbjct: 121 -DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYH 177

Query: 427 R-----------------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH-LGITLY 468
                              +    A    +  L +M        Q  +      LG T Y
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRA---CGNLGNTYY 234

Query: 469 HLNRDKEAEKLVLEALYIRE 488
            L   + A +   E L I  
Sbjct: 235 LLGDFQAAIEHHQERLRIAR 254

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 50/390 (12%), Positives = 132/390 (33%), Gaps = 32/390 (8%)

Query: 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176
            + E  NE    I   +  DA  L       +K++++   +  +      ++   +  + 
Sbjct: 11  SIGEKINEWYMYIRRFSIPDAEYL----RREIKQELDQMEEDQDLHLYYSLMEFRHNLML 66

Query: 177 D---------LKFVQSLLDMMSGIVDSLKDDEPLLDAI-LLHMGSMYSTLENYEKSMLVY 226
           +         ++    L D++  I         LL+       G        Y  ++  +
Sbjct: 67  EYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFF 126

Query: 227 QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286
           ++  + L   + K  I        M++    + +   +++   +   I +      +  L
Sbjct: 127 KKAESKL--IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK-EHEAYNIRL 183

Query: 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 346
           +       + F+   +  DA S F +   +      +    +G  + ++   K +    E
Sbjct: 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYE 241

Query: 347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406
           +A+  +K+A+ V ++SN +             + ++ + +G+  +  E   + +  ++K 
Sbjct: 242 DAIPYFKRAIAVFEESNILPSLPQAYFL----ITQIHYKLGKIDKAHEYHSKGMAYSQKA 297

Query: 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 466
               + S    L +L  S    +        L   +         D +  +   + +   
Sbjct: 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY------ADLEDFA---IDVAKY 348

Query: 467 LYHLNRDKEAEKLVLEALYIREIAFGKDSL 496
            +     ++A    L+   +R++  G  SL
Sbjct: 349 YHERKNFQKASAYFLKVEQVRQLIQGGVSL 378

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 81.1 bits (201), Expect = 5e-17
 Identities = 50/313 (15%), Positives = 107/313 (34%), Gaps = 34/313 (10%)

Query: 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255
            +D   L AI   +G+ Y  L +Y K++  +   + +  +   +       +   +   L
Sbjct: 36  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTL 93

Query: 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD---------- 305
             +G   +A+    R + I               L++LG+++  +GK+            
Sbjct: 94  KVLGNFDEAIVCCQRHLDISRELNDKV--GEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151

Query: 306 ----------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355
                     A  ++   L + T + G+     G A  +L +     GN  +AV  +++ 
Sbjct: 152 PEDVRNALQAAVDLYEENLSLVTAL-GDRAA-QGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415
           L + K+      D +       +L      +G  +   E  ++ LL+  + K        
Sbjct: 210 LLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEA 263

Query: 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475
               +L  +Y+  +++ +A       L I  +      +  +     LG     L    +
Sbjct: 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC--WSLGNAYTALGNHDQ 321

Query: 476 AEKLVLEALYIRE 488
           A     + L I  
Sbjct: 322 AMHFAEKHLEISR 334

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 66.5 bits (163), Expect = 4e-12
 Identities = 60/354 (16%), Positives = 125/354 (35%), Gaps = 47/354 (13%)

Query: 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD- 177
           LEL  E + +   G+    +   +    AV  Q+   +      AI   +   Y Y+ D 
Sbjct: 6   LELALEGERLCKSGDCRAGVSFFE---AAV--QVGTEDLK-TLSAIYSQLGNAYFYLHDY 59

Query: 178 ---LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234
              L++    L +   I      D+        ++G+    L N++++++  QR +++  
Sbjct: 60  AKALEYHHHDLTLARTI-----GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114

Query: 235 SRYGKTSILLVTSLLGMAKVLGSIGRA--------------------KKAVEIYHRVITI 274
               K       +L  +  V  + G++                    + AV++Y   +++
Sbjct: 115 ELNDKVGE--ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172

Query: 275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS 334
           +      + A       +LG+     G   DA     + L I  + +G+       A  +
Sbjct: 173 VT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAA-ERRAYSN 228

Query: 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394
           L +A    G  E A E YKK L + +       D ++       L     ++   ++  +
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLLARQLK----DRAVEAQSCYSLGNTYTLLQDYEKAID 284

Query: 395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448
              + L I ++ K  +         +L  +Y+   N  +A       L+I  + 
Sbjct: 285 YHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 34/220 (15%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L   G    K G      S F   +++ T    E+   +      L +A     +  +A+
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           E +   L + +       D         +L   L ++G   E     +  L I+ +    
Sbjct: 64  EYHHHDLTLARTIG----DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND- 118

Query: 410 EHPSFVTHLLNLAASYSR--------------------SKNFVEAERLLRICLDIMTKTV 449
                   L NL   Y                            A  L    L ++T   
Sbjct: 119 -KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177

Query: 450 GPDDQSISFPMLH-LGITLYHLNRDKEAEKLVLEALYIRE 488
               Q  +      LG T Y L   ++A     + L I +
Sbjct: 178 DRAAQGRA---FGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 32/239 (13%), Positives = 75/239 (31%), Gaps = 28/239 (11%)

Query: 97  SKTLHDHSS---------NLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEA 147
           S+ L+D            N++                     +      A+DL + N   
Sbjct: 113 SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172

Query: 148 VKEQINAGNKGIEEVAILDIIALGYVYIGD----LKFVQSLLDMMSGIVDSLKDDEPLLD 203
           V      G++   +      +   +  +G+    +   +  L +          D+    
Sbjct: 173 VTA---LGDRA-AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-----GDKAAER 223

Query: 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263
               ++G+ Y  L  +E +   Y++ + +      +       S   +      +   +K
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEK 281

Query: 264 AVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
           A++ + + + I  EL    +        +SLG+ +   G    A     + L+I  +V 
Sbjct: 282 AIDYHLKHLAIAQELK---DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 53/314 (16%), Positives = 108/314 (34%), Gaps = 36/314 (11%)

Query: 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255
            +D   L AI   +G+ Y  L +Y K++  +   + +  +   +       +   +   L
Sbjct: 40  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTL 97

Query: 256 GSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVD--------- 305
             +G   +A+    R + I  ELN     A     L++LG+++  +GK+           
Sbjct: 98  KVLGNFDEAIVCCQRHLDISRELNDKVGEARA---LYNLGNVYHAKGKSFGCPGPQDVGE 154

Query: 306 -----------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354
                      A   +   L + T +        G A  +L +     GN  +AV  +++
Sbjct: 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQ 212

Query: 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414
            L + K+      D +       +L      +G  +   E  ++ LL+  + K       
Sbjct: 213 RLLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVE 266

Query: 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 474
                +L  +Y+  +++ +A       L I  +      +  +     LG     L    
Sbjct: 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC--WSLGNAYTALGNHD 324

Query: 475 EAEKLVLEALYIRE 488
           +A     + L I  
Sbjct: 325 QAMHFAEKHLEISR 338

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 68/409 (16%), Positives = 134/409 (32%), Gaps = 60/409 (14%)

Query: 110 GMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIA 169
           G    E   LEL  E + +   G+    +   +    AV  Q+   +      AI   + 
Sbjct: 1   GPGSMEASCLELALEGERLCKSGDCRAGVSFFE---AAV--QVGTEDLK-TLSAIYSQLG 54

Query: 170 LGYVYIGD----LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLV 225
             Y Y+ D    L++    L +   I      D+        ++G+    L N++++++ 
Sbjct: 55  NAYFYLHDYAKALEYHHHDLTLARTI-----GDQLGEAKASGNLGNTLKVLGNFDEAIVC 109

Query: 226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA--------------------KKAV 265
            QR +++      K       +L  +  V  + G++                    + AV
Sbjct: 110 CQRHLDISRELNDKVGE--ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
           + Y   ++++      + A       +LG+     G   DA     + L I  + +G+  
Sbjct: 168 DFYEENLSLVT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKA 224

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKAL---RVIKDSNYM--SLDDSIMENMRIDLA 380
                A  +L +A    G  E A E YKK L   R +KD      S            L 
Sbjct: 225 A-ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS---------LG 274

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
               ++   ++  +   + L I ++    +         +L  +Y+   N  +A      
Sbjct: 275 NTYTLLQDYEKAIDYHLKHLAIAQELN--DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

Query: 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALYIRE 488
            L+I  +      +  +    +L      L         ++ E   I  
Sbjct: 333 HLEISREVGDKSGELTARL--NLSDLQMVLGLSYSTNNSIMSENTEIDS 379

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 7/147 (4%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D  +       +G+ Y+ L++YEK++  + + + + +    +       +   +     +
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GRACWSLGNAYTA 319

Query: 258 IGRAKKAVEIYHRVITILE--LNRGTESA---DLVLPLFSLGSLFIKEGKAVDAESVFSR 312
           +G   +A+    + + I     ++  E     +L      LG  +      +   +    
Sbjct: 320 LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379

Query: 313 ILKIYTKVYGENDGRVGMAMCSLAHAK 339
            L       G       M +  L   K
Sbjct: 380 SLNGVRPKLGRRHSMENMELMKLTPEK 406

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 70.0 bits (171), Expect = 5e-13
 Identities = 54/377 (14%), Positives = 132/377 (35%), Gaps = 30/377 (7%)

Query: 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMS 189
           + G    A++ L+   E ++++ +A    I  +      A  Y ++G L  VQ  +D + 
Sbjct: 63  LKGQNEAALECLRKAEELIQQE-HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121

Query: 190 GIV-DSLKDDEPLLDAILLHMGS--MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246
            +              +    G   +       E++ + +++ +   + +  + +  L  
Sbjct: 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE-KKPKNPEFTSGLAI 180

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           +       L +   ++ A++   + I    LN   +    VL    L  +  +  +  + 
Sbjct: 181 ASY----RLDNWPPSQNAIDPLRQAI---RLNPDNQYL-KVLLALKLHKMREEGEEEGEG 232

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--Y 364
           E +    L+    V           + S A         ++A+EL KKAL  I ++   +
Sbjct: 233 EKLVEEALEKAPGVT--------DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424
             +       +   +    + +   ++  EL+   +   +K   + + +       LA+ 
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD-EANDNLFRVCSILASL 343

Query: 425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL-YHLNRDKEAEKLVLEA 483
           ++ +  + EAE   +               +     L  G    Y +  + +A    +E 
Sbjct: 344 HALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398

Query: 484 LYIREIAFGKDSLPGKL 500
           + I + +  K+ +  KL
Sbjct: 399 VKINQKSREKEKMKDKL 415

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 17/185 (9%)

Query: 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355
           L   E    D E       K++ +   +N          LA+ K   G  E A+E  +KA
Sbjct: 24  LMEGENSLDDFED------KVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKA 77

Query: 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415
             +I+  +    +   +     + A + + +GR  + +  +++   + EK+         
Sbjct: 78  EELIQQEHADQAEIRSLVTW-GNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136

Query: 416 THLLNLAASYSR--SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 473
                   +  +        A+      L+       P +   +     L I  Y L+  
Sbjct: 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTS---GLAIASYRLDNW 188

Query: 474 KEAEK 478
             ++ 
Sbjct: 189 PPSQN 193

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 30/174 (17%)

Query: 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR 260
           +++     M      LE    ++   ++                      +A +     +
Sbjct: 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADE-ANDNL-------FRVCSILASLHALADQ 349

Query: 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKIYTK 319
            ++A   + +  +  EL          L     G+  + + K  D A   F   +KI  K
Sbjct: 350 YEEAEYYFQKEFS-KELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 320 VYG----------------ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
                                +G    A+  LA  +  N   ++A E  ++ L 
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 23/186 (12%), Positives = 50/186 (26%), Gaps = 9/186 (4%)

Query: 303 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362
           A +A        +    +   +      A   L +        +EA   ++   +  + S
Sbjct: 2   AFEAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS 59

Query: 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422
                D +        +  +  + G     R    E   +      ++  +   +   +A
Sbjct: 60  G----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVA 114

Query: 423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482
                  +   A +     L    +    D  +I+     LG          EA++  L 
Sbjct: 115 TVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

Query: 483 ALYIRE 488
           A  I  
Sbjct: 173 ARDIFA 178

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 30/212 (14%), Positives = 70/212 (33%), Gaps = 11/212 (5%)

Query: 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320
           A +A +                 A      F LG ++    +  +A + F  + +   K 
Sbjct: 2   AFEAHDYALAERQAQA--LLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS 59

Query: 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
              +      A+  +   +   GN + A   + +   ++     +  D         ++A
Sbjct: 60  --GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS---LPEDPLAASANAYEVA 114

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
            +    G     R+  E+ L+  ++    +  +       L     + KN +EA++    
Sbjct: 115 TVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

Query: 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472
             DI  +    D ++++  M  L    +H + 
Sbjct: 173 ARDIFAEL--EDSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 18/162 (11%), Positives = 52/162 (32%), Gaps = 5/162 (3%)

Query: 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
                       +G +Y+ ++ ++++   +Q +    +     T+     +L  +  V  
Sbjct: 20  AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE--HRALHQVGMVER 77

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
             G    A   +     +L  +   +        + + ++ +  G    A   + + L  
Sbjct: 78  MAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
             +   ++   +  A   L        N  EA + + +A  +
Sbjct: 137 AQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 23/219 (10%), Positives = 55/219 (25%), Gaps = 24/219 (10%)

Query: 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI- 274
            +               L             +   +  V   + R  +A   +  +    
Sbjct: 6   HDYALAERQAQAL----LAHPAT-----ASGARFMLGYVYAFMDRFDEARASFQALQQQA 56

Query: 275 --LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332
                +     A     L  +G +    G    A   F    ++   +  E+        
Sbjct: 57  QKSGDHTAEHRA-----LHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANA 110

Query: 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG 392
             +A      G+   A + Y+K+L   + ++    D   +      L +L        E 
Sbjct: 111 YEVATVALHFGDLAGARQEYEKSLVYAQQAD----DQVAIACAFRGLGDLAQQEKNLLEA 166

Query: 393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 431
           ++       I  +   ++  +    +  L        + 
Sbjct: 167 QQHWLRARDIFAEL--EDSEAVNELMTRLNGLEHHHHHH 203

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 44/272 (16%), Positives = 77/272 (28%), Gaps = 48/272 (17%)

Query: 209 MGSMYSTLEN-YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
           +G  Y  + +  E +     +    LE  YG        + +             +A+  
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATT-LEKTYGP-------AWIAYGHSFAVESEHDQAMAA 147

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEN 324
           Y     +             LP+  +G  +     +  AE  FS+ L I      V    
Sbjct: 148 YFTAAQL--------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM--- 196

Query: 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 384
                     +      NG  + A + +  AL  IK        D   E +  +L  +  
Sbjct: 197 --------HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-WEPLLNNLGHVCR 247

Query: 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
            + +  E  +   + L++         P   +    +   +S   NF  A       L +
Sbjct: 248 KLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299

Query: 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
                  DD         LG  +     D EA
Sbjct: 300 -----RRDDTFSVT---MLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 31/285 (10%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 264
           +++ +   +    +++    +   V+           + +          L  + +A + 
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG--------TLVELNKANEL 75

Query: 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKIYTKVYGE 323
             + H+++   +L          +  F++G  ++  G   + A    S+   +       
Sbjct: 76  FYLSHKLV---DLYP-----SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL------- 120

Query: 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383
            +   G A  +  H+       ++A+  Y  A + +    ++ +         + +    
Sbjct: 121 -EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ-LMKGCHLPM---------LYIGLEY 169

Query: 384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443
            +    +       + L I         P     +  +     ++  +  AE+     L+
Sbjct: 170 GLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221

Query: 444 IMTKTVGPDDQSISFPML-HLGITLYHLNRDKEAEKLVLEALYIR 487
            +             P+L +LG     L +  EA     +AL + 
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 4e-11
 Identities = 71/506 (14%), Positives = 153/506 (30%), Gaps = 155/506 (30%)

Query: 61  FWAL--------KRFASVGSLEVDTEDQKHH--LSSGFSA-PNDFARSKTLH-DHSSNLW 108
           FW L        ++F       V+   + ++  L S         +    ++ +    L+
Sbjct: 68  FWTLLSKQEEMVQKF-------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 109 DGMNDF-----ERQLLELFNEVKSMI-------------MMGN-KND-AIDLLQANYEAV 148
           +    F      R  L+ + +++  +             ++G+ K   A+D+  +    V
Sbjct: 121 NDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS--YKV 176

Query: 149 KEQ-------INAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201
           + +       +N  N    E  +  +  L Y    +     S  D  S I   +   +  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW---TSRSDHSSNIKLRIHSIQAE 233

Query: 202 LDAILLHMGSMYSTLENYEKSMLV-----YQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
           L  +L          + YE  +LV       +  N          ILL T    +   L 
Sbjct: 234 LRRLLKS--------KPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLS 282

Query: 257 SIGRAKKAVEIYHRVIT------ILELNRGTESADL------VLPL-FSLGSLFIKEGKA 303
           +      +++ +   +T      +L         DL        P   S+ +  I++G A
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 304 -------VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356
                  V+ + + + I++                  SL        N  E  E  K   
Sbjct: 343 TWDNWKHVNCDKL-TTIIES-----------------SL--------NVLEPAEYRK--- 373

Query: 357 RVIKDSNYMSLDDSIM-ENMRIDLAELLHIV---GRGQEGRELLEEC---LLITEKYKGK 409
                  +  L  S+   +  I    LL ++       +   ++ +     L+ ++ K  
Sbjct: 374 ------MFDRL--SVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-- 422

Query: 410 EHPSFVTHLLNLAASYSRS--------KNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
                   + ++               ++ V+   + +   D         DQ       
Sbjct: 423 ---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYS--- 475

Query: 462 HLGITLYHLNRDKEAEKLVL-EALYI 486
           H+G   +HL   +  E++ L   +++
Sbjct: 476 HIG---HHLKNIEHPERMTLFRMVFL 498

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 26/202 (12%), Positives = 61/202 (30%), Gaps = 59/202 (29%)

Query: 53  IPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK-TLHDHSSNL---W 108
           IP   +   W          ++ D     + L            S  ++      L    
Sbjct: 387 IPTILLSLIWF-------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 109 DGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI-----NAGNKGIEEVA 163
           +      R +++ +N  K+     + +D I      Y      I     N  +   E + 
Sbjct: 440 ENEYALHRSIVDHYNIPKTF----DSDDLIPPYLDQY--FYSHIGHHLKNIEH--PERMT 491

Query: 164 ILDIIALGYVYIGDLKFVQ-------SLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL 216
           +  ++ L      D +F++       +  +    I+++L+                   L
Sbjct: 492 LFRMVFL------DFRFLEQKIRHDSTAWNASGSILNTLQQ------------------L 527

Query: 217 ENYEKSML----VYQRVINVLE 234
           + Y+  +      Y+R++N + 
Sbjct: 528 KFYKPYICDNDPKYERLVNAIL 549

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 44/287 (15%), Positives = 92/287 (32%), Gaps = 60/287 (20%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             ++G++Y      ++++  Y+  +  L+  +       +   + +A  L + G  + AV
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHALR-LKPDF-------IDGYINLAAALVAAGDMEGAV 121

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
           + Y   +          + DL      LG+L    G+  +A++ + + ++    +   + 
Sbjct: 122 QAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW- 172

Query: 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 382
                      +L     A G    A+  ++KA+  +  +   +          I+L  +
Sbjct: 173 ----------SNLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAY---------INLGNV 212

Query: 383 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442
           L                L +         P+      NLA  Y        A    R  +
Sbjct: 213 LKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 443 DIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 487
           ++      P      FP  +  L   L       EAE     AL + 
Sbjct: 265 EL-----QPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 48/283 (16%), Positives = 97/283 (34%), Gaps = 56/283 (19%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
            +G++   L   E++   Y + I   +  +         +   +  V  + G    A+  
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIE-TQPNF-------AVAWSNLGCVFNAQGEIWLAIHH 191

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEN 324
           + + +T+          + +    +LG++  +      A + + R L +   +  V+G  
Sbjct: 192 FEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG-- 241

Query: 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 384
                    +LA      G  + A++ Y++A+  ++     +           +LA  L 
Sbjct: 242 ---------NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAY---------CNLANALK 282

Query: 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
             G   E  +     L +         P+    L NLA       N  EA RL R  L++
Sbjct: 283 EKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
                 P+  +      +L   L    + +EA     EA+ I 
Sbjct: 335 F-----PEFAAAHS---NLASVLQQQGKLQEALMHYKEAIRIS 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 5e-10
 Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 60/284 (21%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           + +      + E ++  Y   +                    +  +L ++GR ++A   Y
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQ-YNPDL-------YCVRSDLGNLLKALGRLEEAKACY 158

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            + I            +  +   +LG +F  +G+   A   F + + +   +   Y    
Sbjct: 159 LKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY---- 206

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385
                   +L +        + AV  Y +AL  +  ++ +            +LA + + 
Sbjct: 207 -------INLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVH---------GNLACVYYE 249

Query: 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445
            G      +     + +         P F     NLA +     +  EAE      L + 
Sbjct: 250 QGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 446 TKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 487
                P             L          +EA +L  +AL + 
Sbjct: 302 -----PT-----HADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 45/265 (16%), Positives = 96/265 (36%), Gaps = 56/265 (21%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +G +++       ++  +++ +  L+  +       + + + +  VL       +AV  Y
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVT-LDPNF-------LDAYINLGNVLKEARIFDRAVAAY 226

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            R +++        S +  +   +L  ++ ++G    A   + R +++   +   Y    
Sbjct: 227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY---- 274

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385
                  C+LA+A    G+  EA + Y  ALR +  ++  SL          +LA +   
Sbjct: 275 -------CNLANALKEKGSVAEAEDCYNTALR-LCPTHADSL---------NNLANIKRE 317

Query: 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445
            G  +E   L  + L +         P F     NLA+   +     EA    +  + I 
Sbjct: 318 QGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

Query: 446 TKTVGPDDQSISFPMLHLGITLYHL 470
                P          ++G TL  +
Sbjct: 370 -----PTFADAYS---NMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 60/288 (20%)

Query: 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 264
           +LL + S++      ++S       I                +   +  V    G+ ++A
Sbjct: 35  VLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLL-------AEAYSNLGNVYKERGQLQEA 86

Query: 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVY 321
           +E Y   + +          D +    +L +  +  G    A   +   L+       V 
Sbjct: 87  IEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138

Query: 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 381
                        L +   A G  EEA   Y KA+   + +  ++           +L  
Sbjct: 139 -----------SDLGNLLKALGRLEEAKACYLKAIE-TQPNFAVAW---------SNLGC 177

Query: 382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441
           + +  G         E+ + +         P+F+   +NL      ++ F  A       
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229

Query: 442 LDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 487
           L +      P+       ++H  L    Y       A      A+ ++
Sbjct: 230 LSLS-----PN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352
           L     + G    AE    ++ +                +  L+         + +    
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNT--------GVLLLLSSIHFQCRRLDRSAHFS 56

Query: 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412
             A++        +           +L  +    G+ QE  E     L +         P
Sbjct: 57  TLAIK-QNPLLAEAY---------SNLGNVYKERGQLQEAIEHYRHALRL--------KP 98

Query: 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472
            F+   +NLAA+   + +   A +     L        PD   +      LG  L  L R
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQY-----NPDLYCV---RSDLGNLLKALGR 150

Query: 473 DKEAEKLVLEALYIR 487
            +EA+   L+A+  +
Sbjct: 151 LEEAKACYLKAIETQ 165

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 35/242 (14%), Positives = 66/242 (27%), Gaps = 46/242 (19%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307
            + +A      G  + A     ++             D    L  L S+  +  +   + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSA 53

Query: 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367
              +  +K    +          A  +L +     G  +EA+E Y+ ALR +K       
Sbjct: 54  HFSTLAIKQNPLLA--------EAYSNLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGY 104

Query: 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 427
                    I+LA  L   G  +   +     L          +P       +L      
Sbjct: 105 ---------INLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKA 147

Query: 428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALY 485
                EA+      ++       P+     F +    LG           A     +A+ 
Sbjct: 148 LGRLEEAKACYLKAIET-----QPN-----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 486 IR 487
           + 
Sbjct: 198 LD 199

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 24/195 (12%), Positives = 64/195 (32%), Gaps = 13/195 (6%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV 309
            A    +  + ++A + Y +             +A         G +     +  +A   
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKA---FEQAGMMLKDLQRMPEAVQY 98

Query: 310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369
             +   +Y +    +     MA+           +  +AV LY++A  V ++   +    
Sbjct: 99  IEKASVMYVENGTPD--TAAMALDRAGKL-MEPLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 429
            ++       + LL    +  E    L++   + ++ +   +P+     +          
Sbjct: 156 ELIGKA----SRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRA 209

Query: 430 NFVEAERLLRICLDI 444
           ++V A++ +R    I
Sbjct: 210 DYVAAQKCVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 26/239 (10%), Positives = 70/239 (29%), Gaps = 17/239 (7%)

Query: 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMS 189
                  A D      +  +   N  +         +   +    +  +      ++  S
Sbjct: 48  NAKQLEQAKDAYL---QEAEAHANNRSL-FHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103

Query: 190 GIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249
            +   +++  P   A+ L          +  K++ +YQ+   V E+            + 
Sbjct: 104 VM--YVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA--AELIG 159

Query: 250 GMAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAES 308
             +++L    +  +A     +  ++  E+              +   + +     V A+ 
Sbjct: 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK---CIAQVLVQLHRADYVAAQK 216

Query: 309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367
                      + G +      A+  L  A     + E+ + + +  L    D++Y  L
Sbjct: 217 CVRE----SYSIPGFSGSEDCAALEDLLQA-YDEQDEEQLLRVCRSPLVTYMDNDYAKL 270

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 22/195 (11%), Positives = 52/195 (26%), Gaps = 13/195 (6%)

Query: 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352
               F    +   A+  + +  + +      +      A               EAV+  
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYI 99

Query: 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412
           +KA  +  ++                  +L+       +   L ++       ++ +E  
Sbjct: 100 EKASVMYVENG----TPDTAAMALDRAGKLME-PLDLSKAVHLYQQAA---AVFENEERL 151

Query: 413 SFVT-HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 471
                 +   +    R + F EA   L+    +  +             +   +   H  
Sbjct: 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC--IAQVLVQLHRA 209

Query: 472 RDKEAEKLVLEALYI 486
               A+K V E+  I
Sbjct: 210 DYVAAQKCVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 22/153 (14%), Positives = 43/153 (28%), Gaps = 14/153 (9%)

Query: 341 ANGNAEEAVELYKKALRVIKDSNYMSLDD-----SIMENMRIDLAELLHIVGRGQEGREL 395
           A     EA E   KA + +K S      D     S         A       + ++ ++ 
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA----AVAFKNAKQLEQAKDA 58

Query: 396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455
             +        +   H +               +   EA + +     +  +   PD  +
Sbjct: 59  YLQEAEAHANNRSLFHAA--KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116

Query: 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
           ++   L     L       +A  L  +A  + E
Sbjct: 117 MA---LDRAGKLMEPLDLSKAVHLYQQAAAVFE 146

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 49/377 (12%), Positives = 107/377 (28%), Gaps = 63/377 (16%)

Query: 131 MGNKNDAIDLLQA-------NYEAVKEQI-NAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182
           + N + A +  +         YEA  + + N      EE  ++  +        D  F++
Sbjct: 213 LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272

Query: 183 SLLDMMSGIVDSLKDDEPLLDA------------ILLHMGSMYSTLENYEKSMLVYQRVI 230
           SL  +         +     D             +LL           +   + +  +++
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332

Query: 231 NVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 290
            +            +         L   G   K   I + ++   + +      +  +  
Sbjct: 333 EIDPYN--------LDVYPLHLASLHESGEKNKLYLISNDLV---DRHP-----EKAVTW 376

Query: 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350
            ++G  ++   K  +A   FS+   +        D + G A    AH+    G  ++A+ 
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAIS 428

Query: 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410
            Y  A R +    ++           + L      +G      E L+    +        
Sbjct: 429 AYTTAAR-LFQGTHLPY---------LFLGMQHMQLGNILLANEYLQSSYAL-------- 470

Query: 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 470
                  L  L        +   A    +  L ++ KT   +    +    +LG     L
Sbjct: 471 FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA-TWANLGHAYRKL 529

Query: 471 NRDKEAEKLVLEALYIR 487
                A   + + L + 
Sbjct: 530 KMYDAAIDALNQGLLLS 546

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 44/293 (15%)

Query: 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254
           L+ D   LD   LH  +         K  L+   +++               + L +   
Sbjct: 332 LEIDPYNLDVYPLH-LASLHESGEKNKLYLISNDLVD-RHPEK-------AVTWLAVGIY 382

Query: 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314
              + +  +A   + +      ++     A            F  EG+   A S ++   
Sbjct: 383 YLCVNKISEARRYFSKSS---TMDPQFGPA-----WIGFAHSFAIEGEHDQAISAYTTAA 434

Query: 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 374
           +++   +        +    L       GN   A E  + +   +   + + L       
Sbjct: 435 RLFQGTH--------LPYLFLGMQHMQLGNILLANEYLQSSYA-LFQYDPLLL------- 478

Query: 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434
              +L  +       Q      +  LL+ +K        +     NL  +Y + K +  A
Sbjct: 479 --NELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAA 535

Query: 435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
              L   L +       +D ++      + +   H      A   + E+L I 
Sbjct: 536 IDALNQGLLL-----STNDANVHT---AIALVYLHKKIPGLAITHLHESLAIS 580

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 38/360 (10%), Positives = 99/360 (27%), Gaps = 84/360 (23%)

Query: 189 SGIVDSLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVIN---------------- 231
           +     ++D    L+A + +  G +Y+ L N++++   Y+  +                 
Sbjct: 185 NANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244

Query: 232 ----------VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281
                     VL+  Y   S      L  +  +  +    +  +      ++ +      
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-- 302

Query: 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341
           +S+DL   L           + +D  ++ ++IL+I      +              +   
Sbjct: 303 KSSDL---LLCKADTLFVRSRFIDVLAITTKILEIDPY-NLD-------VYPLHLASLHE 351

Query: 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401
           +G   +   +    +        ++          + +      V +  E R    +   
Sbjct: 352 SGEKNKLYLISNDLVD-RHPEKAVTW---------LAVGIYYLCVNKISEARRYFSKSST 401

Query: 402 ITEKY------KG------KEH--------------PSFVTHLLNLAASYSRSKNFVEAE 435
           +  ++               EH                     L L   + +  N + A 
Sbjct: 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461

Query: 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495
             L+    +        D      +  LG+  ++ +  + A      AL + +     + 
Sbjct: 462 EYLQSSYALF-----QYD---PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 56.8 bits (138), Expect = 8e-10
 Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263
               ++G+ +  L N+  +++ +++ + + +    K +     +   +      +G  + 
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAYIFLGEFET 67

Query: 264 AVEIYHRVITILELNRGT-ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322
           A E Y +    L L R   + A      +SLG+ +        A     + L I  ++  
Sbjct: 68  ASEYYKKT---LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361
                 G A  SL +A  A GN ++A+   +K L + ++
Sbjct: 125 RIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 11/169 (6%)

Query: 322 GENDGRVGMAMC--SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
           G    R        +L +     GN  +AV  +++ L + K+    + +     N    L
Sbjct: 1   GPGS-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSN----L 55

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
                 +G  +   E  ++ LL+  + K            +L  +Y+  +++ +A     
Sbjct: 56  GNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
             L I  +      +  +     LG     L    +A     + L I  
Sbjct: 114 KHLAIAQELKDRIGEGRAC--WSLGNAYTALGNHDQAMHFAEKHLEISR 160

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 8/158 (5%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
             +LG+     G   DA     + L I  +   +      +A  +L +A    G  E A 
Sbjct: 12  FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGNAYIFLGEFETAS 69

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           E YKK L + +     +++     +    L     ++   ++  +   + L I ++ K  
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYS----LGNTYTLLQDYEKAIDYHLKHLAIAQELK-- 123

Query: 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
           +         +L  +Y+   N  +A       L+I  +
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 170 LGYVY--IGD----LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSM 223
           LG  +  +G+    +   +  L +          D+        ++G+ Y  L  +E + 
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEF-----GDKAAERIAYSNLGNAYIFLGEFETAS 69

Query: 224 LVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT-E 282
             Y++ + +      +       S   +      +   +KA++ + +    L + +   +
Sbjct: 70  EYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKH---LAIAQELKD 124

Query: 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320
                   +SLG+ +   G    A     + L+I  +V
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 39/291 (13%), Positives = 87/291 (29%), Gaps = 45/291 (15%)

Query: 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVI----NVLESRYGKTSILLVTSL---LGM 251
           +    A  L  G +       +++   +++V+    +  E +  ++ ++    +      
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311
           A           A+    +++ +                      FIKEG+   A S   
Sbjct: 127 ALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 312 RILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN---YM 365
              K+    T+ +             ++      G+ E ++   ++ L+ +   +   + 
Sbjct: 179 AASKLKSDNTEAF-----------YKISTLYYQLGDHELSLSEVRECLK-LDQDHKRCFA 226

Query: 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425
                   N  I+ AE L   GR  +     E  +    K +       V     +   +
Sbjct: 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSVAEYTVRSKERICHCF 282

Query: 426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
           S+ +  VEA R+    L +      PD+      +              EA
Sbjct: 283 SKDEKPVEAIRICSEVLQME-----PDN---VNALKDRAEAYLIEEMYDEA 325

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 43/298 (14%), Positives = 84/298 (28%), Gaps = 57/298 (19%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
            L +G           ++  +   ++  +            +    A V  ++G++K A+
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVD-GDPDN-------YIAYYRRATVFLAMGKSKAAL 57

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
               +VI    L     +A         G L +K+GK  +AE  F ++LK      +   
Sbjct: 58  PDLTKVI---ALKMDFTAA-----RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK- 108

Query: 323 ENDGRVGMAMCSLAHAKCA-----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
           E + ++  A         A       +   A+    K L V        L        R 
Sbjct: 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAEL--------RE 158

Query: 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437
             AE     G  ++    L+           K           ++  Y +  +   +   
Sbjct: 159 LRAECFIKEGEPRKAISDLKAAS--------KLKSDNTEAFYKISTLYYQLGDHELSLSE 210

Query: 438 LRICLDIMTKTVGPDDQS---------ISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
           +R CL +       D +              ++     L    R  +A       +  
Sbjct: 211 VRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 34/275 (12%), Positives = 80/275 (29%), Gaps = 44/275 (16%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           L           +Y  ++    +++  +                  A+     G  +KA+
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILE-VCVWD-------AELRELRAECFIKEGEPRKAI 174

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
                     +L      +D     + + +L+ + G    + S     LK+   + + + 
Sbjct: 175 SDLKAAS---KLK-----SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF- 225

Query: 323 ENDGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
            +  +V     +   A     +G   +A   Y+  ++   + +         E     + 
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKER----IC 279

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
                  +  E   +  E L +         P  V  L + A +Y   + + EA +    
Sbjct: 280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331

Query: 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475
             +        +DQ I      L      L + ++
Sbjct: 332 AQEHN-----ENDQQIRE---GLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 32/246 (13%), Positives = 70/246 (28%), Gaps = 43/246 (17%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
             L + K L + G+   A+  +H  +   + +      D  +  +   ++F+  GK+  A
Sbjct: 5   KHLELGKKLLAAGQLADALSQFHAAV---DGD-----PDNYIAYYRRATVFLAMGKSKAA 56

Query: 307 ESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD-- 361
               ++++ +   +T                  H     G  +EA + +KK L+      
Sbjct: 57  LPDLTKVIALKMDFTAAR-----------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

Query: 362 ---SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 418
                   L  +         A               L++ L +                
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELR 157

Query: 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478
              A  + +     +A   L+    +       D+   +     +    Y L   + +  
Sbjct: 158 ELRAECFIKEGEPRKAISDLKAASKLK-----SDN---TEAFYKISTLYYQLGDHELSLS 209

Query: 479 LVLEAL 484
            V E L
Sbjct: 210 EVRECL 215

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 41/234 (17%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
           +       G  ++A     + +   E++             +L  +F  E +   A+  +
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKAL---EID-----PSSADAHAALAVVFQTEMEPKLADEEY 94

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
            + L          D R    + +           EEA +   +A +             
Sbjct: 95  RKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER----SR 142

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430
           + EN+ +   ++     +  + +E  E+ L +        + +  +  L +A    + + 
Sbjct: 143 VFENLGLVSLQM----KKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKERE 190

Query: 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484
           +V A +   +         G      +   L LGI L  +  D++        L
Sbjct: 191 YVPARQYYDLFAQG-----GGQ----NARSLLLGIRLAKVFEDRDTAASYGLQL 235

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 22/154 (14%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +  ++ T    + +   Y++ +   +SR  +        L      L    R ++A +  
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALA-SDSRNARV-------LNNYGGFLYEQKRYEEAYQRL 128

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328
                   L              +LG + ++  K   A+  F + L++        +   
Sbjct: 129 LEASQDT-LYPERSRV-----FENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQ 174

Query: 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362
                 +A           A + Y    +    +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 55.7 bits (133), Expect = 2e-08
 Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 3/157 (1%)

Query: 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398
            C  G  ++     K+  +  ++     +  S     +ID A    +     E  +L  E
Sbjct: 278 HCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLY---HEVVKLCRE 334

Query: 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
           CL   E      +   +  L   +   S  + + EA    R  +D   K    ++  +  
Sbjct: 335 CLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394

Query: 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495
            ++  G+T +H    +    ++ +A  I  +  G   
Sbjct: 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
           S G   + V++    +   E      +  ++  L     +        +A     R++  
Sbjct: 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI-----KDSNYMSLDDSI 371
           Y K+Y  N+ ++GMA+          G+ E    +  KA  ++                 
Sbjct: 381 YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT----KD 436

Query: 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 413
           +E MR+     L +  + +     + E  L  +  +    PS
Sbjct: 437 LEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEPS 478

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 43/380 (11%), Positives = 106/380 (27%), Gaps = 57/380 (15%)

Query: 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176
           Q+L     + S   + + +  +  +  +           +  ++    L         + 
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNY-DTAYALLSDALQ---RLYSATDEGYLVA 214

Query: 177 DLKFVQSLLDMMSGIVDSLKDDE--PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234
           +    +S     S +  +  DD         L + G  +    N   + ++ Q  IN L 
Sbjct: 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN-LH 273

Query: 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 294
                       S + +A  L     +++  + + + +   +LN   E        +  G
Sbjct: 274 PTP--------NSYIFLALTLADKENSQEFFKFFQKAV---DLNP--EYPPT---YYHRG 317

Query: 295 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354
            ++       +A+  F +   +  +               LA      G   E+   + +
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENV--------YPYIQLACLLYKQGKFTESEAFFNE 369

Query: 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG------ 408
                K           +       AE+L   G      +  +    + E  +       
Sbjct: 370 TKL--KFPTL-----PEVPTFF---AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419

Query: 409 --KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 466
                 + +    +   +    + F  A +LL    ++        D       + L   
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQL 471

Query: 467 LYHLNRDKEAEKLVLEALYI 486
              + +  EA +L  ++  +
Sbjct: 472 KLQMEKIDEAIELFEDSAIL 491

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 46/309 (14%), Positives = 91/309 (29%), Gaps = 50/309 (16%)

Query: 194 SLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252
            L   +    A+ L   G+ + T +N+ +++  YQ  I  L+                ++
Sbjct: 15  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE-LDPNE-------PVFYSNIS 66

Query: 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312
               S G  +K +E   + +   E+       D    L    S     G   DA    S 
Sbjct: 67  ACYISTGDLEKVIEFTTKAL---EIK-----PDHSKALLRRASANESLGNFTDAMFDLSV 118

Query: 313 I-----------------------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           +                       +K+  +   +++GR    + S        G  +  +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           E+         D+ Y  L D++           L       +  ++    L         
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDP 237

Query: 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469
              +    L      +    N ++A+ LL+  +++      P   S       L +TL  
Sbjct: 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYI----FLALTLAD 288

Query: 470 LNRDKEAEK 478
               +E  K
Sbjct: 289 KENSQEFFK 297

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 390 QEGRELLEECLLITEKYKGKEHPSFVTHL---LNLAASYSRSKNFVEAERLLRICLDIMT 446
           +   ELLE C L  EK       S V  L             +++  A +  +  +   +
Sbjct: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371

Query: 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495
           K       +++   L LG     L      EK + +A+ I E+A GKD 
Sbjct: 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 14/106 (13%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237
           L+  +   + MS +    +D    +  ++     +   ++++E ++   Q++I      Y
Sbjct: 318 LEICELSQEKMSSV---FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY 374

Query: 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283
              S+ + +  L + ++   +       +   + I I+E+  G + 
Sbjct: 375 PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401
             +  E +E+ + +    K S+     +  M +M      +   +   +   +  ++ + 
Sbjct: 311 YKSPSELLEICELSQE--KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368

Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
              K+      +  +  L L   Y   +N    E+ L+  + IM    G D
Sbjct: 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 14/104 (13%), Positives = 32/104 (30%)

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
                 + +EI       +       +  ++  ++    + +       A     +I+K 
Sbjct: 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           Y+K Y      V      L        N     +  KKA+ +++
Sbjct: 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 38/212 (17%)

Query: 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI--------YTKVYGENDGRVGMAMC 333
           +S D    +    S  I+ G+   A S F + + +        Y     +N         
Sbjct: 2   QSVDE---MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLAT 58

Query: 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 393
            LA A   N N ++A   YK+ L+  K  N          +     AE+    G+ ++  
Sbjct: 59  ELALAYKKNRNYDKAYLFYKELLQ--KAPNN--------VDCLEACAEMQVCRGQEKDAL 108

Query: 394 ELLEECLLITEKYKGKEHPSFVTHLLNLA-ASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
            + E+ L +            +   + L    Y  ++   +        L          
Sbjct: 109 RMYEKILQL--------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-----TK 155

Query: 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484
            Q   +     G++     R ++A   + + +
Sbjct: 156 MQYARY---RDGLSKLFTTRYEKARNSLQKVI 184

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 23/164 (14%)

Query: 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253
           ++  +  +   +   +   Y    NY+K+ L Y+ ++              V  L   A+
Sbjct: 45  NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-KAPNN-------VDCLEACAE 96

Query: 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313
           +    G+ K A+ +Y +++   +L     +A        LG+ +    +    +      
Sbjct: 97  MQVCRGQEKDALRMYEKIL---QLEADNLAA-----NIFLGNYYYLTAEQEKKK------ 142

Query: 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
           L+   K    +  ++  A      +K      E+A    +K + 
Sbjct: 143 LETDYKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 25/161 (15%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINV--------LESRYGKTSILLVTSLLGMAKVLGS 257
           +L   S         +++  +++ I +          +   K S +       +A     
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
                KA   Y  ++   +        + V  L +   + +  G+  DA  ++ +IL++ 
Sbjct: 67  NRNYDKAYLFYKELL---QKAP-----NNVDCLEACAEMQVCRGQEKDALRMYEKILQL- 117

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALR 357
                  +     A   L +        E + +E   K L 
Sbjct: 118 -------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 23/206 (11%), Positives = 63/206 (30%), Gaps = 35/206 (16%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITI------LELNRGTESADLVLP--LFSLGSLFIK 299
           +L         G+  +AV  + + I +      +      +    +       L   + K
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359
                 A   +  +L+        N+      + + A  +   G  ++A+ +Y+K L++ 
Sbjct: 67  NRNYDKAYLFYKELLQKA-----PNNVD---CLEACAEMQVCRGQEKDALRMYEKILQL- 117

Query: 360 KDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHL 418
            +++ ++          I L    ++   + ++  E   + L                  
Sbjct: 118 -EADNLAA--------NIFLGNYYYLTAEQEKKKLETDYKKLSS--------PTKMQYAR 160

Query: 419 LNLAASYSRSKNFVEAERLLRICLDI 444
                S   +  + +A   L+  +  
Sbjct: 161 YRDGLSKLFTTRYEKARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 23/163 (14%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS----NYMSLDDSIMENMRI--DLAELLH 384
            M     A    G   +AV  +++ + +  D      + ++D +   + ++  +LA    
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
                 +     +E L        ++ P+ V  L   A          +A R+    L +
Sbjct: 66  KNRNYDKAYLFYKELL--------QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117

Query: 445 MTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYI 486
                  D+ +     + LG   Y    ++K+  +   + L  
Sbjct: 118 -----EADNLAA---NIFLGNYYYLTAEQEKKKLETDYKKLSS 152

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 52/417 (12%), Positives = 113/417 (27%), Gaps = 69/417 (16%)

Query: 81  KHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDL 140
           K  +S       D   +       S         +++ L     + S   +         
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 141 LQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE- 199
              + EA KE +N  +        L   +       D  F ++       +  + +D++ 
Sbjct: 180 YDESNEADKELMNGLSN-------LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232

Query: 200 -PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI 258
              L   L H G       +   +    ++ I  L  R          S + MA ++   
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRV--------NSYIYMALIMADR 283

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
             + +    + + +   +L+    ++ +    +  G +         A   F +  ++  
Sbjct: 284 NDSTEYYNYFDKAL---KLDS--NNSSV---YYHRGQMNFILQNYDQAGKDFDKAKEL-- 333

Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378
                 D         LA         ++   L+ +A R  K              +   
Sbjct: 334 ------DPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEA--------PEVPNF 377

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------K 429
            AE+L       +  +  +  + +                + +A    ++         +
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIEL--------ENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 430 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
           NF+EA  LL     +        D       + L           EA  L  E+  +
Sbjct: 430 NFIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 35/287 (12%), Positives = 81/287 (28%), Gaps = 38/287 (13%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           +L        +   ++                 + S           + L S+       
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPT----ELSTQPAKERKDKQENLPSVTSMASFF 168

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV----- 320
            I+   +T    +   E AD  L                 A+  F++  +++ +      
Sbjct: 169 GIFKPELTFANYDESNE-ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227

Query: 321 -YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
              +   ++ +++      K    +   A E  KKA+ +       S          I +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPRVNSY---------IYM 276

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           A ++       E     ++ L +          +  +   +        +N+ +A +   
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFD 328

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
              ++      P++    FP + L    Y  N+  + E L  EA   
Sbjct: 329 KAKEL-----DPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRK 367

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 43/290 (14%)

Query: 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN-------VLESRYGKTSILLVTSLLGM 251
           +    A  L  G +       +++   +++V+          E++        +  L   
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311
           A      G    A+    +++ +                      FIKEG+   A S   
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 312 RILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMS 366
              K+    T+ +             ++      G+ E ++   ++ L++ +D    +  
Sbjct: 202 AASKLKNDNTEAF-----------YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250

Query: 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426
                  N  I+ AE L   GR  +     E  +    K +       V     +   +S
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSIAEYTVRSKERICHCFS 306

Query: 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
           + +  VEA R+    L +      PD+      +              EA
Sbjct: 307 KDEKPVEAIRVCSEVLQME-----PDN---VNALKDRAEAYLIEEMYDEA 348

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 44/276 (15%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           L           +Y  ++    +++  +                  A+     G  +KA+
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILE-VCVWD-------AELRELRAECFIKEGEPRKAI 197

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
                   +          D     + + +L+ + G    + S     LK+   + + + 
Sbjct: 198 SDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF- 248

Query: 323 ENDGRVGMAMCSLAHAKCA--NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
            +  +V      +  A+    +G   +A   Y+  ++   + +         E     + 
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER----IC 302

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
                  +  E   +  E L +         P  V  L + A +Y   + + EA +    
Sbjct: 303 HCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
             +        +DQ I      L      L + ++ 
Sbjct: 355 AQEHN-----ENDQQIRE---GLEKAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 38/287 (13%), Positives = 81/287 (28%), Gaps = 62/287 (21%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
             G    T   Y +SM   ++ +                    + K L + G+   A+  
Sbjct: 8   SSGVDLGTENLYFQSMADVEKHLE-------------------LGKKLLAAGQLADALSQ 48

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEN 324
           +H  +   + +      D  +  +   ++F+  GK+  A    ++++++   +T      
Sbjct: 49  FHAAV---DGD-----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR--- 97

Query: 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-----NYMSLDDSIMENMRIDL 379
                       H     G  +EA + +KK L+              L  S         
Sbjct: 98  --------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           A      G        L++ L +                   A  + +     +A   L+
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVC--------VWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
               +       D+   +     +    Y L   + +   V E L +
Sbjct: 202 AASKLK-----NDN---TEAFYKISTLYYQLGDHELSLSEVRECLKL 240

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 34/195 (17%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L +L ++  ++G   +A  ++ + L++              A  +LA      G  +EA+
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
             YK+A+R+     +         +   ++   L  +   Q   +     + I       
Sbjct: 64  MHYKEAIRI--SPTFA--------DAYSNMGNTLKEMQDVQGALQCYTRAIQI------- 106

Query: 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469
            +P+F     NLA+ +  S N  EA    R  L +      PD         +L   L  
Sbjct: 107 -NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-----PDFPDA---YCNLAHCLQI 157

Query: 470 LNRDKEAEKLVLEAL 484
           +    + ++ + + +
Sbjct: 158 VCDWTDYDERMKKLV 172

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 26/157 (16%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 390
           ++ +LA+ K   GN EEAV LY+KAL V     +             +LA +L   G+ Q
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFA--------AAHSNLASVLQQQGKLQ 60

Query: 391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450
           E     +E + I         P+F     N+  +    ++   A +     + I      
Sbjct: 61  EALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----N 107

Query: 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
           P          +L           EA      AL ++
Sbjct: 108 PAFADA---HSNLASIHKDSGNIPEAIASYRTALKLK 141

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 9e-06
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 24/173 (13%)

Query: 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI 258
            P   A   ++ S+       +++++ Y+  I  +   +         +   M   L  +
Sbjct: 39  FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTF-------ADAYSNMGNTLKEM 90

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
              + A++ Y R I I        +        +L S+    G   +A + +   LK+  
Sbjct: 91  QDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-- 140

Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371
                       A C+LAH      +  +  E  KK + ++ D    +   S+
Sbjct: 141 ------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 187

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 18/159 (11%), Positives = 50/159 (31%), Gaps = 21/159 (13%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +GS +    N+  ++   ++ I    +               + +         KA   +
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIR-PTTTD-------PKVFYELGQAYYYNKEYVKADSSF 165

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIK---EGKAVDAESVFSRILKIYTKVYGEND 325
            +V+   EL       ++ +              + K   A+  + +++++      +  
Sbjct: 166 VKVL---ELK-----PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364
             +  A   +A+    N +  +A   +K  L +  D   
Sbjct: 218 DELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTN 254

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 27/166 (16%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
            G +         ++  YQ  ++  ++         +     +     + G    A++  
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVD-RDTTR-------LDMYGQIGSYFYNKGNFPLAIQYM 131

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            + I                  + LG  +    + V A+S F ++L++       Y    
Sbjct: 132 EKQI---RPTTTDPKV-----FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY-LWR 182

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371
            R   A          +     A   Y+K + V         D+ I
Sbjct: 183 ARANAAQDP-------DTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 24/256 (9%), Positives = 63/256 (24%), Gaps = 48/256 (18%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
                       NY +++ V+ ++    +                 A     + +   A 
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEA-KKYNS-------PYIYNRRAVCYYELAKYDLAQ 57

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
           +      + +   +   +          G + +K+G+   A   +   +   T       
Sbjct: 58  KDIETYFSKVNATKAKSAD-----FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---- 108

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMSLDDSIMENMRIDLA--- 380
                    +       GN   A++  +K +R        +  L  +   N     A   
Sbjct: 109 ----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164

Query: 381 ----------------------ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 418
                                        +    +   E+ + +      K     +   
Sbjct: 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224

Query: 419 LNLAASYSRSKNFVEA 434
             +A  Y+ +++ V+A
Sbjct: 225 EYIAYYYTINRDKVKA 240

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 13/113 (11%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVI----NVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263
            +G  Y   + Y K+   + +V+    N+      +                    +   
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARAN---------AAQDPDTKQGL 197

Query: 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
           A   Y ++I +          +L+     +   +      V A++ +  IL +
Sbjct: 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 10/109 (9%), Positives = 30/109 (27%)

Query: 387 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
            + ++   + +  +    +     +   +  L     +        EA       ++   
Sbjct: 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR 360

Query: 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495
                        ++ +G    H     +A K +  A  I  +  G++ 
Sbjct: 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 2/112 (1%)

Query: 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400
           A+   E+ + + +  +    +S  +   +     +     +    +G  +E        +
Sbjct: 299 AHWKWEQVLAMCQAIIS--SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356

Query: 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
                +    HP     ++ +         F +A + LR+  DIM  T G +
Sbjct: 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237
           L   Q+++   S     L D       +L         L   E+++    R +      +
Sbjct: 307 LAMCQAIISSNSER---LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363

Query: 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283
             +  +    ++ + K+    G   +A++       I+ +  G E 
Sbjct: 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 14/116 (12%), Positives = 42/116 (36%)

Query: 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 304
           V   L   + L +  + ++ + +   +I+         +   +  L       I  G   
Sbjct: 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLE 346

Query: 305 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           +A    +R ++ Y   +  +    G+ +  +   +   G   +A++  + A  +++
Sbjct: 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 23/146 (15%), Positives = 40/146 (27%), Gaps = 26/146 (17%)

Query: 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401
             +    +   + A+R                   + LA+    +G    G   ++  L 
Sbjct: 2   TADGPRELLQLRAAVRH--RPQDFVA--------WLMLADAELGMGDTTAGEMAVQRGLA 51

Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
           +        HP     +  L       +   EA  LL+   D       P+   I    L
Sbjct: 52  L--------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEHPGI---AL 95

Query: 462 HLGITLYHLNRDKEAEKLVLEALYIR 487
            LG  L    + + A      A  + 
Sbjct: 96  WLGHALEDAGQAEAAAAAYTRAHQLL 121

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 24/205 (11%), Positives = 43/205 (20%), Gaps = 37/205 (18%)

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
               + +      +               +    L    +  G     E    R L +  
Sbjct: 3   ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378
                       A+  L   +       EA  L ++A     +             + + 
Sbjct: 53  ------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----------PGIALW 96

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
           L   L   G+ +           +       E P     LLN        +        +
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLLP-----EEPYITAQLLNWRRRLCDWRALDVLSAQV 151

Query: 439 RICLDIMTKTVGPDDQSISFPMLHL 463
           R  +      V P      F  L  
Sbjct: 152 RAAVAQGVGAVEP------FAFLSE 170

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 20/186 (10%), Positives = 42/186 (22%), Gaps = 34/186 (18%)

Query: 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
                        ++           +  +A   LA A+   G+        ++ L +  
Sbjct: 3   ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
              +              L  +     R  E   LL++             P      L 
Sbjct: 53  HPGHP--------EAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALW 96

Query: 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480
           L  +   +     A         ++     P++  I      L      L   +  + L 
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLL-----PEEPYI---TAQLLNWRRRLCDWRALDVLS 148

Query: 481 LEALYI 486
            +    
Sbjct: 149 AQVRAA 154

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 16/110 (14%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307
            L +A     +G          R + +               +  LG +   + +  +A 
Sbjct: 26  WLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAA 77

Query: 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
            +  +                      L HA    G AE A   Y +A +
Sbjct: 78  VLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 12/184 (6%)

Query: 263 KAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
            A + + +      +     E+ +           F   G +V+A       ++I+T   
Sbjct: 55  LAGDSFLKAADYQKKAGNEDEAGNT---YVEAYKCFKSGGNSVNAVDSLENAIQIFTH-- 109

Query: 322 GENDGRVGMAMCSLA-HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
                R       L    +    +  +A++ Y+ A         ++L +          A
Sbjct: 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK----CA 165

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
           +L  + G+  E  ++  + +            S   + L        + + V A R L+ 
Sbjct: 166 DLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

Query: 441 CLDI 444
               
Sbjct: 225 GQSE 228

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 44/295 (14%), Positives = 81/295 (27%), Gaps = 48/295 (16%)

Query: 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
           ++           G       +   ++L  +  I   +            +   +     
Sbjct: 59  ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL-QDPGD-------AEAWQFLGITQA 110

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
                + A+    R +   EL       + +  L +L   +       DA       +K 
Sbjct: 111 ENENEQAAIVALQRCL---ELQ-----PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162

Query: 317 ---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 373
              Y  +  +N          ++ +   +   E   ELY +A       N   +D  +  
Sbjct: 163 NPKYKYLV-KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----NGDMIDPDLQT 217

Query: 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE 433
                L  L H+ G      +     L +         P   +    L A+ +      E
Sbjct: 218 G----LGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEE 265

Query: 434 AERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYI 486
           A       L+I      P      F      LGI+  +L   +EA    L AL +
Sbjct: 266 AVEAYTRALEIQ-----PG-----FIRSRYNLGISCINLGAYREAVSNFLTALSL 310

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 40/242 (16%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
                   G     +      I     + G   A        LG    +      A    
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAI---LQDPGDAEA-----WQFLGITQAENENEQAAIVAL 122

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN---YMSL 367
            R L++              A+ +LA +     + ++A E  K  ++           + 
Sbjct: 123 QRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIK-QNPKYKYLVKNK 173

Query: 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 427
             S     R+  +         +  +EL  E           +          L   +  
Sbjct: 174 KGSPGLTRRMSKS--PVDSSVLEGVKELYLEAAHQNGDMIDPD------LQTGLGVLFHL 225

Query: 428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALY 485
           S  F  A       L +      P+D       L   LG TL + +R +EA +    AL 
Sbjct: 226 SGEFNRAIDAFNAALTVR-----PED-----YSLWNRLGATLANGDRSEEAVEAYTRALE 275

Query: 486 IR 487
           I+
Sbjct: 276 IQ 277

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 40/308 (12%), Positives = 89/308 (28%), Gaps = 61/308 (19%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
            +G   +  E    +++        L+ +        +     +A    +   A  A+  
Sbjct: 60  SLGLTQAENEKDGLAIIALNHARM-LDPKD-------IAVHAALAVSHTNEHNANAALAS 111

Query: 268 YHRVITI------LELNRGTESADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKI---Y 317
               +        L         D+  L + S    F    +  +  ++    L++    
Sbjct: 112 LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
            +++            SL      + N + A    ++A+  ++  +    +      +  
Sbjct: 172 AQLH-----------ASLGVLYNLSNNYDSAAANLRRAVE-LRPDDAQLWN-----KLGA 214

Query: 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437
            LA       R QE  +     L I        +P +V  + N+A SYS    +  A + 
Sbjct: 215 TLANG----NRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQ 262

Query: 438 LRICLDIMTKTVGPDDQSISFPMLH---------LGITLYHLNRDKEAEKLVLEALYIRE 488
           L   + +          + +                + L  +NR    E    + +    
Sbjct: 263 LVRAIYMQ-----VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317

Query: 489 IAFGKDSL 496
             FG  S+
Sbjct: 318 KEFGLQSM 325

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 41/235 (17%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
               +  +    +A   +  V           + +      SLG    +  K   A    
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIAL 78

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD-----SNYM 365
           +    +        D +      +LA +     NA  A+   +  L          S  +
Sbjct: 79  NHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130

Query: 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425
             D  I +                +E R LL   L +        +P+      +L   Y
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLY 182

Query: 426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEK 478
           + S N+  A   LR  +++      PDD       L   LG TL + NR +EA  
Sbjct: 183 NLSNNYDSAAANLRRAVELR-----PDD-----AQLWNKLGATLANGNRPQEALD 227

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 24/206 (11%), Positives = 64/206 (31%), Gaps = 7/206 (3%)

Query: 74  EVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGN 133
           +++ + Q             +        +     +   +F++ L   +     ++   +
Sbjct: 71  DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD 130

Query: 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193
               I  L+         I+      + + I + IA  Y   G LK    L + +   ++
Sbjct: 131 YEYCILELKKLLNQQLTGID----VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186

Query: 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253
           +L D+E     +  +          YE+S+    + I +       +  L+        +
Sbjct: 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGE 244

Query: 254 VLGSIGRAKKAVEIY-HRVITILELN 278
            L  +   +  +E    +     ++ 
Sbjct: 245 CLRKLEYEEAEIEDAYKKASFFFDIL 270

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 33/239 (13%), Positives = 66/239 (27%), Gaps = 43/239 (17%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           ++   A+ L S  R    V    R     E++R  +  +    L    S++  +     A
Sbjct: 67  AVRMFAEYLASHSRRDAIVAELDR-----EMSRSVDVTNTTF-LLMAASIYFYDQNPDAA 120

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366
                +   +               M             + A +  KK            
Sbjct: 121 LRTLHQGDSLE-------------CMAMTVQILLKLDRLDLARKELKKMQDQ-------- 159

Query: 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426
            +D+ +  +      L     + Q+   + +E           +    +  L   AA + 
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA--------DKCSPTLLLLNGQAACHM 211

Query: 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485
               +  AE +L+  LD                +++L +   HL +  E     L  L 
Sbjct: 212 AQGRWEAAEGVLQEALDK-----DSGHPET---LINLVVLSQHLGKPPEVTNRYLSQLK 262

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467
           G +        L L +++     + +AE +L   +        P+ Q++    +   + L
Sbjct: 20  GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----PNHQAL---RVFYAMVL 71

Query: 468 YHLNRDKEAEKLVLEAL 484
           Y+L R ++  +L+L+ +
Sbjct: 72  YNLGRYEQGVELLLKII 88

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315
           G +G   +AV  Y + I       G +  DL      LGS F   G+   AE+V +  +K
Sbjct: 1   GVLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55

Query: 316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356
            +                  A      G  E+ VEL  K +
Sbjct: 56  QFPNHQA--------LRVFYAMVLYNLGRYEQGVELLLKII 88

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 46/301 (15%), Positives = 87/301 (28%), Gaps = 54/301 (17%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
           ++G+  +  E    ++   +R +  L+           T+L+ +A    +    ++A EI
Sbjct: 103 YLGTTQAENEQELLAISALRRCLE-LKPDN-------QTALMALAVSFTNESLQRQACEI 154

Query: 268 YHRVITI--------LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319
               +               G   A L      LGSL   +   ++ + +F   +++   
Sbjct: 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT 213

Query: 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
              + D       C L      +G  ++AV+ +  AL V    N   L       +   L
Sbjct: 214 -SIDPD-----VQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL----WNKLGATL 261

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           A       + +E        L +         P ++    NL  S        EA     
Sbjct: 262 ANG----NQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFL 309

Query: 440 ICLDIMTKTVGPDDQSISFPMLH--------LGITLYHLNRDKEAEKLVLEALYIREIAF 491
             L++         +                L + L  L +           L      F
Sbjct: 310 EALNMQ-----RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364

Query: 492 G 492
           G
Sbjct: 365 G 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 35/231 (15%)

Query: 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323
               Y +     E N   +        F  G   ++EG   +A  +F   ++   K + E
Sbjct: 45  TSATYDKGYQFEEENPLRDHPQP----FEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HME 99

Query: 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383
                  A   L   +  N     A+   ++ L +    +      + +  + +      
Sbjct: 100 -------AWQYLGTTQAENEQELLAISALRRCLEL--KPDN----QTALMALAVSFTNE- 145

Query: 384 HIVGRGQEGRELLEECLLITEKYK-------GKEHPSFVTHLLNLAASYSRSKNFVEAER 436
                 ++  E+L + L  T  Y             + +     +  S      F+E + 
Sbjct: 146 ---SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202

Query: 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
           L    + +   ++ PD Q        LG+         +A      AL +R
Sbjct: 203 LFLAAVRLDPTSIDPDVQCG------LGVLFNLSGEYDKAVDCFTAALSVR 247

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 33/232 (14%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
                   G    AV ++   +              +     LG+   +  + + A S  
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
            R L++              A+ +LA +        +A E+ +  LR    +    +  +
Sbjct: 122 RRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVTPA 172

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLE--ECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428
                   L     I+G        LE  E  L   +         V     L   ++ S
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV--QCGLGVLFNLS 230

Query: 429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEK 478
             + +A       L +      P+D      +L   LG TL + N+ +EA  
Sbjct: 231 GEYDKAVDCFTAALSVR-----PND-----YLLWNKLGATLANGNQSEEAVA 272

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 27/162 (16%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVI-------NVLESRYGKTSILLVTSLLGMAKVLGSI 258
           L+ +   ++      ++  + +  +       +++           +     +   L S 
Sbjct: 135 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI-- 316
               +  E++   +    L+  +   D+      LG LF   G+   A   F+  L +  
Sbjct: 195 SLFLEVKELFLAAV---RLDPTSIDPDV---QCGLGVLFNLSGEYDKAVDCFTAALSVRP 248

Query: 317 -YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
               ++     ++G  + +          +EEAV  Y++AL 
Sbjct: 249 NDYLLWN----KLGATLANG-------NQSEEAVAAYRRALE 279

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 30/229 (13%), Positives = 58/229 (25%), Gaps = 43/229 (18%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
           +A         ++A       +               L       ++        A+  F
Sbjct: 14  LAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESF 65

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRV-IKDSNYMSLD 368
            + L I      E          +     C       E++  + KAL      + Y++  
Sbjct: 66  RQALSIKPD-SAE-------INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN- 116

Query: 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428
                N  I  A+     G+       L+  L           P F      LA +   +
Sbjct: 117 ----LNKGICSAKQ----GQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLA 160

Query: 429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477
               +A+   +     +        Q+     L LG  +     + +A 
Sbjct: 161 GQLGDADYYFKKYQSRV-----EVLQADD---LLLGWKIAKALGNAQAA 201

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 23/160 (14%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL-GSIGRAKKAVEI 267
              +Y  L+  +K+   +++ ++ ++    +               L G + R  +++  
Sbjct: 48  RAEIYQYLKVNDKAQESFRQALS-IKPDSAEI-------NNNYGWFLCGRLNRPAESMAY 99

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
           + + +           A       + G    K+G+   AE+   R L            +
Sbjct: 100 FDKALADP-TYPTPYIA-----NLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQ 145

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367
              A   LA  K   G   +A   +KK    ++      L
Sbjct: 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 32/159 (20%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
            G++Y   E Y+++  ++++ +                    +  VL  + + K A+   
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALR-AGMEN-------GDLFYMLGTVLVKLEQPKLALPYL 148

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            R +   ELN      +     F  G     EG   +A S F+ + +    +   +    
Sbjct: 149 QRAV---ELN-----ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF---- 196

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364
                   +         N E+A+E+  KA+ +    ++
Sbjct: 197 -------YNAGVTYAYKENREKALEMLDKAIDI--QPDH 226

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 27/281 (9%), Positives = 68/281 (24%), Gaps = 54/281 (19%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
             G     LE  ++ + V  +    L  +        V ++   +    ++   ++ + +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHG-LTPQQ-------VVAIASNSGGKQALETVQRLLPV 298

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
             +   +        +   V+ + S G              V  +   +  +        
Sbjct: 299 LCQAHGL--------TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV------ 344

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
             +A+ S    K A    +  + +  +A   +     +++                  + 
Sbjct: 345 --VAIASHDGGKQALETVQRLLPVLCQAHG-LTPEQVVAI---------ASNGGGKQALE 392

Query: 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR--ICLDIM 445
             Q    +L +   +T        P  V  + +        +       +L     L   
Sbjct: 393 TVQRLLPVLCQAHGLT--------PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT-- 442

Query: 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
                P        +   G     L            AL  
Sbjct: 443 -----PQQVVA---IASNGGGRPALESIVAQLSRPDPALAA 475

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 21/142 (14%)

Query: 341 ANGNAEEAVELYKKALRVIKDS----NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396
            + N  E   +    +  I       +  ++ D +M+++    A   +  GR +E     
Sbjct: 1   GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDI-YSYAYDFYNKGRIEEAEVFF 59

Query: 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456
               +             V +++ LAA Y   + F +A  L  +   +     G +D   
Sbjct: 60  RFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKND--- 103

Query: 457 SFPMLHLGITLYHLNRDKEAEK 478
             P+ H G     L    +A++
Sbjct: 104 YTPVFHTGQCQLRLKAPLKAKE 125

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 32/159 (20%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +G  Y      ++   + +R +              V     +      + +   AV + 
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLA-DAPDN-------VKVATVLGLTYVQVQKYDLAVPLL 99

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            +V           +       F LG      G+  +A   F   L +     KV+    
Sbjct: 100 IKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH---- 147

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364
                   ++A +    G  EEA+  +KKA  +  D   
Sbjct: 148 -------RAIAFSYEQMGRHEEALPHFKKANEL--DEGA 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 30/152 (19%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
            G  ++    Y +++++ ++V +  ++         V   L +       G   +  E+ 
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYD-ADAFD-------VDVALHLGIAYVKTGAVDRGTELL 65

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            R +          + D V     LG  +++  K   A  +  ++ +       V     
Sbjct: 66  ERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR---- 113

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
                    L  A    G  +EA++ +K AL 
Sbjct: 114 -------FRLGVALDNLGRFDEAIDSFKIALG 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	510
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.98
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.98
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.96
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.96
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.95
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.95
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.95
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.94
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.94
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.94
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.94
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.93
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.93
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.93
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.91
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.89
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.89
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.89
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.88
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.87
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.86
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.86
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.86
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.86
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.84
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.84
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.83
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.83
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.83
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.83
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.83
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.82
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.82
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.81
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.81
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.78
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.78
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.77
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.76
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.75
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.74
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.74
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.74
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.74
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.72
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.72
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.71
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.71
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.69
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.68
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.68
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.67
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.66
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.66
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.66
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.66
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.65
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.65
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.62
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.62
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.62
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.59
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.57
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.56
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.55
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.55
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.55
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.54
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.54
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.54
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.53
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.53
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.52
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.51
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.51
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.5
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.49
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.47
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.46
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.45
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.41
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.41
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.39
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.39
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.39
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.37
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.37
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.36
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.35
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.35
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.35
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.33
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.32
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.29
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.27
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.27
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.27
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.26
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.26
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.26
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.25
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.24
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.24
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.23
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.21
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.19
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.18
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.17
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.17
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.16
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.14
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.13
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.1
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.07
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.03
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.98
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.96
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.96
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.94
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.93
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.88
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.81
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.77
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.75
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.73
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.72
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.7
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.69
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.65
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.65
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.63
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.61
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.61
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.59
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.42
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.35
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.34
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.32
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.3
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.23
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.18
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.15
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.15
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.05
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.96
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.95
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.95
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.91
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.87
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.81
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.77
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.55
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.15
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.79
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.75
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.4
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.36
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.28
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.27
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.2
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.0
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.99
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	95.91
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.7
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.2
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.13
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.09
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.52
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.44
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.0
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.8
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.65
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.65
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.56
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.41
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.98
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.62
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.61
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.37
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	91.62
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.09
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.17
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	89.82
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.71
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	88.16
2npm_A	260	14-3-3 domain containing protein; cell regulator p	87.06
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.99
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.97
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	86.03
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	85.17
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	84.76
2o8p_A	227	14-3-3 domain containing protein; signaling protei	84.65
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	84.55
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	84.43
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	83.32
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	81.21
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	81.15

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.6e-30  Score=243.14  Aligned_cols=342  Identities=17%  Similarity=0.192  Sum_probs=292.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ..++..|..+...|++++|+.+++++++.       .+..+ ..+.++..+|.++...|++++|+.++++++.+.... .
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~   81 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-G   81 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-c
Confidence            34677899999999999999999999987       23233 346789999999999999999999999999988764 4


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCC-----------------
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-----------------  260 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  260 (510)
                      +.+....++..+|.++...|++++|+.++++++++....  .+.+..+.++..+|.+|...|+                 
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a  159 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV  159 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence            557778889999999999999999999999999998775  3445678899999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 010446          261 ---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  337 (510)
Q Consensus       261 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  337 (510)
                         +++|+.++++++++.....  +.+....++.++|.++...|++++|+.++++++++....  ++.+....++.++|.
T Consensus       160 ~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~  235 (406)
T 3sf4_A          160 RDALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGN  235 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHH
Confidence               9999999999999987753  456778899999999999999999999999999998775  344567779999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010446          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (510)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (510)
                      ++...|++++|+.++++++.+....    .++.....++..+|.++...|++++|+.++++++.+.....  +.+....+
T Consensus       236 ~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~  309 (406)
T 3sf4_A          236 AYIFLGEFETASEYYKKTLLLARQL----KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--DRIGEGRA  309 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhC----cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--CcHHHHHH
Confidence            9999999999999999999998763    45566678889999999999999999999999999887752  45666788


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010446          418 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  482 (510)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  482 (510)
                      +..+|.+|...|++++|+.++++++++....  .+.+....++..+|.++...|+...+...+.+
T Consensus       310 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~  372 (406)
T 3sf4_A          310 CWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMS  372 (406)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence            9999999999999999999999999998775  34567788899999999999987544433333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=5.4e-30  Score=243.37  Aligned_cols=301  Identities=18%  Similarity=0.192  Sum_probs=265.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ..+...+..+...|++++|+..|++++..          .|....++..+|.++...|++++|+..+++++...      
T Consensus        68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------  131 (388)
T 1w3b_A           68 EAYSNLGNVYKERGQLQEAIEHYRHALRL----------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN------  131 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence            34777889999999999999999999987          77888899999999999999999999999998764      


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                       |....++..+|.++...|++++|+..|+++++.        .|....++..+|.++...|++++|+..+++++++    
T Consensus       132 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  198 (388)
T 1w3b_A          132 -PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----  198 (388)
T ss_dssp             -TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred             -CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence             344455789999999999999999999999875        3555778999999999999999999999999987    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                          .|....++..+|.++...|++++|+..+++++.+        +|....++.++|.++...|++++|+..++++++.
T Consensus       199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  266 (388)
T 1w3b_A          199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                4666789999999999999999999999999985        3445678889999999999999999999999886


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (510)
                             .|+.+   .++.++|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+
T Consensus       267 -------~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~  328 (388)
T 1w3b_A          267 -------QPHFP---DAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             -------CSSCH---HHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             -------CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                   34443   46789999999999999999999999886        2445678889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      ++++++        .|....++..+|.++...|++++|+.+|++++++
T Consensus       329 ~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          329 RKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999873        5667788999999999999999999999999874

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.98  E-value=6.8e-29  Score=237.72  Aligned_cols=316  Identities=18%  Similarity=0.198  Sum_probs=276.9

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      .+.....+..+|..+...|++++|+..+++++...   ..+....+.++..+|.+|...|++++|+.++++++++.... 
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-  119 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-  119 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence            35667788899999999999999999999999874   33444456789999999999999999999999999998775 


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC---------------
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---------------  302 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------  302 (510)
                       .+.+....++..+|.+|...|++++|+.++++++++.....  +.+....++..+|.+|...|+               
T Consensus       120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~  196 (411)
T 4a1s_A          120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK  196 (411)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred             -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence             44577889999999999999999999999999999987764  456778899999999999999               


Q ss_pred             --hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 010446          303 --AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  380 (510)
Q Consensus       303 --~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la  380 (510)
                        +++|+.++++++++.+..  .+.+....++.++|.++...|++++|+.++++++++....    .+......++.++|
T Consensus       197 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la  270 (411)
T 4a1s_A          197 EALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF----GDRAAERRANSNLG  270 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHH
Confidence              999999999999988776  3456678899999999999999999999999999998763    45556677889999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHH
Q 010446          381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  460 (510)
Q Consensus       381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  460 (510)
                      .++...|++++|+.++++++.+....  ........++..+|.+|...|++++|+.++++++.+....  .+.+....++
T Consensus       271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~  346 (411)
T 4a1s_A          271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARAC  346 (411)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHH
Confidence            99999999999999999999998765  2445567889999999999999999999999999988776  3456677889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446          461 LHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (510)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~  490 (510)
                      ..+|.+|...|++++|..++++++++.++.
T Consensus       347 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          347 WSLGNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999987654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.98  E-value=3.6e-29  Score=237.68  Aligned_cols=291  Identities=16%  Similarity=0.143  Sum_probs=191.8

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (510)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (510)
                      ...|++++|..++++++..          .|..+.++..+|.++...|++++|+..|++++.+.       |....++..
T Consensus        44 ~~~~~~~~a~~~~~~a~~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~  106 (388)
T 1w3b_A           44 FQCRRLDRSAHFSTLAIKQ----------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYIN  106 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------cchHHHHHH
Confidence            4455555555555555554          45555666666666666666666666666665542       223334566


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 010446          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (510)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (510)
                      +|.++...|++++|+..|+++++.        .|....++..+|.++...|++++|+..++++++.        .|....
T Consensus       107 l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~  170 (388)
T 1w3b_A          107 LAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAV  170 (388)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHH
Confidence            666666666666666666666553        1333455666677777777777777777766654        344566


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010446          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (510)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (510)
                      ++..+|.++...|++++|+..|++++.+        +|....++.++|.++...|++++|+..+++++..       .|+
T Consensus       171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~  235 (388)
T 1w3b_A          171 AWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-------SPN  235 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-------CTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CcC
Confidence            6677777777777777777777777664        2344456677777777777777777777777665       233


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (510)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (510)
                      +   ..++.++|.++...|++++|+..+++++.+        .|....++..+|.++...|++++|+..|++++++    
T Consensus       236 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  300 (388)
T 1w3b_A          236 H---AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL----  300 (388)
T ss_dssp             C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH----
T ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence            3   335567788888888888888888777763        3444566777888888888888888888888774    


Q ss_pred             hCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                          .|....++..+|.++...|++++|+.++++++++
T Consensus       301 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  334 (388)
T 1w3b_A          301 ----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             ----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                3444566778888888888888888888887763

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.97  E-value=6.5e-29  Score=237.36  Aligned_cols=315  Identities=17%  Similarity=0.198  Sum_probs=276.0

Q ss_pred             hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC
Q 010446          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (510)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (510)
                      ......+..+|.++...|++++|+..+++++...   +.+.+....++..+|.++...|++++|+.++++++.+....  
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   80 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--   80 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--
Confidence            3446678899999999999999999999999874   33444457789999999999999999999999999998775  


Q ss_pred             CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC----------------
Q 010446          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------------  302 (510)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------  302 (510)
                      .+.+..+.++..+|.++...|++++|+.++++++++.....  +.+....++..+|.+|...|+                
T Consensus        81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  158 (406)
T 3sf4_A           81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE  158 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred             cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence            45567789999999999999999999999999999988764  345567789999999999999                


Q ss_pred             ----hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 010446          303 ----AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  378 (510)
Q Consensus       303 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  378 (510)
                          +++|+.++++++.+.+..  .+.+....++.++|.++...|++++|+.++++++.+....    +++.....++.+
T Consensus       159 a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~  232 (406)
T 3sf4_A          159 VRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERRAYSN  232 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc----CCcHHHHHHHHH
Confidence                999999999999998775  3456788899999999999999999999999999998873    556667778999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHH
Q 010446          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  458 (510)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  458 (510)
                      +|.++...|++++|+.++++++.+....  .+.+....++..+|.+|...|++++|+.++++++.+....  .+.+....
T Consensus       233 la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~  308 (406)
T 3sf4_A          233 LGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGR  308 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHH
Confidence            9999999999999999999999988765  2445567889999999999999999999999999987764  34566678


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446          459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (510)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  490 (510)
                      ++..+|.+|...|++++|..++++++++..+.
T Consensus       309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  340 (406)
T 3sf4_A          309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREV  340 (406)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999998775

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.97  E-value=3.9e-28  Score=225.50  Aligned_cols=311  Identities=17%  Similarity=0.205  Sum_probs=269.1

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (510)
                      ...+...|..+...|++++|+..+++++...   +.+......++..+|.++...|++++|+.++++++.+....  .+.
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~   79 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ   79 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--ccc
Confidence            4567788999999999999999999999874   33444456788999999999999999999999999998775  345


Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC-------------------
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-------------------  302 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------  302 (510)
                      +....++..+|.++...|++++|+.++++++++.+...  +.+....++..+|.++...|+                   
T Consensus        80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~  157 (338)
T 3ro2_A           80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN  157 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence            67788999999999999999999999999999987753  445567789999999999999                   


Q ss_pred             -hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHH
Q 010446          303 -AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE  381 (510)
Q Consensus       303 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~  381 (510)
                       +++|+.++++++.+.+..  .+.+....++.++|.++...|++++|+.++++++.+....    +++.....++..+|.
T Consensus       158 ~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~  231 (338)
T 3ro2_A          158 ALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERRAYSNLGN  231 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHH
Confidence             999999999999988776  2456678899999999999999999999999999998763    455666778899999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHH
Q 010446          382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (510)
Q Consensus       382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (510)
                      ++...|++++|+.++++++.+....  .+.+....++..+|.+|...|++++|+.++++++.+....  .+.+....++.
T Consensus       232 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~  307 (338)
T 3ro2_A          232 AYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACW  307 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHH
Confidence            9999999999999999999988765  2455667889999999999999999999999999988765  33556677889


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          462 HLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       462 ~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      .+|.+|...|++++|..++++++++.++
T Consensus       308 ~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          308 SLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=8.1e-28  Score=225.63  Aligned_cols=312  Identities=14%  Similarity=0.064  Sum_probs=260.7

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ...++..|..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++...     
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-----   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence            345788999999999999999999999987          77778899999999999999999999999998774     


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH------------HHHHhhcCCHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM------------AKVLGSIGRAKKAV  265 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~  265 (510)
                        |....++..+|.++...|++++|+..++++++..     +.......++..+            |.++...|++++|+
T Consensus        68 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           68 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence              3334568999999999999999999999998752     1000333344444            89999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCH
Q 010446          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (510)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (510)
                      .+++++++.        .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++
T Consensus       141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~  204 (359)
T 3ieg_A          141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDH  204 (359)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCH
Confidence            999999987        4556788999999999999999999999999874        344557889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHH---------HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh-hHH
Q 010446          346 EEAVELYKKALRVIKDSNYMSLDDSIMENM---------RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP-SFV  415 (510)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~  415 (510)
                      ++|...++++++.       .++.......         ...+|.++...|++++|+..+++++...     +..+ ...
T Consensus       205 ~~A~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~  272 (359)
T 3ieg_A          205 ELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTV  272 (359)
T ss_dssp             HHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHH
T ss_pred             HHHHHHHHHHHhh-------CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHH
Confidence            9999999999987       3444443322         2355899999999999999999998863     2222 233


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ..+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|..+|++++++.
T Consensus       273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          273 RSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            56778999999999999999999999985        45556788999999999999999999999999753

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.97  E-value=1.1e-27  Score=229.35  Aligned_cols=312  Identities=16%  Similarity=0.176  Sum_probs=271.7

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhh
Q 010446          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (510)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (510)
                      .....++..+..+...|++++|+.+++++++.       .+.++ ..+.++..+|.++...|++++|+.++++++.+...
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  118 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA-------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS  118 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34555778999999999999999999999987       23232 34578999999999999999999999999998876


Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCC--------------
Q 010446          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR--------------  260 (510)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------  260 (510)
                      . .+.+....++..+|.+|...|++++|+.++++++++....  .+.+....++..+|.+|...|+              
T Consensus       119 ~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a  195 (411)
T 4a1s_A          119 M-NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV  195 (411)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred             c-cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence            4 4557788889999999999999999999999999998775  3456788899999999999999              


Q ss_pred             ---HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 010446          261 ---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  337 (510)
Q Consensus       261 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  337 (510)
                         +++|+.++++++++.....  +.+....++..+|.++...|++++|+.++++++++....  .+......++.++|.
T Consensus       196 ~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~  271 (411)
T 4a1s_A          196 KEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGN  271 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHH
Confidence               9999999999999887763  456677899999999999999999999999999998775  244556778999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010446          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (510)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (510)
                      ++...|++++|+.++++++.+....    .+......++..+|.++...|++++|+.++++++.+.....  +.+....+
T Consensus       272 ~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~  345 (411)
T 4a1s_A          272 SHIFLGQFEDAAEHYKRTLALAVEL----GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARA  345 (411)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChHHHHHH
Confidence            9999999999999999999998863    44556677889999999999999999999999999987762  45566788


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446          418 LLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (510)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (510)
                      +..+|.+|...|++++|..++++++++.++
T Consensus       346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          346 CWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999997544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.97  E-value=2.8e-27  Score=219.80  Aligned_cols=310  Identities=17%  Similarity=0.206  Sum_probs=267.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG-IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (510)
                      ...++..|..+...|++++|+.+++++++.       .+.. ...+.++..+|.++...|++++|+.++++++.+.... 
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-   76 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-   76 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-------CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-
Confidence            345777899999999999999999999987       2223 3346789999999999999999999999999887764 


Q ss_pred             CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCC----------------
Q 010446          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR----------------  260 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------  260 (510)
                      .+.+....++..+|.++...|++++|+.++++++++....  .+.+....++..+|.++...|+                
T Consensus        77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  154 (338)
T 3ro2_A           77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED  154 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHH
T ss_pred             cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhh
Confidence            4556778889999999999999999999999999998774  3445677899999999999999                


Q ss_pred             ----HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 010446          261 ----AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA  336 (510)
Q Consensus       261 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  336 (510)
                          +++|+.++++++.+.+...  +.+....++..+|.++...|++++|+.++++++++....  .+.+....++.++|
T Consensus       155 a~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~  230 (338)
T 3ro2_A          155 VRNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLG  230 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHH
Confidence                9999999999999887754  456677889999999999999999999999999998775  24455777899999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010446          337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT  416 (510)
Q Consensus       337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  416 (510)
                      .++...|++++|..++++++.+....    .++.....++..+|.++...|++++|+.++++++.+.....  +.+....
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~  304 (338)
T 3ro2_A          231 NAYIFLGEFETASEYYKKTLLLARQL----KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGR  304 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHH
Confidence            99999999999999999999998763    45666678889999999999999999999999999987763  3456677


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010446          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (510)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (510)
                      ++..+|.+|...|++++|..++++++++..+
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          305 ACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999997544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.97  E-value=4.6e-27  Score=222.55  Aligned_cols=354  Identities=12%  Similarity=0.073  Sum_probs=274.1

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHhhCChHHHH-----------H
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII--ALGYVYIGDLKFVQ-----------S  183 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~-----------~  183 (510)
                      .+...++........+++++|..+.+++.+....    ...+++.. .++.+  .......++++.+.           .
T Consensus        11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~   85 (383)
T 3ulq_A           11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQ----MEEDQDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD   85 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----SCCCHHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh----hccchHHH-HHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence            5566778888889999999999999998665332    11233222 22222  22223344444444           5


Q ss_pred             HHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHH
Q 010446          184 LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK  263 (510)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  263 (510)
                      .+++.......  .+.......++..|..+...|++++|+.++++++++....  ++.+..+.++..+|.+|...|++++
T Consensus        86 ~~~~i~~~~~~--~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~  161 (383)
T 3ulq_A           86 LLLEIDKKQAR--LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYF  161 (383)
T ss_dssp             HHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhcCCC--chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            55554332111  0001112345569999999999999999999999886553  4455688999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC
Q 010446          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (510)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (510)
                      |+.++++++++.++.. ...+..+.++.++|.+|...|++++|+.++++++++.++.  ++.+..+.++.++|.+|...|
T Consensus       162 A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g  238 (383)
T 3ulq_A          162 SMDYARQAYEIYKEHE-AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQS  238 (383)
T ss_dssp             HHHHHHHHHHHHHTCS-TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCC
Confidence            9999999999987753 1256678899999999999999999999999999998876  345668889999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010446          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (510)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (510)
                      ++++|+.++++++++.+..    .+.+....++.++|.++...|++++|+.++++++.+....   .++.....+..+|.
T Consensus       239 ~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~  311 (383)
T 3ulq_A          239 QYEDAIPYFKRAIAVFEES----NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKS  311 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHT----TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence            9999999999999998763    3335567889999999999999999999999999998776   34444455778999


Q ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (510)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  495 (510)
                      +|...|++    ..+++++.+.++.  ...+....++..+|.+|...|++++|..++++++++.+++.+.++
T Consensus       312 ~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~e~  377 (383)
T 3ulq_A          312 LYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS  377 (383)
T ss_dssp             HHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred             HHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhccch
Confidence            99999995    4455555555544  446777888999999999999999999999999999998877554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=3.1e-27  Score=229.08  Aligned_cols=313  Identities=15%  Similarity=0.075  Sum_probs=261.5

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (510)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (510)
                      .....++..+..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++...   
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---   90 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---   90 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence            34555788899999999999999999999987          67778999999999999999999999999998874   


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHH------------HHHHHHHHhhcCCHHH
Q 010446          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS------------LLGMAKVLGSIGRAKK  263 (510)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~~  263 (510)
                          |....++..+|.+|...|++++|+..|+++++..     ++.+....+            +..+|.++...|++++
T Consensus        91 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  161 (450)
T 2y4t_A           91 ----MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA  161 (450)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence                3335668999999999999999999999998642     222210122            4455888999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC
Q 010446          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (510)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (510)
                      |+.+++++++.        .|....++..+|.+|...|++++|+..++++++..        |....++..+|.++...|
T Consensus       162 A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          162 AIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKISTLYYQLG  225 (450)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC
Confidence            99999999986        45567889999999999999999999999999863        333578899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH---------HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-
Q 010446          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMR---------IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-  413 (510)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  413 (510)
                      ++++|+..+++++..       .++.......+         ..+|.++...|++++|+.+|++++.+.     +.++. 
T Consensus       226 ~~~~A~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~  293 (450)
T 2y4t_A          226 DHELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSIAEY  293 (450)
T ss_dssp             CHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CSSHHH
T ss_pred             CHHHHHHHHHHHHHh-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CcchHH
Confidence            999999999999976       34444433322         344999999999999999999998753     23332 


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      ....+..+|.++...|++++|+..+++++.+        .|....++..+|.++...|++++|..+|++++++
T Consensus       294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            2568889999999999999999999999985        4556688999999999999999999999999874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.96  E-value=3.8e-26  Score=226.61  Aligned_cols=207  Identities=13%  Similarity=0.146  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      .++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+..+++++..        .
T Consensus       277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~  340 (537)
T 3fp2_A          277 NSYIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------N  340 (537)
T ss_dssp             HHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------C
Confidence            34444555555555555555555555443        3445667777888888888888888888888774        2


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (510)
                      |....++..+|.++...|++++|+.+++++++.       .++.+   .++..+|.++...|++++|+..+++++.....
T Consensus       341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-------FPTLP---EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            233356778888888888888888888888876       23332   35678899999999999999999999987754


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHH
Q 010446          406 YKGKEHPSFVTHLLNLAASYSRS----------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  475 (510)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  475 (510)
                      ..  ........+..+|.++...          |++++|+.+|+++++.        +|....++..+|.+|...|++++
T Consensus       411 ~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~  480 (537)
T 3fp2_A          411 QE--KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDE  480 (537)
T ss_dssp             CS--SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             ch--hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHH
Confidence            32  2222334466788899998          9999999999999985        45556788999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 010446          476 AEKLVLEALYIRE  488 (510)
Q Consensus       476 A~~~~~~al~~~~  488 (510)
                      |..+|++++++..
T Consensus       481 A~~~~~~al~~~~  493 (537)
T 3fp2_A          481 AIELFEDSAILAR  493 (537)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999998753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.96  E-value=2.2e-27  Score=223.68  Aligned_cols=316  Identities=17%  Similarity=0.136  Sum_probs=245.2

Q ss_pred             HHHHcCChhHHHH-HHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHH
Q 010446          127 SMIMMGNKNDAID-LLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (510)
Q Consensus       127 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (510)
                      .+...|++++|+. .+++++..       .+..| .....+..+|.++...|++++|+..+++++...       |....
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~   99 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQF-------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHME   99 (368)
T ss_dssp             ------------CHHHHCCCCC-------CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhc-------CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHH
Confidence            4556789999998 88888754       22222 235678899999999999999999999998763       33455


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010446          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (510)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (510)
                      ++..+|.++...|++++|+..++++++..        |....++..+|.++...|++++|+..+++++....     +.+
T Consensus       100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~  166 (368)
T 1fch_A          100 AWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-----AYA  166 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTG
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcH
Confidence            68999999999999999999999999862        44567899999999999999999999999998621     111


Q ss_pred             chH-------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHH
Q 010446          285 DLV-------------LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL  351 (510)
Q Consensus       285 ~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  351 (510)
                      ...             ..+..++.++ ..|++++|+..+++++...     +..+ ...++..+|.++...|++++|+.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~l~~~~~~~g~~~~A~~~  239 (368)
T 1fch_A          167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-----PTSI-DPDVQCGLGVLFNLSGEYDKAVDC  239 (368)
T ss_dssp             GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-----TTSC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-----cCcc-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence            111             1112566666 8999999999999999862     2211 467888999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCH
Q 010446          352 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  431 (510)
Q Consensus       352 ~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  431 (510)
                      +++++..       .++.   ..++..+|.++...|++++|+..+++++.+        .|....++..+|.+|...|++
T Consensus       240 ~~~al~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~  301 (368)
T 1fch_A          240 FTAALSV-------RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAH  301 (368)
T ss_dssp             HHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHh-------CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCH
Confidence            9999987       2333   356789999999999999999999999886        345567899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhC---CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010446          432 VEAERLLRICLDIMTKTVG---PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (510)
Q Consensus       432 ~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  494 (510)
                      ++|+.+|++++.+.....+   ..++....++..+|.++...|++++|..+++++++...+.++-+
T Consensus       302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  367 (368)
T 1fch_A          302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLP  367 (368)
T ss_dssp             HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCCC
Confidence            9999999999997654321   12344578899999999999999999999999999998887643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=2.4e-25  Score=223.87  Aligned_cols=319  Identities=13%  Similarity=0.047  Sum_probs=254.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH-----------------------------------------------
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKE-----------------------------------------------  150 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~-----------------------------------------------  150 (510)
                      ...+...+..+...|++++|+..|+++++....                                               
T Consensus       200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  279 (597)
T 2xpi_A          200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL  279 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence            455778889999999999999999999764110                                               


Q ss_pred             --------------HHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhh
Q 010446          151 --------------QINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL  216 (510)
Q Consensus       151 --------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  216 (510)
                                    .+......+....++..+|.++...|++++|+..|++++...    +.   ...++..++.++...
T Consensus       280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~  352 (597)
T 2xpi_A          280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID----PY---NLDVYPLHLASLHES  352 (597)
T ss_dssp             CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---CCTTHHHHHHHHHHH
T ss_pred             HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC----cc---cHHHHHHHHHHHHHh
Confidence                          000001113455667777888888888888888888777543    11   122366777788888


Q ss_pred             hcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 010446          217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  296 (510)
Q Consensus       217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  296 (510)
                      |++++|...+++++..        .|....++..+|.+|...|++++|+.+|++++++        .|....++..+|.+
T Consensus       353 g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~  416 (597)
T 2xpi_A          353 GEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHS  416 (597)
T ss_dssp             TCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            8888888888877653        2344677888999999999999999999999986        45567789999999


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 010446          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (510)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (510)
                      |...|++++|+..|+++++.        .|....++..+|.+|...|++++|+.+|+++++.       .++.+   .++
T Consensus       417 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~---~~~  478 (597)
T 2xpi_A          417 FAIEGEHDQAISAYTTAARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-------FQYDP---LLL  478 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCCCH---HHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCh---HHH
Confidence            99999999999999999874        2334567888999999999999999999999887       33333   457


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (510)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (510)
                      ..+|.++...|++++|+.+|+++++.....  +..|. ...++..+|.+|...|++++|+..++++++.        .|.
T Consensus       479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~  548 (597)
T 2xpi_A          479 NELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STN  548 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCC
Confidence            899999999999999999999999886553  23444 3788999999999999999999999999985        345


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ...++..+|.+|...|++++|..+|++++++.
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  580 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLAIS  580 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            56788999999999999999999999999863

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.96  E-value=1.5e-25  Score=211.64  Aligned_cols=350  Identities=15%  Similarity=0.098  Sum_probs=264.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHhhCChHHHH---------HHH
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIAL--GYVYIGDLKFVQ---------SLL  185 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~---------~~~  185 (510)
                      ++..+++........+++++|..+++++......    -..+.. ...++.+-.  .....+++..+.         ..+
T Consensus        11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~~-~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l   85 (378)
T 3q15_A           11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQ----MEEDQD-LLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL   85 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGG----BCCCHH-HHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----hcccHH-HHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence            4455666666678999999999999987654222    112222 223333222  222234444443         555


Q ss_pred             HHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHH
Q 010446          186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV  265 (510)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  265 (510)
                      +........  .+.......++..|..+...|++++|+.+|++++++....  ++.+..+.++.++|.+|...|++++|+
T Consensus        86 ~~i~~~~~~--~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~  161 (378)
T 3q15_A           86 ETIETPQKK--LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSM  161 (378)
T ss_dssp             HHHHGGGHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhccCCC--CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            544332211  1112223356788999999999999999999999887654  345678899999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCH
Q 010446          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (510)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (510)
                      .++++++++.++..+ ..+..+.++.++|.+|...|++++|+.++++++++.+..  ++.+..+.++.++|.+|...|++
T Consensus       162 ~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~  238 (378)
T 3q15_A          162 YHILQALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDD  238 (378)
T ss_dssp             HHHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCH
Confidence            999999999876431 134568889999999999999999999999999998775  24456778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010446          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  425 (510)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  425 (510)
                      ++|+.++++++.+.+..     .++....++.++|.++...|++++|+.++++++.+..+.   ..+.....+..++.+|
T Consensus       239 ~~A~~~~~~al~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly  310 (378)
T 3q15_A          239 QMAVEHFQKAAKVSREK-----VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVY  310 (378)
T ss_dssp             HHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence            99999999999988763     233347788999999999999999999999999987654   2344445678899999


Q ss_pred             HhccC---HHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446          426 SRSKN---FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (510)
Q Consensus       426 ~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  495 (510)
                      ...|+   +.+|+.++++       .  ...+.....+..+|.+|...|++++|..+|++++++.+++.+.++
T Consensus       311 ~~~~~~~~~~~al~~~~~-------~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  374 (378)
T 3q15_A          311 KETVDERKIHDLLSYFEK-------K--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC  374 (378)
T ss_dssp             SSSCCHHHHHHHHHHHHH-------T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hCCCcHHHHHHHHHHHHh-------C--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccch
Confidence            99998   5555555543       2  345667778899999999999999999999999999998876544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=2.6e-26  Score=212.78  Aligned_cols=297  Identities=14%  Similarity=0.137  Sum_probs=247.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .++..+..++..|++++|+.++++++..          .|....++..++.++...|++++|+..+++++...       
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------   86 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEK----------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------   86 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------
Confidence            3667888999999999999999999987          66667788889999999999999999999998764       


Q ss_pred             hHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          200 PLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                      |....++..+|.++...| ++++|+.++++++..        .|....++..+|.++...|++++|+.+++++++.    
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----  154 (330)
T 3hym_B           87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----  154 (330)
T ss_dssp             TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence            233445889999999999 999999999999874        2444567899999999999999999999999987    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                          .|....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++..
T Consensus       155 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  222 (330)
T 3hym_B          155 ----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK  222 (330)
T ss_dssp             ----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence                3444567888999999999999999999999874        3445678899999999999999999999999998


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (510)
                      ...... ....+....++..+|.++...|++++|+.++++++.+.        |....++..+|.+|...|++++|+.++
T Consensus       223 ~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~  293 (330)
T 3hym_B          223 IKAIGN-EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYF  293 (330)
T ss_dssp             HTTTSC-SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhccc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence            765311 11112334577899999999999999999999999863        344578899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHH-hcCChH
Q 010446          439 RICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDK  474 (510)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~  474 (510)
                      ++++++        .|....++..++.++. ..|+.+
T Consensus       294 ~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          294 HTALGL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            999873        4556678899999884 556543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=8.4e-27  Score=219.43  Aligned_cols=296  Identities=16%  Similarity=0.083  Sum_probs=231.3

Q ss_pred             hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (510)
                      ..+..+..+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+..|++++++       
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------  128 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLEL-------  128 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            445668999999999999999999999998874       334566899999999999999999999999986       


Q ss_pred             CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc--chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA--DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                       .|....++..+|.+|...|++++|+.++++++++..........  .....+..+|.++...|++++|+.++++++...
T Consensus       129 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  207 (365)
T 4eqf_A          129 -QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN  207 (365)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred             -CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence             24457789999999999999999999999999974432211000  123345567999999999999999999999862


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (510)
                           +.. ....++.++|.++...|++++|+.+++++++.       .++.   ..++.++|.++...|++++|+.+|+
T Consensus       208 -----p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~  271 (365)
T 4eqf_A          208 -----GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-------RPED---YSLWNRLGATLANGDRSEEAVEAYT  271 (365)
T ss_dssp             -----CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                 221 04567889999999999999999999999987       2333   4577999999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh----hHHHHHHHHHHHHhcCCh
Q 010446          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS----ISFPMLHLGITLYHLNRD  473 (510)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~  473 (510)
                      +++.+        .|....++..+|.+|...|++++|+.+|++++++.....++.++.    ...++..++.++...|+.
T Consensus       272 ~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  343 (365)
T 4eqf_A          272 RALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP  343 (365)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred             HHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence            99986        355578899999999999999999999999999876544332221    357789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCC
Q 010446          474 KEAEKLVLEALYIREIAFGKD  494 (510)
Q Consensus       474 ~~A~~~~~~al~~~~~~~~~~  494 (510)
                      +.|.....+.++...+.++.+
T Consensus       344 ~~a~~~~~~~l~~~~~~~~~~  364 (365)
T 4eqf_A          344 ELFQAANLGDLDVLLRAFNLD  364 (365)
T ss_dssp             HHHHHHHTTCCGGGTTTTTCC
T ss_pred             HHHHHHHHhhHHHHHHhcCCC
Confidence            999999888877777666644

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.95  E-value=1.4e-24  Score=205.50  Aligned_cols=271  Identities=13%  Similarity=0.079  Sum_probs=228.6

Q ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh
Q 010446          163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI  242 (510)
Q Consensus       163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  242 (510)
                      ..++..|..+...|++++|+..+++++.+.... ++.+..+.+++.+|.+|...|++++|+.++++++++.... +...+
T Consensus       104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~  181 (383)
T 3ulq_A          104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchH
Confidence            345669999999999999999999999987664 4556678889999999999999999999999999998775 22256


Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ..+.++.++|.+|...|++++|+.++++++++.++..  +.+..+.++.++|.+|...|++++|+.++++++++.+... 
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-  258 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-  258 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-
Confidence            7789999999999999999999999999999988753  5667778999999999999999999999999999987752 


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                       +.+....++.++|.++...|++++|..++++++.+....    .++ .....+..+|.++...|++    ..+++++..
T Consensus       259 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~----~~~~~al~~  328 (383)
T 3ulq_A          259 -ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA----GDV-IYLSEFEFLKSLYLSGPDE----EAIQGFFDF  328 (383)
T ss_dssp             -CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCH-HHHHHHHHHHHHHTSSCCH----HHHHHHHHH
T ss_pred             -cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----CCH-HHHHHHHHHHHHHhCCCcH----HHHHHHHHH
Confidence             227778999999999999999999999999999998764    233 3333367899999999995    344455555


Q ss_pred             HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (510)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (510)
                      .++.  ...+....++..+|.+|...|++++|..++++++++.++...
T Consensus       329 ~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          329 LESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             HHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             HHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            4444  345677788999999999999999999999999998776544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.6e-25  Score=205.55  Aligned_cols=284  Identities=21%  Similarity=0.246  Sum_probs=234.4

Q ss_pred             cCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .+.++|....++..+|.++...|++++|+.++++++++.....+++.+....++..+|.++...|++++|+.++++++++
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            46778888999999999999999999999999999999988876678889999999999999999999999999999999


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010446          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  354 (510)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (510)
                      .++..+.+.+....++..+|.++...|++++|+.++++++++.+...+++++....++.++|.++...|++++|+.++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            98887777888899999999999999999999999999999998888888899999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh-CCCChh------HHHHHHHHHHHHHh
Q 010446          355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPS------FVTHLLNLAASYSR  427 (510)
Q Consensus       355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~------~~~~~~~la~~~~~  427 (510)
                      ++......  .+++++....++..+|.++...|++++|+.++++++.+..... +...+.      ....+..++..+..
T Consensus       179 a~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3nf1_A          179 ALEIYQTK--LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD  256 (311)
T ss_dssp             HHHHHHHT--SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred             HHHHHHHH--hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence            99998764  3456777788999999999999999999999999998765431 111111      22334444555556


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010446          428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (510)
Q Consensus       428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  488 (510)
                      .+.+.+|...++++..        .+|....++..+|.+|..+|++++|..+|++++++.+
T Consensus       257 ~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          257 GTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             -CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            6666677777776654        4688889999999999999999999999999999864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.2e-25  Score=219.91  Aligned_cols=320  Identities=15%  Similarity=0.112  Sum_probs=264.2

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (510)
                      ....++..|..+...|++++|+..|++++..          .| .+.++..+|.++...|++++|+..+++++...    
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----   69 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL----------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK----   69 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----
Confidence            4556888999999999999999999999987          44 37789999999999999999999999998764    


Q ss_pred             CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh-----------------------c----------------
Q 010446          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-----------------------Y----------------  237 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~----------------  237 (510)
                         |....++..+|.++...|++++|+..|++++......                       .                
T Consensus        70 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  146 (514)
T 2gw1_A           70 ---PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ  146 (514)
T ss_dssp             ---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred             ---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence               3344668999999999999999999999987642100                       0                


Q ss_pred             --------CC------------------------CChhHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHhc--C
Q 010446          238 --------GK------------------------TSILLVTSLLGMAKVLGS---IGRAKKAVEIYHRVITILELNR--G  280 (510)
Q Consensus       238 --------~~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~--~  280 (510)
                              .+                        ..+.....+..+|.++..   .|++++|+.+++++++..+...  .
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  226 (514)
T 2gw1_A          147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN  226 (514)
T ss_dssp             ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence                    00                        002226667788888776   8999999999999999654433  2


Q ss_pred             CCC----cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446          281 TES----ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (510)
Q Consensus       281 ~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (510)
                      ++.    +....++..+|.++...|++++|+..++++++.        .|. ..++..+|.++...|++++|+..+++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~  297 (514)
T 2gw1_A          227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL  297 (514)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred             ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            222    566788999999999999999999999999985        233 7889999999999999999999999998


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010446          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (510)
                      ..       .+...   .++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.
T Consensus       298 ~~-------~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~  359 (514)
T 2gw1_A          298 KL-------DSNNS---SVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCET  359 (514)
T ss_dssp             TT-------CTTCT---HHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred             hc-------CcCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            76       23332   35688999999999999999999999874        23345688899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      .+++++..        .|....++..+|.++...|++++|..++++++++...
T Consensus       360 ~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          360 LFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             HHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            99999985        3444567899999999999999999999999987654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=3.6e-26  Score=215.10  Aligned_cols=285  Identities=15%  Similarity=0.039  Sum_probs=225.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ++..|..+...|++++|+.+|++++..          .|..+.++..+|.++...|++++|+..+++++.+.       |
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p  130 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQ----------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------P  130 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------C
Confidence            667899999999999999999999988          77778999999999999999999999999998874       3


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI--LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                      ....++..+|.+|...|++++|+.++++++++..........  .....+..+|.++...|++++|+.+++++++.    
T Consensus       131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  206 (365)
T 4eqf_A          131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----  206 (365)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh----
Confidence            335568999999999999999999999999875432111000  12345566799999999999999999999987    


Q ss_pred             cCCCCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446          279 RGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (510)
Q Consensus       279 ~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (510)
                          .|.  ...++..+|.++...|++++|+.+++++++.        .|....++.++|.++...|++++|+.+|++++
T Consensus       207 ----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  274 (365)
T 4eqf_A          207 ----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRAL  274 (365)
T ss_dssp             ----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                333  5678999999999999999999999999986        34446789999999999999999999999999


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh----hHHHHHHHHHHHHHhccCHH
Q 010446          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP----SFVTHLLNLAASYSRSKNFV  432 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~  432 (510)
                      +.       .|+.   ..++.++|.++...|++++|+.+|++++.+.....++.++    ....++..++.++...|+.+
T Consensus       275 ~~-------~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  344 (365)
T 4eqf_A          275 EI-------QPGF---IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE  344 (365)
T ss_dssp             HH-------CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred             hc-------CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence            87       2333   4577899999999999999999999999988665433222    13568899999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010446          433 EAERLLRICLDIMTKT  448 (510)
Q Consensus       433 ~A~~~~~~al~~~~~~  448 (510)
                      .|....++.++...+.
T Consensus       345 ~a~~~~~~~l~~~~~~  360 (365)
T 4eqf_A          345 LFQAANLGDLDVLLRA  360 (365)
T ss_dssp             HHHHHHTTCCGGGTTT
T ss_pred             HHHHHHHhhHHHHHHh
Confidence            9998887766654433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.6e-25  Score=220.86  Aligned_cols=322  Identities=15%  Similarity=0.071  Sum_probs=262.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ...+...+..+...|++++|+..++++++.          .|....++..+|.++...|++++|+..|++++........
T Consensus        39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           39 PVFYSNLSACYVSVGDLKKVVEMSTKALEL----------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc----------ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            345778899999999999999999999987          7778899999999999999999999999988765420000


Q ss_pred             ------------------------------------------------------------------------CchHHHHH
Q 010446          198 ------------------------------------------------------------------------DEPLLDAI  205 (510)
Q Consensus       198 ------------------------------------------------------------------------~~~~~~~~  205 (510)
                                                                                              ..|.....
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (514)
T 2gw1_A          109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADK  188 (514)
T ss_dssp             GTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHH
Confidence                                                                                    00122555


Q ss_pred             HHHHHHHHHh---hhcHHHHHHHHHHHHHHHHHhc--CCCC----hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446          206 LLHMGSMYST---LENYEKSMLVYQRVINVLESRY--GKTS----ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (510)
Q Consensus       206 ~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (510)
                      +..+|.++..   .|++++|+..++++++..+...  .+++    +....++..+|.++...|++++|+.+++++++.  
T Consensus       189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--  266 (514)
T 2gw1_A          189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--  266 (514)
T ss_dssp             HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence            6778887776   8999999999999999654443  2232    567889999999999999999999999999987  


Q ss_pred             HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (510)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (510)
                            .|. ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++
T Consensus       267 ------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  331 (514)
T 2gw1_A          267 ------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK  331 (514)
T ss_dssp             ------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             ------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                  344 888999999999999999999999999874        33445678899999999999999999999998


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010446          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (510)
                      ..       .+...   .++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.
T Consensus       332 ~~-------~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~  393 (514)
T 2gw1_A          332 EL-------DPENI---FPYIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALK  393 (514)
T ss_dssp             HT-------CSSCS---HHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             Hh-------ChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            86       33332   366889999999999999999999998752        3334678899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh---cCChHHHHHHHHHHHHH
Q 010446          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYH---LNRDKEAEKLVLEALYI  486 (510)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~  486 (510)
                      ++++++......  +.......++..+|.++..   .|++++|..++++++++
T Consensus       394 ~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          394 QYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             HHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence            999999865331  1111223477888888888   89999999888888875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.95  E-value=6.7e-25  Score=220.62  Aligned_cols=316  Identities=13%  Similarity=0.129  Sum_probs=258.0

Q ss_pred             cCCCCCchHHhhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 010446           86 SGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAIL  165 (510)
Q Consensus        86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  165 (510)
                      ..+...+++..+..++..+...       ......+...+..+...|++++|+.+|+++++.          .|....++
T Consensus       280 ~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~  342 (597)
T 2xpi_A          280 NKTSHEDELRRAEDYLSSINGL-------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI----------DPYNLDVY  342 (597)
T ss_dssp             CTTTTHHHHHHHHHHHHTSTTG-------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCCTTH
T ss_pred             HHHcCcchHHHHHHHHHHhhcC-------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc----------CcccHHHH
Confidence            3444445555555555544422       123445777889999999999999999999976          55667788


Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010446          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (510)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (510)
                      ..++.++...|++++|...++++....       |....++..+|.+|...|++++|+.+|+++++.        .|...
T Consensus       343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~  407 (597)
T 2xpi_A          343 PLHLASLHESGEKNKLYLISNDLVDRH-------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFG  407 (597)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCH
Confidence            999999999999999999999988553       333455888999999999999999999999875        23446


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      .++..++.+|...|++++|+.+++++++.        .|....++..+|.+|...|++++|+.+|+++++.        .
T Consensus       408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~  471 (597)
T 2xpi_A          408 PAWIGFAHSFAIEGEHDQAISAYTTAARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------F  471 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            78899999999999999999999999875        3445678899999999999999999999999875        2


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (510)
                      |....++..+|.++...|++++|+.+|+++++...+.   +.++.....++..+|.++...|++++|+..++++++..  
T Consensus       472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--  546 (597)
T 2xpi_A          472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT---QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--  546 (597)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc---ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence            2334678999999999999999999999999987653   33444346688999999999999999999999998762  


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH
Q 010446          406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  468 (510)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  468 (510)
                            |....++..+|.+|...|++++|..+|++++++        +|....++..++.+|.
T Consensus       547 ------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          547 ------TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--------SPNEIMASDLLKRALE  595 (597)
T ss_dssp             ------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTC
T ss_pred             ------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHh
Confidence                  445678999999999999999999999999985        4555667788887664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.95  E-value=8.1e-25  Score=213.39  Aligned_cols=335  Identities=14%  Similarity=0.070  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC-Cc
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD-DE  199 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~  199 (510)
                      +...|..+...|++++|+++|++++++.+.... ....+..+.++.++|.+|..+|++++|+.++++++.+...... ..
T Consensus        54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~  132 (472)
T 4g1t_A           54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR  132 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence            445788899999999999999999999776532 2235667788999999999999999999999999998766432 23


Q ss_pred             hHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYST--LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV---LGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~  274 (510)
                      +..+.++..+|..+..  .+++++|+.+|++++++.     ++++   .++..++.+   +...+++++|++.+++++++
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----p~~~---~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l  204 (472)
T 4g1t_A          133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKNP---EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL  204 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----TTCH---HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence            4455667778776655  468999999999999862     3333   344444444   33456667777777777665


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHH
Q 010446          275 LELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  350 (510)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  350 (510)
                              .|....++..+|..+..    .|++++|..++++++..        +|....++.++|.+|...|++++|+.
T Consensus       205 --------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~  268 (472)
T 4g1t_A          205 --------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIE  268 (472)
T ss_dssp             --------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             --------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHcCchHHHHH
Confidence                    23333344444433322    23445555555555443        22233444555555555555555555


Q ss_pred             HHHHHHHHH----------------------------------------------HhhccCCCCChHHHHHHHHHHHHHH
Q 010446          351 LYKKALRVI----------------------------------------------KDSNYMSLDDSIMENMRIDLAELLH  384 (510)
Q Consensus       351 ~~~~al~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~la~~~~  384 (510)
                      .++++++..                                              .+.....+..   ..++..+|.++.
T Consensus       269 ~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~lg~~~~  345 (472)
T 4g1t_A          269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL---FRVCSILASLHA  345 (472)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT---CCCHHHHHHHHH
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch---hhhhhhHHHHHH
Confidence            555554431                                              1000001111   123467899999


Q ss_pred             HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHH-----------------
Q 010446          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-YSRSKNFVEAERLLRICLDIMT-----------------  446 (510)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~-----------------  446 (510)
                      ..|++++|+.+|++++.+.     +.+.....++..+|.+ +...|++++|+.+|++++.+..                 
T Consensus       346 ~~~~~~~A~~~~~kaL~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~  420 (472)
T 4g1t_A          346 LADQYEEAEYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK  420 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence            9999999999999998752     2222333455666654 4578999999999999987521                 


Q ss_pred             HHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      +.+ ..+|....++..+|.+|..+|++++|+++|++|+++...
T Consensus       421 ~~l-~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~  462 (472)
T 4g1t_A          421 MRL-SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL  462 (472)
T ss_dssp             HHH-HHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred             HHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            111 124566778999999999999999999999999997644

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.95  E-value=3.1e-24  Score=201.11  Aligned_cols=295  Identities=13%  Similarity=0.091  Sum_probs=241.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ..+...+..+...|++++|+..++++++.          .|....++..+|.++...|++++|+..+++++...    +.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~  103 (359)
T 3ieg_A           38 IAYYRRATVFLAMGKSKAALPDLTKVIAL----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----PS  103 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC----CC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh----------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC----Cc
Confidence            34778899999999999999999999988          67777899999999999999999999999998764    10


Q ss_pred             chHHHHHHHHH------------HHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHH
Q 010446          199 EPLLDAILLHM------------GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE  266 (510)
Q Consensus       199 ~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  266 (510)
                      ......++..+            |.++...|++++|+..++++++..        |....++..+|.++...|++++|+.
T Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~  175 (359)
T 3ieg_A          104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--------VWDAELRELRAECFIKEGEPRKAIS  175 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHCCCHHHHHH
Confidence            00333334444            799999999999999999998762        3446788999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH---------HHHHHH
Q 010446          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA---------MCSLAH  337 (510)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~~~la~  337 (510)
                      .++++++.        .|....++..+|.++...|++++|+..++++++.     .++++.....         ...+|.
T Consensus       176 ~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~  242 (359)
T 3ieg_A          176 DLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAE  242 (359)
T ss_dssp             HHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999875        4566789999999999999999999999999975     2344443222         335588


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010446          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT  416 (510)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  416 (510)
                      ++...|++++|+..+++++..       .++. .....++..+|.++...|++++|+..+++++..        .|....
T Consensus       243 ~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~  307 (359)
T 3ieg_A          243 ELIRDGRYTDATSKYESVMKT-------EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVN  307 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-------CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccHH
Confidence            999999999999999999987       2333 334456788999999999999999999999886        345567


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcC
Q 010446          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  471 (510)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  471 (510)
                      ++..+|.++...|++++|+..|++++++        .|....+...++.++...+
T Consensus       308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHH
Confidence            8999999999999999999999999984        3444556666666655443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=1.3e-24  Score=210.65  Aligned_cols=310  Identities=14%  Similarity=0.092  Sum_probs=250.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ...+...+..+...|++++|+..++++++.          .|..+.++..+|.+|...|++++|+..+++++...    +
T Consensus        60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~  125 (450)
T 2y4t_A           60 YIAYYRRATVFLAMGKSKAALPDLTKVIQL----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----P  125 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----C
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C
Confidence            344777889999999999999999999988          67778999999999999999999999999988753    2


Q ss_pred             Cch---HHH---------HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHH
Q 010446          198 DEP---LLD---------AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV  265 (510)
Q Consensus       198 ~~~---~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  265 (510)
                      ..+   ...         ..+..+|.++...|++++|+..|+++++..        |....++..+|.+|...|++++|+
T Consensus       126 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~  197 (450)
T 2y4t_A          126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--------VWDAELRELRAECFIKEGEPRKAI  197 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHCCCHHHHH
Confidence            222   111         113455888999999999999999998752        444678899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH---------HHHH
Q 010446          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM---------CSLA  336 (510)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~~la  336 (510)
                      .+++++++.        .|....++..+|.+|...|++++|+..+++++..     .++++.....+         ..+|
T Consensus       198 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~  264 (450)
T 2y4t_A          198 SDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESA  264 (450)
T ss_dssp             HHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999987        3455788999999999999999999999999875     23444332222         4449


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010446          337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (510)
Q Consensus       337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (510)
                      .++...|++++|+.+|++++..       .+++ ......+..+|.++...|++++|+.++++++.+        .|...
T Consensus       265 ~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~  329 (450)
T 2y4t_A          265 EELIRDGRYTDATSKYESVMKT-------EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNV  329 (450)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH-------CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccH
Confidence            9999999999999999999986       3333 333567899999999999999999999999875        34556


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHH------------HHHhcC-----ChHHHHH
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI------------TLYHLN-----RDKEAEK  478 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~------------~~~~~g-----~~~~A~~  478 (510)
                      .++..+|.++...|++++|+..|++++++        .|....++..++.            .|...|     +.+++.+
T Consensus       330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~  401 (450)
T 2y4t_A          330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK  401 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence            88999999999999999999999999984        3444556677773            344555     5567788


Q ss_pred             HHHH-HHH
Q 010446          479 LVLE-ALY  485 (510)
Q Consensus       479 ~~~~-al~  485 (510)
                      .|++ ++.
T Consensus       402 ~y~~~~l~  409 (450)
T 2y4t_A          402 AYRKLALQ  409 (450)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            7776 444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.95  E-value=9.4e-25  Score=200.43  Aligned_cols=283  Identities=21%  Similarity=0.274  Sum_probs=232.4

Q ss_pred             CCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC-CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK-DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      +.+.|..+.++..+|.++...|++++|+.++++++.+..... .+.+....++..+|.++...|++++|+.++++++...
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            556888999999999999999999999999999998876542 3567788889999999999999999999999999999


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (510)
Q Consensus       234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (510)
                      ....+.+++....++..+|.++...|++++|+.++++++++.+...+.+++....++..+|.++...|++++|+.+++++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88877788889999999999999999999999999999999988877778888999999999999999999999999999


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC--CCC---ChHHHHHHHHHHHHHHHcCC
Q 010446          314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM--SLD---DSIMENMRIDLAELLHIVGR  388 (510)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~---~~~~~~~~~~la~~~~~~g~  388 (510)
                      +.+.+...+++++....++..+|.++...|++++|+.+++++++........  .+.   .......+..++..+...+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS  259 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence            9999888777889999999999999999999999999999999886543110  011   11122333445555566677


Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446          389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (510)
                      +.+|...++++..        .++....++..+|.+|...|++++|+.+|++++++.
T Consensus       260 ~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          260 FGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             SCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            7777777776654        467788999999999999999999999999999874

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.6e-25  Score=207.34  Aligned_cols=279  Identities=13%  Similarity=0.118  Sum_probs=234.1

Q ss_pred             hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC
Q 010446          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (510)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (510)
                      +..+..+..+|..++..|++++|+..+++++...       |....++..++.++...|++++|+..++++++.      
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------   85 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDL------   85 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh------
Confidence            3445577889999999999999999999988764       222334677888999999999999999999885      


Q ss_pred             CCChhHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          239 KTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                        .|....++..+|.++...| ++++|+.+++++++.        .|....++..+|.++...|++++|+..++++++..
T Consensus        86 --~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  155 (330)
T 3hym_B           86 --YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM  155 (330)
T ss_dssp             --CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             --CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence              2344567899999999999 999999999999876        45567889999999999999999999999999863


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (510)
                              |....++..+|.++...|++++|+.++++++..       .++.   ..++..+|.++...|++++|+.+++
T Consensus       156 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~  217 (330)
T 3hym_B          156 --------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-------APED---PFVMHEVGVVAFQNGEWKTAEKWFL  217 (330)
T ss_dssp             --------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcccHHHHHHHHH
Confidence                    223356777999999999999999999999876       2333   3567899999999999999999999


Q ss_pred             HHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHH
Q 010446          398 ECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  476 (510)
Q Consensus       398 ~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  476 (510)
                      +++........... +....++..+|.+|...|++++|+.++++++++        .|....++..+|.++...|++++|
T Consensus       218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A  289 (330)
T 3hym_B          218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENA  289 (330)
T ss_dssp             HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHH
Confidence            99998765533222 445678899999999999999999999999985        345567889999999999999999


Q ss_pred             HHHHHHHHHH
Q 010446          477 EKLVLEALYI  486 (510)
Q Consensus       477 ~~~~~~al~~  486 (510)
                      ..++++++++
T Consensus       290 ~~~~~~al~~  299 (330)
T 3hym_B          290 VDYFHTALGL  299 (330)
T ss_dssp             HHHHHTTTTT
T ss_pred             HHHHHHHHcc
Confidence            9999999874

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.94  E-value=1.4e-23  Score=198.22  Aligned_cols=268  Identities=12%  Similarity=0.107  Sum_probs=224.7

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (510)
                      ...++..|..+...|++++|+..+++++.+.... ++.+..+.+++.+|.+|...|++++|+.++++++++..... ...
T Consensus       101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~  178 (378)
T 3q15_A          101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYS  178 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TCH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-Cch
Confidence            3467788999999999999999999999988764 45577888999999999999999999999999999987641 113


Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      +..+.++.++|.+|...|++++|+.++++++++.++..  +.+..+.++.++|.+|...|++++|+.++++++++.+.. 
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-  255 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK-  255 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-
Confidence            46788999999999999999999999999999987753  445667889999999999999999999999999998876 


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEE  398 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~  398 (510)
                        .+|....++.++|.++...|++++|..++++++++....    .++. ....+..++.++...|+   +.+|+.++++
T Consensus       256 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~-~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          256 --VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR----SHKF-YKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             --CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT----CCSC-HHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             --CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----CCHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence              456668899999999999999999999999999986542    2232 33355788889888888   5555555544


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (510)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (510)
                             .  ...+.....+..+|.+|...|++++|..+|++++++.++...
T Consensus       329 -------~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~  371 (378)
T 3q15_A          329 -------K--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK  371 (378)
T ss_dssp             -------T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------C--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence                   2  245667778889999999999999999999999998776543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.94  E-value=4.9e-25  Score=207.58  Aligned_cols=281  Identities=16%  Similarity=0.095  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ++..+..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++...       |
T Consensus        67 ~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~  129 (368)
T 1fch_A           67 PFEEGLRRLQEGDLPNAVLLFEAAVQQ----------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------P  129 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------C
Confidence            667899999999999999999999987          67778899999999999999999999999998874       3


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH-------------HHHHHHHHHHHhhcCCHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL-------------VTSLLGMAKVLGSIGRAKKAVEI  267 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~g~~~~A~~~  267 (510)
                      ....++..+|.++...|++++|+..+++++....     +.+..             ...+..++.++ ..|++++|+.+
T Consensus       130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~  203 (368)
T 1fch_A          130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTP-----AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKEL  203 (368)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTGGGCC---------------CTTHHHH-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHH
Confidence            3345689999999999999999999999987532     22211             11122466666 89999999999


Q ss_pred             HHHHHHHHHHhcCCCCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCH
Q 010446          268 YHRVITILELNRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (510)
Q Consensus       268 ~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (510)
                      ++++++.        .|.  ...++..+|.++...|++++|+.++++++.+        .|....++.++|.++...|++
T Consensus       204 ~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~  267 (368)
T 1fch_A          204 FLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQS  267 (368)
T ss_dssp             HHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHcCCH
Confidence            9999987        333  5788999999999999999999999999986        244457889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCChhHHHHHHHHH
Q 010446          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLA  422 (510)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la  422 (510)
                      ++|+.++++++..       .++.   ..++..+|.++...|++++|+.++++++.+.....+   ..++....++..+|
T Consensus       268 ~~A~~~~~~al~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~  337 (368)
T 1fch_A          268 EEAVAAYRRALEL-------QPGY---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR  337 (368)
T ss_dssp             HHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-------CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence            9999999999987       2333   356789999999999999999999999998754321   12334478899999


Q ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446          423 ASYSRSKNFVEAERLLRICLDIMTKTVG  450 (510)
Q Consensus       423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (510)
                      .+|...|++++|...++++++...+.++
T Consensus       338 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~  365 (368)
T 1fch_A          338 LALSMLGQSDAYGAADARDLSTLLTMFG  365 (368)
T ss_dssp             HHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence            9999999999999999999998776654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.9e-24  Score=210.76  Aligned_cols=310  Identities=11%  Similarity=-0.007  Sum_probs=232.6

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC--CCchHHHHHHHH
Q 010446          131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK--DDEPLLDAILLH  208 (510)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~  208 (510)
                      .++.+.++..+++.+....+    ..+.+..+..++.+|.++...|++++|+..|++++++.....  ..++....++.+
T Consensus        24 l~~~~~~l~~~e~~~~~~~~----~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~n   99 (472)
T 4g1t_A           24 LMEGENSLDDFEDKVFYRTE----FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGN   99 (472)
T ss_dssp             TTTTCCCHHHHHHHHHHHTT----SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Confidence            34555566656555443211    223444567889999999999999999999999998865532  234566777999


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 010446          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI--GRAKKAVEIYHRVITILELNRGTESADL  286 (510)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (510)
                      +|.+|..+|++++|+.++++++++.+...+..++..+.++.++|.++...  +++++|+.+|++++++        .|..
T Consensus       100 la~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~  171 (472)
T 4g1t_A          100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKN  171 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTC
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCC
Confidence            99999999999999999999999998876666667778888888777665  5799999999999998        3455


Q ss_pred             HHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHH
Q 010446          287 VLPLFSLGSLF---IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC----ANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       287 ~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~  359 (510)
                      ..++..+|.++   ...++.++|+..+++++++        +|....++.++|..+.    ..|++++|..++++++.. 
T Consensus       172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-  242 (472)
T 4g1t_A          172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-  242 (472)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-
Confidence            56666666664   4568889999999999986        2333445566665554    456788999999999887 


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc----------
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK----------  429 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------  429 (510)
                            .++.   ..++.++|.+|...|++++|+..++++++.        +|....++..+|.+|...+          
T Consensus       243 ------~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~  305 (472)
T 4g1t_A          243 ------APGV---TDVLRSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENG  305 (472)
T ss_dssp             ------CSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ------CccH---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                  3333   346688999999999999999999999875        4566778888998886542          


Q ss_pred             ---------CHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          430 ---------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       430 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                               .+++|+..+++++.+        +|....++..+|.++...|++++|+.+|++++++
T Consensus       306 ~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          306 MYGKRKLLELIGHAVAHLKKADEA--------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHH--------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhc--------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence                     345566666666553        4556677899999999999999999999999864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.94  E-value=1.7e-24  Score=195.75  Aligned_cols=271  Identities=20%  Similarity=0.195  Sum_probs=227.8

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 010446          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (510)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (510)
                      ....|++++|+.+|++++++..+..+.+++....++..+|.++...|++++|+.++++++++.++..+++++....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            35679999999999999999999888888999999999999999999999999999999999998877788999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 010446          293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM  372 (510)
Q Consensus       293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  372 (510)
                      +|.++...|++++|+.++++++.+.++..+++++....++.++|.++...|++++|+.++++++.+....  .+++++..
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~  168 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR--LGPDDPNV  168 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--SCTTCHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCHHH
Confidence            9999999999999999999999999998888889999999999999999999999999999999997764  45667778


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Q 010446          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (510)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (510)
                      ..++.++|.++...|++++|+.++++++.+..... +...+.....+..++..+...+....+.. +.++....+ ..+.
T Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~  246 (283)
T 3edt_B          169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYK-ACKV  246 (283)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHH-hcCC
Confidence            88999999999999999999999999999865542 23344555567777777776666555544 444444333 3345


Q ss_pred             CChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      .++....++..+|.+|..+|++++|..++++++++.
T Consensus       247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            678889999999999999999999999999998753

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.94  E-value=1.5e-24  Score=200.65  Aligned_cols=287  Identities=14%  Similarity=0.090  Sum_probs=232.7

Q ss_pred             hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (510)
                      .....+..+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+.+++++++..      
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------   85 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------   85 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Confidence            455678899999999999999999999998764       3344568899999999999999999999999862      


Q ss_pred             CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HH-HHHHcCChH
Q 010446          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL--------------GS-LFIKEGKAV  304 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~  304 (510)
                        |....++..+|.++...|++++|+..++++++..        |.....+..+              +. ++...|+++
T Consensus        86 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (327)
T 3cv0_A           86 --PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR  155 (327)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--------TTTTTC--------------------CCTTSHHHHH
T ss_pred             --cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH
Confidence              3446788999999999999999999999998762        2223333333              54 588899999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH
Q 010446          305 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH  384 (510)
Q Consensus       305 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~  384 (510)
                      +|+.+++++++.        .|....++..+|.++...|++++|+.+++++++.       .++.   ..++..+|.++.
T Consensus       156 ~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~l~~~~~  217 (327)
T 3cv0_A          156 ECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-------RPDD---AQLWNKLGATLA  217 (327)
T ss_dssp             HHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCc---HHHHHHHHHHHH
Confidence            999999999875        2334578899999999999999999999999987       2333   346789999999


Q ss_pred             HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCC----ChhhHHHH
Q 010446          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD----DQSISFPM  460 (510)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~  460 (510)
                      ..|++++|+.++++++..        .|....++..+|.+|...|++++|+.++++++.+.....+..    ......++
T Consensus       218 ~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  289 (327)
T 3cv0_A          218 NGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW  289 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence            999999999999999875        244567888999999999999999999999998643211111    11156788


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446          461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (510)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  495 (510)
                      ..+|.++...|++++|...++++++.....++-++
T Consensus       290 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  324 (327)
T 3cv0_A          290 DFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQS  324 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTSSC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhHHH
Confidence            99999999999999999999999999988776554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.93  E-value=5.7e-24  Score=192.22  Aligned_cols=270  Identities=20%  Similarity=0.224  Sum_probs=223.8

Q ss_pred             HHhhCChHHHHHHHHHHHHhhhhc-CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010446          172 YVYIGDLKFVQSLLDMMSGIVDSL-KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (510)
Q Consensus       172 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (510)
                      ....|++++|+.++++++.+.... +.++|....++..+|.++...|++++|+.++++++++.....+++++....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            346899999999999999987664 3456888899999999999999999999999999999998888888999999999


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (510)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (510)
                      +|.++...|++++|+.++++++++.++..+++++....++.++|.++...|++++|+.++++++++.+...+++++....
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            99999999999999999999999999888888889999999999999999999999999999999999888888899999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (510)
                      ++.++|.++...|++++|+.++++++....... .+...+.....+..++..+...+....+.. +.++....... +..
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~  247 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKE-FGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKAC-KVD  247 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-SSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CC-CCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhc-CCC
Confidence            999999999999999999999999999876542 112222223345666777666666555544 44444443333 456


Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      ++....++..+|.+|...|++++|..++++++++
T Consensus       248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7888899999999999999999999999999874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.93  E-value=3.9e-24  Score=197.77  Aligned_cols=279  Identities=11%  Similarity=0.023  Sum_probs=229.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ++..+..+...|++++|+.+++++++.          .|..+.++..+|.++...|++++|+..+++++...       |
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~   86 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQA----------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------P   86 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------c
Confidence            567889999999999999999999987          67778899999999999999999999999998874       3


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--------------HH-HHhhcCCHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM--------------AK-VLGSIGRAKKAV  265 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~  265 (510)
                      ....++..+|.++...|++++|+..+++++....     ...   ..+..+              +. ++...|++++|+
T Consensus        87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A           87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-----QYE---QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTT---TC--------------------CCTTSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccH---HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence            3345688999999999999999999999987532     111   122222              44 588899999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCH
Q 010446          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (510)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (510)
                      .+++++++.        .|....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++
T Consensus       159 ~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~  222 (327)
T 3cv0_A          159 TLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRP  222 (327)
T ss_dssp             HHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCH
Confidence            999999987        3456788999999999999999999999999985        244457789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC----hhHHHHHHHH
Q 010446          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH----PSFVTHLLNL  421 (510)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~l  421 (510)
                      ++|+.+++++++.       .++.   ..++..+|.++...|++++|+.++++++.......+...    .....++..+
T Consensus       223 ~~A~~~~~~a~~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l  292 (327)
T 3cv0_A          223 QEALDAYNRALDI-------NPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFF  292 (327)
T ss_dssp             HHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-------CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHH
Confidence            9999999999987       2333   346788999999999999999999999987643211111    1157789999


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446          422 AASYSRSKNFVEAERLLRICLDIMTKTVG  450 (510)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (510)
                      |.++...|++++|...++++++...+..+
T Consensus       293 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          293 RMLLNVMNRPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             HHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence            99999999999999999999988776544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.93  E-value=1.2e-22  Score=191.67  Aligned_cols=312  Identities=12%  Similarity=0.051  Sum_probs=248.7

Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (510)
                      ...++..+|.++...|++++|...+++++....  ..+......++..+|.++...|++++|..++++++.+....  .+
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~   88 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DV   88 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--Cc
Confidence            456778889999999999999999999988652  12223355678899999999999999999999999988764  23


Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      ......++.++|.++...|++++|+.++++++++.+...+..++....++.++|.++...|++++|..++++++.+....
T Consensus        89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A           89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            33556778999999999999999999999999998877655456778889999999999999999999999999886543


Q ss_pred             cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh-HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEEC  399 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (510)
                         .++....++.++|.++...|++++|..++++++.+....    ..+. ........++.++...|++++|..+++++
T Consensus       169 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  241 (373)
T 1hz4_A          169 ---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG----KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  241 (373)
T ss_dssp             ---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence               223355788899999999999999999999999886542    1121 12222224566688999999999999987


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (510)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (510)
                      +...    ..........+..+|.++...|++++|...+++++......  +..+....++..+|.++...|++++|...
T Consensus       242 ~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~  315 (373)
T 1hz4_A          242 AKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRV  315 (373)
T ss_dssp             CCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCC----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6532    11112223456789999999999999999999999987663  22334556888999999999999999999


Q ss_pred             HHHHHHHHHH
Q 010446          480 VLEALYIREI  489 (510)
Q Consensus       480 ~~~al~~~~~  489 (510)
                      +++++.+...
T Consensus       316 l~~al~~~~~  325 (373)
T 1hz4_A          316 LLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9999998874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.93  E-value=6.4e-22  Score=186.56  Aligned_cols=310  Identities=12%  Similarity=0.048  Sum_probs=244.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      .......+..+...|++++|+.++++++...     ...+......++..+|.++...|++++|...+++++.+....+ 
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-   87 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEEL-----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-   87 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-
Confidence            3445667788899999999999999998762     1111223556788999999999999999999999999887643 


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      +......++..+|.++...|++++|+.++++++.......+..++....++.++|.++...|++++|..++++++++...
T Consensus        88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A           88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            33445666889999999999999999999999999887655445677888999999999999999999999999988654


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH--HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010446          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR--VGMAMCSLAHAKCANGNAEEAVELYKKA  355 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (510)
                      ..   ++....++..+|.++...|++++|..++++++.+....   ..+.  ........+.++...|++++|..+++++
T Consensus       168 ~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  241 (373)
T 1hz4_A          168 YQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  241 (373)
T ss_dssp             SC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            32   23356788899999999999999999999999875432   2222  1122224556688999999999999988


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010446          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (510)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (510)
                      +...      ..........+..+|.++...|++++|...+++++.......  ..+....++..+|.++...|++++|.
T Consensus       242 ~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~  313 (373)
T 1hz4_A          242 AKPE------FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLLLLNQLYWQAGRKSDAQ  313 (373)
T ss_dssp             CCCC------CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCC------CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHhCCHHHHH
Confidence            7531      111122223567899999999999999999999999877642  23344568889999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 010446          436 RLLRICLDIMTK  447 (510)
Q Consensus       436 ~~~~~al~~~~~  447 (510)
                      ..+++++.+...
T Consensus       314 ~~l~~al~~~~~  325 (373)
T 1hz4_A          314 RVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc
Confidence            999999998765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=4.5e-23  Score=204.53  Aligned_cols=312  Identities=17%  Similarity=0.168  Sum_probs=236.9

Q ss_pred             HHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446          121 LFNEVKSMIMMG-------NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (510)
Q Consensus       121 l~~~~~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (510)
                      ....+..+...|       ++++|+..|++++..          .|..+.++..+|.++...|++++|+..+++++... 
T Consensus        21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-   89 (537)
T 3fp2_A           21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-   89 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence            344566677777       478899999999887          77778999999999999999999999999998764 


Q ss_pred             hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH------------------------HhcCC----------
Q 010446          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE------------------------SRYGK----------  239 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------------~~~~~----------  239 (510)
                            |....++..+|.++...|++++|+..|+ ++....                        .....          
T Consensus        90 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~  162 (537)
T 3fp2_A           90 ------PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP  162 (537)
T ss_dssp             ------TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCC
T ss_pred             ------CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence                  3345568999999999999999999995 443211                        11000          


Q ss_pred             --------------------------CChhHHHHHHHHHHHHh--------hcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          240 --------------------------TSILLVTSLLGMAKVLG--------SIGRAKKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       240 --------------------------~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                                                ..+........++..+.        ..|++++|+..++++++.     .++++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~-----~p~~~~  237 (537)
T 3fp2_A          163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA-----NTVDDP  237 (537)
T ss_dssp             CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHH
T ss_pred             hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----CCCcch
Confidence                                      00000112222333322        223555555555555543     122222


Q ss_pred             ----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          286 ----LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       286 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                          .+.++..+|.++...|++++|+..+++++..        .|. ..++..+|.++...|++++|+.++++++..   
T Consensus       238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---  305 (537)
T 3fp2_A          238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL---  305 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH---
T ss_pred             hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc---
Confidence                3557889999999999999999999999985        233 578889999999999999999999999987   


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                          .++.   ..++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+.+++++
T Consensus       306 ----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  370 (537)
T 3fp2_A          306 ----NPEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------PENVYPYIQLACLLYKQGKFTESEAFFNET  370 (537)
T ss_dssp             ----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                3333   3467899999999999999999999998852        334467889999999999999999999999


Q ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446          442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (510)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  490 (510)
                      ++.        .|....++..+|.++...|++++|+.+|++++++....
T Consensus       371 ~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          371 KLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             HHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            985        34556778999999999999999999999999988653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.1e-21  Score=172.82  Aligned_cols=254  Identities=11%  Similarity=0.015  Sum_probs=211.9

Q ss_pred             hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC
Q 010446          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (510)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (510)
                      +..+..+..+|.++...|++++|+.++++++...     ..   ..++..+|.++...|++++|+.++++++++.... .
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~   72 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-----KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-----cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence            3457789999999999999999999999998874     22   2458899999999999999999999999987653 2


Q ss_pred             CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (510)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (510)
                      ++.+....++..+|.++...|++++|+.++++++.+.        +.        +.++...|++++|+..+++++.   
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~--------~~~~~~~~~~~~a~~~~~~~~~---  133 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--------RT--------ADILTKLRNAEKELKKAEAEAY---  133 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC--------HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------ch--------hHHHHHHhHHHHHHHHHHHHHH---
Confidence            2334457899999999999999999999999999872        21        4567788889999999999887   


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (510)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (510)
                           ..|....++..+|.++...|++++|+.++++++..       .++.   ..++..+|.++...|++++|+.++++
T Consensus       134 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          134 -----VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-------APED---ARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------Cccc---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                 36778889999999999999999999999999987       2333   35678999999999999999999999


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHH
Q 010446          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (510)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (510)
                      ++..        .|....++..+|.++...|++++|..++++++++..+..  ..|....++..++.
T Consensus       199 al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          199 AIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred             HHHh--------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence            9885        244567899999999999999999999999999875543  23444555555544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.3e-22  Score=176.22  Aligned_cols=253  Identities=14%  Similarity=0.087  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (510)
                      ....+...|..+...|++++|+.+++++++.          . ..+.++..+|.++...|++++|+..+++++.......
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL----------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            3455788999999999999999999999987          3 4467899999999999999999999999999886655


Q ss_pred             CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (510)
                      ++.+....++..+|.++...|++++|+.++++++.+.     +.           +.++...|++++|+..+++++..  
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~-----------~~~~~~~~~~~~a~~~~~~~~~~--  134 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-----RT-----------ADILTKLRNAEKELKKAEAEAYV--  134 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC-----------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ch-----------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence            5555667889999999999999999999999999862     11           45677788999999999999875  


Q ss_pred             HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (510)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (510)
                            .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++
T Consensus       135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                  5667889999999999999999999999999985        23445788999999999999999999999999


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 010446          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  424 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  424 (510)
                      +.       .++.   ..++..+|.++...|++++|+.++++++++..+..  ..|....++..++.+
T Consensus       201 ~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          201 EK-------DPNF---VRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKA  256 (258)
T ss_dssp             HH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred             Hh-------CHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence            87       2333   45678999999999999999999999999876653  334555555555543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.91  E-value=6.3e-23  Score=184.39  Aligned_cols=261  Identities=12%  Similarity=0.032  Sum_probs=209.0

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (510)
                      +..+...|.++...|++++|+..+++++...    +..   ..++..+|.++...|++++|+..++++++.     ..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~   70 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK----YNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT   70 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT----CCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence            3467889999999999999999999998764    222   235789999999999999999999999872     1233


Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      .....++..+|.++...|++++|+.+++++++.        .|....++..+|.+|...|++++|+.+++++++.     
T Consensus        71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  137 (272)
T 3u4t_A           71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----  137 (272)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence            344778999999999999999999999999997        4556788999999999999999999999999874     


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEE  398 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~  398 (510)
                         .|....++.++|......+++++|+..++++++.       .++.   ...+..+|.++...|+   +++|+..+++
T Consensus       138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~p~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-------KPNI---YIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------Cccc---hHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence               4555678889995555567999999999999987       2333   4566889999999999   9999999999


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH
Q 010446          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  468 (510)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  468 (510)
                      ++++......+.......++..+|.+|...|++++|+.++++++++        +|....+...++.+..
T Consensus       205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC----
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhc
Confidence            9998765432212335578999999999999999999999999985        3444455555554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.91  E-value=2.4e-22  Score=187.33  Aligned_cols=255  Identities=11%  Similarity=-0.023  Sum_probs=216.6

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHh
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN-YEKSMLVYQRVINVLESR  236 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~  236 (510)
                      .|..+.++..+|.++...|++++|+..+++++.+.       |....+++.+|.++...|+ +++|+..|++++.+    
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----  161 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----  161 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----
Confidence            78889999999999999999999999999999875       5556679999999999997 99999999999986    


Q ss_pred             cCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                          +|....++.++|.++...|++++|+..|++++++        .|....++.++|.++...|++++|+.++++++++
T Consensus       162 ----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          162 ----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence                3556789999999999999999999999999998        6777899999999999999999999999999996


Q ss_pred             HHHHcCCCChHHHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--C
Q 010446          317 YTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEA-----VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--R  388 (510)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~  388 (510)
                              +|....+++++|.++.. .|..++|     +.+|++++.+       .|++   ..++.+++.++...|  +
T Consensus       230 --------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-------~P~~---~~a~~~l~~ll~~~g~~~  291 (382)
T 2h6f_A          230 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-------VPHN---ESAWNYLKGILQDRGLSK  291 (382)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHTTTCGGG
T ss_pred             --------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-------CCCC---HHHHHHHHHHHHccCccc
Confidence                    46667899999999999 6665777     5889999987       3444   457789999999988  6


Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc--------C-HHHHHHHHHHH-HHHHHHHhCCCChhhHH
Q 010446          389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--------N-FVEAERLLRIC-LDIMTKTVGPDDQSISF  458 (510)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~~~~~~  458 (510)
                      +++|++.++++ +        ..+....++..+|.+|..+|        + +++|+.+|+++ ++        .+|....
T Consensus       292 ~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r~~  354 (382)
T 2h6f_A          292 YPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIRKE  354 (382)
T ss_dssp             CHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGGHH
T ss_pred             hHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchhHH
Confidence            89998887664 1        34566778889999999885        2 58888888887 55        3677778


Q ss_pred             HHHHHHHHHHhc
Q 010446          459 PMLHLGITLYHL  470 (510)
Q Consensus       459 ~~~~la~~~~~~  470 (510)
                      .|..++..+..+
T Consensus       355 ~w~~~~~~l~~~  366 (382)
T 2h6f_A          355 YWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888887776654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=1.9e-22  Score=181.19  Aligned_cols=259  Identities=13%  Similarity=0.100  Sum_probs=210.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .++..|..++..|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++..    +++.
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~   70 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK----VNAT   70 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHT----------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT----SCTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----cCch
Confidence            3677899999999999999999999987          5566678999999999999999999999999873    2333


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      .....++..+|.++...|++++|+.+|+++++..        |....++..+|.+|...|++++|+.+++++++.     
T Consensus        71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  137 (272)
T 3u4t_A           71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----  137 (272)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence            3346668999999999999999999999999862        334568999999999999999999999999875     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---AEEAVELYKKAL  356 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al  356 (510)
                         .|....++..+|......+++++|+..++++++.        .|....++..+|.++...|+   +++|+..+++++
T Consensus       138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence               5667889999995555566999999999999986        23445788889999999998   999999999999


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 010446          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  426 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  426 (510)
                      +.......  ++......++..+|.++...|++++|+.++++++.+.        |....+...++.+..
T Consensus       207 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          207 EVCAPGGA--KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD--------PTNKKAIDGLKMKLE  266 (272)
T ss_dssp             HHHGGGGG--GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHC----
T ss_pred             HHHhcccc--cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------ccHHHHHHHhhhhhc
Confidence            99765311  1123355788999999999999999999999999862        444455555555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=7.9e-22  Score=183.81  Aligned_cols=235  Identities=9%  Similarity=-0.015  Sum_probs=201.5

Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AKKAVEIYHRVITILE  276 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  276 (510)
                      ..|....++..+|.++...|++++|+..|++++.+        +|....++.++|.++...|+ +++|+..+++++++  
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--  161 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--  161 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence            34778888999999999999999999999999986        35667899999999999997 99999999999998  


Q ss_pred             HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (510)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (510)
                            .|....+++++|.++...|++++|+..|++++++        +|....++.++|.++...|++++|+.++++++
T Consensus       162 ------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          162 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                  6777899999999999999999999999999986        46667899999999999999999999999999


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc-
Q 010446          357 RVIKDSNYMSLDDSIMENMRIDLAELLHI-VGRGQEG-----RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-  429 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-  429 (510)
                      ++       .++.   ..++.++|.++.. .|..++|     +.+|++++.+        .|....++.++|.++...| 
T Consensus       228 ~l-------~P~~---~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~  289 (382)
T 2h6f_A          228 KE-------DVRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGL  289 (382)
T ss_dssp             HH-------CTTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCG
T ss_pred             Hh-------CCCC---HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCc
Confidence            98       3333   4577999999999 5665888     5889998885        3566789999999999988 


Q ss_pred             -CHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcC--------C-hHHHHHHHHHH
Q 010446          430 -NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN--------R-DKEAEKLVLEA  483 (510)
Q Consensus       430 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a  483 (510)
                       ++++|++.++++ +        ..|....++..+|.+|..+|        + +++|+.+|+++
T Consensus       290 ~~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          290 SKYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             GGCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence             689998877664 2        34666778899999999985        2 47777777776

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.89  E-value=4.8e-22  Score=171.63  Aligned_cols=197  Identities=17%  Similarity=0.119  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      ..++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..+++++++        
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------   68 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------   68 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            457889999999999999999999999986        6777899999999999999999999999999986        


Q ss_pred             ChHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 010446          325 DGRVGMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  393 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (510)
                      .|....++.++|.++...           |++++|+..+++++++       .|+.   ..++.++|.++...|++++|+
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~~---~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-------NPRY---APLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-------Cccc---HHHHHHHHHHHHHcCChHHHH
Confidence            355667889999999999           9999999999999998       3444   356789999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCCh
Q 010446          394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  473 (510)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  473 (510)
                      ..|++++++.         ....++.++|.+|...|++++|+..|++++++        +|....++..+|.++...|++
T Consensus       139 ~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          139 ASLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA  201 (217)
T ss_dssp             HHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCH
Confidence            9999999862         34567889999999999999999999999985        466677889999999999999


Q ss_pred             HHHHHHHHHHH
Q 010446          474 KEAEKLVLEAL  484 (510)
Q Consensus       474 ~~A~~~~~~al  484 (510)
                      ++|+..|+++-
T Consensus       202 ~~A~~~~~~~~  212 (217)
T 2pl2_A          202 EEAARAAALEH  212 (217)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.89  E-value=6.7e-22  Score=170.70  Aligned_cols=200  Identities=14%  Similarity=0.129  Sum_probs=161.5

Q ss_pred             hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC
Q 010446          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (510)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (510)
                      |..+.++..+|.++...|++++|+..+++++...       |....++..+|.++...|++++|+..|++++++      
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------   68 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVAR------   68 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            3445688999999999999999999999998764       445566899999999999999999999999986      


Q ss_pred             CCChhHHHHHHHHHHHHhhc-----------CCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 010446          239 KTSILLVTSLLGMAKVLGSI-----------GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE  307 (510)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  307 (510)
                        .|....++.++|.++...           |++++|+..+++++++        .|....++.++|.++...|++++|+
T Consensus        69 --~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           69 --TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHH
Confidence              355577899999999999           9999999999999998        5667889999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 010446          308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  387 (510)
Q Consensus       308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  387 (510)
                      ..|++++++.         ....++.++|.++...|++++|+..|+++++.       .|+.   ..++.++|.++...|
T Consensus       139 ~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~P~~---~~~~~~la~~~~~~g  199 (217)
T 2pl2_A          139 ASLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-------APKD---LDLRVRYASALLLKG  199 (217)
T ss_dssp             HHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHTC--
T ss_pred             HHHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcc
Confidence            9999999972         33567889999999999999999999999987       3444   346689999999999


Q ss_pred             ChHHHHHHHHHHH
Q 010446          388 RGQEGRELLEECL  400 (510)
Q Consensus       388 ~~~~A~~~~~~al  400 (510)
                      ++++|+..++++-
T Consensus       200 ~~~~A~~~~~~~~  212 (217)
T 2pl2_A          200 KAEEAARAAALEH  212 (217)
T ss_dssp             -------------
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998753

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.89  E-value=9.7e-20  Score=178.00  Aligned_cols=284  Identities=14%  Similarity=0.098  Sum_probs=203.7

Q ss_pred             HHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----hCChHHHHHHHHHHHHhh
Q 010446          121 LFNEVKSMIM----MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGIV  192 (510)
Q Consensus       121 l~~~~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  192 (510)
                      .+..+..+..    .+++++|+.+|+++.+.            ..+.++..+|.+|..    .+++++|+.+|+++... 
T Consensus       114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-  180 (490)
T 2xm6_A          114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-  180 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence            3445555555    56666666666666532            234566667777665    66677777777666542 


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh----cCCHHHH
Q 010446          193 DSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKA  264 (510)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A  264 (510)
                           .+   ..+++.+|.+|..    .+++++|+.+|+++.+.       +   ...++..+|.+|..    .+++++|
T Consensus       181 -----~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~g~g~~~~~~~A  242 (490)
T 2xm6_A          181 -----GN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------G---DELGQLHLADMYYFGIGVTQDYTQS  242 (490)
T ss_dssp             -----TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             -----CC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence                 11   2345667777766    67777777777776642       1   13456677777775    6777777


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 010446          265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (510)
Q Consensus       265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (510)
                      +.+++++.+.          ....++..+|.+|..    .+++++|+.+|+++.+.       ++   ..++..+|.+|.
T Consensus       243 ~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~  302 (490)
T 2xm6_A          243 RVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-------GN---SDGQYYLAHLYD  302 (490)
T ss_dssp             HHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-------TC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHH
Confidence            7777777643          124567788888887    78888888888887652       22   346778888888


Q ss_pred             HC-----CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHhhCCCCh
Q 010446          341 AN-----GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG---RGQEGRELLEECLLITEKYKGKEHP  412 (510)
Q Consensus       341 ~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~  412 (510)
                      ..     +++++|+.+|+++.+.       +  +   ..++.++|.+|...|   ++++|+.+|+++.+.          
T Consensus       303 ~~~~g~~~~~~~A~~~~~~a~~~-------~--~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----------  360 (490)
T 2xm6_A          303 KGAEGVAKNREQAISWYTKSAEQ-------G--D---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----------  360 (490)
T ss_dssp             HCBTTBCCCHHHHHHHHHHHHHT-------T--C---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----------
T ss_pred             cCCCCCcCCHHHHHHHHHHHHhc-------C--C---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----------
Confidence            87     8899999999888764       1  1   245688999998876   788999999988763          


Q ss_pred             hHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 010446          413 SFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEAL  484 (510)
Q Consensus       413 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al  484 (510)
                      ....++..+|.+|..    .+++++|+.+|+++.+.       .   ...++.++|.+|..    .+++++|..+|++++
T Consensus       361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  430 (490)
T 2xm6_A          361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-------G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS  430 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            234688899999999    89999999999999872       2   24678999999998    899999999999999


Q ss_pred             HHH
Q 010446          485 YIR  487 (510)
Q Consensus       485 ~~~  487 (510)
                      +..
T Consensus       431 ~~~  433 (490)
T 2xm6_A          431 TND  433 (490)
T ss_dssp             HHH
T ss_pred             HCC
Confidence            876

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.88  E-value=6.4e-20  Score=165.48  Aligned_cols=281  Identities=13%  Similarity=0.046  Sum_probs=213.9

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE-VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (510)
                      .++..+..|+|.+|+..+++....          .|+. ......++.+|...|++++|+..++.         .+.| .
T Consensus         5 ~~~~~~~~g~y~~ai~~~~~~~~~----------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~-~   64 (291)
T 3mkr_A            5 DVKNAFYIGSYQQCINEAQRVKPS----------SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAP-E   64 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCC----------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccC----------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCCh-h
Confidence            456778999999999988865332          4554 45778889999999999999876543         1223 4


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                      ..++..++..+...|++++|+..+++.+..      ..+|....++..+|.++...|++++|+..+++            
T Consensus        65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------  126 (291)
T 3mkr_A           65 LQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------  126 (291)
T ss_dssp             HHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------
Confidence            566888999999999999999999988752      11355567889999999999999999999886            


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (510)
                       +....++..+|.++..+|++++|+..++++++..     +++.. .........++...|++++|+..|+++++.    
T Consensus       127 -~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----  195 (291)
T 3mkr_A          127 -GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADK----  195 (291)
T ss_dssp             -CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----
T ss_pred             -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHh----
Confidence             2346788999999999999999999999998862     33321 111111223344569999999999999987    


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHH-HHHHHHHH
Q 010446          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE-AERLLRIC  441 (510)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a  441 (510)
                         .|+.   ..++.++|.++...|++++|+..+++++..        .|....++.++|.++...|++++ +..+++++
T Consensus       196 ---~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          196 ---CSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             ---SCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             ---CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence               2333   446789999999999999999999999985        35666789999999999999976 57899999


Q ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446          442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (510)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (510)
                      +++     .|++|.+..       ...+.+.++++..-
T Consensus       262 ~~~-----~P~~~~~~d-------~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          262 KDA-----HRSHPFIKE-------YRAKENDFDRLVLQ  287 (291)
T ss_dssp             HHH-----CTTCHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHh-----CCCChHHHH-------HHHHHHHHHHHHHH
Confidence            885     466655443       23444445554443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.88  E-value=1.7e-19  Score=176.23  Aligned_cols=284  Identities=14%  Similarity=0.059  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----hCChHHHHHHHHHHHH
Q 010446          119 LELFNEVKSMIM----MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSG  190 (510)
Q Consensus       119 ~~l~~~~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  190 (510)
                      ...+..+..+..    .+++++|+.+|+++.+.            ..+.++..+|.+|..    .+++++|+.+|+++..
T Consensus        76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A           76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE  143 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            346678888888    89999999999998753            245778899999998    8899999999999865


Q ss_pred             hhhhcCCCchHHHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh----cCCHH
Q 010446          191 IVDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAK  262 (510)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~  262 (510)
                      .      ..   ..+++.+|.+|..    .+++++|+.+|+++.+.          ....++..+|.+|..    .++++
T Consensus       144 ~------~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~  204 (490)
T 2xm6_A          144 Q------GR---DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----------GNVWSCNQLGYMYSRGLGVERNDA  204 (490)
T ss_dssp             T------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             C------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCCCcCHH
Confidence            3      11   3457899999987    88999999999999863          125688899999998    89999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 010446          263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (510)
Q Consensus       263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (510)
                      +|+.+|+++.+.          ....++..+|.+|..    .+++++|+.+|+++++.       .+   ..++.++|.+
T Consensus       205 ~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~  264 (490)
T 2xm6_A          205 ISAQWYRKSATS----------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-------GN---SIAQFRLGYI  264 (490)
T ss_dssp             HHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-------TC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHH
Confidence            999999999864          135678899999997    89999999999999763       22   3577889999


Q ss_pred             HHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhhCC
Q 010446          339 KCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-----GRGQEGRELLEECLLITEKYKGK  409 (510)
Q Consensus       339 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~  409 (510)
                      |..    .+++++|+.+|+++.+.         .+   ..++..+|.+|...     +++++|+.+|+++.+.       
T Consensus       265 y~~g~~~~~d~~~A~~~~~~a~~~---------~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------  325 (490)
T 2xm6_A          265 LEQGLAGAKEPLKALEWYRKSAEQ---------GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------  325 (490)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHTT---------TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHc---------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------
Confidence            998    99999999999998753         12   23568899999998     9999999999998763       


Q ss_pred             CChhHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh----cCChHHHHHHHHH
Q 010446          410 EHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLE  482 (510)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~  482 (510)
                      .   ...++..+|.+|...|   ++++|+.+|+++.+.       .   ...++..+|.+|..    .+++++|..+|++
T Consensus       326 ~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  392 (490)
T 2xm6_A          326 G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK  392 (490)
T ss_dssp             T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            1   2357889999999866   899999999999872       2   34678999999999    8999999999999


Q ss_pred             HHH
Q 010446          483 ALY  485 (510)
Q Consensus       483 al~  485 (510)
                      +.+
T Consensus       393 A~~  395 (490)
T 2xm6_A          393 AAE  395 (490)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            987

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.87  E-value=1.9e-19  Score=162.37  Aligned_cols=261  Identities=15%  Similarity=0.081  Sum_probs=205.2

Q ss_pred             HHHhhCChHHHHHHHHHHHHhhhhcCCCchHH-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010446          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL-DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (510)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (510)
                      ..+..|+|..|+..++++..       ..|.. ......++.+|...|++++|+..++.           ..+....++.
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~-------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----------~~~~~~~a~~   69 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKP-------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----------SSAPELQAVR   69 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCC-------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----------TSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccc-------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----------cCChhHHHHH
Confidence            45678999999998876532       22443 34567789999999999999976543           1234567888


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 010446          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (510)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (510)
                      .++..+...|++++|++.+++.+..      ...|....++..+|.++...|++++|+..+++             |...
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~  130 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSL  130 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCH
Confidence            9999999999999999999988753      01466778899999999999999999999886             2234


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (510)
                      .++..+|.++...|++++|+..++++++.       .++.... .....+..++...|++++|+..|++++..       
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-------~p~~~~~-~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-------  195 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQ-------DEDATLT-QLATAWVSLAAGGEKLQDAYYIFQEMADK-------  195 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHH-HHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CcCcHHH-HHHHHHHHHHhCchHHHHHHHHHHHHHHh-------
Confidence            57888999999999999999999999987       3443221 11112234444568999999999999875       


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHH
Q 010446          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-AEKLVLEALYIRE  488 (510)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~  488 (510)
                       .|....+++++|.++...|++++|+..|++++..        +|....++.++|.++...|++.+ +..++++++++. 
T Consensus       196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-  265 (291)
T 3mkr_A          196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-  265 (291)
T ss_dssp             -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-
T ss_pred             -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-
Confidence             3455678999999999999999999999999985        46667788999999999999976 568889988754 


Q ss_pred             HhcCCCCcc
Q 010446          489 IAFGKDSLP  497 (510)
Q Consensus       489 ~~~~~~~~~  497 (510)
                          |+|+.
T Consensus       266 ----P~~~~  270 (291)
T 3mkr_A          266 ----RSHPF  270 (291)
T ss_dssp             ----TTCHH
T ss_pred             ----CCChH
Confidence                66643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.86  E-value=2.3e-19  Score=161.15  Aligned_cols=223  Identities=15%  Similarity=0.172  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHH
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~  277 (510)
                      ...+++.+|.++...|++++|+.+|+++++.       +   ...++..+|.+|..    .+++++|+.+++++++.   
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---   71 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---   71 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence            3456899999999999999999999999871       2   24678899999999    99999999999999875   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHH
Q 010446          278 NRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAV  349 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  349 (510)
                          +   ...++..+|.+|..    .+++++|+.+|+++++.       +   ...++.++|.+|..    .+++++|+
T Consensus        72 ----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~  134 (273)
T 1ouv_A           72 ----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAV  134 (273)
T ss_dssp             ----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHH
Confidence                1   46788999999999    99999999999999874       2   34678999999999    99999999


Q ss_pred             HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010446          350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  425 (510)
Q Consensus       350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  425 (510)
                      .+|+++++.       +  +   ..++.++|.++..    .+++++|+.+|+++++.       .   ...++..+|.+|
T Consensus       135 ~~~~~a~~~-------~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~  192 (273)
T 1ouv_A          135 EYFTKACDL-------N--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------K---DSPGCFNAGNMY  192 (273)
T ss_dssp             HHHHHHHHT-------T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHH
T ss_pred             HHHHHHHhc-------C--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHH
Confidence            999999875       1  1   3466889999999    99999999999999864       1   246788999999


Q ss_pred             Hh----ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 010446          426 SR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  486 (510)
Q Consensus       426 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  486 (510)
                      ..    .+++++|+.+|+++++.       .+   ..++..+|.+|..    .+++++|..+|++++++
T Consensus       193 ~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          193 HHGEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHTCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HcCCCCCccHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            99    99999999999999983       12   4678999999999    99999999999999885

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.86  E-value=8.4e-20  Score=165.36  Aligned_cols=225  Identities=12%  Similarity=0.077  Sum_probs=173.6

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                      +...|.+|...|++++|+..|++++++....  .+.+..+.++.++|.+|...|++++|+.++++++++.....  +...
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~  115 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRR  115 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHH
Confidence            3344667888999999999999999998764  23446688999999999999999999999999999987653  3344


Q ss_pred             hHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446          286 LVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (510)
Q Consensus       286 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (510)
                      .+.++.++|.+|... |++++|+.+|++++++.....  .......++.++|.++...|++++|+.+|++++.+...   
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---  190 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG---  190 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS---
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---
Confidence            567899999999996 999999999999999986541  22334678999999999999999999999999987432   


Q ss_pred             CCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH--hccCHHHHHHHHHHH
Q 010446          365 MSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS--RSKNFVEAERLLRIC  441 (510)
Q Consensus       365 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a  441 (510)
                       .+.. ......+.++|.++...|++++|+.+|++++.+.....   .......+..++..+.  ..+++++|+..|+++
T Consensus       191 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          191 -NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             -CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             -CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence             1111 13445778999999999999999999999987654331   1112234556666665  467788888888766


Q ss_pred             HH
Q 010446          442 LD  443 (510)
Q Consensus       442 l~  443 (510)
                      +.
T Consensus       267 ~~  268 (292)
T 1qqe_A          267 MR  268 (292)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.86  E-value=1.1e-19  Score=163.28  Aligned_cols=256  Identities=11%  Similarity=0.035  Sum_probs=199.4

Q ss_pred             HHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010446          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (510)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (510)
                      .....|++++|+..+++++...   ....|....++..+|.++...|++++|+.+|+++++..        |....++..
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~   82 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNY   82 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCCHHHHHH
T ss_pred             ccCccchHHHHHHHHHHHHhcc---cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--------CCcHHHHHH
Confidence            3445688999999999988763   23456778889999999999999999999999999862        344678999


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (510)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (510)
                      +|.++...|++++|+.++++++++        .|....++..+|.++...|++++|+.++++++++.     ++++   .
T Consensus        83 la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~---~  146 (275)
T 1xnf_A           83 LGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDP---F  146 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---H
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCh---H
Confidence            999999999999999999999987        44557889999999999999999999999999852     3333   2


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (510)
                      ....++ ++...|++++|+..+++++...       ++....    ..++.++...++.++|+..+++++......    
T Consensus       147 ~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----  210 (275)
T 1xnf_A          147 RSLWLY-LAEQKLDEKQAKEVLKQHFEKS-------DKEQWG----WNIVEFYLGNISEQTLMERLKADATDNTSL----  210 (275)
T ss_dssp             HHHHHH-HHHHHHCHHHHHHHHHHHHHHS-------CCCSTH----HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----
T ss_pred             HHHHHH-HHHHhcCHHHHHHHHHHHHhcC-------CcchHH----HHHHHHHHHhcCHHHHHHHHHHHhcccccc----
Confidence            222222 3466699999999999988762       222222    357888888999999999999887654332    


Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHH
Q 010446          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (510)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (510)
                      .+....++..+|.+|...|++++|+.+|++++.+        .|...   ...+.++...|++++|++.+
T Consensus       211 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred             cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence            2344678999999999999999999999999874        23222   33467788899999998887

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.86  E-value=1.1e-19  Score=164.47  Aligned_cols=233  Identities=13%  Similarity=0.049  Sum_probs=179.2

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (510)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (510)
                      ++++|...|+++                      |.+|...|++++|+.+|++++++..+..  +.+..+.++.++|.+|
T Consensus        32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~   87 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCF   87 (292)
T ss_dssp             HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Confidence            588888888876                      4567789999999999999999987753  3445678999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 010446          298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (510)
Q Consensus       298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (510)
                      ...|++++|+.++++++++....  .+....+.++.++|.+|... |++++|+.+|++++++.+..    .+......++
T Consensus        88 ~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~  161 (292)
T 1qqe_A           88 KSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCF  161 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHH
Confidence            99999999999999999998765  23344678899999999996 99999999999999998752    2334446778


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhh
Q 010446          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  456 (510)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  456 (510)
                      .++|.++..+|++++|+.+|++++.+..... .........+.++|.++..+|++++|+.+|++++.+.....   ....
T Consensus       162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~  237 (292)
T 1qqe_A          162 IKCADLKALDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRE  237 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHH
Confidence            9999999999999999999999998642210 00113345788999999999999999999999988543221   1112


Q ss_pred             HHHHHHHHHHHH--hcCChHHHHHHHHHHH
Q 010446          457 SFPMLHLGITLY--HLNRDKEAEKLVLEAL  484 (510)
Q Consensus       457 ~~~~~~la~~~~--~~g~~~~A~~~~~~al  484 (510)
                      ...+..++..+.  ..+++++|+..|++++
T Consensus       238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            234556666665  4566777777776553

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.85  E-value=3.1e-19  Score=162.89  Aligned_cols=248  Identities=10%  Similarity=0.058  Sum_probs=196.3

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHh-c--CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 010446          215 TLENYEKSMLVYQRVINVLESR-Y--GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  291 (510)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  291 (510)
                      ..|++++|..+++++.+..... +  +++.......+...|.+|...|++++|+.+|.+++++..+..  +....+.++.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~   80 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFE   80 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence            4688999999999998766531 2  233345566777888999999999999999999999987753  3456678899


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (510)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (510)
                      ++|.+|...|++++|+.+|++++++.....  +....+.++.++|.+|.. |++++|+.+|++++.+.+..    .+...
T Consensus        81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~----~~~~~  153 (307)
T 2ifu_A           81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE----ERLRQ  153 (307)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT----TCHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC----CChhH
Confidence            999999999999999999999999986541  233467889999999999 99999999999999998763    34445


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Q 010446          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (510)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (510)
                      ...++.++|.++..+|++++|+.+|++++.+.....  ..+.....+..+|.++..+|++++|+.+|++++ +....   
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~---  227 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF---  227 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence            677889999999999999999999999999887652  234455688899999999999999999999998 53111   


Q ss_pred             CChhhHHHHHHHHHHHHhcCChHHHHH
Q 010446          452 DDQSISFPMLHLGITLYHLNRDKEAEK  478 (510)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (510)
                      ........+..++..+ ..|+.+.+..
T Consensus       228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          228 SGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            1122334456666665 5677665555

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.85  E-value=3.4e-19  Score=162.61  Aligned_cols=247  Identities=10%  Similarity=0.067  Sum_probs=193.9

Q ss_pred             hhCChHHHHHHHHHHHHhhhh--c--CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010446          174 YIGDLKFVQSLLDMMSGIVDS--L--KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (510)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (510)
                      ..|++++|..+++++.+....  +  +.+.......+...|.+|...|++++|+..|.+++++..+.  .+....+.++.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~   80 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE   80 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence            457788888888888775542  1  23444455567777899999999999999999999998775  33456788999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 010446          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (510)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (510)
                      ++|.+|...|++++|+.+|++++++.....  +....+.++.++|.+|.. |++++|+.+|++++++....  .+.....
T Consensus        81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~  155 (307)
T 2ifu_A           81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAA  155 (307)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHH
Confidence            999999999999999999999999987643  333457889999999999 99999999999999998764  1233467


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (510)
                      .++.++|.++...|++++|+.+|++++.+..+.    .........+.++|.++...|++++|+.+|++++ +....   
T Consensus       156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~---  227 (307)
T 2ifu_A          156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM----ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF---  227 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence            889999999999999999999999999998763    2344455678899999999999999999999998 53221   


Q ss_pred             CChhHHHHHHHHHHHHHhccCHHHHHH
Q 010446          410 EHPSFVTHLLNLAASYSRSKNFVEAER  436 (510)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (510)
                      ........+..++..+ ..|+.+.+..
T Consensus       228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          228 SGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            1223344556666665 5677655544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.85  E-value=4.5e-19  Score=159.24  Aligned_cols=225  Identities=15%  Similarity=0.159  Sum_probs=193.4

Q ss_pred             hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHH
Q 010446          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLE  234 (510)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~  234 (510)
                      +..+.++..+|.++...|++++|+.+|+++...      .+   ..+++.+|.+|..    .+++++|+.+|+++++.  
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--   71 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--   71 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--
Confidence            456778999999999999999999999998861      12   2458899999999    99999999999999874  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHH
Q 010446          235 SRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDA  306 (510)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A  306 (510)
                           +   ...++..+|.+|..    .+++++|+.+++++++.       +   ...++..+|.+|..    .+++++|
T Consensus        72 -----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A  133 (273)
T 1ouv_A           72 -----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKA  133 (273)
T ss_dssp             -----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             -----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHH
Confidence                 1   35788899999999    99999999999999875       1   46789999999999    9999999


Q ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 010446          307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL  382 (510)
Q Consensus       307 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~  382 (510)
                      +.+++++++.       +   ...++.++|.++..    .+++++|+.+|+++++.       +  +   ..++..+|.+
T Consensus       134 ~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~--~---~~a~~~lg~~  191 (273)
T 1ouv_A          134 VEYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------K--D---SPGCFNAGNM  191 (273)
T ss_dssp             HHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T--C---HHHHHHHHHH
T ss_pred             HHHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C--C---HHHHHHHHHH
Confidence            9999999974       2   23578899999999    99999999999999865       1  1   3466899999


Q ss_pred             HHH----cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHH
Q 010446          383 LHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDI  444 (510)
Q Consensus       383 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  444 (510)
                      |..    .+++++|+.+++++++.       .+   ..++..+|.+|..    .+++++|+.+|+++++.
T Consensus       192 ~~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          192 YHHGEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHTCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            999    99999999999999874       11   4678899999999    99999999999999985

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.84  E-value=2.7e-19  Score=173.20  Aligned_cols=205  Identities=13%  Similarity=0.107  Sum_probs=176.0

Q ss_pred             CCchHHHHHHHHHHHHHHhhhcH-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          197 DDEPLLDAILLHMGSMYSTLENY-EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      ...+..+.+++.+|.++...|++ ++|+.+|++++++        .|....++..+|.+|...|++++|+.+|++++++ 
T Consensus        96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-  166 (474)
T 4abn_A           96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-  166 (474)
T ss_dssp             TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-
T ss_pred             ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence            33455567799999999999999 9999999999986        2455778999999999999999999999999986 


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHC----
Q 010446          276 ELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN----  342 (510)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----  342 (510)
                             .|. ..++.++|.++...         |++++|+..+++++++        .|....++.++|.++...    
T Consensus       167 -------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~  230 (474)
T 4abn_A          167 -------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNT  230 (474)
T ss_dssp             -------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHT
T ss_pred             -------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhh
Confidence                   344 58899999999999         9999999999999986        345567899999999999    


Q ss_pred             ----CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010446          343 ----GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  418 (510)
Q Consensus       343 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  418 (510)
                          |++++|+.+|++++++.       +..+....++.++|.+|...|++++|+..|++++.+        .|....++
T Consensus       231 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~  295 (474)
T 4abn_A          231 GQNPKISQQALSAYAQAEKVD-------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQ  295 (474)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHC-------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred             ccccchHHHHHHHHHHHHHhC-------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence                99999999999999982       211133567899999999999999999999999986        35556788


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHH
Q 010446          419 LNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                      ..++.++...|++++|+..+.+.
T Consensus       296 ~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          296 QREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999876543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.84  E-value=2.7e-19  Score=157.60  Aligned_cols=219  Identities=15%  Similarity=0.201  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (510)
                      .+..++.+|..+...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++++.       
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   86 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL-------   86 (243)
T ss_dssp             --------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Confidence            4556889999999999999999999999873        3445778999999999999999999999999987       


Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                       .|....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.++++++..   
T Consensus        87 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---  154 (243)
T 2q7f_A           87 -DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---  154 (243)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---
T ss_pred             -CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence             44567889999999999999999999999999862        233457889999999999999999999999987   


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                          .++.   ..++..+|.++...|++++|+.++++++..        .|....++..+|.+|...|++++|+.+++++
T Consensus       155 ----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          155 ----NEND---TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             ----CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             ----CCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                2333   346688999999999999999999999875        2344568899999999999999999999999


Q ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHhc
Q 010446          442 LDIMTKTVGPDDQSISFPMLHLGITLYHL  470 (510)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~  470 (510)
                      +++        .|+...++..++.+....
T Consensus       220 ~~~--------~p~~~~~~~~~~~l~~~~  240 (243)
T 2q7f_A          220 IDI--------QPDHMLALHAKKLLGHHH  240 (243)
T ss_dssp             HHH--------CTTCHHHHHHHTC-----
T ss_pred             Hcc--------CcchHHHHHHHHHHHhhc
Confidence            985        344445555555544433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.83  E-value=4.3e-19  Score=171.81  Aligned_cols=240  Identities=13%  Similarity=0.078  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHHHHHcCChh-------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCh-HHHHHHHHHH
Q 010446          117 QLLELFNEVKSMIMMGNKN-------DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL-KFVQSLLDMM  188 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~-------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~  188 (510)
                      .+..+......++......       .....+++++..+....   ...+..+.++..+|.++...|++ ++|+..|+++
T Consensus        53 ~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~---~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~a  129 (474)
T 4abn_A           53 LVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVL---GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA  129 (474)
T ss_dssp             HHHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHH---TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHh---ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            3344444444454444333       34445555555555433   22556788999999999999999 9999999999


Q ss_pred             HHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhc---------C
Q 010446          189 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------G  259 (510)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g  259 (510)
                      +++.       |....+++.+|.+|...|++++|+.+|++++++.        |. ..++.++|.++...         |
T Consensus       130 l~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~-~~~~~~lg~~~~~~~~~~~~~~~g  193 (474)
T 4abn_A          130 VKLE-------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--------KN-KVSLQNLSMVLRQLQTDSGDEHSR  193 (474)
T ss_dssp             HHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--------CC-HHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred             HhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CC-HHHHHHHHHHHHHhccCChhhhhh
Confidence            9875       4445678999999999999999999999998752        33 48899999999999         9


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 010446          260 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------GKAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (510)
Q Consensus       260 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (510)
                      ++++|+.++++++++        .|....++.++|.+|...        |++++|+..|++++++.     +..+....+
T Consensus       194 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~  260 (474)
T 4abn_A          194 HVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-----RKASSNPDL  260 (474)
T ss_dssp             HHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-----GGGGGCHHH
T ss_pred             hHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-----CCcccCHHH
Confidence            999999999999997        466688999999999999        99999999999999862     111167789


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (510)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (510)
                      +.++|.+|...|++++|+..|++++++       .++.   ..++..++.++...|++++|+..+.+
T Consensus       261 ~~~lg~~~~~~g~~~~A~~~~~~al~l-------~p~~---~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          261 HLNRATLHKYEESYGEALEGFSQAAAL-------DPAW---PEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999998       3343   35678899999999999999887654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.83  E-value=3.1e-19  Score=157.22  Aligned_cols=220  Identities=11%  Similarity=0.093  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC
Q 010446          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (510)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (510)
                      ...+..+..+|.++...|++++|+..+++++...       |....++..+|.++...|++++|+..++++++..     
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----   87 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD-----   87 (243)
T ss_dssp             ----------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence            3456778899999999999999999999998743       3335568899999999999999999999998862     


Q ss_pred             CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (510)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (510)
                         |....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++++.  
T Consensus        88 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--  154 (243)
T 2q7f_A           88 ---SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--  154 (243)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             ---CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence               344678899999999999999999999999987        3445678999999999999999999999999985  


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (510)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (510)
                            .|....++..+|.++...|++++|+.++++++..       .++.   ..++..+|.++...|++++|+.++++
T Consensus       155 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          155 ------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-------DPGH---ADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc---HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                  2334567889999999999999999999999887       2333   34678999999999999999999999


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 010446          399 CLLITEKYKGKEHPSFVTHLLNLAASYSR  427 (510)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~  427 (510)
                      ++.+.        |....++..++.+...
T Consensus       219 ~~~~~--------p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          219 AIDIQ--------PDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHC--------TTCHHHHHHHTC----
T ss_pred             HHccC--------cchHHHHHHHHHHHhh
Confidence            98862        3344555555554443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.83  E-value=1.2e-18  Score=146.34  Aligned_cols=169  Identities=15%  Similarity=0.156  Sum_probs=149.2

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010446          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (510)
                      .+.+|.++|.+|...|++++|+..|++++++        +|....++..+|.++...|++++|+..+.+++..       
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------   68 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------   68 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            4678999999999999999999999999986        4556678999999999999999999999999887       


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (510)
                      .++.   ..++..+|.++...++++.|...+.+++.+        .|....++..+|.+|...|++++|+..|++++++ 
T Consensus        69 ~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-  136 (184)
T 3vtx_A           69 DTTS---AEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-  136 (184)
T ss_dssp             CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             Cchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-
Confidence            3333   345688999999999999999999999875        3455678889999999999999999999999985 


Q ss_pred             HHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010446          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (510)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  488 (510)
                             +|....++.++|.+|..+|++++|+.+|++++++..
T Consensus       137 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          137 -------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred             -------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence                   466678899999999999999999999999998653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.83  E-value=4.9e-18  Score=150.44  Aligned_cols=203  Identities=11%  Similarity=0.042  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (510)
                      ....++..+..+...|++++|+.+++++++.          .|..+.++..+|.++...|++++|+..+++++...    
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----  101 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD----  101 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence            3555788999999999999999999999987          66678899999999999999999999999998774    


Q ss_pred             CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (510)
                         |....++..+|.++...|++++|+.++++++.      .+..+....++..+|.++...|++++|+.+++++++.  
T Consensus       102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--  170 (252)
T 2ho1_A          102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--  170 (252)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence               22345688999999999999999999999876      1234667788999999999999999999999999987  


Q ss_pred             HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (510)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (510)
                            .|....++..+|.++...|++++|+.+++++++.        .|....++..++.++...|++++|..++++++
T Consensus       171 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  236 (252)
T 2ho1_A          171 ------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK  236 (252)
T ss_dssp             ------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence                  3455788899999999999999999999998873        23344677889999999999999999999998


Q ss_pred             HH
Q 010446          357 RV  358 (510)
Q Consensus       357 ~~  358 (510)
                      +.
T Consensus       237 ~~  238 (252)
T 2ho1_A          237 RL  238 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.83  E-value=4.6e-19  Score=178.02  Aligned_cols=177  Identities=19%  Similarity=0.185  Sum_probs=158.8

Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                      ..|..+.++++||.+|..+|++++|+.+|++++++        +|....++.++|.+|..+|++++|+..|++++++   
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            46788999999999999999999999999999986        4566789999999999999999999999999998   


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                          .++.   ..++.++|.++..+|++++|++.|++++++        .|....++.++|.+|..+|++++|+..|+++
T Consensus        73 ----~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  137 (723)
T 4gyw_A           73 ----SPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTA  137 (723)
T ss_dssp             ----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                3333   567899999999999999999999999986        4666789999999999999999999999999


Q ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcC
Q 010446          442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  492 (510)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  492 (510)
                      +++        +|+...++.++|.++..+|++++|.+.+++++++......
T Consensus       138 l~l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~  180 (723)
T 4gyw_A          138 LKL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE  180 (723)
T ss_dssp             HHH--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHh--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHh
Confidence            996        4667788999999999999999999999999999876543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.83  E-value=5.4e-18  Score=150.19  Aligned_cols=203  Identities=13%  Similarity=0.064  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (510)
                      ...++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.+++++++.       
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------  100 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEYRKALAS-------  100 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence            37789999999999999999999999998862        344678999999999999999999999999987       


Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                       .|....++..+|.++...|++++|+.++++++.      .+..+....++..+|.++...|++++|+.+++++++.   
T Consensus       101 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---  170 (252)
T 2ho1_A          101 -DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---  170 (252)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             -CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence             344578899999999999999999999999986      1245667788999999999999999999999999987   


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                          .+..   ..++..+|.++...|++++|+.++++++..        .|.....+..++.++...|++++|..+++++
T Consensus       171 ----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          171 ----NRNQ---PSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             ----CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                2333   346688999999999999999999998763        3344567889999999999999999999999


Q ss_pred             HHH
Q 010446          442 LDI  444 (510)
Q Consensus       442 l~~  444 (510)
                      ++.
T Consensus       236 ~~~  238 (252)
T 2ho1_A          236 KRL  238 (252)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            885

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=6.7e-19  Score=158.20  Aligned_cols=253  Identities=10%  Similarity=0.021  Sum_probs=193.4

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 010446          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (510)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (510)
                      ..|++++|+..++++++..      ....+..+.++..+|.++...|++++|+..+++++...       |....++..+
T Consensus        17 ~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l   83 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASR------ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYL   83 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSS------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhcc------cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHH
Confidence            3578899999999988641      12346788999999999999999999999999998874       3334568999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 010446          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  289 (510)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (510)
                      |.++...|++++|+.+|+++++..        |....++..+|.++...|++++|+.++++++++        .|.....
T Consensus        84 a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~  147 (275)
T 1xnf_A           84 GIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--------DPNDPFR  147 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcC--------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCChHH
Confidence            999999999999999999999862        334578899999999999999999999999987        2222333


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 010446          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (510)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (510)
                      ...++ ++...|++++|+..+++++...     +....    ...++.++...++.++|+..+++++......      .
T Consensus       148 ~~~~~-~~~~~~~~~~A~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~  211 (275)
T 1xnf_A          148 SLWLY-LAEQKLDEKQAKEVLKQHFEKS-----DKEQW----GWNIVEFYLGNISEQTLMERLKADATDNTSL------A  211 (275)
T ss_dssp             HHHHH-HHHHHHCHHHHHHHHHHHHHHS-----CCCST----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH------H
T ss_pred             HHHHH-HHHHhcCHHHHHHHHHHHHhcC-----CcchH----HHHHHHHHHHhcCHHHHHHHHHHHhcccccc------c
Confidence            33333 4466799999999999988752     22221    2347778888999999999999987654331      2


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010446          370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (510)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (510)
                      +....++..+|.++...|++++|+.+|++++.+.        |..   +...+.++...|++++|++.+
T Consensus       212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~---~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--------VHN---FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CTT---CHHHHHHHHHHHHHHHC----
T ss_pred             ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------chh---HHHHHHHHHHHHHHHhhHHHH
Confidence            2335678999999999999999999999998742        221   123366788889999998877

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.82  E-value=1.8e-18  Score=145.20  Aligned_cols=166  Identities=17%  Similarity=0.269  Sum_probs=147.9

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      +.+|.++|.+|...|++++|+..|++++++        +|....++..+|.+|...|++++|+..+.+++..        
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--------   68 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--------   68 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence            568999999999999999999999999997        5667889999999999999999999999999875        


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (510)
                      .+....++..+|.++...++++.|...+.+++..       .++.   ..++..+|.++...|++++|+..|++++++  
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-------~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--  136 (184)
T 3vtx_A           69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-------NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI--  136 (184)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--
Confidence            3444567888999999999999999999999987       3333   346688999999999999999999999986  


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                            +|....++.++|.+|..+|++++|+.+|++++++
T Consensus       137 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          137 ------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence                  3566788999999999999999999999999984

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.82  E-value=1.8e-17  Score=143.86  Aligned_cols=207  Identities=12%  Similarity=0.025  Sum_probs=176.1

Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                      .|....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.+++++++.    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   71 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----   71 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence            35667779999999999999999999999998862        334678899999999999999999999999987    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446          279 RGTESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (510)
                          .|....++..+|.++... |++++|+.+++++++      .+..+....++..+|.++...|++++|+.+++++++
T Consensus        72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  141 (225)
T 2vq2_A           72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA  141 (225)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                345577899999999999 999999999999987      134566678899999999999999999999999988


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010446          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  437 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (510)
                      .       .++.   ..++..+|.++...|++++|+.++++++...     +  ......+..++.++...|++++|..+
T Consensus       142 ~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~a~~~  204 (225)
T 2vq2_A          142 A-------QPQF---PPAFKELARTKMLAGQLGDADYYFKKYQSRV-----E--VLQADDLLLGWKIAKALGNAQAAYEY  204 (225)
T ss_dssp             H-------STTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----C--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             h-------CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence            7       2333   3467889999999999999999999998864     1  03345567888999999999999999


Q ss_pred             HHHHHHH
Q 010446          438 LRICLDI  444 (510)
Q Consensus       438 ~~~al~~  444 (510)
                      ++.+...
T Consensus       205 ~~~~~~~  211 (225)
T 2vq2_A          205 EAQLQAN  211 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.82  E-value=7.8e-19  Score=176.38  Aligned_cols=175  Identities=21%  Similarity=0.275  Sum_probs=157.8

Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      ..|..+.+++++|.++..+|++++|+.+|++++++        +|....++.++|.+|..+|++++|+.+|++++++   
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            45788889999999999999999999999999987        3556789999999999999999999999999998   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (510)
                           .|....++.++|.++..+|++++|+..|++++++        +|....++.++|.++..+|++++|+..|+++++
T Consensus        73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 5777899999999999999999999999999986        456678999999999999999999999999999


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010446          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (510)
                      +       .++.   ..++.++|.++...|++++|++.+++++++....
T Consensus       140 l-------~P~~---~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          140 L-------KPDF---PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             H-------CSCC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             h-------CCCC---hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            8       3444   4567999999999999999999999999987654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.82  E-value=1.2e-17  Score=145.03  Aligned_cols=207  Identities=11%  Similarity=0.010  Sum_probs=175.1

Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      .|....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++..    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   71 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----   71 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence            4667888999999999999999999999999987        3455788999999999999999999999999985    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          321 YGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (510)
                          .|....++..+|.++... |++++|+.++++++..        +..+....++..+|.++...|++++|+.+++++
T Consensus        72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  139 (225)
T 2vq2_A           72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD--------PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS  139 (225)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS--------TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC--------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                233456788999999999 9999999999999871        223334567789999999999999999999999


Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL  479 (510)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (510)
                      +...        |....++..+|.++...|++++|..++++++...     +  ......+..++.++...|+.++|..+
T Consensus       140 ~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~a~~~  204 (225)
T 2vq2_A          140 LAAQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----E--VLQADDLLLGWKIAKALGNAQAAYEY  204 (225)
T ss_dssp             HHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----C--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence            8752        3445788899999999999999999999998852     2  03345567888899999999999999


Q ss_pred             HHHHHHH
Q 010446          480 VLEALYI  486 (510)
Q Consensus       480 ~~~al~~  486 (510)
                      ++.+...
T Consensus       205 ~~~~~~~  211 (225)
T 2vq2_A          205 EAQLQAN  211 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9888764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.81  E-value=4.6e-18  Score=151.46  Aligned_cols=209  Identities=16%  Similarity=0.143  Sum_probs=177.2

Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      +.....++.+|..+...|++++|+..|+++++.     .++++....++..+|.+|...|++++|+..|+++++..    
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----   82 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY----   82 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----
Confidence            445678999999999999999999999999876     33445558899999999999999999999999999863    


Q ss_pred             CCCChHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH--------------HHH
Q 010446          322 GENDGRVGMAMCSLAHAKCA--------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR--------------IDL  379 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--------------~~l  379 (510)
                       |+++....++..+|.++..        .|++++|+..|++++..       .|+.+....+.              ..+
T Consensus        83 -p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~~~~~~~~~~~~~~~l  154 (261)
T 3qky_A           83 -QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-------YPNHELVDDATQKIRELRAKLARKQYEA  154 (261)
T ss_dssp             -TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-------CTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-------CcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence             5566778899999999999        99999999999999987       34444444444              789


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHHHHHHHh
Q 010446          380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS----------KNFVEAERLLRICLDIMTKTV  449 (510)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~  449 (510)
                      |.+|...|++++|+..|++++...     ++++....++..+|.+|...          |++++|+..|+++++.     
T Consensus       155 a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-----  224 (261)
T 3qky_A          155 ARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-----  224 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-----
Confidence            999999999999999999998763     34555778899999999977          9999999999999985     


Q ss_pred             CCCChhhHHHHHHHHHHHHhcCChHHHH
Q 010446          450 GPDDQSISFPMLHLGITLYHLNRDKEAE  477 (510)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (510)
                      .|+++....+...++.++...|+++++.
T Consensus       225 ~p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          225 FPDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             CTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3677777888888999888888776654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.81  E-value=5.9e-18  Score=150.76  Aligned_cols=210  Identities=12%  Similarity=0.090  Sum_probs=177.5

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      .+..+..++.+|..++..|++++|+..|++++...    +.++....+++.+|.++...|++++|+..|+++++..    
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----   82 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY----   82 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----
Confidence            56667899999999999999999999999998764    4455567789999999999999999999999999873    


Q ss_pred             CCCChhHHHHHHHHHHHHhh--------cCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH--------------HHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGS--------IGRAKKAVEIYHRVITILELNRGTESADLVLPL--------------FSLGS  295 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la~  295 (510)
                       ++++....+++.+|.++..        .|++++|+..++++++..     ++++....+.              ..+|.
T Consensus        83 -p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~  156 (261)
T 3qky_A           83 -QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAAR  156 (261)
T ss_dssp             -TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4556778899999999999        999999999999999873     3344444444              88999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHhhccC
Q 010446          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN----------GNAEEAVELYKKALRVIKDSNYM  365 (510)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  365 (510)
                      +|...|++++|+..|+++++..     ++++....++..+|.+|...          |++++|+..|+++++.       
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-------  224 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-------  224 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-------
Confidence            9999999999999999999863     45555778999999999977          9999999999999987       


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHH
Q 010446          366 SLDDSIMENMRIDLAELLHIVGRGQEGR  393 (510)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (510)
                      .|+++....+...++.++...++++++.
T Consensus       225 ~p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          225 FPDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             CTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            5677777777788888888877776544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.78  E-value=1.1e-17  Score=159.99  Aligned_cols=153  Identities=10%  Similarity=0.001  Sum_probs=144.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh
Q 010446          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  412 (510)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  412 (510)
                      ...+..+..+|++++|+.++++++++..+.  ++++++.++.++.+||.+|..+|++++|+.++++++++.++.+|++||
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~--lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPV--FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTT--BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            344556778999999999999999998875  789999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      .++..+++||.+|..+|++++|+.+|++|+++.+..+|++||.+......++.++..+|.+++|...|+++.+..
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987644

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.78  E-value=1.1e-17  Score=159.99  Aligned_cols=153  Identities=10%  Similarity=0.046  Sum_probs=146.6

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 010446          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (510)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (510)
                      ..+..+..+|+|++|+.++++++++..+.++++||.++.++.++|.+|..+|+|++|+.++++++++.++..|++||.++
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            34555778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                      .++++||.+|..+|++++|+.++++|+++.+..+|++||.+.....+++.++..++.+++|+..|.++.+...
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~  466 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL  466 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999977653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.77  E-value=1.3e-16  Score=138.96  Aligned_cols=184  Identities=11%  Similarity=0.057  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      ..+..+|.++...|++++|+..|++++++.       ++....++..+|.++...|++++|+.+++++++.        .
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------N   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence            678999999999999999999999999882       2134567778999999999999999999999974        5


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS----IMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (510)
                      |....++..+|.++...|++++|+..++++++.       .|+++    ....++..+|.++...|++++|+..|+++++
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence            667789999999999999999999999999988       33333    2335789999999999999999999999987


Q ss_pred             HHHHhhCCCChh--HHHHHHHHHHHHHhccCH---------------------------HHHHHHHHHHHHHHHHHhCCC
Q 010446          402 ITEKYKGKEHPS--FVTHLLNLAASYSRSKNF---------------------------VEAERLLRICLDIMTKTVGPD  452 (510)
Q Consensus       402 ~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~  452 (510)
                      +        .|.  ...++..+|.+|...|+.                           ++|+.++++++++     .|+
T Consensus       146 ~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~  212 (228)
T 4i17_A          146 V--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPN  212 (228)
T ss_dssp             S--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTT
T ss_pred             c--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCC
Confidence            4        566  778999999999999988                           8888888888875     233


Q ss_pred             ChhhHHHHHHHHHHH
Q 010446          453 DQSISFPMLHLGITL  467 (510)
Q Consensus       453 ~~~~~~~~~~la~~~  467 (510)
                      +   ..+...++.+.
T Consensus       213 ~---~~~~~~l~~i~  224 (228)
T 4i17_A          213 R---TEIKQMQDQVK  224 (228)
T ss_dssp             C---HHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHH
Confidence            3   44445555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.76  E-value=9.2e-18  Score=161.45  Aligned_cols=254  Identities=12%  Similarity=0.033  Sum_probs=146.7

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCh---HHHHHHHHHHHHhhhhcCCCc
Q 010446          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      ..+..+...|++++|+.+|+++.+.            ..+.+++.+|.+|...|++   ++|+.+|+++...        
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~------------g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------   67 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAEL------------GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------   67 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------------TCCTGGGTCC---------------------------------
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------
Confidence            3677889999999999999998754            2345678899999999998   8999999988743        


Q ss_pred             hHHHHHHHHHHHHHHhhh-----cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                        ...+++.+|.++...|     ++++|+.+|+++++.       +++   .+++++|.+|...+...++...++.....
T Consensus        68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-------g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a  135 (452)
T 3e4b_A           68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-------GEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQW  135 (452)
T ss_dssp             -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-------TCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-------CCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence              2334788999666655     899999999999872       222   26778888888877665554444333333


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC---CHHHHHHH
Q 010446          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVEL  351 (510)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~  351 (510)
                      .+.       ....+...+|.+|...+.++++............    ..++.   ++.++|.+|...|   ++++|+.+
T Consensus       136 ~~~-------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~  201 (452)
T 3e4b_A          136 QAA-------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDI---CYVELATVYQKKQQPEQQAELLKQ  201 (452)
T ss_dssp             HHH-------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHC-------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHHH
Confidence            221       2256777888888888877776665433332221    12332   7778888888888   88888888


Q ss_pred             HHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-H-
Q 010446          352 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-Y-  425 (510)
Q Consensus       352 ~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~-  425 (510)
                      |+++.+.       ++..   +..+.++|.+|...    +++++|+.+|+++.           +....++.++|.+ | 
T Consensus       202 ~~~aa~~-------g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~  260 (452)
T 3e4b_A          202 MEAGVSR-------GTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYD  260 (452)
T ss_dssp             HHHHHHT-------TCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHH
T ss_pred             HHHHHHC-------CCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHh
Confidence            8887764       2222   22335566666543    56666666666653           1223445555555 3 


Q ss_pred             -HhccCHHHHHHHHHHHHH
Q 010446          426 -SRSKNFVEAERLLRICLD  443 (510)
Q Consensus       426 -~~~g~~~~A~~~~~~al~  443 (510)
                       ...+++++|+.+|+++.+
T Consensus       261 ~~~~~d~~~A~~~~~~Aa~  279 (452)
T 3e4b_A          261 FPELGDVEQMMKYLDNGRA  279 (452)
T ss_dssp             SGGGCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence             345566666666665553

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.75  E-value=1.5e-16  Score=138.56  Aligned_cols=170  Identities=12%  Similarity=0.165  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (510)
                      +..+..+|.++...|++++|+..|++++.+..   ...+   .+++.+|.++...|++++|+.+++++++.        .
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~   72 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN---NQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKK--------N   72 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC---CCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence            47899999999999999999999999998752   1222   34677999999999999999999999974        3


Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc----chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                      |....++..+|.+|...|++++|+..+++++++.     ++++    ..+.++..+|.++...|++++|+..|++++++ 
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-  146 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-  146 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-
Confidence            5667889999999999999999999999999872     1222    12367999999999999999999999999874 


Q ss_pred             HHHcCCCChH--HHHHHHHHHHHHHHCCCH---------------------------HHHHHHHHHHHHH
Q 010446          318 TKVYGENDGR--VGMAMCSLAHAKCANGNA---------------------------EEAVELYKKALRV  358 (510)
Q Consensus       318 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~  358 (510)
                             +|.  ...++.++|.++...|+.                           ++|+.++++++++
T Consensus       147 -------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          147 -------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             -------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                   567  788999999999998888                           8888888888887

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.74  E-value=5e-16  Score=132.43  Aligned_cols=178  Identities=13%  Similarity=0.029  Sum_probs=147.5

Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHH
Q 010446          298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI  377 (510)
Q Consensus       298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  377 (510)
                      ...|++++|...++....        +......++..+|.++...|++++|+.++++++.+....    .+++....++.
T Consensus         3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~   70 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS----GDHTAEHRALH   70 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CCHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----CCcHHHHHHHH
Confidence            467899999985544321        334577899999999999999999999999999998863    45667788899


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhH
Q 010446          378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  457 (510)
Q Consensus       378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  457 (510)
                      ++|.++...|++++|+.++++++.+.+.. +........++.++|.++...|++++|+.++++++.+....  .+.....
T Consensus        71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~  147 (203)
T 3gw4_A           71 QVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIA  147 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHH
Confidence            99999999999999999999999998754 22233677889999999999999999999999999987654  2334456


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (510)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  490 (510)
                      .++..+|.++...|++++|..++++++++.++.
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence            678999999999999999999999999999885

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.74  E-value=1.5e-16  Score=152.97  Aligned_cols=287  Identities=13%  Similarity=0.052  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHcC-----ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446          121 LFNEVKSMIMMG-----NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (510)
Q Consensus       121 l~~~~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (510)
                      .+..+..+...|     ++++|+.+|+++++.            ..+.+++.+|.+|...+..+++...++........ 
T Consensus        72 ~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~------------g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-  138 (452)
T 3e4b_A           72 QARLGRLLAAKPGATEAEHHEAESLLKKAFAN------------GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-  138 (452)
T ss_dssp             HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT------------TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-
Confidence            555666555555     788999999998763            12237888999998877666554444443333221 


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC---CHHHHHHHHHHHH
Q 010446          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVI  272 (510)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al  272 (510)
                      +.     ..+.+.+|.+|...+.++++............    ..++.   +++.+|.+|...|   ++++|+.+|+++.
T Consensus       139 g~-----~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa  206 (452)
T 3e4b_A          139 GY-----PEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV  206 (452)
T ss_dssp             TC-----TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CC-----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence            11     23478899999999877766665443333221    12232   7889999999999   9999999999998


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH-H--HHCCCH
Q 010446          273 TILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-K--CANGNA  345 (510)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~  345 (510)
                      +.        .+..+..++++|.+|...    +++++|+.+|+++.           +....+++++|.+ +  ...+++
T Consensus       207 ~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~  267 (452)
T 3e4b_A          207 SR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDV  267 (452)
T ss_dssp             HT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCH
T ss_pred             HC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCH
Confidence            75        344566668899999765    79999999999885           2234678889998 4  468999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 010446          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-----RGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  420 (510)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  420 (510)
                      ++|+.+|+++.+.       +  +   ..++.++|.+|. .|     ++++|+.+|+++.           +....++.+
T Consensus       268 ~~A~~~~~~Aa~~-------g--~---~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g~~~A~~~  323 (452)
T 3e4b_A          268 EQMMKYLDNGRAA-------D--Q---PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----------GREVAADYY  323 (452)
T ss_dssp             HHHHHHHHHHHHT-------T--C---HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----------TTCHHHHHH
T ss_pred             HHHHHHHHHHHHC-------C--C---HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----------CCCHHHHHH
Confidence            9999999998854       1  2   346688999998 55     9999999999875           233578889


Q ss_pred             HHHHHHh----ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 010446          421 LAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALY  485 (510)
Q Consensus       421 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  485 (510)
                      ||.+|..    ..++++|..+|+++.+       ..+   ..+..+||.+|..    ..++.+|..+|+++.+
T Consensus       324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          324 LGQIYRRGYLGKVYPQKALDHLLTAAR-------NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             HHHHHHTTTTSSCCHHHHHHHHHHHHT-------TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCcCHHHHHHHHHHHHh-------hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            9999887    4499999999999876       222   3567899999885    4689999999999865

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.74  E-value=5.6e-16  Score=140.35  Aligned_cols=193  Identities=11%  Similarity=0.024  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhh
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE---VAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (510)
                      ....+...+..+...|++++|+.++++++..       ....+..   ...+..+|.++...|++++|+.++++++.+..
T Consensus        74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~  146 (293)
T 3u3w_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-------EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL  146 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-------ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence            3444666788899999999999999998864       2223332   33455689999999999999999999998654


Q ss_pred             hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (510)
                      . ..+......++.++|.+|...|++++|+.+|+++++..... ..+.+..+.++.++|.+|..+|++++|+.+++++++
T Consensus       147 ~-~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          147 T-GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             C-CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             c-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3 22334456679999999999999999999999999988764 235567788999999999999999999999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHH
Q 010446          274 ILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTKV  320 (510)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~  320 (510)
                      +.....  +....+.++.++|.+|..+|+ +++|+.++++|+.+.+..
T Consensus       225 ~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          225 ISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            987753  455668899999999999995 699999999999998875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.74  E-value=1e-15  Score=138.67  Aligned_cols=195  Identities=11%  Similarity=-0.007  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (510)
                      ....+...+..+...|++++|+..+.++++....    ..........+..+|.++...|++++|+..+++++...... 
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-  148 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-  148 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC----CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC----ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-
Confidence            4455778889999999999999999998875110    00012234556779999999999999999999999876542 


Q ss_pred             CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      .+......+++.+|.+|...|++++|+.+|++++++....  ++.+. ...++.++|.+|...|++++|+.++++++++.
T Consensus       149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3334456789999999999999999999999999987764  23333 33789999999999999999999999999997


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 010446          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDA-ESVFSRILKIYTKV  320 (510)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  320 (510)
                      ...  .+....+.++.++|.+|...|++++| ..++++++.+.+..
T Consensus       227 ~~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          227 CRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             Hhc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            553  24455688999999999999999999 88899999988765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.74  E-value=4.9e-16  Score=140.72  Aligned_cols=195  Identities=9%  Similarity=0.018  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (510)
                      ....+...+..+...|++++|+..+.++++....  ..........+..+|.++...|++++|+.++++++++....  .
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~  149 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--I  149 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--S
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--C
Confidence            3344667888999999999999999999875321  01112345567789999999999999999999999764332  1


Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                      +......+++++|.+|...|++++|+.++++++++.+...  +.+. ...++.++|.+|..+|++++|+.++++++.+..
T Consensus       150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            2334567899999999999999999999999999877652  3333 337899999999999999999999999999986


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEG-RELLEECLLITEKY  406 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  406 (510)
                      .    ..+......++.++|.+|...|++++| ..++++++.+.+..
T Consensus       228 ~----~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          228 R----INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             H----TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             h----cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            5    344555678899999999999999999 88899999988765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.73  E-value=6.6e-16  Score=131.67  Aligned_cols=195  Identities=13%  Similarity=0.138  Sum_probs=154.9

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHH
Q 010446          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL  207 (510)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (510)
                      ++..|++++|...++....          +....+.++..+|.++...|++++|+.++++++.+.... ++.+....++.
T Consensus         2 ~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~   70 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA----------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-GDHTAEHRALH   70 (203)
T ss_dssp             -----CHHHHHHHHHHHHT----------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc-CCcHHHHHHHH
Confidence            3567899999985544321          144678899999999999999999999999999988774 35567788899


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 010446          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (510)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (510)
                      .+|.++...|++++|+.++++++++.+.. +.+......++.++|.++...|++++|+.++++++++.+...  +.....
T Consensus        71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~  147 (203)
T 3gw4_A           71 QVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIA  147 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHH
Confidence            99999999999999999999999998754 223236788899999999999999999999999999877643  334456


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 010446          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (510)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (510)
                      .++.++|.++...|++++|..++++++++.++..  +......+...++.+
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE--DSEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcccch
Confidence            7789999999999999999999999999988762  233345555555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=6.6e-15  Score=145.23  Aligned_cols=309  Identities=13%  Similarity=0.050  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +...+. +...|++++|...|+++++.          .|.....|..++..+...|++++|...|++++...       |
T Consensus        16 w~~l~~-~~~~~~~~~a~~~~e~al~~----------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-------p   77 (530)
T 2ooe_A           16 WSILIR-EAQNQPIDKARKTYERLVAQ----------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-------L   77 (530)
T ss_dssp             HHHHHH-HHHSSCHHHHHHHHHHHHTT----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-------C
T ss_pred             HHHHHH-HHHhCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------C
Confidence            333444 36789999999999999987          78888999999999999999999999999998764       2


Q ss_pred             HHHHHHHHHHH-HHHhhhcHHHHHH----HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh---------cCCHHHHHH
Q 010446          201 LLDAILLHMGS-MYSTLENYEKSML----VYQRVINVLESRYGKTSILLVTSLLGMAKVLGS---------IGRAKKAVE  266 (510)
Q Consensus       201 ~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~  266 (510)
                      .. .++...+. .....|++++|.+    .|++++...    +. ++.....+...+.....         .|++++|..
T Consensus        78 ~~-~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~----g~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (530)
T 2ooe_A           78 HI-DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI----GM-EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR  151 (530)
T ss_dssp             CH-HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT----TT-STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred             Ch-HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC----CC-CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence            21 23454443 3344566666554    444444321    11 11111222222222211         233333333


Q ss_pred             HHHHHHHH------------------------------------------------HHHhc------CC-----------
Q 010446          267 IYHRVITI------------------------------------------------LELNR------GT-----------  281 (510)
Q Consensus       267 ~~~~al~~------------------------------------------------~~~~~------~~-----------  281 (510)
                      +|++++..                                                .....      .+           
T Consensus       152 ~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~  231 (530)
T 2ooe_A          152 VYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD  231 (530)
T ss_dssp             HHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred             HHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence            33332210                                                00000      00           


Q ss_pred             -----------------------------------CCcchHHHHHHHHHHHHH-------cCChH-------HHHHHHHH
Q 010446          282 -----------------------------------ESADLVLPLFSLGSLFIK-------EGKAV-------DAESVFSR  312 (510)
Q Consensus       282 -----------------------------------~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~  312 (510)
                                                         ..|....++..+|..+..       .|+++       +|+..+++
T Consensus       232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~  311 (530)
T 2ooe_A          232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER  311 (530)
T ss_dssp             HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence                                               012334566677777765       68877       67777777


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHH
Q 010446          313 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG  392 (510)
Q Consensus       313 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  392 (510)
                      +++.       ..|.....+..+|.++...|++++|...|++++++       .+..+  ..++..++.++.+.|++++|
T Consensus       312 Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~~--~~~~~~~~~~~~~~~~~~~A  375 (530)
T 2ooe_A          312 AIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDP--TLVYIQYMKFARRAEGIKSG  375 (530)
T ss_dssp             HTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------SSSCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-------cccCc--hHHHHHHHHHHHHhcCHHHH
Confidence            7641       13555678889999999999999999999999985       33332  23678888888888999999


Q ss_pred             HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcC
Q 010446          393 RELLEECLLITEKYKGKEHPSFVTHLLNLAAS-YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  471 (510)
Q Consensus       393 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  471 (510)
                      +..|+++++..        |.....+...+.+ +...|++++|...|+++++..        |....++..++.++...|
T Consensus       376 ~~~~~~Al~~~--------~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g  439 (530)
T 2ooe_A          376 RMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLN  439 (530)
T ss_dssp             HHHHHHHHTCT--------TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHhcc--------CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCC
Confidence            99999887631        1122233333333 335788888888888887742        333456677777777888


Q ss_pred             ChHHHHHHHHHHHH
Q 010446          472 RDKEAEKLVLEALY  485 (510)
Q Consensus       472 ~~~~A~~~~~~al~  485 (510)
                      +.++|..+|++++.
T Consensus       440 ~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          440 EDNNTRVLFERVLT  453 (530)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHhhHHHHHHHHHh
Confidence            88888888888776

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.73  E-value=3.6e-15  Score=143.38  Aligned_cols=238  Identities=8%  Similarity=-0.023  Sum_probs=195.4

Q ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC----------chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446          165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD----------EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (510)
Q Consensus       165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (510)
                      ....|..+...|+|++|++.|.++++..+..++.          ......++..+|.+|...|++++|.+++.+++....
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4456777889999999999999998865442211          123445688999999999999999999999999876


Q ss_pred             HhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (510)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (510)
                      ..  .+......+...++.++...|++++|+.++++++.+.....  +.+....++.++|.+|...|++++|..++++++
T Consensus        87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  162 (434)
T 4b4t_Q           87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLL  162 (434)
T ss_dssp             TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            54  22234456677889999999999999999999999987754  456678889999999999999999999999998


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 010446          315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (510)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (510)
                      ......  .+.+....++..++.+|...|++++|..++++++.+....   ...+......+..+|.++...|++++|..
T Consensus       163 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          163 REFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI---YCPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC---CCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            876554  3567788999999999999999999999999999988763   33345567788899999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCC
Q 010446          395 LLEECLLITEKYKGKEH  411 (510)
Q Consensus       395 ~~~~al~~~~~~~~~~~  411 (510)
                      +|.+++...........
T Consensus       238 ~~~~a~~~~~~~~~~~~  254 (434)
T 4b4t_Q          238 YFFESFESYHNLTTHNS  254 (434)
T ss_dssp             HHHHHHHHHHHTTTSSC
T ss_pred             HHHHHHHHhhhhhhhhh
Confidence            99999998877644433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=3.5e-15  Score=147.18  Aligned_cols=213  Identities=13%  Similarity=0.051  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHhh-------cCCHH-------HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 010446          245 VTSLLGMAKVLGS-------IGRAK-------KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF  310 (510)
Q Consensus       245 ~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  310 (510)
                      ..++..+|..+..       .|+++       +|...++++++.       ..|.....+..+|.++...|++++|...|
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~  344 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIY  344 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            4456667777765       68876       777777777651       14666888999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH-HHHcCCh
Q 010446          311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL-LHIVGRG  389 (510)
Q Consensus       311 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~  389 (510)
                      ++++++     .+.++  ..++..++.++...|++++|...|+++++.       .+...   ..+...+.+ +...|++
T Consensus       345 ~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-------~~~~~---~~~~~~a~~~~~~~~~~  407 (530)
T 2ooe_A          345 NRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARED-------ARTRH---HVYVTAALMEYYCSKDK  407 (530)
T ss_dssp             HHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------TTCCT---HHHHHHHHHHHHHTCCH
T ss_pred             HHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------cCCch---HHHHHHHHHHHHHcCCh
Confidence            999984     22222  357888999999999999999999999875       22222   122333433 3468999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh-hHHHHHHHHHHHH
Q 010446          390 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLGITLY  468 (510)
Q Consensus       390 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~  468 (510)
                      ++|..+|+++++..        |....++..++.++...|+.++|..+|++++..     .+.+|. ....+........
T Consensus       408 ~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~  474 (530)
T 2ooe_A          408 SVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPEKSGEIWARFLAFES  474 (530)
T ss_dssp             HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHH
Confidence            99999999999864        344577889999999999999999999999873     233443 3446667777888


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhcCCC
Q 010446          469 HLNRDKEAEKLVLEALYIREIAFGKD  494 (510)
Q Consensus       469 ~~g~~~~A~~~~~~al~~~~~~~~~~  494 (510)
                      ..|+.+.+..+++++++...+-.+..
T Consensus       475 ~~G~~~~~~~~~~r~~~~~p~~~~~~  500 (530)
T 2ooe_A          475 NIGDLASILKVEKRRFTAFREEYEGK  500 (530)
T ss_dssp             HSSCHHHHHHHHHHHHHHTHHHHTTC
T ss_pred             HcCCHHHHHHHHHHHHHHCchhccCc
Confidence            89999999999999999987655444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.72  E-value=1e-15  Score=138.67  Aligned_cols=194  Identities=11%  Similarity=0.065  Sum_probs=158.6

Q ss_pred             hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH---HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 010446          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL---LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR  236 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  236 (510)
                      .....+...+..+...|++++|...+++++...    ...+.   ....+..+|.++...|++++|+.++++++.+... 
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-  147 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-
Confidence            334445556778889999999999999988753    22233   2344556999999999999999999999985322 


Q ss_pred             cCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                       ..+....+.++.++|.+|...|++++|+.+++++++..+... .+.+..+.++.++|.+|..+|++++|+.++++++++
T Consensus       148 -~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          148 -GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             -CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence             122334567899999999999999999999999999887753 256677789999999999999999999999999999


Q ss_pred             HHHHcCCCChHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhh
Q 010446          317 YTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  362 (510)
                      ....  .+....+.++.++|.++...| .+++|+.++++++.+.+..
T Consensus       226 ~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          226 SCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            8775  245567889999999999999 5799999999999998864

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.72  E-value=1e-15  Score=139.65  Aligned_cols=224  Identities=9%  Similarity=0.004  Sum_probs=178.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-------hCCh-------HHHHHHHHHHHHhhhhcCCCch
Q 010446          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-------IGDL-------KFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ++|+..|++++..          .|..+.+|..+|..+..       .|++       ++|...|++++...   .   |
T Consensus        33 ~~a~~~~~~al~~----------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~---~---p   96 (308)
T 2ond_A           33 KRVMFAYEQCLLV----------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---L---K   96 (308)
T ss_dssp             HHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT---T---T
T ss_pred             HHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh---C---c
Confidence            6888999999987          78888999999988864       5886       89999999998732   1   3


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ....++..+|.++...|++++|...|++++++     .++++.  .++..+|.++...|++++|...|+++++.      
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------  163 (308)
T 2ond_A           97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARED------  163 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTS------
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------
Confidence            44556899999999999999999999999974     222222  27889999999999999999999999875      


Q ss_pred             CCCcchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                        .|.....+...+.+.. ..|++++|...|+++++..        |....++..++.++...|++++|..+|++++...
T Consensus       164 --~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  233 (308)
T 2ond_A          164 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             --TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             --CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence              2333455555555543 3799999999999999863        3345778899999999999999999999998741


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (510)
                      .    ..+  .....++..++..+...|++++|..+++++++..
T Consensus       234 ~----l~p--~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          234 S----LPP--EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             S----SCG--GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             C----CCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            0    011  1234567888999999999999999999998875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.71  E-value=4.6e-15  Score=135.35  Aligned_cols=225  Identities=14%  Similarity=0.063  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh-------cCCH-------HHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          220 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS-------IGRA-------KKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                      ++|+..|++++...        |....++..+|..+..       .|++       ++|...|+++++..       .|.
T Consensus        33 ~~a~~~~~~al~~~--------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~   97 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKK   97 (308)
T ss_dssp             HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTT
T ss_pred             HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-------Ccc
Confidence            68889999999864        4456778888888763       5886       89999999998721       456


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010446          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (510)
                      ...++..+|.++...|++++|...|++++++     .+.++.  .++.++|.++...|++++|...|+++++.       
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------  163 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARED-------  163 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-------
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------
Confidence            6788999999999999999999999999984     223332  27889999999999999999999999875       


Q ss_pred             CCCChHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          366 SLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      .+...   .++...+.+.. ..|++++|+..|++++...        |....++..+|.++...|++++|+..|++++..
T Consensus       164 ~p~~~---~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          164 ARTRH---HVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             TTCCT---HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            23332   23444454433 3799999999999999864        344678899999999999999999999999882


Q ss_pred             HHHHhCCCCh-hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010446          445 MTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       445 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  489 (510)
                      .     .-.| .....+..++..+...|+.++|..+++++++....
T Consensus       233 ~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          233 G-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             S-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             c-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            0     1133 35567788899999999999999999999987643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=5.2e-15  Score=142.25  Aligned_cols=239  Identities=11%  Similarity=0.040  Sum_probs=193.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (510)
                      ....|..+...|+|++|++.|.++++..+......         ......++..+|.+|...|++++|.+++.+++....
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            34567778889999999999999987643321100         123456789999999999999999999999999876


Q ss_pred             HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010446          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (510)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (510)
                      ...  +......+...++.++...|++++|+.++++++.+.....  +.+....++.++|.++...|++++|..++++++
T Consensus        87 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  162 (434)
T 4b4t_Q           87 QFA--KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLL  162 (434)
T ss_dssp             TSC--HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hcc--chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            542  2223345677889999999999999999999999987753  445577889999999999999999999999999


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010446          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (510)
                      .....    ..+.+....++..++.+|...|++++|..++++++.+..... ..+......+..+|.++...|++++|..
T Consensus       163 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          163 REFKK----LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHTT----SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHh----cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            88765    355677788999999999999999999999999999877653 2223456788899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 010446          437 LLRICLDIMTKTVGPDD  453 (510)
Q Consensus       437 ~~~~al~~~~~~~~~~~  453 (510)
                      +|.++++..........
T Consensus       238 ~~~~a~~~~~~~~~~~~  254 (434)
T 4b4t_Q          238 YFFESFESYHNLTTHNS  254 (434)
T ss_dssp             HHHHHHHHHHHTTTSSC
T ss_pred             HHHHHHHHhhhhhhhhh
Confidence            99999998776644443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.69  E-value=9e-15  Score=126.74  Aligned_cols=177  Identities=13%  Similarity=0.070  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      ...++.+|..+...|++++|+..|+++++.     .++.+....++..+|.+|...|++++|+..|+++++.     .|+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~   73 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT   73 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence            456888999999999999999999999986     3344555678999999999999999999999999986     355


Q ss_pred             ChHHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH------------
Q 010446          325 DGRVGMAMCSLAHAKCA------------------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN------------  374 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------  374 (510)
                      ++....++..+|.++..                  .|++++|+..|+++++..       |+.+....            
T Consensus        74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~~~~~~~  146 (225)
T 2yhc_A           74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLVFLKDRL  146 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHHHHHHHH
Confidence            66666788888888875                  678999999999998763       33333222            


Q ss_pred             --HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          375 --MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       375 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                        ....+|.+|...|++++|+..|+++++..     ++.+....++..+|.+|..+|++++|+..++.+..
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence              22568999999999999999999998864     44566678899999999999999999999997766

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.68  E-value=3.4e-15  Score=125.04  Aligned_cols=173  Identities=16%  Similarity=0.098  Sum_probs=148.4

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      .......+..+|.++...|++++|+..+++++...       |....++..+|.++...|++++|+.+++++++..    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----   72 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----   72 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Confidence            44567788999999999999999999998876543       2234568899999999999999999999998862    


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                          |....++..+|.++...|++++|+.++++++..        .|.....+..+|.++...|++++|+.++++++...
T Consensus        73 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  140 (186)
T 3as5_A           73 ----PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR  140 (186)
T ss_dssp             ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence                344677889999999999999999999999987        34456788999999999999999999999998852


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                              |....++..+|.++...|++++|..+++++++....
T Consensus       141 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          141 --------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             --------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence                    334578889999999999999999999999988653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.68  E-value=4e-15  Score=124.59  Aligned_cols=171  Identities=16%  Similarity=0.103  Sum_probs=146.5

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (510)
                      ......+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|..+++++++.     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----   71 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----   71 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence            445678889999999999999999999998763        3344678899999999999999999999999987     


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                        .++.   ..++..+|.++...|++++|..++++++..        .|....++..+|.++...|++++|+.++++++.
T Consensus        72 --~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  138 (186)
T 3as5_A           72 --APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALG  138 (186)
T ss_dssp             --CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence              2333   346688999999999999999999999876        234457888999999999999999999999998


Q ss_pred             HHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010446          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (510)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  488 (510)
                      .        .|....++..+|.++...|++++|..++++++++..
T Consensus       139 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          139 L--------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             c--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            5        244567889999999999999999999999998763

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.68  E-value=1.5e-14  Score=125.34  Aligned_cols=176  Identities=12%  Similarity=0.032  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                      ..++.+|..+...|++++|+..|+++++..     ++++....++..+|.+|...|++++|+..|+++++.     .+++
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~   74 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTH   74 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCC
Confidence            347899999999999999999999999863     445566788999999999999999999999999987     3345


Q ss_pred             cchHHHHHHHHHHHHH------------------cCChHHHHHHHHHHHHHHHHHcCCCChHHHH--------------H
Q 010446          284 ADLVLPLFSLGSLFIK------------------EGKAVDAESVFSRILKIYTKVYGENDGRVGM--------------A  331 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~  331 (510)
                      +....++..+|.++..                  .|++++|+..|+++++..     |+++....              .
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~~  149 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKY  149 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHH
Confidence            5555688889988876                  578999999999998753     33332222              2


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (510)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (510)
                      ...+|.+|...|++++|+..|+++++.       .|+.+....++..+|.++...|++++|+..++++..
T Consensus       150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          150 EYSVAEYYTERGAWVAVVNRVEGMLRD-------YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHH-------CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            257889999999999999999999988       456666677889999999999999999999987655

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.67  E-value=1.2e-14  Score=149.15  Aligned_cols=253  Identities=11%  Similarity=-0.027  Sum_probs=155.2

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHH
Q 010446          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (510)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (510)
                      |..+...|.+++|..+|+++-..           ..      .+...+...|++++|.++++++            ....
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~~-----------~~------A~~VLie~i~nldrAiE~Aerv------------n~p~ 1106 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDVN-----------TS------AVQVLIEHIGNLDRAYEFAERC------------NEPA 1106 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCH-----------HH------HHHHHHHHHhhHHHHHHHHHhc------------CCHH
Confidence            56667777778877777775211           10      1111233566667776666643            1133


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010446          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (510)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (510)
                      +|+.+|..+...|++++|+..|.++             .....+..+|.++...|++++|++++..+.+..+.       
T Consensus      1107 vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------- 1166 (1630)
T 1xi4_A         1107 VWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------- 1166 (1630)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-------
Confidence            4778888888888888888888665             11345667788888888888888888877765211       


Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (510)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (510)
                        ......+|.+|.+++++++ .+.|.   .         .+.. ..+..+|..+...|++++|..+|.++-        
T Consensus      1167 --~~Idt~LafaYAKl~rlee-le~fI---~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~-------- 1222 (1630)
T 1xi4_A         1167 --SYVETELIFALAKTNRLAE-LEEFI---N---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS-------- 1222 (1630)
T ss_pred             --ccccHHHHHHHHhhcCHHH-HHHHH---h---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh--------
Confidence              1112237777777777764 32221   1         1112 244568888888888888888887752        


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                                .|..+|.++.+.|++++|++.+++|...             .+|...+.++...|++..|..+... +. 
T Consensus      1223 ----------ny~rLA~tLvkLge~q~AIEaarKA~n~-------------~aWkev~~acve~~Ef~LA~~cgl~-Ii- 1277 (1630)
T 1xi4_A         1223 ----------NFGRLASTLVHLGEYQAAVDGARKANST-------------RTWKEVCFACVDGKEFRLAQMCGLH-IV- 1277 (1630)
T ss_pred             ----------HHHHHHHHHHHhCCHHHHHHHHHHhCCH-------------HHHHHHHHHHhhhhHHHHHHHHHHh-hh-
Confidence                      3466788888888888888887776321             4455556666666666666655442 11 


Q ss_pred             HHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                             .+++.   +..++..|...|.+++|+.++++++.
T Consensus      1278 -------v~~de---Leeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A         1278 -------VHADE---LEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred             -------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence                   12222   34566666777777777777766654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.67  E-value=1.3e-15  Score=143.20  Aligned_cols=116  Identities=16%  Similarity=0.044  Sum_probs=112.0

Q ss_pred             HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHH
Q 010446          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (510)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (510)
                      ..|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||+++..+.+||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 010446          465 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKL  500 (510)
Q Consensus       465 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  500 (510)
                      .+|..+|++++|+.+|++|+++.+..+|++||.+.-
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            999999999999999999999999999999965543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.67  E-value=7.6e-16  Score=155.73  Aligned_cols=200  Identities=15%  Similarity=0.150  Sum_probs=163.0

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (510)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (510)
                      ...|++++|++.++++++.....  .....|..+.++..+|.++...|++++|+..++++++..       |....+++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~--~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~  472 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDA--DGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWRWRLVWY  472 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCCHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccc--cccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cchHHHHHH
Confidence            78899999999999998211000  012267788899999999999999999999999999875       334566899


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 010446          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (510)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (510)
                      +|.++...|++++|+..|++++++.        |....++.++|.++...|++++ +..|++++++        .|....
T Consensus       473 lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~  535 (681)
T 2pzi_A          473 RAVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVIS  535 (681)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHH
Confidence            9999999999999999999999873        4446788999999999999999 9999999997        566788


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHhh
Q 010446          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-VELYKKALRVIKDS  362 (510)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  362 (510)
                      +++++|.++...|++++|+..|++++++        +|....++.++|.++...++.+++ ...++++++.....
T Consensus       536 a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          536 AAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            9999999999999999999999999874        577788999999999888876666 67778887777654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.66  E-value=1.1e-15  Score=154.50  Aligned_cols=199  Identities=14%  Similarity=0.035  Sum_probs=158.4

Q ss_pred             HhhCChHHHHHHHHHHHHhh-hhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010446          173 VYIGDLKFVQSLLDMMSGIV-DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM  251 (510)
Q Consensus       173 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  251 (510)
                      ...|++++|+..+++++... .......|....++..+|.++...|++++|+..|+++++..        |....+++++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--------GWRWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------cchHHHHHHH
Confidence            78999999999999987211 11112234555668999999999999999999999999863        4447789999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 010446          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (510)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (510)
                      |.++...|++++|+..|++++++        .|....++.++|.++...|++++ +..|++++++        +|....+
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a  536 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISA  536 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHH
Confidence            99999999999999999999998        56668899999999999999999 9999999986        4555678


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 010446          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG-RELLEECLLITEKY  406 (510)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  406 (510)
                      +.++|.++...|++++|+..|++++++          .+....++.++|.++...++.+++ ..-+++++......
T Consensus       537 ~~~lg~~~~~~g~~~~A~~~~~~al~l----------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          537 AFGLARARSAEGDRVGAVRTLDEVPPT----------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCTT----------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhccc----------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            999999999999999999999998876          333456778999999888876665 66777777666554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.66  E-value=7.6e-16  Score=123.90  Aligned_cols=147  Identities=12%  Similarity=0.007  Sum_probs=121.6

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010446          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (510)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (510)
                      .||.++...|++++|+..++++...       .|.....++.+|.+|...|++++|+.+|++++++        +|....
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~-------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~   66 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS-------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK   66 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS-------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            4788889999999999999987644       3677777899999999999999999999999987        355578


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHcCCCC
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV-FSRILKIYTKVYGEND  325 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~  325 (510)
                      ++..+|.+|...|++++|+..|++++++        .|....++.++|.+|...|++++|... +++++++        +
T Consensus        67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~  130 (150)
T 4ga2_A           67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F  130 (150)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence            8999999999999999999999999998        566788999999999999999887765 5899986        2


Q ss_pred             hHHHHHHHHHHHHHHHCCC
Q 010446          326 GRVGMAMCSLAHAKCANGN  344 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~  344 (510)
                      |....++...+.++...|+
T Consensus       131 P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHHHHHHHHHHHHTCCC
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            4444567777888887775

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.66  E-value=1.4e-14  Score=118.29  Aligned_cols=157  Identities=15%  Similarity=0.135  Sum_probs=137.2

Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      .+..+.++..+|.++...|++++|+.++++++++.+...  +....+.++..+|.++...|++++|+.++++++.+.+..
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            346678899999999999999999999999999987753  345556789999999999999999999999999998765


Q ss_pred             cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (510)
                        .+.+....++.++|.++...|++++|+.++++++......    .++.....++..+|.++...|++++|+.++++++
T Consensus        83 --~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           83 --KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             --CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence              2345567889999999999999999999999999998763    4556677888999999999999999999999999


Q ss_pred             HHHHH
Q 010446          401 LITEK  405 (510)
Q Consensus       401 ~~~~~  405 (510)
                      .+.++
T Consensus       157 ~~~~~  161 (164)
T 3ro3_A          157 EISRE  161 (164)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            88754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.66  E-value=1e-14  Score=119.13  Aligned_cols=157  Identities=18%  Similarity=0.174  Sum_probs=137.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (510)
                      .+..+.++..+|.++...|++++|+.+++++++..+..    .+......++..+|.++...|++++|+.++++++.+..
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999998863    45566677889999999999999999999999999987


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010446          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (510)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  484 (510)
                      ..  .+.+....++..+|.++...|++++|+.++++++.+....  .+.+....++..+|.++...|++++|..++++++
T Consensus        81 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           81 QL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            65  2445567789999999999999999999999999987764  3456677889999999999999999999999999


Q ss_pred             HHHHH
Q 010446          485 YIREI  489 (510)
Q Consensus       485 ~~~~~  489 (510)
                      ++.++
T Consensus       157 ~~~~~  161 (164)
T 3ro3_A          157 EISRE  161 (164)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            98754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.65  E-value=4.6e-15  Score=139.45  Aligned_cols=123  Identities=9%  Similarity=0.124  Sum_probs=118.3

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 010446          214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  293 (510)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  293 (510)
                      ...|+|++|+.++++++++.++.++++||.++.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++..+++|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 010446          294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA  336 (510)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  336 (510)
                      |.+|..+|++++|+.++++|+++.+..+|++||.+..+..+|.
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999999999999999999999999999988877764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=1.1e-15  Score=122.92  Aligned_cols=147  Identities=15%  Similarity=0.097  Sum_probs=121.9

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 010446          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (510)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (510)
                      .||.++...|++++|+..+++++..        .|.....++.+|.+|...|++++|+.++++++++        .|...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            4788999999999999999998753        4666778899999999999999999999999998        56778


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHhhccCC
Q 010446          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL-YKKALRVIKDSNYMS  366 (510)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~  366 (510)
                      .++..+|.+|...|++++|+..|++++++        +|....++.++|.++...|++++|... +++++++       .
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------~  130 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------F  130 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-------S
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------C
Confidence            99999999999999999999999999986        355567899999999999999887665 6899988       4


Q ss_pred             CCChHHHHHHHHHHHHHHHcCC
Q 010446          367 LDDSIMENMRIDLAELLHIVGR  388 (510)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~  388 (510)
                      |+++.   ++...+.++...|+
T Consensus       131 P~~~~---~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPA---VYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHH---HHHHHHHHHHTCCC
T ss_pred             cCCHH---HHHHHHHHHHHhCc
Confidence            55544   45667888887775

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.65  E-value=2.6e-14  Score=122.08  Aligned_cols=165  Identities=16%  Similarity=0.174  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH----------------HHHHHHhhhcHHHHHHH
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH----------------MGSMYSTLENYEKSMLV  225 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~  225 (510)
                      +..+...|..+...|++++|+..|++++...       |....+++.                +|.++...|++++|+..
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4566788999999999999999999998875       555666777                99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh--
Q 010446          226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA--  303 (510)
Q Consensus       226 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--  303 (510)
                      |++++++        +|....++..+|.++...|++++|+.+|++++++        .|....++.++|.+|...|+.  
T Consensus        77 ~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           77 YKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence            9999986        3555788999999999999999999999999998        567788999999999877653  


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ..+...+.+++.         .+....++..+|.++...|++++|+.+|++++++
T Consensus       141 ~~~~~~~~~~~~---------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          141 KKLETDYKKLSS---------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHC---C---------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhC---------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344555554432         2223346778899999999999999999999987

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=1.9e-14  Score=122.87  Aligned_cols=165  Identities=11%  Similarity=0.135  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHhhCChHHH
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDI----------------IALGYVYIGDLKFV  181 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A  181 (510)
                      ...++..|..+...|++++|+..|++++..          .|..+.++..                +|.++...|++++|
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A   73 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL----------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA   73 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHH
Confidence            345778899999999999999999999998          8888888888                99999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCH
Q 010446          182 QSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA  261 (510)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  261 (510)
                      +..+++++++.       |....++..+|.++...|++++|+..|++++++        +|....++.++|.+|...|+.
T Consensus        74 ~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           74 YLFYKELLQKA-------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHH
Confidence            99999999875       444566899999999999999999999999987        355577899999999877654


Q ss_pred             --HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          262 --KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       262 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                        ..+...+.+++.         .+....+++.+|.++...|++++|+.+|++++++
T Consensus       139 ~~~~~~~~~~~~~~---------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          139 EKKKLETDYKKLSS---------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHC---C---------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhC---------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence              344555554431         2223346778899999999999999999999985

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.62  E-value=2e-13  Score=140.41  Aligned_cols=295  Identities=14%  Similarity=0.077  Sum_probs=171.0

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (510)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (510)
                      ..|-+.+.+.+|...+-+.+..+.+..... .....+.+|..+|.++...|++++|+..|.++         ++   ...
T Consensus      1070 ~IYkKa~~~~~A~~VLie~i~nldrAiE~A-ervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD---~sa 1136 (1630)
T 1xi4_A         1070 AIFRKFDVNTSAVQVLIEHIGNLDRAYEFA-ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DD---PSS 1136 (1630)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---------CC---hHH
Confidence            344445555555444443332222211000 02244788999999999999999999999774         11   233


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                      +..+|.++...|++++|+++|..+.+..+.      +   .+...+|.+|.+.+++++.. .|.+            .+.
T Consensus      1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e------~---~Idt~LafaYAKl~rleele-~fI~------------~~n 1194 (1630)
T 1xi4_A         1137 YMEVVQAANTSGNWEELVKYLQMARKKARE------S---YVETELIFALAKTNRLAELE-EFIN------------GPN 1194 (1630)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhccc------c---cccHHHHHHHHhhcCHHHHH-HHHh------------CCC
Confidence            778999999999999999999988765311      0   01113666666666665322 2210            111


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--hh-
Q 010446          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK--DS-  362 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~-  362 (510)
                       ...+..+|..+...|+|++|..+|.++                ..|..++.++.+.|++++|++.++++.....  +. 
T Consensus      1195 -~ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~ 1257 (1630)
T 1xi4_A         1195 -NAHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 1257 (1630)
T ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHH
Confidence             123445666666666666666666654                1345566666666666666666665532210  00 


Q ss_pred             ------------ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--c
Q 010446          363 ------------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--S  428 (510)
Q Consensus       363 ------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~  428 (510)
                                  ...+.........+..++..|...|.+++|+.++++++.+-        +.....+..+|.+|.+  .
T Consensus      1258 ~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCH
Confidence                        00000000011233567778888888888888888887642        3344556566666654  4


Q ss_pred             cCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                      ++..+++++|...+.+-+-.   .--.....|..+..+|.+-|+++.|.....+.
T Consensus      1330 eklmEhlk~f~~rini~k~~---r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A         1330 QKMREHLELFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred             HHHHHHHHHHHHhcccchHh---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence            56666777776655531100   01133456788888999999999998544433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.62  E-value=1e-14  Score=137.61  Aligned_cols=133  Identities=14%  Similarity=0.042  Sum_probs=124.1

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010446          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (510)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (510)
                      ..-+..+|++++|+..+++++++..+.  ++++++.++.++.++|.+|..+|++++|+.++++++.+.++.+|++||.++
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~--lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSER--LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCC--CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCc--CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            334567899999999999999887664  789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhc
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  470 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  470 (510)
                      ..+++||.+|..+|++++|+.+|++|+++.+..+|++||.+..++.+|+.+...+
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.62  E-value=1.1e-14  Score=137.39  Aligned_cols=132  Identities=12%  Similarity=0.079  Sum_probs=125.6

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 010446          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  289 (510)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (510)
                      ..-+..+|++++|+..+++++++..+.++++++..+.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 010446          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  341 (510)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  341 (510)
                      +++||.+|..+|++++|+.++++|+++.+..+|++||.+..++.+|+.+...
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.59  E-value=1.5e-15  Score=139.90  Aligned_cols=273  Identities=12%  Similarity=-0.014  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .+...|..+...|++++|++.|.++               ..+..+..++..+...|++++|+.+++.+.+..       
T Consensus        34 vWs~La~A~l~~g~~~eAIdsfika---------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~-------   91 (449)
T 1b89_A           34 VWSQLAKAQLQKGMVKEAIDSYIKA---------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-------   91 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcC---------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------
Confidence            3566888899999999999999753               234477788888888999999999888877632       


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      +. ..+...++.+|.+.|++.++.++++.             |. ..++..+|..+...|+|++|..+|.++        
T Consensus        92 ~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------  148 (449)
T 1b89_A           92 RE-SYVETELIFALAKTNRLAELEEFING-------------PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------  148 (449)
T ss_dssp             ------------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT--------
T ss_pred             cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence            11 23367788899999999998877742             21 238899999999999999999999865        


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                              ..+..+|.++.++|++++|++.++++.          +   ..+|..++.++...|+++.|..+....    
T Consensus       149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L----  203 (449)
T 1b89_A          149 --------SNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLHI----  203 (449)
T ss_dssp             --------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTTT----
T ss_pred             --------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHHH----
Confidence                    357789999999999999999999882          1   256788889999999999996655431    


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHHHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAERL  437 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~  437 (510)
                            . .++..   ...++..|.+.|++++|+.++++++.+-        +....++..+|.+|.+  .++..++++.
T Consensus       204 ------~-~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le--------~ah~~~ftel~il~~ky~p~k~~ehl~~  265 (449)
T 1b89_A          204 ------V-VHADE---LEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMREHLEL  265 (449)
T ss_dssp             ------T-TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST--------TCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------H-hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc--------HHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence                  1 12222   2458889999999999999999988642        3345667777777764  4566677777


Q ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                      |...+.+-+-.-   --.....|..+.-+|...++++.|.....+.
T Consensus       266 ~~~~ini~k~~~---~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          266 FWSRVNIPKVLR---AAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             HSTTSCHHHHHH---HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhcCcHHHH---HHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence            665554422100   0023456788899999999999998765443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.57  E-value=9e-14  Score=107.83  Aligned_cols=117  Identities=13%  Similarity=0.133  Sum_probs=102.4

Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      -+|..+..+.++|..++..|++++|+..|++++++        +|....++.++|.+|..+|++++|+..+++++++   
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---   76 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---   76 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence            45888999999999999999999999999999986        3555788999999999999999999999999998   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 010446          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (510)
                           .|....++.++|.++..+|++++|+..|++++++        +|....++.+++.+
T Consensus        77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~  124 (126)
T 4gco_A           77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNC  124 (126)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred             -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHh
Confidence                 5667889999999999999999999999999996        34444566666654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.56  E-value=1.4e-13  Score=106.67  Aligned_cols=116  Identities=13%  Similarity=0.050  Sum_probs=101.8

Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      +|..+..+.++|..|+..|+|++|+..|++++++        .|....++.++|.+|..+|++++|+..+++++++    
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL----   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence            5888999999999999999999999999999987        5667889999999999999999999999999986    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 010446          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL  382 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~  382 (510)
                          +|....++.++|.++...|++++|+..|++++++       .|++..   ++..++.+
T Consensus        77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-------~P~~~~---a~~~l~~~  124 (126)
T 4gco_A           77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV-------DPSNEE---AREGVRNC  124 (126)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHH---HHHHHHHH
T ss_pred             ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CcCCHH---HHHHHHHh
Confidence                3555678999999999999999999999999998       444443   44556654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.55  E-value=1.2e-12  Score=117.00  Aligned_cols=252  Identities=6%  Similarity=-0.113  Sum_probs=198.4

Q ss_pred             HHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhC--ChHHHHHHHHHHHHhhh
Q 010446          117 QLLELFNEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG--DLKFVQSLLDMMSGIVD  193 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~  193 (510)
                      +...++.........|.+ ++|+..+.+++.+          .|+...+++..+.++...|  ++++++..++.++... 
T Consensus        31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~----------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-   99 (306)
T 3dra_A           31 DYKQIMGLLLALMKAEEYSERALHITELGINE----------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-   99 (306)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-
Confidence            344456666666777777 5899999999999          9999999999999999999  9999999999998764 


Q ss_pred             hcCCCchHHHHHHHHHHHHH----Hhh---hcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHH--HH
Q 010446          194 SLKDDEPLLDAILLHMGSMY----STL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK--KA  264 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A  264 (510)
                            |....+++..+.++    ...   +++++++.++.++++.        +|....++...+.+....|.++  ++
T Consensus       100 ------Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~E  165 (306)
T 3dra_A          100 ------EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKE  165 (306)
T ss_dssp             ------TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred             ------cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHH
Confidence                  44445577777777    555   7899999999999985        3566788999999999999998  99


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 010446          265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (510)
Q Consensus       265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (510)
                      ++++.++++.        ++....+++..+.+....|+      ++++++++.+++..        +|....+++.++.+
T Consensus       166 L~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~l  229 (306)
T 3dra_A          166 LSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGI  229 (306)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHH
Confidence            9999999987        66778899999999999887      89999999999885        46666889999999


Q ss_pred             HHHCCCHHH-HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010446          339 KCANGNAEE-AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (510)
Q Consensus       339 ~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (510)
                      +...|+..+ ...+..+++...       ...+....++..++.++.+.|+.++|+++|+.+.+.       .+|.....
T Consensus       230 l~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-------~Dpir~~y  295 (306)
T 3dra_A          230 HERFDRSITQLEEFSLQFVDLE-------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-------YNPIRSNF  295 (306)
T ss_dssp             HHHTTCCGGGGHHHHHTTEEGG-------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCGGGHHH
T ss_pred             HHhcCCChHHHHHHHHHHHhcc-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------cChHHHHH
Confidence            999998554 334555544431       011222346688999999999999999999997652       24555555


Q ss_pred             HHHHHH
Q 010446          418 LLNLAA  423 (510)
Q Consensus       418 ~~~la~  423 (510)
                      +...+.
T Consensus       296 W~~~~~  301 (306)
T 3dra_A          296 WDYQIS  301 (306)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.55  E-value=7.3e-15  Score=135.34  Aligned_cols=258  Identities=15%  Similarity=0.056  Sum_probs=110.6

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (510)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (510)
                      -..|+.++|.+++++.               +.+.+|..+|.++...|++++|+..|.++.           + ...+..
T Consensus        14 ~~~~~ld~A~~fae~~---------------~~~~vWs~La~A~l~~g~~~eAIdsfika~-----------D-~~~y~~   66 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC---------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----------D-PSSYME   66 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC---------------CChHHHHHHHHHHHHcCCHHHHHHHHHcCC-----------C-HHHHHH
Confidence            3567788888888875               123589999999999999999999997631           1 124678


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 010446          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (510)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (510)
                      ++..+...|++++|+.+++.+.+..        +. ..+...++.+|.+.|++.+++++++.             |. ..
T Consensus        67 V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~  123 (449)
T 1b89_A           67 VVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-------------PN-NA  123 (449)
T ss_dssp             ---------------------------------------------------CHHHHTTTTTC-------------C----
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HH
Confidence            8888999999999999999887631        11 34566789999999999999877741             22 24


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010446          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (510)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (510)
                      ++..+|..+...|++++|..+|.++                ..+..+|.++.+.|++++|++.++++..           
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~-----------  176 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANS-----------  176 (449)
T ss_dssp             -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTC-----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCC-----------
Confidence            8999999999999999999999966                2467899999999999999999999821           


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (510)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (510)
                          ..+|..++.++...|+++.|..+.....         .+|+.   ...++.+|.+.|++++|+.++++++.+    
T Consensus       177 ----~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l----  236 (449)
T 1b89_A          177 ----TRTWKEVCFACVDGKEFRLAQMCGLHIV---------VHADE---LEELINYYQDRGYFEELITMLEAALGL----  236 (449)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHTTTTTT---------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred             ----chhHHHHHHHHHHcCcHHHHHHHHHHHH---------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC----
Confidence                2466788999999999999966554311         34444   335888999999999999999999873    


Q ss_pred             hCCCChhhHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHH
Q 010446          449 VGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~  487 (510)
                          .+....++..+|.+|.+  .|+..++++.|...+.+-
T Consensus       237 ----e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~  273 (449)
T 1b89_A          237 ----ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP  273 (449)
T ss_dssp             ----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHH
T ss_pred             ----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCc
Confidence                24455667777777764  455566666665544443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.55  E-value=1.8e-13  Score=117.16  Aligned_cols=176  Identities=13%  Similarity=0.113  Sum_probs=143.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH
Q 010446          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS  214 (510)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (510)
                      .+|+.+|+++.+.            ..+.+++.+|.+|...+++++|+.+|+++...      .+   ..+++.+|.+|.
T Consensus         3 ~eA~~~~~~aa~~------------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~---~~a~~~lg~~y~   61 (212)
T 3rjv_A            3 TEPGSQYQQQAEA------------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GD---GDALALLAQLKI   61 (212)
T ss_dssp             -CTTHHHHHHHHT------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TC---HHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHC------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CC---HHHHHHHHHHHH
Confidence            3567777777642            45778999999999999999999999998753      12   345889999999


Q ss_pred             hhh----cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHhcCCCCc-c
Q 010446          215 TLE----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESA-D  285 (510)
Q Consensus       215 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~-~  285 (510)
                      . +    ++++|+.+|+++.+.          ....+++++|.+|..    .+++++|+.+|+++.+.       .+. .
T Consensus        62 ~-~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~~~  123 (212)
T 3rjv_A           62 R-NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-------SESDA  123 (212)
T ss_dssp             S-STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-------TTSHH
T ss_pred             c-CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-------CCCcc
Confidence            8 7    999999999999652          235688999999998    89999999999999864       111 3


Q ss_pred             hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHH
Q 010446          286 LVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-G-----NAEEAVELYKKA  355 (510)
Q Consensus       286 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a  355 (510)
                      ...++++||.+|..    .+++++|+.+|+++.+.      +.+   ..++.+||.+|... |     ++++|+.+|+++
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            47899999999999    88999999999999873      122   24788999999864 3     899999999999


Q ss_pred             HHH
Q 010446          356 LRV  358 (510)
Q Consensus       356 l~~  358 (510)
                      .+.
T Consensus       195 ~~~  197 (212)
T 3rjv_A          195 CLE  197 (212)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            886

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.54  E-value=3e-13  Score=121.72  Aligned_cols=165  Identities=12%  Similarity=0.035  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ..++..+..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..++++....      
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------  181 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQL----------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------  181 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------
Confidence            44778899999999999999999999998          88888999999999999999999999999886553      


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                       |.........+..+...++.++|+..+++++..        .|....++.++|.++...|++++|+..++++++.    
T Consensus       182 -p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~----  248 (287)
T 3qou_A          182 -QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX----  248 (287)
T ss_dssp             -CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             -cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence             223334566777788899999999999999886        3556778999999999999999999999999997    


Q ss_pred             cCCCCcch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          279 RGTESADL--VLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       279 ~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                          +|..  ..++.+++.++...|+.++|...|++++..
T Consensus       249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          249 ----DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             ----CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ----ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence                3444  778999999999999999999999999874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=4e-13  Score=114.94  Aligned_cols=177  Identities=14%  Similarity=0.022  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 010446          220 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  299 (510)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  299 (510)
                      .+|+.+|+++.+.          ....+++.+|.+|...+++++|+.+|+++.+.          ....+++++|.+|..
T Consensus         3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR   62 (212)
T ss_dssp             -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence            3577788887753          23578899999999999999999999999764          236789999999998


Q ss_pred             cC----ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 010446          300 EG----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (510)
Q Consensus       300 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (510)
                       +    ++++|+.+|+++.+.       .   ...++.++|.+|..    .+++++|+.+|+++.+.       ++ ...
T Consensus        63 -~g~~~~~~~A~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~-~~~  123 (212)
T 3rjv_A           63 -NPQQADYPQARQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-------SE-SDA  123 (212)
T ss_dssp             -STTSCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-------TT-SHH
T ss_pred             -CCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-------CC-Ccc
Confidence             7    899999999999652       2   34678899999988    89999999999998865       21 113


Q ss_pred             HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc-c-----CHHHHHHHHHHH
Q 010446          372 MENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-K-----NFVEAERLLRIC  441 (510)
Q Consensus       372 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a  441 (510)
                      ...++.+||.+|..    .+++++|+.+|+++.+.         +....++.+||.+|... |     ++++|+.+|+++
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            35677999999999    88999999999999764         11234788999999864 3     899999999999


Q ss_pred             HHH
Q 010446          442 LDI  444 (510)
Q Consensus       442 l~~  444 (510)
                      .+.
T Consensus       195 ~~~  197 (212)
T 3rjv_A          195 CLE  197 (212)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            884

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.54  E-value=2.9e-13  Score=121.75  Aligned_cols=169  Identities=15%  Similarity=0.033  Sum_probs=143.8

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (510)
                      |.....+..+|..+...|++++|+..|++++..        +|....++..+|.++...|++++|+..+++++..     
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----  180 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----  180 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence            445677889999999999999999999999986        3555678999999999999999999999998765     


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                        .++.   .......+..+...++.++|+..+++++..        .|....++..+|.+|...|++++|+..|++++.
T Consensus       181 --~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~  247 (287)
T 3qou_A          181 --DQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLR  247 (287)
T ss_dssp             --GCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --hcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence              2322   234456677788889999999999999885        466678899999999999999999999999998


Q ss_pred             HHHHHhCCCChhh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          444 IMTKTVGPDDQSI--SFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       444 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      .        +|..  ..++..++.++...|+.++|...|++++..
T Consensus       248 ~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          248 X--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             H--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             c--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            5        3444  678899999999999999999999999874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.53  E-value=1e-13  Score=114.92  Aligned_cols=162  Identities=11%  Similarity=0.090  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ++..+..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++...    + .+
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~~   73 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDE----------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY----Q-DN   73 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHH----------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-CH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-Ch
Confidence            667888999999999999999999988          88889999999999999999999999999876653    2 33


Q ss_pred             HHHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          201 LLDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       201 ~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      ..   ...++.+. ...++..+|+..++++++.        .|....++..+|.++...|++++|+..++++++.     
T Consensus        74 ~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----  137 (176)
T 2r5s_A           74 SY---KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV-----  137 (176)
T ss_dssp             HH---HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----
T ss_pred             HH---HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----
Confidence            32   23333332 2334455688999999875        3555678999999999999999999999999876     


Q ss_pred             CCCCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          280 GTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       280 ~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                         .|.  ...++..+|.++...|+.++|+..|++++..
T Consensus       138 ---~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 ---NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             ---CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             ---CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence               332  2568899999999999999999999998864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.53  E-value=1.3e-13  Score=114.35  Aligned_cols=165  Identities=19%  Similarity=0.074  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010446          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (510)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (510)
                      ...+..+|..+...|++++|+..++++++.        +|....++..+|.++...|++++|+..+++++..       .
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------~   70 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------Y   70 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------G
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------c
Confidence            456778999999999999999999999986        3556688999999999999999999999998765       2


Q ss_pred             CCChHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010446          367 LDDSIMENMRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       367 ~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (510)
                      | .+..   ...++.+. ...++..+|+..+++++..        .|....++..+|.++...|++++|+..|++++.. 
T Consensus        71 p-~~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-  137 (176)
T 2r5s_A           71 Q-DNSY---KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV-  137 (176)
T ss_dssp             C-CHHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             C-ChHH---HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-
Confidence            3 3322   22233332 2334455689999998875        3556688999999999999999999999999873 


Q ss_pred             HHHhCCCChh--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          446 TKTVGPDDQS--ISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       446 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                             +|.  ...++..++.++..+|+.++|...|++++..
T Consensus       138 -------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 -------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             -------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             -------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence                   333  2457899999999999999999999998864

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.52  E-value=9.1e-12  Score=111.29  Aligned_cols=239  Identities=9%  Similarity=-0.047  Sum_probs=189.6

Q ss_pred             HhhCCh-HHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010446          173 VYIGDL-KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (510)
Q Consensus       173 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (510)
                      ...|.+ ++|+..+.+++.+.       |....+++..+.++...|  ++++++.++.+++..        +|....+++
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~  107 (306)
T 3dra_A           43 MKAEEYSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWN  107 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHH
Confidence            344555 68999999999875       666777999999999999  999999999999976        344556777


Q ss_pred             HHHHHH----hhc---CCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHHH
Q 010446          250 GMAKVL----GSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--DAESVFSRILKIYTKV  320 (510)
Q Consensus       250 ~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~  320 (510)
                      ..+.++    ...   +++++++.++.++++.        +|....++...+.++...|+++  +++.++.++++.    
T Consensus       108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----  175 (306)
T 3dra_A          108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----  175 (306)
T ss_dssp             HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----
Confidence            777777    666   8999999999999987        6777899999999999999999  999999999985    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHH-HH
Q 010446          321 YGENDGRVGMAMCSLAHAKCANGN------AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE-GR  393 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~  393 (510)
                          ++....++...+.+....|+      ++++++++.+++..       .+++   ..+++.++.++...|+..+ ..
T Consensus       176 ----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-------~p~n---~SaW~y~~~ll~~~~~~~~~~~  241 (306)
T 3dra_A          176 ----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-------CPQN---PSTWNYLLGIHERFDRSITQLE  241 (306)
T ss_dssp             ----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-------CSSC---HHHHHHHHHHHHHTTCCGGGGH
T ss_pred             ----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-------CCCC---ccHHHHHHHHHHhcCCChHHHH
Confidence                56666889999999999887      99999999999987       3333   4567889999999998655 44


Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHH
Q 010446          394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (510)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (510)
                      .++++++...     ...+....++..++.+|.+.|+.++|+++|+.+.+       .-+|.....+...+
T Consensus       242 ~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~-------~~Dpir~~yW~~~~  300 (306)
T 3dra_A          242 EFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS-------KYNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTCGGGHHHHHHHH
T ss_pred             HHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-------ccChHHHHHHHHHH
Confidence            4555554421     11345567889999999999999999999999875       22566555555444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.51  E-value=1.7e-13  Score=119.40  Aligned_cols=207  Identities=12%  Similarity=-0.018  Sum_probs=163.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM-------AKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                      ++..|..+ ..+++..|...|.+++.+        +|..+.+|.++       +.++...+++.+++..+++++.+....
T Consensus        10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~   80 (282)
T 4f3v_A           10 LFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMST   80 (282)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGG
T ss_pred             HHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence            45556665 689999999999999987        47778999999       899999999999999999988764333


Q ss_pred             cCCCCc-------------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCH
Q 010446          279 RGTESA-------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (510)
Q Consensus       279 ~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (510)
                      .+....             ........++.++...|++++|.+.|...+.        ..|... ..+.+|.++...|++
T Consensus        81 l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~~~r~  151 (282)
T 4f3v_A           81 LNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGAAERW  151 (282)
T ss_dssp             GCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHHTTCH
T ss_pred             hhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHHcCCH
Confidence            221111             1134456688999999999999999987764        345555 888999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHH
Q 010446          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAAS  424 (510)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~  424 (510)
                      ++|+.+++++...        +++.....+++.+|.++...|++++|+.+|++++.      ++..|. ...+...+|.+
T Consensus       152 ~dA~~~l~~a~~~--------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~gla  217 (282)
T 4f3v_A          152 TDVIDQVKSAGKW--------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMA  217 (282)
T ss_dssp             HHHHHHHTTGGGC--------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc--------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHH
Confidence            9999999865432        22222345789999999999999999999999863      232244 66788999999


Q ss_pred             HHhccCHHHHHHHHHHHHHH
Q 010446          425 YSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~  444 (510)
                      +..+|+.++|...|++++..
T Consensus       218 L~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          218 RRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhc
Confidence            99999999999999999985

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.51  E-value=7.5e-13  Score=115.30  Aligned_cols=211  Identities=14%  Similarity=0.007  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHHHhhCChHHHHHHHHH
Q 010446          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII-------ALGYVYIGDLKFVQSLLDM  187 (510)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~  187 (510)
                      ...+..++..+..+ ..+++..|.+.|.+++++          .|..+++|..+       +.++...+++.+++..+++
T Consensus         4 ~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~----------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~   72 (282)
T 4f3v_A            4 TDRLASLFESAVSM-LPMSEARSLDLFTEITNY----------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG   72 (282)
T ss_dssp             HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHH
T ss_pred             hHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh----------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHH
Confidence            34566677777776 689999999999999999          99999999999       8899999999999888888


Q ss_pred             HHHhhhhcCCCc----h----------HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010446          188 MSGIVDSLKDDE----P----------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK  253 (510)
Q Consensus       188 ~~~~~~~~~~~~----~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  253 (510)
                      .+.+....-...    +          ....+...++.++...|+|++|.+.|...+.        ..|... ..+.+|.
T Consensus        73 ~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~  143 (282)
T 4f3v_A           73 SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAV  143 (282)
T ss_dssp             TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHH
T ss_pred             HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHH
Confidence            777432210000    0          1234456788999999999999999987754        235555 8899999


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHH
Q 010446          254 VLGSIGRAKKAVEIYHRVITILELNRGTESAD-LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMA  331 (510)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~  331 (510)
                      ++...+++++|+.+++++...       .++. ...+++.+|.++..+|++++|+.+|++++.      ++..|. ...+
T Consensus       144 l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da  210 (282)
T 4f3v_A          144 VYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAI  210 (282)
T ss_dssp             HHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHH
T ss_pred             HHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHH
Confidence            999999999999999866432       1222 245889999999999999999999999874      233244 6778


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          332 MCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ..++|.++..+|+.++|...|++++..
T Consensus       211 ~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          211 AWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            899999999999999999999999987

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.50  E-value=1.2e-12  Score=101.68  Aligned_cols=108  Identities=11%  Similarity=0.103  Sum_probs=96.7

Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      ++.+.++.++|..++..|+|++|+.+|++++++        .|....++.++|.+|..+|++++|+..+++++++.... 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            356778999999999999999999999999998        56678899999999999999999999999999987654 


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ....+..+.++.++|.++...|++++|+++|++++..
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2344567789999999999999999999999999986

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.50  E-value=3.5e-13  Score=134.03  Aligned_cols=153  Identities=11%  Similarity=0.022  Sum_probs=120.5

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHH
Q 010446          131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG  210 (510)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (510)
                      .|++++|+..++++++.          .|..+.++..+|.++...|++++|+..++++++..       |....++..+|
T Consensus         2 ~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg   64 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH----------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLG   64 (568)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence            47899999999999887          67778899999999999999999999999998764       34456689999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 010446          211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  290 (510)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  290 (510)
                      .++...|++++|+.+++++++..        |....++.++|.+|...|++++|+.+++++++.        .|....++
T Consensus        65 ~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~  128 (568)
T 2vsy_A           65 RVRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYIT  128 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            99999999999999999999862        444678999999999999999999999999987        45567889


Q ss_pred             HHHHHHHHHc---CChHHHHHHHHHHHHH
Q 010446          291 FSLGSLFIKE---GKAVDAESVFSRILKI  316 (510)
Q Consensus       291 ~~la~~~~~~---g~~~~A~~~~~~al~~  316 (510)
                      .++|.++...   |++++|...++++++.
T Consensus       129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999999999   9999999999999986

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.49  E-value=2.1e-13  Score=108.85  Aligned_cols=102  Identities=9%  Similarity=0.069  Sum_probs=94.0

Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      +|....+++.+|.++...|++++|+.+|++++.+        .|....++.++|.++...|++++|+..|++++.+    
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            5778889999999999999999999999999998        5777889999999999999999999999999996    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                          .|....++.++|.+|...|++++|+..|++++++
T Consensus       100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                2444568899999999999999999999999998

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.48  E-value=1.1e-12  Score=130.51  Aligned_cols=153  Identities=12%  Similarity=0.093  Sum_probs=118.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 010446          258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  337 (510)
Q Consensus       258 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  337 (510)
                      .|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.        .|....++.++|.
T Consensus         2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~   65 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR   65 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            47899999999999886        4566789999999999999999999999999984        4555678999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010446          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (510)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (510)
                      ++...|++++|+.+++++++.       .++.   ..++.++|.++...|++++|+..++++++.        .|....+
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~-------~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  127 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDA-------APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYI  127 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhc-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence            999999999999999999987       3333   456789999999999999999999999986        3445678


Q ss_pred             HHHHHHHHHhc---cCHHHHHHHHHHHHHH
Q 010446          418 LLNLAASYSRS---KNFVEAERLLRICLDI  444 (510)
Q Consensus       418 ~~~la~~~~~~---g~~~~A~~~~~~al~~  444 (510)
                      +..+|.++...   |++++|.+.++++++.
T Consensus       128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            89999999999   9999999999999985

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.47  E-value=2e-12  Score=100.41  Aligned_cols=108  Identities=13%  Similarity=0.101  Sum_probs=95.8

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (510)
                      ++.+.++.++|..+...|++++|+.+|++++++        +|....++.++|.+|..+|++++|+..+++++++.+.. 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            345778899999999999999999999999986        35556789999999999999999999999999998763 


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                        .......+.++.++|.++...|++++|+++|++++..
T Consensus        76 --~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 --RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence              4455667789999999999999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.47  E-value=2.5e-13  Score=125.09  Aligned_cols=162  Identities=10%  Similarity=0.083  Sum_probs=135.0

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC--------CchH
Q 010446          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--------DEPL  201 (510)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~  201 (510)
                      ..+++++|+..++++++.          .+..+.++..+|.++...|++++|+..|++++.+......        ..+.
T Consensus       125 ~L~~~~~A~~~~~~a~~~----------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~  194 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE----------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL  194 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHH----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence            345677788778777766          7778899999999999999999999999999988633110        0123


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (510)
                      ...++.++|.++...|++++|+.+|++++++        .|....+++++|.+|...|++++|+..|++++++       
T Consensus       195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------  259 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-------  259 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence            3577999999999999999999999999987        2455788999999999999999999999999998       


Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHH
Q 010446          282 ESADLVLPLFSLGSLFIKEGKAVDA-ESVFSRILKIY  317 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~  317 (510)
                       .|....++..++.++...|++++| ...|++++...
T Consensus       260 -~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          260 -YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             -CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             556678999999999999999999 45677776544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.46  E-value=3.4e-12  Score=101.83  Aligned_cols=104  Identities=11%  Similarity=0.182  Sum_probs=95.2

Q ss_pred             CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (510)
                      .-.|....+++.+|..+...|++++|+..|++++.+        +|....++.++|.++...|++++|+..|++++++  
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--   99 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--   99 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence            445888888999999999999999999999999986        3556778999999999999999999999999998  


Q ss_pred             HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                            .|....+++++|.+|..+|++++|+..|++++++
T Consensus       100 ------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          100 ------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             ------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                  5667789999999999999999999999999997

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.45  E-value=4.5e-13  Score=123.32  Aligned_cols=164  Identities=16%  Similarity=0.171  Sum_probs=133.0

Q ss_pred             hhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC-------CChhHHH
Q 010446          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVT  246 (510)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~  246 (510)
                      ..+++++|+..++++....       |..+.++..+|.++...|++++|+..|++++.+.......       ..+....
T Consensus       125 ~L~~~~~A~~~~~~a~~~~-------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  197 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEK-------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA  197 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence            4566777777776655443       6777889999999999999999999999999875321000       0122368


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (510)
                      ++.++|.+|...|++++|+.++++++++        .|....+++++|.+|..+|++++|+..|++++++        .|
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P  261 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP  261 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence            8999999999999999999999999998        4667889999999999999999999999999986        34


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHH
Q 010446          327 RVGMAMCSLAHAKCANGNAEEA-VELYKKALRVIK  360 (510)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~  360 (510)
                      ....++.+++.++...|++++| ...|++++....
T Consensus       262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4456889999999999999999 557777766544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.41  E-value=2e-11  Score=95.78  Aligned_cols=130  Identities=21%  Similarity=0.394  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010446          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (510)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (510)
                      +++.+|.++...|++++|+.+++++++..        +....++..+|.++...|++++|+.++++++..        .|
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~   66 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP   66 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CC
Confidence            47889999999999999999999998752        333567889999999999999999999999876        34


Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      .....+..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|..++++++..
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            456788899999999999999999999998752        333467788999999999999999999999876

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.41  E-value=3e-10  Score=101.99  Aligned_cols=235  Identities=9%  Similarity=-0.006  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC----------hHHHHHHH
Q 010446          117 QLLELFNEVKSMIMMGNKN-DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD----------LKFVQSLL  185 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~  185 (510)
                      .+..+..........|+++ +|+.++.+++.+          .|....+++..+.+....|.          +++++.++
T Consensus        28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~----------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~   97 (331)
T 3dss_A           28 LYQSATQAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFL   97 (331)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence            3444555666667888887 789999999988          88888999999998887765          56777777


Q ss_pred             HHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhc--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCC-HH
Q 010446          186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN--YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AK  262 (510)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~  262 (510)
                      +.++...       |....+++..+.++...|+  +++++.++.++++.        +|....++...+.+....|. ++
T Consensus        98 ~~~L~~~-------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~  162 (331)
T 3dss_A           98 ESCLRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPA  162 (331)
T ss_dssp             HHHHHHC-------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHhC-------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHH
Confidence            7776653       5556678999999998884  89999999999986        35667889999999999998 69


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446          263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------------GKAVDAESVFSRILKIYTKVYGENDGRV  328 (510)
Q Consensus       263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (510)
                      ++++++.++++.        +|....+++..+.++...              +.++++++++.+++.+        +|..
T Consensus       163 eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d  226 (331)
T 3dss_A          163 EELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPND  226 (331)
T ss_dssp             HHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTC
T ss_pred             HHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCC
Confidence            999999999987        677788999999888877              4578899999999885        3555


Q ss_pred             HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH---HcCChHHHHH
Q 010446          329 GMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH---IVGRGQEGRE  394 (510)
Q Consensus       329 ~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~  394 (510)
                      ..+++.+..++...           +.++++++.+++++++       .|+...   ++..++.+..   ..|..++...
T Consensus       227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-------~pd~~w---~l~~~~~~~~~~~~~~~~~~~~~  296 (331)
T 3dss_A          227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-------EPENKW---CLLTIILLMRALDPLLYEKETLQ  296 (331)
T ss_dssp             HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-------CTTCHH---HHHHHHHHHHHHCTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-------Ccccch---HHHHHHHHHHhhcccccHHHHHH
Confidence            56666555555544           3467888888888877       455533   2333333222   3567778888


Q ss_pred             HHHHHHHH
Q 010446          395 LLEECLLI  402 (510)
Q Consensus       395 ~~~~al~~  402 (510)
                      ++.+.+++
T Consensus       297 ~l~~l~~~  304 (331)
T 3dss_A          297 YFSTLKAV  304 (331)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88887765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.40  E-value=2.2e-11  Score=95.55  Aligned_cols=131  Identities=15%  Similarity=0.272  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh
Q 010446          163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI  242 (510)
Q Consensus       163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  242 (510)
                      .++..+|.++...|++++|+..+++++...       |....++..+|.++...|++++|..++++++...        |
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~   66 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------P   66 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------C
Confidence            367889999999999999999999988763       2224457889999999999999999999998752        3


Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      ....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|..++++++..
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            33567889999999999999999999999986        3444678889999999999999999999999875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.39  E-value=3.4e-12  Score=102.02  Aligned_cols=103  Identities=12%  Similarity=0.097  Sum_probs=91.9

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      .|.....++.+|.++...|++++|+..|++++...       |....+++.+|.++...|++++|+..|++++.+.    
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----   85 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----   85 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence            78899999999999999999999999999998764       3345568999999999999999999999999872    


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                          |....+++++|.+|...|++++|+..|++++++.
T Consensus        86 ----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           86 ----IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             ----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence                3445678999999999999999999999999884

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.39  E-value=9.3e-12  Score=99.48  Aligned_cols=103  Identities=15%  Similarity=0.121  Sum_probs=92.8

Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (510)
                      .|.....++.+|..+...|++++|+..|++++..        .|....++.++|.++...|++++|+..|++++.+    
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   84 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----   84 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            3777778999999999999999999999999986        2455678899999999999999999999999998    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                          .|....++.++|.+|...|++++|+..|++++++.
T Consensus        85 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           85 ----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             ----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence                45667889999999999999999999999999875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.39  E-value=3.9e-11  Score=98.08  Aligned_cols=140  Identities=12%  Similarity=0.042  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ..+..+..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++..      
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            45677899999999999999999999999987        4556788999999999999999999999999986      


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                        .|....++..+|.++...|++++|+.++++++..       .+..... .....++..+...|++++|+..+.++..+
T Consensus        77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKDA-KMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCCHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence              2444578899999999999999999999999987       3334332 23355666688899999999999998887


Q ss_pred             HHHh
Q 010446          403 TEKY  406 (510)
Q Consensus       403 ~~~~  406 (510)
                      ....
T Consensus       147 ~~~~  150 (166)
T 1a17_A          147 VDSL  150 (166)
T ss_dssp             HHHC
T ss_pred             hccc
Confidence            7553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.37  E-value=3.4e-11  Score=98.45  Aligned_cols=139  Identities=12%  Similarity=0.053  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC
Q 010446          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (510)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (510)
                      ...+..+..+|.++...|++++|+..+++++...       |....++..+|.++...|++++|+.++++++...     
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----   77 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence            3457788999999999999999999999998864       3335568999999999999999999999999862     


Q ss_pred             CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH--HHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL--FSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                         |....++..+|.++...|++++|+.++++++++        .|....++  ..++..+...|++++|+..+.++..+
T Consensus        78 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           78 ---KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence               344678999999999999999999999999987        23333444  45555688899999999999998887


Q ss_pred             HHHH
Q 010446          317 YTKV  320 (510)
Q Consensus       317 ~~~~  320 (510)
                      ....
T Consensus       147 ~~~~  150 (166)
T 1a17_A          147 VDSL  150 (166)
T ss_dssp             HHHC
T ss_pred             hccc
Confidence            7553

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=5.8e-11  Score=92.09  Aligned_cols=122  Identities=12%  Similarity=0.032  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ..+..+..+|..+...|++++|+..|+++++..        |....++.++|.++...|++++|+..+++++++      
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------   67 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            345668999999999999999999999999862        445688999999999999999999999999997      


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (510)
                        .|....++..+|.++...|++++|+..+++++++.....  ..|....+...++.+..
T Consensus        68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence              466688999999999999999999999999999864432  23444555555555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.36  E-value=3.7e-11  Score=93.25  Aligned_cols=103  Identities=15%  Similarity=-0.010  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ..+..+..+|..+...|++++|+..|++++++        .|....++.++|.++...|++++|+..+++++++      
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------   67 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            34677889999999999999999999999997        4566789999999999999999999999999986      


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                        +|....++.++|.++...|++++|+..+++++++...
T Consensus        68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  104 (126)
T 3upv_A           68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE  104 (126)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence              3455678999999999999999999999999998644

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.35  E-value=4.1e-11  Score=94.20  Aligned_cols=118  Identities=19%  Similarity=0.093  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE----SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (510)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (510)
                      .+..+.+.|..+...|+|++|+..|++++++........    .|....+|.++|.++..+|++++|+..++++++++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            356788999999999999999999999999964411100    1123459999999999999999999999999998666


Q ss_pred             HcCCCChHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446          320 VYGENDGRVGMAM----CSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       320 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (510)
                      . ++-+|....+|    +++|.++..+|++++|+..|++++++..+.
T Consensus        90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            5 34567788888    999999999999999999999999997763

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.35  E-value=3e-11  Score=94.93  Aligned_cols=119  Identities=16%  Similarity=0.075  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (510)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (510)
                      +..+.+.|..+...|++++|+..|++++++......    ...|....+|.++|.++..+|++++|+..++++++++.+.
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456688999999999999999999999998744110    0112245599999999999999999999999999986665


Q ss_pred             hCCCChhhHHHH----HHHHHHHHhcCChHHHHHHHHHHHHHHHHhcC
Q 010446          449 VGPDDQSISFPM----LHLGITLYHLNRDKEAEKLVLEALYIREIAFG  492 (510)
Q Consensus       449 ~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  492 (510)
                       ++-+|+...+|    +++|.++..+|++++|+..|++++++...--|
T Consensus        91 -~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           91 -GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             -CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             -ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence             34567888888    99999999999999999999999999877444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.35  E-value=2.9e-12  Score=108.46  Aligned_cols=167  Identities=11%  Similarity=-0.014  Sum_probs=116.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh
Q 010446          291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  370 (510)
Q Consensus       291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (510)
                      ...+......|++++|.+.+......        .+..+..+..+|..+...|++++|+.+|++++......    ++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~   75 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEWD   75 (198)
T ss_dssp             --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTCC
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----cccc
Confidence            34556667778888888777755442        24466788999999999999999999999999874321    1111


Q ss_pred             H----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446          371 I----------MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (510)
Q Consensus       371 ~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (510)
                      .          ...++.++|.++...|++++|+.++++++.+        .|....++..+|.+|...|++++|+.+|++
T Consensus        76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  147 (198)
T 2fbn_A           76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYK  147 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            1          1367899999999999999999999999986        345567899999999999999999999999


Q ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 010446          441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE-KLVLEALY  485 (510)
Q Consensus       441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~  485 (510)
                      ++.+        .|....++..++.++...|+..++. ..+.+.+.
T Consensus       148 al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          148 AASL--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHH--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9985        3555677889999999999888877 44444433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.35  E-value=2.2e-11  Score=104.32  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      ...++.+|..+...|++++|+..+++++.          + ...++.++|.++...|++++|+.++++++.+        
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   66 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------   66 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            45678899999999999999999998841          1 3578999999999999999999999999986        


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc------CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (510)
                      .|....++.++|.++...|++++|+..++++++.......      .....+....++.++|.++...|++++|+..+++
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            2445678999999999999999999999999987432100      0002334567889999999999999999999999


Q ss_pred             HHHH
Q 010446          399 CLLI  402 (510)
Q Consensus       399 al~~  402 (510)
                      ++.+
T Consensus       147 al~~  150 (213)
T 1hh8_A          147 ATSM  150 (213)
T ss_dssp             HHTT
T ss_pred             HHHc
Confidence            9875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.34  E-value=2.4e-12  Score=115.35  Aligned_cols=194  Identities=12%  Similarity=0.011  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      +..+..+|..+...|++++|+.+|++++..        .|....++.++|.+|...|++++|+..+++++++        
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            567889999999999999999999999997        5666889999999999999999999999999874        


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (510)
                      +|....++.++|.++...|++++|+..|++++++....   .........  ..+  ..      .++..+...     .
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~~~~--~~~--~~------~~~~~~~~~-----~  129 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ---RLNFGDDIP--SAL--RI------AKKKRWNSI-----E  129 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCCCSHHH--HHH--HH------HHHHHHHHH-----H
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hhhHHHHHH--HHH--HH------HHHHHHHHH-----H
Confidence            45566889999999999999999999999999987652   111111111  111  11      111111111     1


Q ss_pred             HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhc-CChHHHHHHHHHH
Q 010446          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEA  483 (510)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  483 (510)
                      ....+..+.   +...++.++  .|++++|++.++++++.        .|........++.++... +.+++|...|.++
T Consensus       130 ~~~~~~~~~---i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          130 ERRIHQESE---LHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             HTCCCCCCH---HHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhHH---HHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            111122333   333445543  68999999999988873        334344455666666555 6678888888877


Q ss_pred             HH
Q 010446          484 LY  485 (510)
Q Consensus       484 l~  485 (510)
                      .+
T Consensus       197 ~~  198 (281)
T 2c2l_A          197 DE  198 (281)
T ss_dssp             SC
T ss_pred             hc
Confidence            55

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.34  E-value=1.3e-11  Score=105.66  Aligned_cols=136  Identities=13%  Similarity=0.086  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                      ..++.+|..+...|++++|+..|++++.       +    ...++.++|.+|...|++++|+.++++++++        .
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~   67 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D   67 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            3478899999999999999999998841       1    2568999999999999999999999999987        4


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--------GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (510)
                      |....++.++|.++...|++++|+..++++++......        ....+....++.++|.++...|++++|...++++
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            55678999999999999999999999999998632110        0022456688999999999999999999999999


Q ss_pred             HHH
Q 010446          356 LRV  358 (510)
Q Consensus       356 l~~  358 (510)
                      +.+
T Consensus       148 l~~  150 (213)
T 1hh8_A          148 TSM  150 (213)
T ss_dssp             HTT
T ss_pred             HHc
Confidence            887

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.33  E-value=3e-12  Score=108.36  Aligned_cols=159  Identities=12%  Similarity=0.058  Sum_probs=113.6

Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh---
Q 010446          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI---  242 (510)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---  242 (510)
                      ...+......|+++++...++.....       .+..+..+..+|..+...|++++|+..|++++.+....  ++..   
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~   78 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE-------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQI   78 (198)
T ss_dssp             --------------CCCSGGGCCHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhh
Confidence            34455666778888887777543322       14556678899999999999999999999999864221  0000   


Q ss_pred             -------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          243 -------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  315 (510)
Q Consensus       243 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  315 (510)
                             ....++.++|.++...|++++|+.++++++++        .|....++..+|.+|...|++++|+..|++++.
T Consensus        79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A           79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                   12478999999999999999999999999987        456678999999999999999999999999998


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHH
Q 010446          316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  349 (510)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  349 (510)
                      +        .|....++..++.++...++..++.
T Consensus       151 ~--------~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          151 L--------NPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             H--------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            6        2444567788888888887777766

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.32  E-value=6.3e-11  Score=92.71  Aligned_cols=125  Identities=9%  Similarity=0.085  Sum_probs=107.1

Q ss_pred             CCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446          155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (510)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (510)
                      ....+.....+..+|.++...|++++|+..+++++...       |....++..+|.++...|++++|+.+++++++.. 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-   80 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-   80 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence            34567888999999999999999999999999998764       3335568999999999999999999999999862 


Q ss_pred             HhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC
Q 010446          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK  302 (510)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  302 (510)
                             |....++..+|.++...|++++|+.+++++++.        .|....++..++.++...|+
T Consensus        81 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           81 -------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             -------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                   344678899999999999999999999999987        45567788899999887764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.29  E-value=5.6e-12  Score=121.18  Aligned_cols=154  Identities=12%  Similarity=0.104  Sum_probs=125.8

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC--------CchH
Q 010446          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--------DEPL  201 (510)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~  201 (510)
                      ..+++++|+..++.+++.          .+..+..+..+|..++..|+|++|+..|++++.+......        ..+.
T Consensus       246 ~l~~~~~A~~~~~~~~~~----------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~  315 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE----------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF  315 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHH----------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence            345667788777777766          6778889999999999999999999999999988633110        0123


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (510)
                      ...+++++|.+|..+|++++|+.+|++++++.        |....+++++|.+|..+|++++|+..|++++++       
T Consensus       316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-------  380 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-------  380 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            46778999999999999999999999999872        445788999999999999999999999999987       


Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHH
Q 010446          282 ESADLVLPLFSLGSLFIKEGKAVDAESV  309 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~  309 (510)
                       .|....++..++.++...+++++|...
T Consensus       381 -~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          381 -NPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             -C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             455678899999999999999887753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.28  E-value=8.1e-11  Score=92.10  Aligned_cols=124  Identities=14%  Similarity=0.096  Sum_probs=105.3

Q ss_pred             CCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (510)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (510)
                      ...+.....++.+|..+...|++++|+..++++++.        .|....++..+|.++...|++++|+.+++++++.  
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--   79 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--   79 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence            344566777999999999999999999999999874        2444678999999999999999999999999987  


Q ss_pred             HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCC
Q 010446          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  344 (510)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  344 (510)
                            .|....++..+|.++...|++++|+.++++++..        .|....++..++.++...|+
T Consensus        80 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 ------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             ------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                  4556788999999999999999999999999986        34445677888888877664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.28  E-value=1.1e-10  Score=90.82  Aligned_cols=123  Identities=16%  Similarity=0.139  Sum_probs=106.2

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      .+..+..+..+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+.++++++...    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----   76 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID----   76 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----
Confidence            56778899999999999999999999999998764       2234568899999999999999999999999862    


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA  303 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  303 (510)
                          |....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++
T Consensus        77 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           77 ----PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred             ----ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence                334678899999999999999999999999987        345567888999999988876

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.27  E-value=1.8e-10  Score=89.67  Aligned_cols=123  Identities=20%  Similarity=0.167  Sum_probs=105.2

Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      .+.....+..+|..+...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++..    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----   75 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence            4566788999999999999999999999999987        3445788999999999999999999999999985    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCCh
Q 010446          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG  389 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  389 (510)
                          .|....++..+|.++...|++++|..++++++..       .++.   ..++..++.++...|++
T Consensus        76 ----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~---~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 ----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL-------DPDN---ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHHHHTTC
T ss_pred             ----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------Cccc---hHHHHHHHHHHHHHhcC
Confidence                2334568899999999999999999999999987       2333   34568899999988876

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.27  E-value=2.4e-11  Score=96.46  Aligned_cols=104  Identities=13%  Similarity=0.078  Sum_probs=91.9

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      .|.....++.+|..+...|++++|+..|++++...       |....++..+|.++...|++++|+..|++++.+.    
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----   82 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD----   82 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence            78889999999999999999999999999998764       3345568999999999999999999999999872    


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (510)
                          |....++.++|.++...|++++|+..+++++++..
T Consensus        83 ----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           83 ----INEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             ----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                34456788999999999999999999999999853

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.27  E-value=1.3e-11  Score=118.68  Aligned_cols=160  Identities=16%  Similarity=0.239  Sum_probs=125.3

Q ss_pred             hhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC-------CChhHHH
Q 010446          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVT  246 (510)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~  246 (510)
                      ..+++++|+..++.+....       |..+..+..+|..++..|++++|+..|++++++.......       ..+....
T Consensus       246 ~l~~~~~A~~~~~~~~~~~-------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  318 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEK-------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA  318 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHH-------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence            3456667776665554433       6777889999999999999999999999999975321000       0123368


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (510)
                      ++.++|.+|..+|++++|+.++++++++        .|....+++++|.+|..+|++++|+..|++++++        .|
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P  382 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP  382 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence            8999999999999999999999999998        4667889999999999999999999999999985        45


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHH-HHHHH
Q 010446          327 RVGMAMCSLAHAKCANGNAEEAVEL-YKKAL  356 (510)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~-~~~al  356 (510)
                      ....++..++.++...|++++|... +.+++
T Consensus       383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          383 QNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667889999999999999887753 44443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.27  E-value=6.5e-11  Score=98.02  Aligned_cols=122  Identities=11%  Similarity=0.119  Sum_probs=102.7

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHH
Q 010446          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL  207 (510)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (510)
                      +...|++++|+..+++++..          .|..+.++..+|.++...|++++|+..+++++.+.       |....++.
T Consensus        20 ~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~   82 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA----------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYA   82 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHH
Confidence            45678999999999999987          77778899999999999999999999999999876       22244588


Q ss_pred             HHHHH-HHhhhcH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          208 HMGSM-YSTLENY--EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       208 ~l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .+|.+ +...|++  ++|+.+++++++..        |....++..+|.++...|++++|+.+++++++.
T Consensus        83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           83 ALATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            99999 8899999  99999999999862        444678899999999999999999999999986

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.26  E-value=1.4e-11  Score=110.29  Aligned_cols=194  Identities=12%  Similarity=0.041  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                      +..+..+|..+...|++++|+..|++++..        .|....++.++|.+|...|++++|+..+++++++        
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            345789999999999999999999999986        2445678999999999999999999999999876        


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010446          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (510)
                      .|....+++.+|.+|...|++++|+..|++++++.......-.. .......          ..++..+...    ... 
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-~~~~~~~----------~~~~~~~~~~----~~~-  131 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD-DIPSALR----------IAKKKRWNSI----EER-  131 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS-HHHHHHH----------HHHHHHHHHH----HHT-
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH-HHHHHHH----------HHHHHHHHHH----HHH-
Confidence            56678899999999999999999999999999986543111111 1111111          1111111111    111 


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc-cCHHHHHHHHHHH
Q 010446          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLRIC  441 (510)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  441 (510)
                        ..+..+.+.   ..++.++  .|++++|++.++++++.        .|........++.++... +.+++|.+.|.++
T Consensus       132 --~~~~~~~i~---~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          132 --RIHQESELH---SYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             --CCCCCCHHH---HHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             --HHhhhHHHH---HHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence              123333333   3344443  68889999888887763        344445555666666665 7788899999887


Q ss_pred             HH
Q 010446          442 LD  443 (510)
Q Consensus       442 l~  443 (510)
                      .+
T Consensus       197 ~~  198 (281)
T 2c2l_A          197 DE  198 (281)
T ss_dssp             SC
T ss_pred             hc
Confidence            65

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.26  E-value=1.7e-10  Score=94.20  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=94.2

Q ss_pred             CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (510)
                      +.+..+..+..+|.++...|++++|+.+|++++++        .|....++.++|.+|...|++++|+..+++++.+   
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---   74 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---   74 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence            34567888999999999999999999999999997        4566889999999999999999999999999986   


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                           +|....++.++|.++...|++++|+.+|++++++.
T Consensus        75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                 34556789999999999999999999999999985

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.26  E-value=2.5e-10  Score=90.58  Aligned_cols=104  Identities=14%  Similarity=0.019  Sum_probs=93.4

Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      +|.....++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+    
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   81 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM----   81 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4677888999999999999999999999999987        5667888999999999999999999999999986    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                          .|....++.++|.++...|++++|+..|++++.+..
T Consensus        82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                234446788999999999999999999999999865

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.26  E-value=5.2e-11  Score=98.65  Aligned_cols=122  Identities=13%  Similarity=0.179  Sum_probs=101.8

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 010446          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (510)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (510)
                      +...|++++|+..+++++...        |....++..+|.+|...|++++|+.++++++++.        |....++..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence            356789999999999998852        3446789999999999999999999999999873        445778899


Q ss_pred             HHHH-HHHcCCh--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          293 LGSL-FIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       293 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      +|.+ +...|++  ++|+..+++++..        .|....++..+|.++...|++++|+.++++++..
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999 8899999  9999999999986        3444578889999999999999999999999987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.26  E-value=1.2e-10  Score=94.76  Aligned_cols=109  Identities=17%  Similarity=0.132  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT----------SILLVTSLLGMAKVLGSIGRAKKAVEIYH  269 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~  269 (510)
                      ...+..+...|..++..|++++|+..|.+++.+.......+          .|....++.++|.+|...|++++|+..++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            34566789999999999999999999999999865532111          34567889999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      +++++        .|....+++.+|.+|..+|++++|+..|++++.+
T Consensus        88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            99998        5667889999999999999999999999999987

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.26  E-value=1.3e-10  Score=94.75  Aligned_cols=105  Identities=15%  Similarity=-0.014  Sum_probs=93.4

Q ss_pred             CCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 010446          156 NKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES  235 (510)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  235 (510)
                      ...+..+..+..+|.++...|++++|+..|++++.+.       |....++..+|.+|...|++++|+.+|++++++.  
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--   75 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--   75 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Confidence            3467788999999999999999999999999999875       3345668999999999999999999999999872  


Q ss_pred             hcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          236 RYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       236 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                            |....++.++|.+|...|++++|+.+|++++++.
T Consensus        76 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           76 ------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                  4457889999999999999999999999999984

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.26  E-value=2.8e-12  Score=123.71  Aligned_cols=179  Identities=11%  Similarity=-0.000  Sum_probs=129.9

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (510)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (510)
                      ..+..+..+|.++...|++++|+.+|++++++        +|....++.++|.++..+|++++|+.++++++++      
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------   69 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   69 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            34566778889999999999999999999986        3555788999999999999999999999999987      


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH--HHhccCHHHHHHHHH---
Q 010446          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS--YSRSKNFVEAERLLR---  439 (510)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~---  439 (510)
                       .++.   ..++.++|.+|..+|++++|+..|++++++.        |....++..++.+  +..+|++++|++.++   
T Consensus        70 -~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~  137 (477)
T 1wao_1           70 -DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  137 (477)
T ss_dssp             -CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred             -CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence             3333   4577899999999999999999999999863        2233456667777  888999999999999   


Q ss_pred             --------HHHHHHHHHhCCCChh---hHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHH
Q 010446          440 --------ICLDIMTKTVGPDDQS---ISFPMLHLGITLYHLNRDK--EAEKLVLEALYIREI  489 (510)
Q Consensus       440 --------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~  489 (510)
                              +++.+.....++..+.   ....+..+...+...+...  ++..++.++.++..+
T Consensus       138 ~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~  200 (477)
T 1wao_1          138 SVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK  200 (477)
T ss_dssp             STTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             hhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence                    5555433333333333   2333444555555555544  445577777777654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.26  E-value=3.2e-12  Score=123.34  Aligned_cols=179  Identities=15%  Similarity=0.141  Sum_probs=131.5

Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (510)
                      ..+..+..+|..+...|++++|+.+|++++++        .|....++.++|.+|..+|++++|+..+++++++      
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------   69 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   69 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            44556778899999999999999999999997        5666899999999999999999999999999985      


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH--HHHcCChHHHHHHHH---
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL--LHIVGRGQEGRELLE---  397 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~---  397 (510)
                        +|....++.++|.+|..+|++++|+..+++++++       .++...   ++..++.+  +...|++++|++.++   
T Consensus        70 --~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~---~~~~l~~~~~~~~~g~~~~A~~~~~~~~  137 (477)
T 1wao_1           70 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKD---AKMKYQECNKIVKQKAFERAIAGDEHKR  137 (477)
T ss_dssp             --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTCTT---HHHHHHHHHHHHHHHHHCCC------CC
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHH---HHHHHHHHHHHHHHHHHHHHhccccccc
Confidence              4556778999999999999999999999999988       233332   34566666  888999999999998   


Q ss_pred             --------HHHHHHHHhhCCCChh---HHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHH
Q 010446          398 --------ECLLITEKYKGKEHPS---FVTHLLNLAASYSRSKNF--VEAERLLRICLDIMTK  447 (510)
Q Consensus       398 --------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~  447 (510)
                              +++.+.....++..+.   .......+...+...+..  ..+..++.++.++..+
T Consensus       138 ~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~  200 (477)
T 1wao_1          138 SVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK  200 (477)
T ss_dssp             STTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             hhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence                    5555443333333332   233344455555555543  4555577777777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.25  E-value=2e-10  Score=93.43  Aligned_cols=127  Identities=11%  Similarity=0.003  Sum_probs=102.4

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC----CC-------chHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK----DD-------EPLLDAILLHMGSMYSTLENYEKSMLVY  226 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~  226 (510)
                      ....+..+...|..++..|+|++|+..|++++.+.....    +.       .|....++.++|.+|...|++++|+..+
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            445678899999999999999999999999998853321    11       3556678999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchH-HHHHHHHHHHHHc
Q 010446          227 QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV-LPLFSLGSLFIKE  300 (510)
Q Consensus       227 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~  300 (510)
                      ++++.+        +|....+++.+|.+|...|++++|+..|++++++        .|... .+...++.+....
T Consensus        87 ~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           87 SEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHH
Confidence            999987        3556789999999999999999999999999998        34444 4455555554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.24  E-value=1.7e-08  Score=90.66  Aligned_cols=235  Identities=11%  Similarity=-0.017  Sum_probs=171.1

Q ss_pred             HhhCChH-HHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhc----------HHHHHHHHHHHHHHHHHhcCCCC
Q 010446          173 VYIGDLK-FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN----------YEKSMLVYQRVINVLESRYGKTS  241 (510)
Q Consensus       173 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~  241 (510)
                      ...|++. +|+..+..++.+.       |....+++..+.+....|.          +++++.++..++..        +
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~  104 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N  104 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------C
Confidence            3567776 7899998888664       5666678888888877766          57777777777764        4


Q ss_pred             hhHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHH
Q 010446          242 ILLVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYT  318 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  318 (510)
                      |....++...+.++...|  .+++++.++.++++.        +|....++...+.+....|. +++++.++.++++.  
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--  174 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  174 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--
Confidence            566788999999999998  489999999999987        67778899999999999999 59999999999985  


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH
Q 010446          319 KVYGENDGRVGMAMCSLAHAKCAN--------------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH  384 (510)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~  384 (510)
                            +|....++++.+.++...              +.++++++++.+++..       .|++.   .+++.+..++.
T Consensus       175 ------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-------~P~d~---SaW~Y~r~ll~  238 (331)
T 3dss_A          175 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-------DPNDQ---SAWFYHRWLLG  238 (331)
T ss_dssp             ------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-------STTCH---HHHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHH
Confidence                  466667888888888776              4588999999999987       34443   34444444444


Q ss_pred             Hc-----------CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH---HhccCHHHHHHHHHHHHHHHHHHhC
Q 010446          385 IV-----------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY---SRSKNFVEAERLLRICLDIMTKTVG  450 (510)
Q Consensus       385 ~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~  450 (510)
                      ..           +.++++++.+++++++.        |+...++..++.+.   ...|..++...++.+.+++      
T Consensus       239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~--------pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------  304 (331)
T 3dss_A          239 AGSGRCELSVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV------  304 (331)
T ss_dssp             SSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH------
T ss_pred             hccCccccchHHHHHHHHHHHHHHHHHhhC--------cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh------
Confidence            43           34667777777777652        33344444444332   2467788888999888875      


Q ss_pred             CCChhhHHHHHHHH
Q 010446          451 PDDQSISFPMLHLG  464 (510)
Q Consensus       451 ~~~~~~~~~~~~la  464 (510)
                        +|....-|..++
T Consensus       305 --Dp~r~~~y~d~~  316 (331)
T 3dss_A          305 --DPMRAAYLDDLR  316 (331)
T ss_dssp             --CGGGHHHHHHHH
T ss_pred             --CcchhhHHHHHH
Confidence              455554444443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.24  E-value=4.4e-09  Score=94.82  Aligned_cols=255  Identities=11%  Similarity=-0.005  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhcCC
Q 010446          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGK  239 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~  239 (510)
                      ...++..+..+....+..++|+..+++++.+.       |....+++..+.++...| .+++++.++.+++..       
T Consensus        53 y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-------  118 (349)
T 3q7a_A           53 YKDAMDYFRAIAAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-------  118 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-------
Confidence            33344444444445566678999999998875       555677899999999999 599999999999864       


Q ss_pred             CChhHHHHHHHHHHHHhhc-C-CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChH--------HHHHH
Q 010446          240 TSILLVTSLLGMAKVLGSI-G-RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAESV  309 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~  309 (510)
                       +|....+++..+.++... + ++++++.++.++++.        +|....++...+.+....|.++        +++++
T Consensus       119 -nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~  189 (349)
T 3q7a_A          119 -NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW  189 (349)
T ss_dssp             -TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence             456678888999999888 7 899999999998865        6677889999999999888888        89999


Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 010446          310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-------AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL  382 (510)
Q Consensus       310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~  382 (510)
                      +.++++.        ++....+++..+.++...++       ++++++++++++..       .|++   ..++..+..+
T Consensus       190 ~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-------~P~n---~SaW~Ylr~L  251 (349)
T 3q7a_A          190 CNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-------IPHN---VSAWNYLRGF  251 (349)
T ss_dssp             HHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHH
T ss_pred             HHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHH
Confidence            9988885        56667889999999999887       78999999999887       3434   3466777788


Q ss_pred             HHHcCChHH------------HHH-HHHHHHHHHHHhhCC-----CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          383 LHIVGRGQE------------GRE-LLEECLLITEKYKGK-----EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       383 ~~~~g~~~~------------A~~-~~~~al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      +...|+...            .+. .+........+..+.     ..+....++..++.+|...|+.++|.++++...+ 
T Consensus       252 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-  330 (349)
T 3q7a_A          252 LKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-  330 (349)
T ss_dssp             HHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Confidence            877776410            000 011111222222111     1234566888999999999999999999988654 


Q ss_pred             HHHHhCCCChhhHHHHHHH
Q 010446          445 MTKTVGPDDQSISFPMLHL  463 (510)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~l  463 (510)
                            .-+|-....+...
T Consensus       331 ------~~dpir~~yw~~~  343 (349)
T 3q7a_A          331 ------EYDQMRAGYWEFR  343 (349)
T ss_dssp             ------TTCGGGHHHHHHH
T ss_pred             ------hhChHHHHHHHHH
Confidence                  2345555444433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.23  E-value=2.1e-09  Score=96.91  Aligned_cols=244  Identities=9%  Similarity=-0.044  Sum_probs=180.7

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHh
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN  278 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  278 (510)
                      +....++..+..+....+..++|+..+.+++.+        +|....+++..+.++...| .+++++.++.+++..    
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----  118 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----  118 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence            445555666666666677778999999999986        3566788999999999999 599999999999975    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHH--------HH
Q 010446          279 RGTESADLVLPLFSLGSLFIKE-G-KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE--------EA  348 (510)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A  348 (510)
                          +|....+++..+.++... + ++++++.++.++++        .+|....++...+.+....|.++        ++
T Consensus       119 ----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--------~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eE  186 (349)
T 3q7a_A          119 ----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--------PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSE  186 (349)
T ss_dssp             ----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--------SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhccccccchhhHHHH
Confidence                677889999999999988 7 89999999998886        35666788888888888888777        89


Q ss_pred             HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010446          349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  421 (510)
Q Consensus       349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  421 (510)
                      +++++++++.       .+.+   ..++...+.++...++       ++++++++++++.+        +|....++..+
T Consensus       187 Le~~~k~I~~-------dp~N---~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Yl  248 (349)
T 3q7a_A          187 LDWCNEMLRV-------DGRN---NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYL  248 (349)
T ss_dssp             HHHHHHHHHH-------CTTC---HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred             HHHHHHHHHh-------CCCC---HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence            9999998887       2222   4577889999998887       67888888888875        46666788888


Q ss_pred             HHHHHhccCHHH------------HHH-HHHHHHHHHHHHhCCC-----ChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          422 AASYSRSKNFVE------------AER-LLRICLDIMTKTVGPD-----DQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       422 a~~~~~~g~~~~------------A~~-~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                      ..++...|+...            .+. .+....+.+.+..+..     .+....++..++.+|...|+.++|.++++..
T Consensus       249 r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l  328 (349)
T 3q7a_A          249 RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL  328 (349)
T ss_dssp             HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            888887776400            000 0111222222222211     2345567889999999999999999888876


Q ss_pred             HH
Q 010446          484 LY  485 (510)
Q Consensus       484 l~  485 (510)
                      .+
T Consensus       329 ~~  330 (349)
T 3q7a_A          329 SS  330 (349)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.21  E-value=9.2e-10  Score=85.55  Aligned_cols=102  Identities=13%  Similarity=0.142  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (510)
                      .++.+|.++...|++++|+..++++++.     .++++....++..+|.++...|++++|+..+++++..     .++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence            4678899999999999999999999886     3344445578999999999999999999999999985     34555


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ....++..+|.++...|++++|+..+++++..
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            55788999999999999999999999999987

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.19  E-value=5.6e-09  Score=92.22  Aligned_cols=256  Identities=13%  Similarity=0.069  Sum_probs=164.0

Q ss_pred             HHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010446          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (510)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (510)
                      -.+..|+|..++.-..+   +    .+..+..  ....+.+.|..+|++....               .+.|. ..+...
T Consensus        22 n~fy~G~yq~~i~e~~~---~----~~~~~~~--~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~   76 (310)
T 3mv2_B           22 QNYYTGNFVQCLQEIEK---F----SKVTDNT--LLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL   76 (310)
T ss_dssp             HHHTTTCHHHHTHHHHT---S----SCCCCHH--HHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred             HHHHhhHHHHHHHHHHh---c----CccchHH--HHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence            34578999998873322   2    2333332  3456677888888877421               12232 223444


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (510)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (510)
                      ++..+.  ++   |+..+++.++.       ..+ ....+..+|.++...|++++|++++.+.+..     ++ .+....
T Consensus        77 la~~~~--~~---a~~~l~~l~~~-------~~~-~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~le  137 (310)
T 3mv2_B           77 YVQFLD--TK---NIEELENLLKD-------KQN-SPYELYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTE  137 (310)
T ss_dssp             HHHHHT--TT---CCHHHHHTTTT-------SCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHH
T ss_pred             HHHHhc--cc---HHHHHHHHHhc-------CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHH
Confidence            444442  22   55555555432       112 2344568999999999999999999998652     11 136778


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC---ChHHHHHHHHHH--HHHHHcC--ChHHHHHHHHHHHHHH
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD---DSIMENMRIDLA--ELLHIVG--RGQEGRELLEECLLIT  403 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~~la--~~~~~~g--~~~~A~~~~~~al~~~  403 (510)
                      ++..++.++...|+.+.|.+.++++.+.       .++   ...  .+...++  .+....|  ++.+|..+|+++..  
T Consensus       138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~-------~~d~~~~~d--~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--  206 (310)
T 3mv2_B          138 LLLLAIEVALLNNNVSTASTIFDNYTNA-------IEDTVSGDN--EMILNLAESYIKFATNKETATSNFYYYEELSQ--  206 (310)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------SCHHHHHHH--HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-------Cccccccch--HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--
Confidence            8888999999999999999999998776       221   001  1223444  3355556  99999999999654  


Q ss_pred             HHhhCCCChh--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCC--ChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446          404 EKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD--DQSISFPMLHLGITLYHLNRDKEAEKL  479 (510)
Q Consensus       404 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (510)
                            ..|.  ....+.+   ++..+|++++|...++..++..-.....+  .|....++.+++.+...+|+  +|.++
T Consensus       207 ------~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l  275 (310)
T 3mv2_B          207 ------TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDL  275 (310)
T ss_dssp             ------TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHH
T ss_pred             ------hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHH
Confidence                  2233  2223333   89999999999999997666432210000  24566777888888888997  88888


Q ss_pred             HHHHHHHHHHhcCCCCcc
Q 010446          480 VLEALYIREIAFGKDSLP  497 (510)
Q Consensus       480 ~~~al~~~~~~~~~~~~~  497 (510)
                      ++++.+..     |+||-
T Consensus       276 ~~qL~~~~-----P~hp~  288 (310)
T 3mv2_B          276 TNQLVKLD-----HEHAF  288 (310)
T ss_dssp             HHHHHHTT-----CCCHH
T ss_pred             HHHHHHhC-----CCChH
Confidence            88877643     66643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.18  E-value=1.5e-09  Score=84.40  Aligned_cols=102  Identities=18%  Similarity=0.103  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (510)
                      ++..+|..+...|++++|+..+++++..       .|+++....++..+|.++...|++++|+..|++++...     ++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CC
Confidence            4677899999999999999999999887       45566556778999999999999999999999998853     34


Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010446          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (510)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (510)
                      ++....++..+|.+|...|++++|+..|++++..
T Consensus        72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4455788999999999999999999999999985

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.17  E-value=6.2e-09  Score=91.95  Aligned_cols=269  Identities=12%  Similarity=0.029  Sum_probs=170.2

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHH
Q 010446          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (510)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      .++..+-.|+|..++.-..+   +       .+..+.  .....+.++|+.+|++...              ..+.|.. 
T Consensus        19 ~ikn~fy~G~yq~~i~e~~~---~-------~~~~~~--~~~~~~~Rs~iAlg~~~~~--------------~~~~~~~-   71 (310)
T 3mv2_B           19 NIKQNYYTGNFVQCLQEIEK---F-------SKVTDN--TLLFYKAKTLLALGQYQSQ--------------DPTSKLG-   71 (310)
T ss_dssp             HHHHHHTTTCHHHHTHHHHT---S-------SCCCCH--HHHHHHHHHHHHTTCCCCC--------------CSSSTTH-
T ss_pred             HHHHHHHhhHHHHHHHHHHh---c-------CccchH--HHHHHHHHHHHHcCCCccC--------------CCCCHHH-
Confidence            56677889999998873321   1       222333  3556677788889988742              1222332 


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                      .+...++..+.  ++   |+..+++.++       ...+. ..++..+|.++...|++++|+.++.+.+..     ++ .
T Consensus        72 ~a~~~la~~~~--~~---a~~~l~~l~~-------~~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~  132 (310)
T 3mv2_B           72 KVLDLYVQFLD--TK---NIEELENLLK-------DKQNS-PYELYLLATAQAILGDLDKSLETCVEGIDN-----DE-A  132 (310)
T ss_dssp             HHHHHHHHHHT--TT---CCHHHHHTTT-------TSCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-S
T ss_pred             HHHHHHHHHhc--cc---HHHHHHHHHh-------cCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-C
Confidence            22344444432  22   5666665543       11122 334568999999999999999999998653     11 1


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHh
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG--NAEEAVELYKKALRVIKD  361 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~  361 (510)
                      +....++..++.++..+|+.+.|.+.++++.+......  ...+...+...-|.+....|  ++.+|..+|+++.+.   
T Consensus       133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---  207 (310)
T 3mv2_B          133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---  207 (310)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---
T ss_pred             cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---
Confidence            36778888999999999999999999998876511000  00122223333344455555  999999999996543   


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (510)
                          .++. .....+.+   ++..+|++++|...++..++........+  .|....++.+++.+....|+  +|.++++
T Consensus       208 ----~p~~-~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~  277 (310)
T 3mv2_B          208 ----FPTW-KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTN  277 (310)
T ss_dssp             ----SCSH-HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHH
T ss_pred             ----CCCc-ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHH
Confidence                2221 11122223   89999999999999997666542210000  25567788888888888897  8889998


Q ss_pred             HHHHHHHHHhCCCChhhHH
Q 010446          440 ICLDIMTKTVGPDDQSISF  458 (510)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~  458 (510)
                      ++.+.     .|+||.+..
T Consensus       278 qL~~~-----~P~hp~i~d  291 (310)
T 3mv2_B          278 QLVKL-----DHEHAFIKH  291 (310)
T ss_dssp             HHHHT-----TCCCHHHHH
T ss_pred             HHHHh-----CCCChHHHH
Confidence            88874     466765543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.17  E-value=1.4e-09  Score=83.75  Aligned_cols=118  Identities=20%  Similarity=0.378  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 010446          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (510)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (510)
                      ...++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++..       
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   72 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------   72 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence            3677889999999999999999999999986        3445678899999999999999999999999875       


Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 010446          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  387 (510)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  387 (510)
                       .|....++..+|.++...|++++|..++++++..       .++.+   .++..++.++...|
T Consensus        73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~~---~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPNNA---EAKQNLGNAKQKQG  125 (125)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCH---HHHHHHHHHHHHHC
T ss_pred             -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCcH---HHHHHHHHHHHhcc
Confidence             2333567889999999999999999999999987       33333   35577888776654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.17  E-value=6.1e-10  Score=87.63  Aligned_cols=104  Identities=18%  Similarity=0.133  Sum_probs=93.2

Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      +..+..+..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+..+++++.+     
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----   72 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----   72 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            345778999999999999999999999999997        4556789999999999999999999999999986     


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                         .|....++..+|.++...|++++|+..+++++.+...
T Consensus        73 ---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           73 ---DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ---CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence               3445678999999999999999999999999998765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.17  E-value=1.2e-09  Score=84.18  Aligned_cols=119  Identities=14%  Similarity=0.211  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (510)
                      ..+.++..+|.++...|++++|+..+++++...       |....++..+|.++...|++++|+.++++++...      
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------   73 (125)
T 1na0_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------   73 (125)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence            346788999999999999999999999998764       2224458899999999999999999999998752      


Q ss_pred             CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC
Q 010446          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG  301 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  301 (510)
                        |....++..+|.++...|++++|+.+++++++.        .|....++..++.++...|
T Consensus        74 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           74 --PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             --CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence              333567889999999999999999999999987        4555677888888877654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.16  E-value=1.4e-09  Score=84.56  Aligned_cols=106  Identities=8%  Similarity=0.152  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 010446          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (510)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (510)
                      .+..+..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++...... ..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~   73 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence            4667889999999999999999999999987        34557889999999999999999999999999986543 22


Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ..+....++..+|.++...|++++|..++++++..
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            33334788999999999999999999999999986

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.16  E-value=1.5e-09  Score=85.42  Aligned_cols=102  Identities=16%  Similarity=0.140  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (510)
                      .+..+..+|..+...|++++|+..|++++...        |....++.++|.++...|++++|+..+++++++       
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            35568999999999999999999999999862        444678999999999999999999999999987       


Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (510)
                       .|....++..+|.++...|++++|+..+++++.+...
T Consensus        73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence             4556789999999999999999999999999998755

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.16  E-value=1.1e-09  Score=85.07  Aligned_cols=123  Identities=10%  Similarity=0.029  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC
Q 010446          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (510)
                      ..+..+..+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+.++++++...... ..
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~   73 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence            456788999999999999999999999998764       2234568899999999999999999999999987542 22


Q ss_pred             CChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 010446          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  299 (510)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  299 (510)
                      +.+....++..+|.++...|++++|+.+++++++.        .+ .......++.+...
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHH
Confidence            33344788999999999999999999999999986        22 24455555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.14  E-value=3.7e-10  Score=86.57  Aligned_cols=97  Identities=10%  Similarity=-0.069  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCCh
Q 010446          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (510)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (510)
                      .+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..|++++++        .|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            3578999999999999999999999985        4566788999999999999999999999999995        45


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ....++..+|.++...|++++|+..+++++++.
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            566788999999999999999999999998754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.13  E-value=8.8e-10  Score=102.43  Aligned_cols=133  Identities=13%  Similarity=0.139  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (510)
                      .+..+..+|..+...|++++|+..|++++++.....        ....+....++.++|.+|..+|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            345588999999999999999999999998654420        012456788999999999999999999999999998


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHH
Q 010446          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  350 (510)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  350 (510)
                      +        .|....+++.+|.+|..+|++++|+..|++++++        .|....++..++.++...++.+++..
T Consensus       302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6        4667889999999999999999999999999986        23344567788888888887777654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.12  E-value=1.2e-09  Score=101.57  Aligned_cols=133  Identities=11%  Similarity=0.047  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc---------CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 010446          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL---------KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN  231 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  231 (510)
                      .+..+..+|..+...|++++|+..|++++.+....         ....+....++.++|.+|..+|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            35567889999999999999999999999854321         013466778899999999999999999999999997


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHH
Q 010446          232 VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV  309 (510)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  309 (510)
                      +        .|....+++.+|.+|...|++++|+..+++++++        .|....++..++.++...++++++.+.
T Consensus       302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5        3556788999999999999999999999999988        455567888899999888888777643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.12  E-value=5.8e-10  Score=85.49  Aligned_cols=96  Identities=13%  Similarity=-0.004  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      .+..+..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++.+.       |
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P   82 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK----------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------P   82 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C
Confidence            456888899999999999999999998          88889999999999999999999999999999875       3


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      ....++..+|.++...|++++|+..++++++..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            334568999999999999999999999998753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=1.6e-09  Score=86.35  Aligned_cols=119  Identities=10%  Similarity=0.007  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (510)
                      +.....+..+|..+...|++++|+.+|++++..       .++++....++.++|.++...|++++|+..+++++..   
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   94 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---   94 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence            445678899999999999999999999999875       4444445678899999999999999999999999886   


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHH
Q 010446          406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  467 (510)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  467 (510)
                           .|....++..+|.++...|++++|+.+|++++.+        .|....++..++.+.
T Consensus        95 -----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           95 -----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS  143 (148)
T ss_dssp             -----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred             -----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence                 2344678899999999999999999999999985        233344455555544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=3.3e-09  Score=80.62  Aligned_cols=112  Identities=13%  Similarity=0.036  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                      +..++.+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+..++++++.        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            3457899999999999999999999998862        334678899999999999999999999999987        


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 010446          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (510)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (510)
                      .|....++..+|.++...|++++|...++++++.        .|....++..++.+
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~  115 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNM  115 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHh
Confidence            3456788999999999999999999999999874        23334455555554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=2.5e-09  Score=81.33  Aligned_cols=114  Identities=12%  Similarity=0.049  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (510)
                      .+..+..+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+..++++++..       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------   68 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------   68 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------
Confidence            45678899999999999999999999998764       2234568999999999999999999999999862       


Q ss_pred             ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (510)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (510)
                       |....++..+|.++...|++++|..+++++++.        .|.....+..++.+.
T Consensus        69 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           69 -PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  116 (118)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence             344678899999999999999999999999875        344556666666553

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=3e-09  Score=84.80  Aligned_cols=120  Identities=17%  Similarity=0.096  Sum_probs=99.0

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      .+..+..+..+|..+...|++++|+..+++++...    ++.+....++..+|.++...|++++|+.++++++...    
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----   95 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD----   95 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----
Confidence            45667889999999999999999999999998763    3334457779999999999999999999999999862    


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (510)
                          |....++..+|.++...|++++|+.++++++++        .|....++..++.+.
T Consensus        96 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           96 ----GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS  143 (148)
T ss_dssp             ----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred             ----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence                334678899999999999999999999999987        344455555555554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.06  E-value=1.7e-07  Score=93.31  Aligned_cols=230  Identities=10%  Similarity=0.069  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 010446          220 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV-EIYHRVITILELNRGTESADLVLPLFSLGSLFI  298 (510)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  298 (510)
                      ......|++++...        |.....+...+..+...|+.++|. ..|++|+..        .|.....+...+....
T Consensus       326 ~Rv~~~Ye~aL~~~--------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee  389 (679)
T 4e6h_A          326 ARMTYVYMQAAQHV--------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYE  389 (679)
T ss_dssp             HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence            34567788888753        445677888899999999999997 999999875        3444567788899999


Q ss_pred             HcCChHHHHHHHHHHHHHHHHHc------CCCC--------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010446          299 KEGKAVDAESVFSRILKIYTKVY------GEND--------GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (510)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (510)
                      ..|++++|...|++++.......      .+..        .....++...+.+..+.|..+.|...|.+|++...    
T Consensus       390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~----  465 (679)
T 4e6h_A          390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK----  465 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----
Confidence            99999999999999998642111      0111        12445677778888888999999999999987511    


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          365 MSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                        ...   ..++...|.+....| +.+.|..+|+++++...     ..   ...+...+......|+.+.|..+|++++.
T Consensus       466 --~~~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~---~~~w~~y~~fe~~~~~~~~AR~lferal~  532 (679)
T 4e6h_A          466 --LVT---PDIYLENAYIEYHISKDTKTACKVLELGLKYFA-----TD---GEYINKYLDFLIYVNEESQVKSLFESSID  532 (679)
T ss_dssp             --GSC---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TC---HHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred             --CCC---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----Cc---hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence              111   123445566666655 58999999999998752     22   33455667778888999999999999987


Q ss_pred             HHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ..     ++.......+......-...|+.+.+....+++.+..
T Consensus       533 ~~-----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          533 KI-----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             TS-----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             hc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            31     1112455667777777888999999999999988765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.05  E-value=6.3e-10  Score=102.32  Aligned_cols=144  Identities=17%  Similarity=0.083  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC--CC-------ChhHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--KT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHR  270 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  270 (510)
                      +..+..+..+|..+...|++++|+..|++++.+......  ..       ......++.++|.+|...|++++|+.++++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345666889999999999999999999999987422100  00       000114889999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH-HHHCCCHHHHH
Q 010446          271 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-KCANGNAEEAV  349 (510)
Q Consensus       271 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~  349 (510)
                      ++++        .|....+++++|.+|..+|++++|+..|++++++        .|....++..++.+ ....+..+++.
T Consensus       256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987        4566889999999999999999999999999875        24445667777777 44566778888


Q ss_pred             HHHHHHHHHH
Q 010446          350 ELYKKALRVI  359 (510)
Q Consensus       350 ~~~~~al~~~  359 (510)
                      ..|.+++...
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8998888764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.04  E-value=6.7e-10  Score=102.13  Aligned_cols=143  Identities=11%  Similarity=0.050  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcC--CCc--------hHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 010446          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK--DDE--------PLLDAILLHMGSMYSTLENYEKSMLVYQR  228 (510)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  228 (510)
                      +..+..+..+|..++..|++++|+..|++++.+.....  ...        .....+++++|.+|...|++++|+.++++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44566788999999999999999999999988752100  000        00113689999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH-HHHcCChHHHH
Q 010446          229 VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL-FIKEGKAVDAE  307 (510)
Q Consensus       229 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~  307 (510)
                      ++++        +|....+++++|.+|...|++++|+..|++++++        .|....++..++.+ ....+..+++.
T Consensus       256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9986        2455788999999999999999999999999887        34456677778877 44566778888


Q ss_pred             HHHHHHHHHH
Q 010446          308 SVFSRILKIY  317 (510)
Q Consensus       308 ~~~~~al~~~  317 (510)
                      ..|.+++...
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8888887753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.03  E-value=6.5e-09  Score=102.00  Aligned_cols=189  Identities=10%  Similarity=-0.023  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC----------hHHHHHHHH
Q 010446          118 LLELFNEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD----------LKFVQSLLD  186 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~  186 (510)
                      +..+..........|++ ++|+..+++++..          .|+...+|+..+.++...|+          +++++..++
T Consensus        28 y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~----------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~   97 (567)
T 1dce_A           28 YQSATQAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE   97 (567)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHH
Confidence            34444555556667766 5679999999998          99999999999999999988          899999999


Q ss_pred             HHHHhhhhcCCCchHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC-CHHH
Q 010446          187 MMSGIVDSLKDDEPLLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKK  263 (510)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~  263 (510)
                      +++...       |....+|+..+.++...|  ++++++..+.++++.        +|....+|...+.+....| .+++
T Consensus        98 ~~l~~~-------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~  162 (567)
T 1dce_A           98 SCLRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAE  162 (567)
T ss_dssp             HHHHHC-------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHhC-------CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHH
Confidence            998764       555667999999999999  779999999999986        3556788999999999999 9999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 010446          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------------GKAVDAESVFSRILKIYTKVYGENDGRVG  329 (510)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (510)
                      +++++.++++.        +|....+|+..+.++...              +.++++++++.+++.+        .|...
T Consensus       163 el~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~  226 (567)
T 1dce_A          163 ELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQ  226 (567)
T ss_dssp             HHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCS
T ss_pred             HHHHHHHHHHH--------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCc
Confidence            99999999875        677789999999998875              5578999999999886        34445


Q ss_pred             HHHHHHHHHHHHCCCHHH
Q 010446          330 MAMCSLAHAKCANGNAEE  347 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~  347 (510)
                      .+|+.++.++...+++++
T Consensus       227 saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          227 SAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHHHHSCCCCCSC
T ss_pred             cHHHHHHHHHhcCCCccc
Confidence            788889999988888555

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.98  E-value=3.3e-09  Score=80.79  Aligned_cols=90  Identities=20%  Similarity=0.162  Sum_probs=74.9

Q ss_pred             hhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010446          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK  253 (510)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  253 (510)
                      ..|++++|+..|++++...    .+.|....++..+|.++...|++++|+.+|+++++..        |....++.++|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--------PNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHHH
Confidence            4689999999999998752    2347788889999999999999999999999999872        444778999999


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHH
Q 010446          254 VLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      ++...|++++|+..+++++...
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999873

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.98  E-value=1.4e-09  Score=81.86  Aligned_cols=98  Identities=10%  Similarity=0.053  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      ..++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++++.        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            456778999999999999999999999987        3455778999999999999999999999999985        


Q ss_pred             ChH--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q 010446          325 DGR--VGMAMCSLAHAKCAN-GNAEEAVELYKKALRV  358 (510)
Q Consensus       325 ~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  358 (510)
                      .|.  ...++..+|.++... |++++|++++++++..
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            233  457889999999999 9999999999998875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.96  E-value=2.5e-08  Score=97.89  Aligned_cols=174  Identities=7%  Similarity=-0.054  Sum_probs=146.8

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHHHcCCCChHHH
Q 010446          260 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGENDGRVG  329 (510)
Q Consensus       260 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (510)
                      ..++|++.+.+++.+        .|....+|+..+.++...|+          +++++..++++++.        +|...
T Consensus        44 ~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y  107 (567)
T 1dce_A           44 LDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSY  107 (567)
T ss_dssp             CSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred             CCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCH
Confidence            346789999999987        67788999999999999988          89999999999875        56677


Q ss_pred             HHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHh
Q 010446          330 MAMCSLAHAKCANG--NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKY  406 (510)
Q Consensus       330 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  406 (510)
                      .+|...+.++...|  ++++++++++++++..       +..   ..+|...+.++...| .+++++++++++++     
T Consensus       108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-------~~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-----  172 (567)
T 1dce_A          108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERN---FHCWDYRRFVAAQAAVAPAEELAFTDSLIT-----  172 (567)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-----
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-------ccc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHH-----
Confidence            89999999999999  7799999999999982       222   567888999999999 89999999988876     


Q ss_pred             hCCCChhHHHHHHHHHHHHHhc--------------cCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC
Q 010446          407 KGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR  472 (510)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  472 (510)
                         .+|....+|...+.++...              +.+++|++++.+++.+        .|....+|..++.++...++
T Consensus       173 ---~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          173 ---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             ---TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCCC
T ss_pred             ---HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCCC
Confidence               3566778899999988874              6689999999999985        45566788999999999888


Q ss_pred             hHH
Q 010446          473 DKE  475 (510)
Q Consensus       473 ~~~  475 (510)
                      +++
T Consensus       242 ~~~  244 (567)
T 1dce_A          242 HDV  244 (567)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            665

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.96  E-value=1.4e-07  Score=93.82  Aligned_cols=229  Identities=10%  Similarity=-0.002  Sum_probs=170.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHH-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH
Q 010446          136 DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ-SLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS  214 (510)
Q Consensus       136 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (510)
                      .....|++++..          .|..+.+|...+......|+.++|. .+|++++...       |.....+...+....
T Consensus       327 Rv~~~Ye~aL~~----------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-------P~s~~Lwl~~a~~ee  389 (679)
T 4e6h_A          327 RMTYVYMQAAQH----------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-------PNSAVLAFSLSEQYE  389 (679)
T ss_dssp             HHHHHHHHHHHH----------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence            455678888876          6777889999999999999999997 9999998654       222344678888899


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhc------CCCC--------hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          215 TLENYEKSMLVYQRVINVLESRY------GKTS--------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      ..|++++|...|++++.......      .+..        .....++...+......|+.+.|...+.+|++..     
T Consensus       390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-----  464 (679)
T 4e6h_A          390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-----  464 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-----
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----
Confidence            99999999999999998642111      0110        1244567777888888999999999999998641     


Q ss_pred             CCCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                        .+.....+...|.+....+ +++.|..+|+++++.+     ++.+.   .+...+......|+.+.|..+|++++...
T Consensus       465 --~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-----p~~~~---~w~~y~~fe~~~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          465 --KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-----ATDGE---YINKYLDFLIYVNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             --GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred             --CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCchH---HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence              1122345556666666665 4899999999999974     23333   34555667778899999999999998752


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (510)
                             ++......++......-...|+.+.+..+.+++.+..
T Consensus       535 -------~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          535 -------SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             -------SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             -------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                   2223445677778888889999999999999988764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.94  E-value=1.8e-09  Score=81.24  Aligned_cols=97  Identities=22%  Similarity=0.158  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                      .++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.+++++++.        .
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~   70 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------I   70 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------S
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence            347889999999999999999999999862        333567899999999999999999999999986        3


Q ss_pred             cc--hHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 010446          284 AD--LVLPLFSLGSLFIKE-GKAVDAESVFSRILKI  316 (510)
Q Consensus       284 ~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  316 (510)
                      |.  ...++..+|.++... |++++|+.++++++..
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            44  678899999999999 9999999999998864

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.93  E-value=2.6e-09  Score=81.39  Aligned_cols=90  Identities=13%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH
Q 010446          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (510)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (510)
                      ..|++++|+..|+++++.       +...|..+.++..+|.++...|++++|+..+++++...       |....+++.+
T Consensus         2 ~~g~~~~A~~~~~~al~~-------~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l   67 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-------GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFY   67 (117)
T ss_dssp             -----CCCHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHH
Confidence            468999999999999875       23358889999999999999999999999999999875       3335568999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          210 GSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      |.++...|++++|+..+++++...
T Consensus        68 ~~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           68 AMVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.88  E-value=7.6e-09  Score=81.10  Aligned_cols=86  Identities=10%  Similarity=0.123  Sum_probs=76.2

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCCh----------HHHHHHHHHHHHhhhhcCCCc
Q 010446          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL----------KFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      +.+.+++|+..+++++++          .|..+.++.++|.++...|++          ++|+..|++++++.       
T Consensus        14 r~~~feeA~~~~~~Ai~l----------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------   76 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS----------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHhHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-------
Confidence            456789999999999998          899999999999999998876          49999999999885       


Q ss_pred             hHHHHHHHHHHHHHHhhh-----------cHHHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLE-----------NYEKSMLVYQRVINV  232 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~  232 (510)
                      |....+++++|.+|..+|           ++++|+.+|++|+++
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            556677999999999885           899999999999987

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.81  E-value=1.2e-08  Score=79.92  Aligned_cols=86  Identities=15%  Similarity=0.114  Sum_probs=75.7

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHHHcCCCCh
Q 010446          257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA----------VDAESVFSRILKIYTKVYGENDG  326 (510)
Q Consensus       257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~  326 (510)
                      +.+.+++|+..+++++++        .|..+.+++++|.++...+++          ++|+..|++++++        +|
T Consensus        14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP   77 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence            456799999999999998        677889999999999999876          4999999999986        46


Q ss_pred             HHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Q 010446          327 RVGMAMCSLAHAKCANG-----------NAEEAVELYKKALRV  358 (510)
Q Consensus       327 ~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~  358 (510)
                      ....+++++|.+|..+|           ++++|+.+|++|+++
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            67789999999999875           899999999999998

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.77  E-value=9.5e-08  Score=68.60  Aligned_cols=86  Identities=19%  Similarity=0.301  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      +....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++++     
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----   72 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----   72 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            456778999999999999999999999999987        3455788999999999999999999999999986     


Q ss_pred             CCCChHHHHHHHHHHHHHHHCC
Q 010446          322 GENDGRVGMAMCSLAHAKCANG  343 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g  343 (510)
                         .|....++.++|.++...|
T Consensus        73 ---~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 ---DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHC
T ss_pred             ---CCCCHHHHHHHHHHHHhcC
Confidence               2444567788888887654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.75  E-value=1.3e-07  Score=67.81  Aligned_cols=86  Identities=15%  Similarity=0.261  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      +....+++.+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.++++++++     
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----   72 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----   72 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            4556678999999999999999999999999862        334678899999999999999999999999987     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcC
Q 010446          280 GTESADLVLPLFSLGSLFIKEG  301 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g  301 (510)
                         .|....++.++|.++...|
T Consensus        73 ---~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 ---DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHC
T ss_pred             ---CCCCHHHHHHHHHHHHhcC
Confidence               4556778889999887654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.73  E-value=9.6e-09  Score=77.20  Aligned_cols=93  Identities=11%  Similarity=0.033  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                      +..+..+|.++...|++++|+..|+++++..        |....++.++|.++...|++++|+..+++++++        
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--------   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            3458899999999999999999999999862        344678999999999999999999999999986        


Q ss_pred             Ccch------HHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          283 SADL------VLPLFSLGSLFIKEGKAVDAESVFS  311 (510)
Q Consensus       283 ~~~~------~~~~~~la~~~~~~g~~~~A~~~~~  311 (510)
                      .|..      ..++..+|.++...|++++|+..++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            2333      6778899999999998887765544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.72  E-value=1.3e-08  Score=76.44  Aligned_cols=96  Identities=11%  Similarity=-0.004  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCC
Q 010446          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  452 (510)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (510)
                      ...+..+|.++...|++++|+..|++++.+        .|....++.++|.++...|++++|+..+++++.+     .++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC
Confidence            356788999999999999999999999986        3445678999999999999999999999999984     122


Q ss_pred             C---hhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446          453 D---QSISFPMLHLGITLYHLNRDKEAEKLVL  481 (510)
Q Consensus       453 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (510)
                      +   .....++..+|.++...|++++|+..++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            2   1126778899999999998888766544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.70  E-value=7.9e-08  Score=72.73  Aligned_cols=84  Identities=10%  Similarity=0.091  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH
Q 010446          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS  214 (510)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (510)
                      ++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++...       |....+++.+|.++.
T Consensus         2 ~~a~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~   64 (115)
T 2kat_A            2 QAITERLEAMLAQ----------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------PTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CCHHHHHHHHHTT----------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHH
Confidence            3577888888776          66778899999999999999999999999999874       333556899999999


Q ss_pred             hhhcHHHHHHHHHHHHHHHHH
Q 010446          215 TLENYEKSMLVYQRVINVLES  235 (510)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~  235 (510)
                      ..|++++|+..|++++++...
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           65 GQGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhccc
Confidence            999999999999999988654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=3.9e-07  Score=71.30  Aligned_cols=111  Identities=16%  Similarity=0.193  Sum_probs=93.6

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 010446          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (510)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (510)
                      .+++++|+.+|+++.+.       .++.   +.  +|.+|...+.+++|+.+|+++.+.          ....+++++|.
T Consensus         8 ~~d~~~A~~~~~~aa~~-------g~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~   65 (138)
T 1klx_A            8 KKDLKKAIQYYVKACEL-------NEMF---GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD   65 (138)
T ss_dssp             HHHHHHHHHHHHHHHHT-------TCTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcC-------CCHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence            46889999999999864       2222   22  999999999999999999999875          23688999999


Q ss_pred             HHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 010446          296 LFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV  358 (510)
Q Consensus       296 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  358 (510)
                      +|..    .+++++|+.+|+++.+.       .   ...++.+||.+|..    .+++++|+.+|+++.+.
T Consensus        66 ~y~~G~g~~~d~~~A~~~~~~Aa~~-------g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           66 FYENGKYVKKDLRKAAQYYSKACGL-------N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHcC-------C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            9998    89999999999999873       2   24678999999999    89999999999999875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.65  E-value=1.8e-07  Score=70.72  Aligned_cols=84  Identities=25%  Similarity=0.196  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh
Q 010446          390 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  469 (510)
Q Consensus       390 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  469 (510)
                      ++|+..|++++..        .|....++..+|.+|...|++++|+.+|++++.+        .|....++..+|.++..
T Consensus         2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence            3577778877763        3555678999999999999999999999999985        45567788999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHH
Q 010446          470 LNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       470 ~g~~~~A~~~~~~al~~~~~  489 (510)
                      .|++++|..+|++++++...
T Consensus        66 ~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccc
Confidence            99999999999999998765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.65  E-value=3.9e-07  Score=71.34  Aligned_cols=110  Identities=17%  Similarity=0.131  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 010446          343 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  422 (510)
Q Consensus       343 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  422 (510)
                      +++++|+.+|+++.+.       + ++ .   +.  +|.+|...+..++|+.+|+++.+.          ....++.+||
T Consensus         9 ~d~~~A~~~~~~aa~~-------g-~~-~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg   64 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-------N-EM-F---GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLG   64 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-------T-CT-T---HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcC-------C-CH-h---hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHH
Confidence            4678999999998865       2 11 1   11  899999999999999999999763          2357889999


Q ss_pred             HHHHh----ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 010446          423 ASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  486 (510)
Q Consensus       423 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  486 (510)
                      .+|..    .+++++|+.+|+++.+.          ....++.+||.+|..    .+++++|..+|+++.+.
T Consensus        65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           65 DFYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            99998    89999999999999872          234678999999999    99999999999999874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.63  E-value=2e-07  Score=68.38  Aligned_cols=72  Identities=18%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010446          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (510)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  490 (510)
                      .|....++..+|.+|...|++++|+.+|++++++        .|....++..+|.+|...|++++|+..|++++++....
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            3556678999999999999999999999999985        45566789999999999999999999999999987653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.61  E-value=3.7e-06  Score=81.16  Aligned_cols=167  Identities=12%  Similarity=-0.007  Sum_probs=125.2

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHH
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---------AVDAESVFSRILKIY  317 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~  317 (510)
                      .+..+-..+.+.|+.++|+++|+++.+.       .......+|+.+-.++...+.         .++|.++|++.... 
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN-------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH-------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence            3555668889999999999999998764       222345677777777766554         56777777766542 


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (510)
                          | -.| ...+|+.+...|.+.|++++|..++++....       +-.+.  ..+|..+...|.+.|+.++|.++++
T Consensus       100 ----G-~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-------g~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A          100 ----K-VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-------GIQPR--LRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             ----T-CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TCCCC--HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCc--cceehHHHHHHHHCCCHHHHHHHHH
Confidence                1 122 3467888999999999999999999987653       22222  3467889999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                      +..+.      .-.|+ ..++..+...|.+.|+.++|.++++++.+
T Consensus       165 ~M~~~------G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          165 HMVES------EVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhc------CCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            87642      12333 35788899999999999999999998765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.61  E-value=3.3e-06  Score=81.44  Aligned_cols=167  Identities=9%  Similarity=-0.004  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHH
Q 010446          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---------AEEAVELYKKALRVI  359 (510)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~  359 (510)
                      .+..+-..+.+.|+.++|+.+|+++.+.     | -.| ...+|+.+-.+|...+.         .++|.++|++.... 
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----G-v~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----G-VQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----T-CCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence            3455667889999999999999988763     1 122 23456666666665443         67888888876543 


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (510)
                            +..+.  ..+|..+...|.+.|++++|..++++....      .-.|+ ..+|+.+-..|.+.|+.++|.++|+
T Consensus       100 ------G~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A          100 ------KVVPN--EATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPR-LRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             ------TCCCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCc-cceehHHHHHHHHCCCHHHHHHHHH
Confidence                  22222  236788999999999999999999886542      12333 4678889999999999999999999


Q ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                      ++.+.      .-.|+ ..++..+-.+|.+.|+.++|.+++++..+
T Consensus       165 ~M~~~------G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          165 HMVES------EVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhc------CCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            98762      22333 35788899999999999999999998754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.60  E-value=6.2e-07  Score=65.69  Aligned_cols=71  Identities=14%  Similarity=0.211  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 010446          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (510)
                      |....+++.+|.+|...|++++|+.++++++++        .|....++..+|.+|...|++++|+..+++++++....
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            455678999999999999999999999999997        45667899999999999999999999999999986543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.59  E-value=0.00013  Score=70.27  Aligned_cols=303  Identities=9%  Similarity=-0.049  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHhhhhcCCC
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD-LKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ..++.+...+-.|+++.+..+|++++..          .| ...+|..........|+ .+.....|+.++...   |.+
T Consensus        16 ~vyer~l~~~P~~~~e~~~~iferal~~----------~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v---g~d   81 (493)
T 2uy1_A           16 AIMEHARRLYMSKDYRSLESLFGRCLKK----------SY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF---ENY   81 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHSTT----------CC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS---TTC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHhcc----------CC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc---CCC
Confidence            3444554555558999999999999864          33 44456555555555553 345566777777654   222


Q ss_pred             chHHHHHHHHHHHHHH----hhhcHHHHHHHHHHHHHHHHHhcCCCChhHHH----------------------------
Q 010446          199 EPLLDAILLHMGSMYS----TLENYEKSMLVYQRVINVLESRYGKTSILLVT----------------------------  246 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------------------  246 (510)
                       +....+|......+.    .+|+.+.+...|++++..-    ..+......                            
T Consensus        82 -~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P----~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~a  156 (493)
T 2uy1_A           82 -WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP----MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSS  156 (493)
T ss_dssp             -TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC----CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh----hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHH
Confidence             222233444444432    3577888888888887620    000000000                            


Q ss_pred             -----------------HHHHHHHHHhhcCC---------HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc
Q 010446          247 -----------------SLLGMAKVLGSIGR---------AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE  300 (510)
Q Consensus       247 -----------------~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  300 (510)
                                       .+.....  ...++         .+.....|++++..        .|.....+...+..+...
T Consensus       157 r~~y~~~~~~~~~~s~~~W~~y~~--~E~~~~~~~~~~~~~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~  226 (493)
T 2uy1_A          157 FQRYQQIQPLIRGWSVKNAARLID--LEMENGMKLGGRPHESRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGI  226 (493)
T ss_dssp             HHHHHHHHHHHHTCSHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHH--HHhcCCccCcchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHc
Confidence                             1111111  11121         23345566666654        234467788888899999


Q ss_pred             CChHHHHHHHHHHHHHHHHHcCCCChH-------------------------------------HHHHHHHHHHHHHHCC
Q 010446          301 GKAVDAESVFSRILKIYTKVYGENDGR-------------------------------------VGMAMCSLAHAKCANG  343 (510)
Q Consensus       301 g~~~~A~~~~~~al~~~~~~~~~~~~~-------------------------------------~~~~~~~la~~~~~~g  343 (510)
                      |+.++|...|++|+.. .     ....                                     ....+...+......+
T Consensus       227 ~~~~~ar~i~erAi~~-P-----~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~  300 (493)
T 2uy1_A          227 GQKEKAKKVVERGIEM-S-----DGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR  300 (493)
T ss_dssp             TCHHHHHHHHHHHHHH-C-----CSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhC-C-----CcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence            9999999999999875 1     1111                                     1122333333333455


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 010446          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  422 (510)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  422 (510)
                      ..+.|...|+++ ..       .+.   ...++...|.+....+ +.+.|..+|+.++...     ++.+.   .+...+
T Consensus       301 ~~~~AR~i~~~A-~~-------~~~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~---~~~~yi  361 (493)
T 2uy1_A          301 GLELFRKLFIEL-GN-------EGV---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTL---LKEEFF  361 (493)
T ss_dssp             CHHHHHHHHHHH-TT-------SCC---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHH---HHHHHH
T ss_pred             CHHHHHHHHHHh-hC-------CCC---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHH---HHHHHH
Confidence            566666666665 11       111   1123333444444444 4777777777766632     12222   233345


Q ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010446          423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (510)
Q Consensus       423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  488 (510)
                      ......|+.+.|...|+++.         .   ....+......-...|+.+.+...+++++....
T Consensus       362 d~e~~~~~~~~aR~l~er~~---------k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~  415 (493)
T 2uy1_A          362 LFLLRIGDEENARALFKRLE---------K---TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK  415 (493)
T ss_dssp             HHHHHHTCHHHHHHHHHHSC---------C---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH---------H---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence            55566677777777666651         1   123344444445566888888888888877554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.42  E-value=0.00015  Score=66.53  Aligned_cols=212  Identities=9%  Similarity=0.002  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS-IGRAKKAVEIYHRVITILELNRGTE  282 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  282 (510)
                      .+...+|..|...|++++-.+++......+...   .....+.....+-..+.. -+..+.-++...++++..+..    
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----   92 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----   92 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence            347899999999999999888887765544322   122345555555555544 355666677788888776542    


Q ss_pred             CcchHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          283 SADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       283 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                      ......  .-..+|..|...|+|.+|.+.+.+.+.-+++.  ++......++.....+|...+++.++..++.++.....
T Consensus        93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~  170 (394)
T 3txn_A           93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN  170 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence            122222  33489999999999999999999999887664  23456778888889999999999999999999998876


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (510)
                      ..   .+++...+.+...-|..+. ..++|.+|..+|-++..-+...   ..+....+...++.+-...++
T Consensus       171 ai---~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          171 AI---YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HS---CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred             cC---CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence            53   3455566777777888888 8999999999999987655432   233333334444444444444

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.35  E-value=0.00022  Score=65.39  Aligned_cols=188  Identities=13%  Similarity=0.080  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      .+...+|..|...|++++-.+++......+....   ....+.....+-..+.. -+..+.-.+...++++.++..    
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----   92 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS---KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----   92 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence            4577899999999999998888877655432211   12223333444444433 345566677777777776542    


Q ss_pred             ChHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          325 DGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       325 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                      ......  .-..+|.+|...|+|.+|.+.+.+..+-+++.    .+......++..-..+|...+++.++..++.++...
T Consensus        93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~----dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A           93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL----DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS----SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            223323  34589999999999999999999999887763    346677888888999999999999999999999988


Q ss_pred             HHHhhCCCChh-HHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHH
Q 010446          403 TEKYKGKEHPS-FVTHLLNLAASYS-RSKNFVEAERLLRICLDIMT  446 (510)
Q Consensus       403 ~~~~~~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~  446 (510)
                      .....  .+|. .+.....-|..+. ..++|.+|..+|-++..-+.
T Consensus       169 ~~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          169 ANAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             hccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            76552  3443 3445556677788 89999999999999876543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.34  E-value=1.9e-06  Score=62.81  Aligned_cols=87  Identities=11%  Similarity=0.112  Sum_probs=67.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH-HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT-HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (510)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (510)
                      ...|..+...|++++|+..+++++..        .|.... ++..+|.+|...|++++|+..|++++.+        +|.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence            56889999999999999999999885        344556 8999999999999999999999999985        233


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      ...++..        +.+.+|...|+++....
T Consensus        68 ~~~~~~~--------~~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           68 SPALQAR--------KMVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             STHHHHH--------HHHHHHHHHHCCTTHHH
T ss_pred             cHHHHHH--------HHHHHHHHHHHHHhccC
Confidence            3333322        55667777777776654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.32  E-value=2e-06  Score=62.71  Aligned_cols=87  Identities=14%  Similarity=0.174  Sum_probs=69.1

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVA-ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      +..+..+...|++++|+..++++++.          .|..+. ++..+|.++...|++++|+..|++++.+.    ++.+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~   69 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT----------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN----PDSP   69 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH----------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcH
Confidence            45788889999999999999999987          677777 99999999999999999999999998875    2222


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (510)
                      ..   +..        +.+.++...|+++....
T Consensus        70 ~~---~~~--------~~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           70 AL---QAR--------KMVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             HH---HHH--------HHHHHHHHHHCCTTHHH
T ss_pred             HH---HHH--------HHHHHHHHHHHHHhccC
Confidence            22   211        67777888887776654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.30  E-value=0.00015  Score=69.88  Aligned_cols=284  Identities=12%  Similarity=0.036  Sum_probs=159.2

Q ss_pred             HcC-ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446          130 MMG-NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (510)
Q Consensus       130 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (510)
                      ..| ++..|...|++++...          |.               |+++.+..+|++++...    + +..   +|..
T Consensus         6 ~~~~~i~~aR~vyer~l~~~----------P~---------------~~~e~~~~iferal~~~----p-s~~---LW~~   52 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLY----------MS---------------KDYRSLESLFGRCLKKS----Y-NLD---LWML   52 (493)
T ss_dssp             ------CCHHHHHHHHHHHH----------HT---------------TCHHHHHHHHHHHSTTC----C-CHH---HHHH
T ss_pred             HcCcchHHHHHHHHHHHHHC----------CC---------------CCHHHHHHHHHHHhccC----C-CHH---HHHH
Confidence            456 4888999999988762          21               88999999999998743    1 222   2333


Q ss_pred             HHHHHHhhh-cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHh----hcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          209 MGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTES  283 (510)
Q Consensus       209 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (510)
                      ........+ ..+.....|+.++...    |. ++.....+......+.    ..|+.+.+...|++++..-    ..+.
T Consensus        53 Y~~f~~~~~~~~~~i~~~fe~al~~v----g~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P----~~~~  123 (493)
T 2uy1_A           53 YIEYVRKVSQKKFKLYEVYEFTLGQF----EN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP----MGSL  123 (493)
T ss_dssp             HHHHHHHHC----CTHHHHHHHHHHS----TT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC----CTTH
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHc----CC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh----hhhH
Confidence            333333333 2344566677776642    21 2222344444444433    2456777888888886520    0000


Q ss_pred             cchHH---------------------------------------------HHHHHHHHHHHcCC---------hHHHHHH
Q 010446          284 ADLVL---------------------------------------------PLFSLGSLFIKEGK---------AVDAESV  309 (510)
Q Consensus       284 ~~~~~---------------------------------------------~~~~la~~~~~~g~---------~~~A~~~  309 (510)
                      .....                                             .+..  .+-...++         .+.....
T Consensus       124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~--y~~~E~~~~~~~~~~~~~~Rv~~~  201 (493)
T 2uy1_A          124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAAR--LIDLEMENGMKLGGRPHESRMHFI  201 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHH--HHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHH--HHHHHhcCCccCcchhhHHHHHHH
Confidence            00000                                             1111  11111121         1223445


Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--------CC---------------
Q 010446          310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY--------MS---------------  366 (510)
Q Consensus       310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~---------------  366 (510)
                      |++++...        |.....+...+..+...|+.++|...|++++.. .....        ..               
T Consensus       202 ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~  272 (493)
T 2uy1_A          202 HNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG  272 (493)
T ss_dssp             HHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred             HHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence            55555431        233567788888899999999999999999976 32100        00               


Q ss_pred             -------CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc-CHHHHHHHH
Q 010446          367 -------LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAERLL  438 (510)
Q Consensus       367 -------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~  438 (510)
                             ..+.....++...+....+.++.+.|...|+++ .    .  +.  ....++...|.+....+ +.+.|...|
T Consensus       273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~--~~--~~~~v~i~~A~lE~~~~~d~~~ar~if  343 (493)
T 2uy1_A          273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----N--EG--VGPHVFIYCAFIEYYATGSRATPYNIF  343 (493)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----T--SC--CCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----C--CC--CChHHHHHHHHHHHHHCCChHHHHHHH
Confidence                   000111234455555566677788888888887 2    1  11  12345555566666556 699999999


Q ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                      +.+++..     ++.|..   +...+......|+.+.|...|+++
T Consensus       344 e~al~~~-----~~~~~~---~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          344 SSGLLKH-----PDSTLL---KEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHC-----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHC-----CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999842     334433   444566777889999998887764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.23  E-value=2.1e-05  Score=57.73  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                      .+.+|..++..|+|..|+.+|++|++....... .......++..+|.++..+|++++|+.++++++++        .|.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P~   78 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DPE   78 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCC
Confidence            678999999999999999999999988654211 12356788999999999999999999999999987        444


Q ss_pred             hHHHHHHHH
Q 010446          286 LVLPLFSLG  294 (510)
Q Consensus       286 ~~~~~~~la  294 (510)
                      ...+..+++
T Consensus        79 ~~~~~~n~~   87 (104)
T 2v5f_A           79 HQRANGNLK   87 (104)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHhhHH
Confidence            455566655

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.18  E-value=5.1e-05  Score=55.65  Aligned_cols=71  Identities=7%  Similarity=-0.038  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      +.-.+.+|..++..|+|..|+.+++.++...............++..+|.++..+|++++|+.++++++.+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            34567899999999999999999999998764422223455677899999999999999999999999986

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.15  E-value=5.1e-05  Score=68.36  Aligned_cols=134  Identities=14%  Similarity=0.045  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh---C-ChHHHHHHHHHHHHhhh
Q 010446          121 LFNEVKSMIMMGN---KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---G-DLKFVQSLLDMMSGIVD  193 (510)
Q Consensus       121 l~~~~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~~~~~~~  193 (510)
                      ++-++..+...++   ..+|+.+|++++++          +|+.+.++..++.+|...   + ........+..+.....
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l----------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS----------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            4445655555444   58899999999998          888888888777777531   1 11122222233332221


Q ss_pred             hcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (510)
                      . ....|..+.++..++..+...|++++|+..+++++.+.        +. ..++..+|.++...|++++|++.|.+|+.
T Consensus       269 a-~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          269 T-LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             T-CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             h-cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            1 12224445557788888888899999999999999972        22 45678899999999999999999999999


Q ss_pred             H
Q 010446          274 I  274 (510)
Q Consensus       274 ~  274 (510)
                      +
T Consensus       339 L  339 (372)
T 3ly7_A          339 L  339 (372)
T ss_dssp             H
T ss_pred             c
Confidence            8

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.15  E-value=0.00034  Score=60.34  Aligned_cols=101  Identities=16%  Similarity=0.091  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHHHHhh-----cC------CHHHHHHHHHHHHHHHHHhcCCCCcc--hHHHHHHHHHHHHHc-----CCh
Q 010446          242 ILLVTSLLGMAKVLGS-----IG------RAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKE-----GKA  303 (510)
Q Consensus       242 ~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~  303 (510)
                      +..+..++..|.+...     .|      ...+|...+++++++        +|.  ...++..+|.+|...     |+.
T Consensus       149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~  220 (301)
T 3u64_A          149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGM  220 (301)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCH
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCH
Confidence            3445555555555432     23      356788888899888        444  567999999999995     999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q 010446          304 VDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCA-NGNAEEAVELYKKALRV  358 (510)
Q Consensus       304 ~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  358 (510)
                      ++|..+|++|+++.        |. ...++...|..+.. .|++++|..++++++..
T Consensus       221 ekA~~~ferAL~Ln--------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          221 EKAHTAFEHLTRYC--------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHHHC--------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC--------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            99999999999972        32 24667778888887 59999999999999987

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.05  E-value=0.00019  Score=64.74  Aligned_cols=137  Identities=15%  Similarity=0.100  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHhhCC---hHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHHH
Q 010446          162 VAILDIIALGYVYIGD---LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN----YEKSMLVYQRVINVLE  234 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~~  234 (510)
                      +.-++..|..+...++   ..+|+.+|++++++.       |..+.++-.++.+|.....    ......-..+++....
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-------P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-------PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            3344555666665554   478999999999875       5555555555555542211    1122222333433221


Q ss_pred             HhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (510)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (510)
                      .  ....+..+.++..++..+...|++++|+..+++|+.+       + +. ...+..+|.++...|++++|++.|.+|+
T Consensus       269 a--~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-------n-~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          269 T--LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------E-MS-WLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             T--CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------C-CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             h--cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------C-CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            1  1223455677888888888899999999999999998       2 32 5677889999999999999999999999


Q ss_pred             HH
Q 010446          315 KI  316 (510)
Q Consensus       315 ~~  316 (510)
                      .+
T Consensus       338 rL  339 (372)
T 3ly7_A          338 NL  339 (372)
T ss_dssp             HH
T ss_pred             hc
Confidence            86

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.96  E-value=0.00027  Score=55.05  Aligned_cols=108  Identities=11%  Similarity=0.074  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc-
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE-  199 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-  199 (510)
                      +++.++.++..|.|+.|+-+...++.+..... ..........++..+|..++..|+|..|...|++++...+.+.... 
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            67788899999999999999999888744310 0112345678899999999999999999999999988776532221 


Q ss_pred             -----------------hHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 010446          200 -----------------PLLDAILLHMGSMYSTLENYEKSMLVYQRV  229 (510)
Q Consensus       200 -----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  229 (510)
                                       +.-.++.+.++.||...|++++|+..++..
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                             112356789999999999999999987653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.95  E-value=0.0033  Score=54.26  Aligned_cols=85  Identities=11%  Similarity=0.105  Sum_probs=70.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHhcCCCCcc-hHHHHH
Q 010446          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-----GRAKKAVEIYHRVITILELNRGTESAD-LVLPLF  291 (510)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~  291 (510)
                      ....|...+++++++.      .......++..+|.+|...     |+.++|..+|++++++        +|. ...+++
T Consensus       178 ~l~~A~a~lerAleLD------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~v  243 (301)
T 3u64_A          178 TVHAAVMMLERACDLW------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHHI  243 (301)
T ss_dssp             HHHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHHH
T ss_pred             hHHHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHHH
Confidence            4578888888888872      1223567899999999995     9999999999999999        454 378888


Q ss_pred             HHHHHHHH-cCChHHHHHHHHHHHHH
Q 010446          292 SLGSLFIK-EGKAVDAESVFSRILKI  316 (510)
Q Consensus       292 ~la~~~~~-~g~~~~A~~~~~~al~~  316 (510)
                      ..|..+.. .|++++|..++++++..
T Consensus       244 ~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          244 TYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            99999988 59999999999999984

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.95  E-value=0.00033  Score=54.52  Aligned_cols=128  Identities=15%  Similarity=0.035  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010446          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (510)
                      .++..-...+...|.|+.|+-....++.+..... ..-.+.....++..+|++++..|+|..|...|++++...+.....
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455566678889999999999999988875420 011244566788999999999999999999999999887643211


Q ss_pred             -----------------CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHH
Q 010446          410 -----------------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  467 (510)
Q Consensus       410 -----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  467 (510)
                                       +.+...++.+.++.||.+.|++++|+..++..         |.......+...||.+|
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence                             11223467889999999999999999987643         22233344556666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.91  E-value=0.00014  Score=51.85  Aligned_cols=67  Identities=13%  Similarity=0.100  Sum_probs=58.3

Q ss_pred             cchHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          284 ADLVLPLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      |.....+..+|.++...++   .++|...+++++++        +|....++..+|..++..|+|++|+.+++++++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4557788889999876666   79999999999996        5677788999999999999999999999999876

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.87  E-value=0.011  Score=55.83  Aligned_cols=231  Identities=13%  Similarity=0.040  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (510)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (510)
                      ..++..+..+..+. .|+++.|++.+-..-    +......+.+....++..+...+...|+++...+++.......   
T Consensus        15 ~~~~~~~~~~~~l~-~~~~~~a~e~ll~lE----K~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr---   86 (445)
T 4b4t_P           15 QILKEEFPKIDSLA-QNDCNSALDQLLVLE----KKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH---   86 (445)
T ss_dssp             -------------C-HHHHHHHHHHHHHHH----HHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT---
T ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHH----HHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---
Confidence            34444444454443 367788877543222    2222244556667778888889999999998877665433321   


Q ss_pred             CCCchHHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010446          196 KDDEPLLDAILLHMGSMYS-TLENYEKSMLVYQRVINVLESRYGKT---SILLVTSLLGMAKVLGSIGRAKKAVEIYHRV  271 (510)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  271 (510)
                      +........ ......-|. .....+.  ......+..........   ....+.....++.+|...|++.+|...+...
T Consensus        87 ~qlk~ai~~-~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l  163 (445)
T 4b4t_P           87 GQLKLSIQY-MIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCEL  163 (445)
T ss_dssp             TTSHHHHHH-HHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hhhHHHHHH-HHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            222122222 222221122 1121111  11112222111111111   1135677788999999999999999999887


Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHCCCHHHHHH
Q 010446          272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVE  350 (510)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~  350 (510)
                      ..-...  ..+.......+.....+|...+++.+|...+.++.......  ..+|. ....+...|.++...++|.+|..
T Consensus       164 ~~Et~~--~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~  239 (445)
T 4b4t_P          164 QVETYG--SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQ  239 (445)
T ss_dssp             HHHHCS--SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHh--cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            533211  12334556778888999999999999999999986544332  23343 45667778999999999999999


Q ss_pred             HHHHHHHHHHh
Q 010446          351 LYKKALRVIKD  361 (510)
Q Consensus       351 ~~~~al~~~~~  361 (510)
                      +|..+......
T Consensus       240 ~y~e~~~~~~~  250 (445)
T 4b4t_P          240 YLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhcccc
Confidence            99999887654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.83  E-value=0.0011  Score=51.40  Aligned_cols=68  Identities=10%  Similarity=0.050  Sum_probs=58.9

Q ss_pred             cchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          284 ADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      +....+.+++|+++.+.+   +.++++.++++.++.       +.| ....+++++|..+.+.|+|++|..++++++++
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            356788999999999988   666999999988874       235 56788999999999999999999999999998

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.81  E-value=0.00018  Score=51.19  Aligned_cols=66  Identities=11%  Similarity=0.061  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          243 LLVTSLLGMAKVLGSIGR---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      .....+..+|.+++..++   .++|..++++++++        +|....++..+|..+...|+|++|+.+++++++.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345677888888876665   79999999999998        6778899999999999999999999999999874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.77  E-value=0.001  Score=51.45  Aligned_cols=84  Identities=12%  Similarity=0.012  Sum_probs=65.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 010446          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGTESA-DLVLPLFSL  293 (510)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l  293 (510)
                      ....+.+.|.+.++.        .+....+.+++|.++...+   +.++++.+++..++.       +.| ....+++++
T Consensus        13 ~l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~L   77 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYL   77 (152)
T ss_dssp             HHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHH
Confidence            344555555555431        1245678899999999988   667999999998886       224 567899999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHH
Q 010446          294 GSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      |..+.+.|+|++|.+++++++++
T Consensus        78 Av~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           78 AVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhc
Confidence            99999999999999999999996

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.034  Score=52.47  Aligned_cols=218  Identities=12%  Similarity=0.051  Sum_probs=133.2

Q ss_pred             hCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010446          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (510)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (510)
                      .|+++.|++.+....+..+. +.+.+....++..+..++...|+++...+++.-...    ..+. .+...........-
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~-~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~  102 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQ-ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVME  102 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS-SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhh-ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHH
Confidence            46788888777555544433 444455566678888899999999887665542211    1111 11111111111111


Q ss_pred             Hh-hcCCHHHHHHHHHHHHHHHHHhcCCC-C--cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC-hHHH
Q 010446          255 LG-SIGRAKKAVEIYHRVITILELNRGTE-S--ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND-GRVG  329 (510)
Q Consensus       255 ~~-~~g~~~~A~~~~~~al~~~~~~~~~~-~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~  329 (510)
                      |. .....+.  ......++......... .  ...+.....|+.+|...|++.+|...+.....   +.++..+ ....
T Consensus       103 ~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~kv  177 (445)
T 4b4t_P          103 YLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEKI  177 (445)
T ss_dssp             HHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHHH
T ss_pred             HHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHHH
Confidence            21 1222111  11112222111111100 1  12445667899999999999999999987753   2233332 3356


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010446          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (510)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (510)
                      ..+.....+|...+++..|...++++.......   .+.+......+...|.++...++|.+|-.+|.++.......
T Consensus       178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~---~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~  251 (445)
T 4b4t_P          178 QFILEQMELSILKGDYSQATVLSRKILKKTFKN---PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK  251 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc---CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence            778888999999999999999999986544432   34445566777889999999999999999999988765443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.15  E-value=0.011  Score=45.04  Aligned_cols=103  Identities=11%  Similarity=0.013  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHcCCh------HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446          375 MRIDLAELLHIVGRG------QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (510)
Q Consensus       375 ~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (510)
                      .+........+.|+.      ++-++.|++|+..............+..+...|.. ...++.++|.+.|+.++.+    
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~----   89 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN----   89 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH----
Confidence            334555666666887      77778888887765332222345566677777755 6779999999999999985    


Q ss_pred             hCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                          |...+.++...|..-.++|+...|.+.+.+++.+
T Consensus        90 ----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           90 ----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             ----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence                3445888999999999999999999999999873

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.79  E-value=0.087  Score=39.10  Aligned_cols=67  Identities=10%  Similarity=0.042  Sum_probs=53.6

Q ss_pred             chHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          285 DLVLPLFSLGSLFIKEGKAVD---AESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ....+.+++|+++....+...   ++.+++..       +..+.| ..-..++.+|..+.+.|+|++|..+++..+++
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l-------~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL-------LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH-------TTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-------HhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            456888999999999887765   55555444       333435 57788999999999999999999999999998

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.75  E-value=0.03  Score=42.65  Aligned_cols=104  Identities=16%  Similarity=0.168  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhhcCCH------HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          246 TSLLGMAKVLGSIGRA------KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (510)
                      +.+..........|+.      ++-++.|++|+..............+..+...|.. ...++.++|...|+.++.+   
T Consensus        14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---   89 (161)
T 4h7y_A           14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---   89 (161)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence            4445555555666887      77788888888764322222334445566666654 5669999999999999986   


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                           +...+.++...|..-.++|+...|...+.+++..
T Consensus        90 -----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           90 -----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             -----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence                 2223788888899999999999999999999986

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.065  Score=50.39  Aligned_cols=110  Identities=15%  Similarity=0.092  Sum_probs=88.7

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010446          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (510)
                      .....++..+|..|...|++++|.+.|.++...+.     ........+..+..++...+++..+..++.++......  
T Consensus       128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--  200 (429)
T 4b4t_R          128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--  200 (429)
T ss_dssp             CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--
Confidence            34566788999999999999999999999877542     23345677888889999999999999999999887654  


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                        ++++..........|.++...++|.+|-.+|-++...
T Consensus       201 --~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          201 --GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             --CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence              4556666666677788888999999999999877654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.36  E-value=0.044  Score=56.12  Aligned_cols=105  Identities=9%  Similarity=-0.084  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      .....++.+-..|++.|+.++|..++.+..+...+...+    ...+|+.+...|.+.|+.++|.++++++.+.      
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P----dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------  194 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL----TLDMYNAVMLGWARQGAFKELVYVLFMVKDA------  194 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC----CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence            344458899999999999999999998876543332222    2568999999999999999999999998654      


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKA-VDAESVFSRILKI  316 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  316 (510)
                       .......+|+.+-.++.+.|+. ++|.+++++..+.
T Consensus       195 -G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          195 -GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             -TCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             -CCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence             2333467888888899999985 7888999887653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.28  E-value=0.22  Score=36.97  Aligned_cols=69  Identities=13%  Similarity=0.009  Sum_probs=54.5

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHH---HHHHHHHHHHhhhhcCCCch-HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          158 GIEEVAILDIIALGYVYIGDLKF---VQSLLDMMSGIVDSLKDDEP-LLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      .+....+.+.+|+++....+...   ++.+++....      .+.| ....+++.+|..+++.|+|++|..+++..+++
T Consensus        31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34566788999999999887776   6666665443      2224 56778999999999999999999999999987

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.27  E-value=0.056  Score=55.40  Aligned_cols=106  Identities=10%  Similarity=-0.009  Sum_probs=81.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (510)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (510)
                      ......+++.+...|.+.|+.++|..++.+......+-   -.|+ ..+|+.|...|.+.|+.++|.++|+++.+.    
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----  194 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---KLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA----  194 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---TTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---CCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence            34445678999999999999999999998765443322   1233 368999999999999999999999998762    


Q ss_pred             hCCCChhhHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 010446          449 VGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALY  485 (510)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~  485 (510)
                        .-.|+. .+|..+-.++.+.|+. ++|.+++++..+
T Consensus       195 --G~~PDv-vTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          195 --GLTPDL-LSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             --TCCCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             --CCCCcH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence              233444 5688888889999985 788899988765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.20  E-value=0.12  Score=53.27  Aligned_cols=75  Identities=12%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 010446          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  286 (510)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (510)
                      ..+...+...|.+++|+...+....                   ........|++++|.+..+.             ...
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~~-------------------~f~~~l~~~~~~~A~~~~~~-------------~~~  680 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQDQ-------------------KFELALKVGQLTLARDLLTD-------------ESA  680 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHHH-------------------HHHHHHHHTCHHHHHHHHTT-------------CCC
T ss_pred             HHHHHHHHhCCChHHheecCCCcch-------------------heehhhhcCCHHHHHHHHHh-------------hCc
Confidence            4555667778888887765432110                   12234568888888876432             122


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          287 VLPLFSLGSLFIKEGKAVDAESVFSRI  313 (510)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (510)
                      ...+..+|..+...|+++.|+..|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            467888999999999999999999876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.00  E-value=0.24  Score=51.03  Aligned_cols=46  Identities=13%  Similarity=0.226  Sum_probs=28.6

Q ss_pred             HHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 010446          172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRV  229 (510)
Q Consensus       172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  229 (510)
                      ....|++++|.+..+.         .+.+   ..|..+|..+...|+++.|+.+|.++
T Consensus       662 ~l~~~~~~~A~~~~~~---------~~~~---~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD---------ESAE---MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTT---------CCCH---HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHh---------hCcH---hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3456666666655422         1112   23677777777888888888777765

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.069  Score=50.20  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ....|..+...|++++|.+.|.++.+..       .........+..+..++...+|+..+..++.++...... +++..
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~-------~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-~~d~~  205 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKA-------ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-GGDWE  205 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHH-------TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-CCCTH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-CCCHH
Confidence            5568899999999999999999987652       234567788888899999999999999999999887765 33333


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      .........|.++...++|.+|..+|..+...
T Consensus       206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            44455566788888999999999999887654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=95.91  E-value=0.86  Score=40.45  Aligned_cols=157  Identities=15%  Similarity=0.124  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH-------H-HHHHHHHcCCCChHHHHHHHHH-
Q 010446          265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR-------I-LKIYTKVYGENDGRVGMAMCSL-  335 (510)
Q Consensus       265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------a-l~~~~~~~~~~~~~~~~~~~~l-  335 (510)
                      ..+.++++....+. +.........+..+|..|+..+++.+|..+|--       . .++.-+......+.....+... 
T Consensus       115 ~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRa  193 (336)
T 3lpz_A          115 KRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARA  193 (336)
T ss_dssp             HHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            34667777776653 222334456778899999999999999888631       1 1111111111223333333333 


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhcc-C--------------CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          336 AHAKCANGNAEEAVELYKKALRVIKDSNY-M--------------SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (510)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~--------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (510)
                      ...|...++...|...+..-.+...+... +              -+..|.+-.+  .+...-+..+.    ...|....
T Consensus       194 VL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl--~lLllt~q~~~----~~lF~~L~  267 (336)
T 3lpz_A          194 VLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFI--SMLLLSVQKGS----PDLFRQLK  267 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHH--HHHHHHHHSCC----HHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHH--HHHHHHHhcCC----HHHHHHHH
Confidence            34577899999999988777765532200 0              1123332222  22223344454    34555555


Q ss_pred             HHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010446          401 LITEKYKGKEHPSFVTHLLNLAASYSRS  428 (510)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~  428 (510)
                      +.+......+.+.....+..+|..|+..
T Consensus       268 ~~Y~~~l~rd~~~~~~~L~~IG~~YFgi  295 (336)
T 3lpz_A          268 SKYEANLNELNGIWDTALELIAEMYFGI  295 (336)
T ss_dssp             HHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence            4444443333225566777778877755

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.70  E-value=0.19  Score=46.48  Aligned_cols=105  Identities=12%  Similarity=-0.088  Sum_probs=77.3

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhhCCC---C-----------hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 010446          383 LHIVGRGQEGRELLEECLLITEKYKGKE---H-----------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (510)
Q Consensus       383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (510)
                      ....|+.+.|...+.+|+.++...+-++   .           .....+...++..+...|++.+|+..++.++..    
T Consensus       125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----  200 (388)
T 2ff4_A          125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE----  200 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence            3445777777777777776653211000   0           012234556788889999999999999988774    


Q ss_pred             hCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010446          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (510)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  495 (510)
                          +|..-..+..+..++...|+..+|+..|+++.+...+-+|-+-
T Consensus       201 ----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P  243 (388)
T 2ff4_A          201 ----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  243 (388)
T ss_dssp             ----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence                5666667889999999999999999999999998888788654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.20  E-value=0.86  Score=45.70  Aligned_cols=123  Identities=12%  Similarity=0.090  Sum_probs=81.2

Q ss_pred             hCC-hHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHH---HHHhhhcHHHHHHHHHHHHHHHHHhcC---CCC------
Q 010446          175 IGD-LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGS---MYSTLENYEKSMLVYQRVINVLESRYG---KTS------  241 (510)
Q Consensus       175 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~------  241 (510)
                      .|+ ++.|+.++++.....       |.... ++..+.   ......+--+|+....++++.......   ..+      
T Consensus       261 t~~~~~~a~~~le~L~~~~-------p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKD-------PIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHC-------GGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhC-------CchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            445 477888888765432       32222 222221   112223455677777777754322111   111      


Q ss_pred             -hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          242 -ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (510)
Q Consensus       242 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (510)
                       +.....+...+..+...|+++-|+.+.++|+..        .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence             122345666788888999999999999999998        5777899999999999999999999877654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.13  E-value=0.72  Score=42.57  Aligned_cols=118  Identities=14%  Similarity=0.085  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCC-CCh-----------hHHHHHHHHHHHHHhhCChHHHHH
Q 010446          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGN-KGI-----------EEVAILDIIALGYVYIGDLKFVQS  183 (510)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~  183 (510)
                      ..+..+...+......|+...|...+.+|+.+++.-+-.+. ..+           ....+...++..+...|++.+++.
T Consensus       113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~  192 (388)
T 2ff4_A          113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA  192 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            34556667777777889999999999999887643210000 110           112344566778889999999999


Q ss_pred             HHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC
Q 010446          184 LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (510)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (510)
                      .+..+....       |..-.++..+..++...|+..+|+..|++........++-+
T Consensus       193 ~l~~~~~~~-------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~  242 (388)
T 2ff4_A          193 ELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  242 (388)
T ss_dssp             HHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            998887653       33334577888899999999999999999998877665644

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.09  E-value=0.63  Score=35.19  Aligned_cols=68  Identities=10%  Similarity=0.017  Sum_probs=51.0

Q ss_pred             hhHHHHHHHHHHHHHhhCChH---HHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          159 IEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      .....+.+.+++++....+..   +++.+++.....    .+  .....+++.+|..+++.|+|++|..+.+..+++
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~----~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH----CC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----Cc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            345667788888888877655   566666665542    11  245667899999999999999999999999885

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.52  E-value=0.88  Score=45.62  Aligned_cols=123  Identities=7%  Similarity=-0.050  Sum_probs=80.6

Q ss_pred             CCC-HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHH--HHc-CChHHHHHHHHHHHHHHHHhhCC---CC---
Q 010446          342 NGN-AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL--HIV-GRGQEGRELLEECLLITEKYKGK---EH---  411 (510)
Q Consensus       342 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~-g~~~~A~~~~~~al~~~~~~~~~---~~---  411 (510)
                      .|+ ++.|+.++++....       .+...    ++...+.+.  ... .+--+|+..+.++++........   .+   
T Consensus       261 t~~~~~~a~~~le~L~~~-------~p~~~----~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKK-------DPIHD----IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHH-------CGGGH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             cccHHHHHHHHHHHHHhh-------CCchh----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            455 57788888886554       12111    112222222  122 23346888888777543221111   11   


Q ss_pred             ----hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010446          412 ----PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (510)
Q Consensus       412 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (510)
                          +.....+...+..+...|+++-|+++.++|+..        .|....+|..|+.+|..+|+++.|+-.+..+
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                222345666788888999999999999999985        5777889999999999999999999877766

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.44  E-value=0.63  Score=34.69  Aligned_cols=69  Identities=12%  Similarity=0.016  Sum_probs=51.6

Q ss_pred             ChhHHHHHHHHHHHHHhhCChH---HHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          158 GIEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      +...+.+.+.+|+++....+..   +++.+++...+..      ......+++.+|..+++.|+|++|..+.+..+++
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3344567788888888776554   5666666655421      2346677999999999999999999999998875

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.00  E-value=3  Score=36.73  Aligned_cols=181  Identities=10%  Similarity=-0.017  Sum_probs=101.8

Q ss_pred             cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 010446          300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL  379 (510)
Q Consensus       300 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l  379 (510)
                      .|+|=+|...++.....+.+.  .........+..-+..+.+.|++..|.++..-.++.+.+.    ..+.. ......+
T Consensus        26 ~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~----~~~~~-~~~~~rl   98 (312)
T 2wpv_A           26 AGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA----EVKVD-DISVARL   98 (312)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCCCS-HHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc----CCCCC-HHHHHHH
Confidence            344445554444444333322  1222333444445556667777777777777777776653    11111 1233556


Q ss_pred             HHHHHHcCChH-HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH--------HHHHHHHHhC
Q 010446          380 AELLHIVGRGQ-EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI--------CLDIMTKTVG  450 (510)
Q Consensus       380 a~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al~~~~~~~~  450 (510)
                      ..++.....-+ .=..+.++++....+..+ ........+..+|..|...|++.+|..+|--        ..++.-+...
T Consensus        99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~  177 (312)
T 2wpv_A           99 VRLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC  177 (312)
T ss_dssp             HHHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            66655533222 235677778877766532 2233446788899999999999999987731        1111111111


Q ss_pred             C---CChhhHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHH
Q 010446          451 P---DDQSISFPMLHLG-ITLYHLNRDKEAEKLVLEALYIRE  488 (510)
Q Consensus       451 ~---~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~  488 (510)
                      .   ..|.....+...+ ..|...|+...|...+....+...
T Consensus       178 ~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~  219 (312)
T 2wpv_A          178 QVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFI  219 (312)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence            1   3344444443333 355678999999999988876653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.80  E-value=1.2  Score=33.18  Aligned_cols=66  Identities=14%  Similarity=0.074  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          286 LVLPLFSLGSLFIKEGKAV---DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ...+.+++|+++.+..+.+   +++.+++..+..       +.......++.+|..+.+.|+|++|..+.+..+++
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            4578899999999887653   566666655542       22346778899999999999999999999999887

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.65  E-value=0.75  Score=43.49  Aligned_cols=145  Identities=10%  Similarity=0.096  Sum_probs=61.3

Q ss_pred             HHHhhhcHHHHHHHHHHHH--HHHHHhc-CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHH-------HHHHHHHHh-cC
Q 010446          212 MYSTLENYEKSMLVYQRVI--NVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH-------RVITILELN-RG  280 (510)
Q Consensus       212 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-------~al~~~~~~-~~  280 (510)
                      .+...+++++|..+-...+  +...... ..-+...+.+|+..+.++...|+.........       ..+...+.. ..
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3456788888888776555  2221110 01123456778888888888887765432211       222222222 22


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                      .+....+..++.+-+.|...+.++.|..+..++.--  .. ...+...+..++.+|.++..+++|.+|.+++..|+..+
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            244556777888999999999999999999887410  00 01123456778889999999999999999999988753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.65  E-value=7.4  Score=40.04  Aligned_cols=199  Identities=17%  Similarity=0.155  Sum_probs=105.2

Q ss_pred             hhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHH
Q 010446          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK--TSILLVTSLLGM  251 (510)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l  251 (510)
                      ..|+.++++..+...+..  ....+......+++.+|.++...++  ++..++...+.-....-+.  .......+-..+
T Consensus       386 h~g~~~~gl~~L~~yL~~--~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          386 HKGNLLEGKKVMAPYLPG--SRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             TSSCTTTHHHHHTTTSTT--SCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHhccc--cCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            456666666655443220  0012223356667888888876664  5777666655432100000  012233455578


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 010446          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (510)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (510)
                      |.++.-.++- ++.+.+...+.-       +.... ..+-..+|.++...|+-+....++..+.+       ..+..+ .
T Consensus       462 Gla~~GS~~e-ev~e~L~~~L~d-------d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e~v-r  525 (963)
T 4ady_A          462 GLAAMGSANI-EVYEALKEVLYN-------DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHGNI-T  525 (963)
T ss_dssp             HHHSTTCCCH-HHHHHHHHHHHT-------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCHHH-H
T ss_pred             HHHhcCCCCH-HHHHHHHHHHhc-------CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcHHH-H
Confidence            8887777763 455555555431       12211 23456788888888887665555554443       123222 2


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010446          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (510)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (510)
                      -...+|..+...|+.+.+....+....        ..++......-..+|..|...|+...-..++..+.
T Consensus       526 R~aalgLGll~~g~~e~~~~li~~L~~--------~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~  587 (963)
T 4ady_A          526 RGLAVGLALINYGRQELADDLITKMLA--------SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV  587 (963)
T ss_dssp             HHHHHHHHHHTTTCGGGGHHHHHHHHH--------CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhCCChHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence            224445555567777766665554332        12333333344667888888998654444665554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.56  E-value=0.98  Score=35.84  Aligned_cols=101  Identities=11%  Similarity=0.022  Sum_probs=66.1

Q ss_pred             HHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010446          172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM  251 (510)
Q Consensus       172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  251 (510)
                      ....|+++.|.+..+..         +.   ...|..+|......|+++-|+.+|.++-+                +..+
T Consensus        15 AL~lg~l~~A~e~a~~l---------~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------~~~L   66 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL---------ND---SITWERLIQEALAQGNASLAEMIYQTQHS----------------FDKL   66 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH---------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------HHHH
T ss_pred             HHhcCCHHHHHHHHHHh---------CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------HHHH
Confidence            45789999998886653         11   22488999999999999999999988632                2234


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010446          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (510)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (510)
                      ..+|...|+.+.-....+.+...             .-++....++...|+++++++++.+.
T Consensus        67 ~~Ly~~tg~~e~L~kla~iA~~~-------------g~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           67 SFLYLVTGDVNKLSKMQNIAQTR-------------EDFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHC-------------ccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            55666677775544433333221             11223345677889999888887654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.41  E-value=1  Score=35.68  Aligned_cols=101  Identities=16%  Similarity=0.114  Sum_probs=64.6

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 010446          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (510)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (510)
                      ....|+++.|.+..++.          +.   ...|..||......|+++-|+.+|.++-..                  
T Consensus        15 AL~lg~l~~A~e~a~~l----------~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------   63 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL----------ND---SITWERLIQEALAQGNASLAEMIYQTQHSF------------------   63 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH----------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------
T ss_pred             HHhcCCHHHHHHHHHHh----------CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------
Confidence            45678888888775532          12   246888999999999999999999885443                  


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010446          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (510)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (510)
                      ..+.-+|...|+.+.-....+.+..    .   ..      ++.-..++...|+++++++.|.+.
T Consensus        64 ~~L~~Ly~~tg~~e~L~kla~iA~~----~---g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           64 DKLSFLYLVTGDVNKLSKMQNIAQT----R---ED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH----T---TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH----C---cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            3355566667776554433332221    1   11      122234566788998888887654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.98  E-value=3.3  Score=39.19  Aligned_cols=144  Identities=12%  Similarity=0.057  Sum_probs=60.6

Q ss_pred             HHhhcCCHHHHHHHHHHHH--HHHHHhc-CCCCcchHHHHHHHHHHHHHcCChHHHHHH-------HHHHHHHHHHHcC-
Q 010446          254 VLGSIGRAKKAVEIYHRVI--TILELNR-GTESADLVLPLFSLGSLFIKEGKAVDAESV-------FSRILKIYTKVYG-  322 (510)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~~~~~~-  322 (510)
                      .+...+++++|..+....+  +...... -.-+.-.+.+|+..+.++...|+.......       -...+..++.... 
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3556788888888877665  2222110 001233456677777777777776553221       1122233333222 


Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (510)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (510)
                      .+....+..++.+-..|...+.++.|..+..++.  +..   ....+...+..++.+|.++.-+++|.+|.+++..|+..
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~---~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPH---TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCT---TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCc---ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            2333456677888899999999999999998863  111   01234456777888999999999999999999998754

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.62  E-value=2.9  Score=32.55  Aligned_cols=97  Identities=16%  Similarity=0.103  Sum_probs=70.3

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH----------H
Q 010446          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY----------T  318 (510)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~  318 (510)
                      ..++.+++-.|+|..++-++..             ..++.+.+.-+.||....+|..|+..++..++--          -
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~  103 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI  103 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred             hhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence            3567788889999988766542             2356666777889999999999999999887310          0


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      +.+-.+..+.-..+..+|.++...|+.+||+.++......
T Consensus       104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            0111112223455778999999999999999999987765

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.61  E-value=1  Score=42.78  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  315 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  315 (510)
                      ..++..+|.+......+..|..+|.+|..+        .|..+..++.||.+....|+.-+|+-+|.+++.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            356788999999999999999999999998        678899999999999999999999999998875

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.37  E-value=5.4  Score=35.09  Aligned_cols=145  Identities=11%  Similarity=-0.024  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      +...+.+....+..|+|-+|.+.++.......+    .....+..+.++.-+..+...|++..|..+....++.....+.
T Consensus        13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~----~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~   88 (312)
T 2wpv_A           13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVR----SKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV   88 (312)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence            334555666667778888888777766555433    2223444556666666777778877777776666655554222


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYE-KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH  269 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  269 (510)
                      .. . ......+..++.....-+ .=..+..+++....+. +.........+..+|..|...|++.+|..++-
T Consensus        89 ~~-~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A           89 KV-D-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CC-S-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CC-C-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            11 1 112344555544322111 1245556666655543 22122334567778888888888888777764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=91.62  E-value=3.5  Score=31.22  Aligned_cols=68  Identities=13%  Similarity=0.073  Sum_probs=52.8

Q ss_pred             cchHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          284 ADLVLPLFSLGSLFIKEGKAV---DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      .....+.+++|+++....+.+   +++.+++..+..       .....-..++.+|..+.+.|+|++|..+.+..+++
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            345778899999999887765   466666655542       22245678889999999999999999999999987

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.09  E-value=10  Score=40.63  Aligned_cols=105  Identities=12%  Similarity=0.086  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-------------HHH--cCCCChHHHHHHHHHHHHHHHCCCHHHHHHH
Q 010446          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIY-------------TKV--YGENDGRVGMAMCSLAHAKCANGNAEEAVEL  351 (510)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  351 (510)
                      ....+.+|.++...|++++|..+|+++-.-.             ...  ...........|..+..++...|.++.++++
T Consensus       842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f  921 (1139)
T 4fhn_B          842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF  921 (1139)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3345789999999999999999998763210             000  0001111234577788889999999999999


Q ss_pred             HHHHHHHHHhhccCCCCChH-HHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          352 YKKALRVIKDSNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLE  397 (510)
Q Consensus       352 ~~~al~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~  397 (510)
                      .+.|++..      .++++. ....+.++-..+...|+|++|...+.
T Consensus       922 a~lAi~~~------~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          922 SLLADASK------ETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHHHHC------CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHHHHhc------cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            99998762      233332 33467888888999999999987764

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.17  E-value=9.6  Score=33.82  Aligned_cols=215  Identities=7%  Similarity=-0.043  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHcCCCC
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV-DAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~  325 (510)
                      .++.-+..+.+.|++..|.++..-.++.+.+..-   +........+..++.....-+ .=..+.++++....+. +...
T Consensus        57 LL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~---~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~  132 (336)
T 3lpz_A           57 ILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQ---RVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYP  132 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCT
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCC
Confidence            3444455566667777777777777776666532   222344555666655544322 2355777888877664 2222


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------H-HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKK-------A-LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------a-l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (510)
                      .........+|..|.+.+++.+|..+|-.       . ..+.-+.-. ...+...........-.|...++...|...+.
T Consensus       133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~-~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~  211 (336)
T 3lpz_A          133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK-QDESHTAPLYCARAVLPYLLVANVRAANTAYR  211 (336)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH-TSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            22345567789999999999999887621       1 111111000 01112222222333445678899999988877


Q ss_pred             HHHHHHHHhhC-----------------CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHH
Q 010446          398 ECLLITEKYKG-----------------KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  460 (510)
Q Consensus       398 ~al~~~~~~~~-----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  460 (510)
                      .-.+...+...                 +..|..  ....+...-++.+.    ...|+...+.+...+..+.+.....+
T Consensus       212 ~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL--NFl~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L  285 (336)
T 3lpz_A          212 IFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL--NFISMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTAL  285 (336)
T ss_dssp             HHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH--HHHHHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHH
T ss_pred             HHHHHHhhcCCCccccccccCCcccccCCCCchH--HHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence            76655432211                 012221  12222223344444    35566665555555544433677788


Q ss_pred             HHHHHHHHhcCC
Q 010446          461 LHLGITLYHLNR  472 (510)
Q Consensus       461 ~~la~~~~~~g~  472 (510)
                      ..+|..|+....
T Consensus       286 ~~IG~~YFgi~~  297 (336)
T 3lpz_A          286 ELIAEMYFGIQR  297 (336)
T ss_dssp             HHHHHHHHCCCC
T ss_pred             HHHHHHHcCCCC
Confidence            889999987643

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.82  E-value=12  Score=34.40  Aligned_cols=133  Identities=10%  Similarity=0.002  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc----------CCCchHHHHH
Q 010446          136 DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL----------KDDEPLLDAI  205 (510)
Q Consensus       136 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~  205 (510)
                      .-+++|+..+.-+....     .|-.  ....+..+.....+.++|.++++.........          .........+
T Consensus        57 ~~~~ly~~fi~~f~~ki-----n~L~--lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i  129 (393)
T 4b4t_O           57 LRLRLYDNFVSKFYDKI-----NQLS--VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLI  129 (393)
T ss_dssp             CCHHHHHHHHHHHHHHS-----CSHH--HHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHhc-----CHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHH
Confidence            34566666665554433     2211  11122344556788999999998764433211          0111223445


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      ...++..|...|+.++|..+++++-.......+.+....+..+...+..|...+++..+....-..+...
T Consensus       130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~  199 (393)
T 4b4t_O          130 DSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL  199 (393)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            6778999999999999999999998887776444445566777778888889999988777666665543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.71  E-value=2.2  Score=40.55  Aligned_cols=62  Identities=15%  Similarity=0.049  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                      .++..||.+..-...+..|..+|.+|..+        .|.....+..||.+....|+.-+|.-+|.+++.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            46778999999999999999999999996        678889999999999999999999999988864

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.16  E-value=14  Score=33.84  Aligned_cols=108  Identities=13%  Similarity=-0.051  Sum_probs=73.9

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhhCC---------CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhC
Q 010446          380 AELLHIVGRGQEGRELLEECLLITEKYKGK---------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (510)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (510)
                      ..+.....+.++|.+++++......+....         .......+...++..|...|+.++|..+++++-.......+
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~  162 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS  162 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence            445556778899999988764433322111         11234566778899999999999999999999887776544


Q ss_pred             CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010446          451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  487 (510)
                      .+..-....+...+..|...+++..+....-..+...
T Consensus       163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~  199 (393)
T 4b4t_O          163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL  199 (393)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            4433455556667788888899887766655555433

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=87.06  E-value=13  Score=31.50  Aligned_cols=58  Identities=17%  Similarity=0.131  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Q 010446          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  489 (510)
                      .+.|...|++|.++. ..+.|.||.......+.+..|+. +|+.++|..+.++|+.-.-.
T Consensus       172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~  230 (260)
T 2npm_A          172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE  230 (260)
T ss_dssp             HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            357889999999999 77889999988888888887776 89999999999888875544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.99  E-value=5.4  Score=42.80  Aligned_cols=104  Identities=12%  Similarity=-0.005  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-------------hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010446          332 MCSLAHAKCANGNAEEAVELYKKALRVIKD-------------SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (510)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (510)
                      .+.+|.++...|++++|..+|+++-.....             .....+........|..+..++.+.|.++.++++.+.
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            467899999999999999999886321100             0000111122234567788899999999999999999


Q ss_pred             HHHHHHHhhCCCChh-HHHHHHHHHHHHHhccCHHHHHHHHH
Q 010446          399 CLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLR  439 (510)
Q Consensus       399 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~  439 (510)
                      |++..    +++.+. ....+.++=..+...|+|++|...+.
T Consensus       925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            98753    223333 23357777788899999999977664

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.97  E-value=9.4  Score=32.54  Aligned_cols=124  Identities=12%  Similarity=0.022  Sum_probs=78.0

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHH
Q 010446          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (510)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (510)
                      ..+.+.|+.++|+...+..++.          .|.++.....+...+.-.|++++|...++.+.++...    ....+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~----------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~----~~~~a~~   70 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKA----------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE----YLPGASQ   70 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG----GHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch----hhHHHHH
Confidence            4567889999999999988876          8888888889999999999999999999988776521    1111111


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHH--HHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVL--ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      |..+..          |+..=.+.+.-.  ...++  .+.-......-+......|+.++|...-.++++..
T Consensus        71 yr~lI~----------aE~~R~~vfaG~~~P~~~g--~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a  130 (273)
T 1zbp_A           71 LRHLVK----------AAQARKDFAQGAATAKVLG--ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  130 (273)
T ss_dssp             HHHHHH----------HHHHHHHHTTSCCCEECCC--SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHH----------HHHHHHHHHcCCCCCCCCC--CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence            221111          111111111000  00011  12223333444566677899999999999998874

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=86.03  E-value=3.6  Score=27.98  Aligned_cols=46  Identities=13%  Similarity=-0.074  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 010446          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLT  502 (510)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  502 (510)
                      +..+...+..+...|+|++|+++.+++.....+.+.-.....++.+
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~S   60 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLS   60 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            4455678888999999999999999999888877665544444443

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=85.17  E-value=16  Score=30.83  Aligned_cols=59  Identities=17%  Similarity=0.089  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Q 010446          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  489 (510)
                      .+.|...|++|.++....+.|.||.......+.+..|+. .++.++|..+.++|++-.-.
T Consensus       172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~  231 (261)
T 3ubw_A          172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA  231 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            367889999999999888999999998888888887776 79999999998888775543

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=84.76  E-value=17  Score=30.78  Aligned_cols=182  Identities=9%  Similarity=0.050  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      ++..+...-+.++|++...+..++.+.       +........-.+.+..+|- ..|....+.+.+.....-.+. ... 
T Consensus        11 ~v~~AkLaeqaeRyddm~~~mk~v~~~-------~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~-k~~-   81 (260)
T 1o9d_A           11 NVYMAKLAEQAERYEEMVEFMEKVSNS-------LGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEES-RGN-   81 (260)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHT-------CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTC-
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhc-cCc-
Confidence            555677777889999999998887764       2001122222334444442 234444555554433222111 011 


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHHhhc-----C-----CHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK--TSI-LLVTSLLGMAKVLGSI-----G-----RAKKAVE  266 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~-----g-----~~~~A~~  266 (510)
                      ...    ..+..-|. ..--.+=...+...+.+....+-+  .++ ..+-.+...|..|...     |     -.+.|..
T Consensus        82 ~~~----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~  156 (260)
T 1o9d_A           82 EEH----VNSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLT  156 (260)
T ss_dssp             HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHH
Confidence            111    11111121 111222334445555554443211  112 2222233345554432     2     1357888


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 010446          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKI  316 (510)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  316 (510)
                      .|++|.++......+.+|.......+.+..|+. +++.++|..+.+++..-
T Consensus       157 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  207 (260)
T 1o9d_A          157 AYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  207 (260)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            999999999877778888776666666666655 79999999888877764

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=84.65  E-value=16  Score=30.21  Aligned_cols=181  Identities=8%  Similarity=-0.022  Sum_probs=100.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCCh
Q 010446          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDDS  370 (510)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (510)
                      .+|.+..+.++|++...+.+++.+.+.....+-..   .-.+.++.+|-. .|....+...+..    .++.   .....
T Consensus        11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~---EERnLLSvAYKNvig~rR~swRiiss----iEqk---ek~~~   80 (227)
T 2o8p_A           11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD---EERHLLTLCIKHKISDYRTMTSQVLQ----EQTK---QLNND   80 (227)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---SCSCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCH---HHHHHHHHHHHHhhcccHHHHHHHHH----HHHH---HcCCH
Confidence            57888889999999999999988732111111111   112222222211 1222222222222    1111   00111


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHHHH
Q 010446          371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-----RSKNFVEAERLLRICLDIM  445 (510)
Q Consensus       371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~  445 (510)
                      ..    ..+..-|... =-.+=.......+.+..+.+-+.....+..+...|..|.     ..|+.+.|...|+.|.++.
T Consensus        81 ~~----~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA  155 (227)
T 2o8p_A           81 EL----VKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLL  155 (227)
T ss_dssp             HH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence            11    1122222211 112223345555555555433322122223333444443     4567899999999999999


Q ss_pred             HHHhCCCChhhHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHH
Q 010446          446 TKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~  487 (510)
                      ...+.|.||.......+.+..|+ -++++++|..+.++|+.+.
T Consensus       156 ~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          156 CEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             HHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            88788899988887788877766 5799999999999998864

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=84.55  E-value=18  Score=30.72  Aligned_cols=56  Identities=20%  Similarity=0.170  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 010446          432 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       432 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  487 (510)
                      +.|...|++|.++....+.|.||.......+.+..|+. +|+.++|..+-++|+.-.
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  208 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            57889999999999888899999988888888887776 799999988877776544

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=84.43  E-value=7.4  Score=26.28  Aligned_cols=38  Identities=16%  Similarity=0.113  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010446          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI  152 (510)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~  152 (510)
                      ......+...|...-+.|++++|+.+|.++++.+....
T Consensus        16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~al   53 (83)
T 2w2u_A           16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLV   53 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            34455677888888999999999999999999887764

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=83.32  E-value=8.6  Score=26.18  Aligned_cols=37  Identities=5%  Similarity=0.032  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN  153 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~  153 (510)
                      ....+...+...-..|++++|+.+|.++++.+.....
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk   51 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLK   51 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            4455777888889999999999999999998877653

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=81.21  E-value=14  Score=26.98  Aligned_cols=56  Identities=14%  Similarity=0.173  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY  172 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (510)
                      ....++..|...-..|+|++|+.+|..+++.+..........+.....+.....-|
T Consensus        17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eY   72 (117)
T 2cpt_A           17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY   72 (117)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            44456777777788899999999999999988776543323444344444443333

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=81.15  E-value=23  Score=29.55  Aligned_cols=182  Identities=9%  Similarity=0.013  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      ++..+...-+.++|++...+..++.+.       +  ......-.+.+..+|-. .|....+.+.+.....-.+..+.  
T Consensus         8 ~v~~AklaeqaeRyddm~~~mk~v~~~-------~--~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~--   76 (234)
T 2br9_A            8 LVYQAKLAEQAERYDEMVESMKKVAGM-------D--VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGG--   76 (234)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTT-------C--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHhcc-------c--CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCc--
Confidence            455677777889999999988887653       1  12222333444444422 34344444444332221111011  


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHHhhcC----------CHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK--TSI-LLVTSLLGMAKVLGSIG----------RAKKAVE  266 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~g----------~~~~A~~  266 (510)
                      ...    ..+..-|. ..=-.+=...+...+.+....+-+  .++ ..+-.+...|..|...-          -.+.|..
T Consensus        77 ~~~----~~~i~~yr-~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~  151 (234)
T 2br9_A           77 EDK----LKMIREYR-QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLV  151 (234)
T ss_dssp             HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             hHH----HHHHHHHH-HHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHH
Confidence            111    11111111 111122233444555554443211  111 12222333444443321          2357888


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHH
Q 010446          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYT  318 (510)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~  318 (510)
                      .|++|.++......+.+|.......+.+..|+. .++.++|..+.+++..-.-
T Consensus       152 aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai  204 (234)
T 2br9_A          152 AYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI  204 (234)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999999999877778888776666666666655 8999999999888876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	510
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-10
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	6e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.002
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.003

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 60.3 bits (144), Expect = 2e-10
 Identities = 52/378 (13%), Positives = 125/378 (33%), Gaps = 22/378 (5%)

Query: 115 ERQLLELFNEVKSMIMM--GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY 172
           E  +   FN +++ + +  GN ++A  L +    A+  +          +    ++    
Sbjct: 7   EDTMHAEFNALRAQVAINDGNPDEAERLAK---LAL--EELPPGWFYSRIVATSVLGEVL 61

Query: 173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232
              G+L    +L+     +          L +++     +       + +    ++   +
Sbjct: 62  HCKGELTRSLALMQQTEQMARQHDVWHYALWSLI-QQSEILFAQGFLQTAWETQEKAFQL 120

Query: 233 LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292
           +  ++ +   +    +   A++L +  R  +A       I +L   +  +       L  
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC---LAM 177

Query: 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352
           L    +  G   +A S  +R+  +       +   +  A           G+   A    
Sbjct: 178 LIQCSLARGDLDNARSQLNRLENLLGN-GKYHSDWISNANKVRVIYWQMTGDKAAAANWL 236

Query: 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412
           +   +    +N+       ++    ++A    ++G  +    +LEE          +   
Sbjct: 237 RHTAKPEFANNH------FLQGQWRNIARAQILLGEFEPAEIVLEELNEN--ARSLRLMS 288

Query: 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP-MLHLGITLYHLN 471
               +LL L   Y ++    +A+R+L   L +  +T       I    M      L  LN
Sbjct: 289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLN 348

Query: 472 RDKEAEKLVLEALYIREI 489
              E E+   + + +REI
Sbjct: 349 TLPELEQHRAQRI-LREI 365

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 37/303 (12%), Positives = 78/303 (25%), Gaps = 11/303 (3%)

Query: 82  HHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLL 141
             L        +  RS  L   +  +    + +   L  L  + + +   G    A +  
Sbjct: 55  SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 114

Query: 142 QANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201
           +  ++          +      ++ I A        L   ++        ++ L   +P 
Sbjct: 115 EKAFQL--INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG---IEVLSSYQPQ 169

Query: 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261
                L M    S       +       +  L       S  +  +           G  
Sbjct: 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 229

Query: 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
             A             N       L     ++    I  G+   AE V   + +    + 
Sbjct: 230 AAAANWLRHTAKPEFANN----HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL- 284

Query: 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 381
                 +   +  L       G   +A  +   AL++   + ++S      E M   L +
Sbjct: 285 -RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ 343

Query: 382 LLH 384
           L+ 
Sbjct: 344 LIQ 346

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 41/264 (15%), Positives = 92/264 (34%), Gaps = 50/264 (18%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
           ++G +++       ++  +++ + +  +         + + + +  VL       +AV  
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPN--------FLDAYINLGNVLKEARIFDRAVAA 225

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
           Y R +++        S +  +   +L  ++ ++G    A   + R +++           
Sbjct: 226 YLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPH 269

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
              A C+LA+A    G+  EA + Y  ALR                +   +LA +    G
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALR----------LCPTHADSLNNLANIKREQG 319

Query: 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
             +E   L  + L +         P F     NLA+   +     EA    +  + I   
Sbjct: 320 NIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 368

Query: 448 TVGPDDQSISFPMLHLGITLYHLN 471
                  + +    ++G TL  + 
Sbjct: 369 -----SPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 40/236 (16%), Positives = 77/236 (32%), Gaps = 42/236 (17%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
           +  V  + G    A+  + + +T+          + +    +LG++  +      A + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
            R L +             +   +LA      G  + A++ Y++A+ +            
Sbjct: 227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-------- 270

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430
              +   +LA  L   G   E  +     L        +  P+    L NLA       N
Sbjct: 271 --PDAYCNLANALKEKGSVAEAEDCYNTAL--------RLCPTHADSLNNLANIKREQGN 320

Query: 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
             EA RL R  L++            +    +L   L    + +EA     EA+ I
Sbjct: 321 IEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 41/327 (12%), Positives = 102/327 (31%), Gaps = 24/327 (7%)

Query: 31  QNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSA 90
                +  +    ++       I                  +L            +  + 
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124

Query: 91  PNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKE 150
            +    +  L+   S+L + +    R        +K++    N   A   L   + A  E
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184

Query: 151 QINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210
              A +   + V +       Y+ +G++     + D             P    +  ++ 
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244

Query: 211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR 270
            +Y      + ++  Y+R I +              +   +A  L   G   +A + Y+ 
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPH--------FPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 271 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330
            + +   +  +          +L ++  ++G   +A  ++ + L+++ +           
Sbjct: 297 ALRLCPTHADSL--------NNLANIKREQGNIEEAVRLYRKALEVFPEFA--------A 340

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALR 357
           A  +LA      G  +EA+  YK+A+R
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 7e-04
 Identities = 24/171 (14%), Positives = 42/171 (24%), Gaps = 26/171 (15%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 390
           A  +L     A G    A+  ++KA+ +  +            +  I+L  +L       
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF----------LDAYINLGNVLKEARIFD 220

Query: 391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450
                                P+      NLA  Y        A    R  +++      
Sbjct: 221 RAVAAYLRA--------LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL------ 266

Query: 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLL 501
                      +L   L       EAE     AL +        +    + 
Sbjct: 267 --QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 7/68 (10%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
              L     + G    AE    ++ +      G         +  L+         + + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTG--------VLLLLSSIHFQCRRLDRSA 53

Query: 350 ELYKKALR 357
                A++
Sbjct: 54  HFSTLAIK 61

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 30/280 (10%), Positives = 70/280 (25%), Gaps = 45/280 (16%)

Query: 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261
             A         +     E +   Y +++  L + +    +        +  +       
Sbjct: 78  NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF-NVDLPCRVKSSQLGIISNKQTHT 136

Query: 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
              V+      +                L  LG +     +   AES +    ++     
Sbjct: 137 SAIVKPQSSSCSY----------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL----- 181

Query: 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 381
                  G     LA    + G+    +  Y +++ V           +   N++     
Sbjct: 182 ---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF------PAASTNLQK---- 228

Query: 382 LLHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
                         L + L   ++ K K     F+   +        SK+  +   L   
Sbjct: 229 -------------ALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREK 275

Query: 441 CLDIMTKTV--GPDDQSISFPMLHLGITLYHLNRDKEAEK 478
             +   + +     +      +  + +   H  RD   E 
Sbjct: 276 LEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNET 315

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 15/156 (9%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L++ G L   +     A   FS +   ++++             ++        N  EA 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPHSRIC-----------FNIGCMYTILKNMTEAE 56

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           + + +++   K          ++          +  +   +E    L    LI  K  G 
Sbjct: 57  KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL---KEALIQLRGNQLIDYKILGL 113

Query: 410 EHPSFVTHLL-NLAASYSRSKNFVEAERLLRICLDI 444
           +   F   +L N+A  Y++ + + +AE  L +   +
Sbjct: 114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 41/321 (12%), Positives = 89/321 (27%), Gaps = 33/321 (10%)

Query: 195 LKDDEPLLDA-ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253
            +++ PL D       G       +   ++L+++  +   + ++       + +   +  
Sbjct: 10  FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-QDPKH-------MEAWQYLGT 61

Query: 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313
                 +   A+    R + +   N+    A  V            E          +  
Sbjct: 62  TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 121

Query: 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-- 371
             +     G     +G +   L      +    E  EL+  A+R+   S    +   +  
Sbjct: 122 HLVTPAEEGAGGAGLGPSKRILGSLLS-DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180

Query: 372 -----------------MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414
                              ++R +   L + +G         EE +    +   +  P +
Sbjct: 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL-ELQPGY 239

Query: 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP---MLHLGITLYHLN 471
           +    NL  S        EA       L++  K+ GP  +  +        L + L  L 
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299

Query: 472 RDKEAEKLVLEALYIREIAFG 492
           +           L      FG
Sbjct: 300 QSDAYGAADARDLSTLLTMFG 320

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 26/134 (19%), Positives = 36/134 (26%), Gaps = 20/134 (14%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI--------MENMRID---- 378
           A  +      A G  E+A      ALR  +      L D          +   ++     
Sbjct: 13  AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTA 72

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
            AE     GR       LE            EHP        L  +Y  S    +A    
Sbjct: 73  KAEAEIACGRASAVIAELEALT--------FEHPYREPLWTQLITAYYLSDRQSDALGAY 124

Query: 439 RICLDIMTKTVGPD 452
           R     +   +G D
Sbjct: 125 RRVKTTLADDLGID 138

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 25/147 (17%)

Query: 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400
           + G  ++A+EL  +A++        SL        R    ELL I G  +   E L + +
Sbjct: 8   SEGQLQQALELLIEAIK--ASPKDASL--------RSSFIELLCIDGDFERADEQLMQSI 57

Query: 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 460
                   K  P ++     L      ++   +  +                +       
Sbjct: 58  --------KLFPEYLPGASQLRHLVKAAQARKDFAQGAA-------TAKVLGENEELTKS 102

Query: 461 LHLGITLYHLNRDKEAEKLVLEALYIR 487
           L            ++  +L L+   +R
Sbjct: 103 LVSFNLSMVSQDYEQVSELALQIEELR 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	510
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.94
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.78
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.77
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.76
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.74
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.71
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.46
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.45
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.39
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.38
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.38
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.35
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.34
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.33
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.33
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.29
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.28
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.26
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.25
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.24
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.24
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.24
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.23
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.23
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.22
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.2
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.2
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.2
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.17
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.11
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.02
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.98
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.96
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.89
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.73
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.61
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.5
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.37
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.92
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.78
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.37
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.25
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.75
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	95.47
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	92.55
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	92.24
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	92.17
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	91.95
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	88.78
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.5
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	87.09
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	84.17
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	83.94
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-29  Score=235.55  Aligned_cols=306  Identities=17%  Similarity=0.190  Sum_probs=261.4

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchH
Q 010446          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (510)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (510)
                      +..|..+++.|++++|+..++++++.          .|..+.++..+|.++...|++++|+..++++++..       |.
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~   65 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQ----------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PL   65 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CC
Confidence            45788899999999999999999987          77788899999999999999999999999998874       44


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh---------------------------------------------
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR---------------------------------------------  236 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------------------------  236 (510)
                      ...++..+|.+|...|++++|+..+.++.......                                             
T Consensus        66 ~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (388)
T d1w3ba_          66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45678999999999999999999998887641000                                             


Q ss_pred             ---------------cCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC
Q 010446          237 ---------------YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG  301 (510)
Q Consensus       237 ---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  301 (510)
                                     .....|....++..+|..+...|++++|...++++++.        +|....++..+|.++...|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~  217 (388)
T d1w3ba_         146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEAR  217 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTT
T ss_pred             cccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--------CcccHHHHHHHhhhhhccc
Confidence                           00011233567888999999999999999999999987        5667889999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHH
Q 010446          302 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE  381 (510)
Q Consensus       302 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~  381 (510)
                      ++++|+..++++...        .+.....+..+|.++...|++++|+..|++++++       .|+.   ..++..+|.
T Consensus       218 ~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~---~~~~~~l~~  279 (388)
T d1w3ba_         218 IFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-------QPHF---PDAYCNLAN  279 (388)
T ss_dssp             CTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------CSSC---HHHHHHHHH
T ss_pred             cHHHHHHHHHHhHHH--------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHH
Confidence            999999999998875        2344567888999999999999999999999986       3433   346788999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHH
Q 010446          382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (510)
Q Consensus       382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (510)
                      ++...|++++|+..+++++..        .|.....+..+|.++...|++++|+.+|++++++        +|....++.
T Consensus       280 ~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~  343 (388)
T d1w3ba_         280 ALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHS  343 (388)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence            999999999999999998764        3455678889999999999999999999999873        567778899


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          462 HLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       462 ~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      .+|.+|..+|++++|+.+|++++++
T Consensus       344 ~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         344 NLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999975

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-26  Score=217.28  Aligned_cols=294  Identities=16%  Similarity=0.200  Sum_probs=249.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc---
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL---  195 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---  195 (510)
                      ..+...+..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+..+.......   
T Consensus        34 ~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  103 (388)
T d1w3ba_          34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG  103 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHhhhhccccccccccccccccccccccc
Confidence            34677889999999999999999999988          78888999999999999999999999988776632100   


Q ss_pred             ----------------------------------------------------------CCCchHHHHHHHHHHHHHHhhh
Q 010446          196 ----------------------------------------------------------KDDEPLLDAILLHMGSMYSTLE  217 (510)
Q Consensus       196 ----------------------------------------------------------~~~~~~~~~~~~~l~~~~~~~g  217 (510)
                                                                                ....|....++..+|..+...|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  183 (388)
T d1w3ba_         104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG  183 (388)
T ss_dssp             HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccC
Confidence                                                                      0001122355778899999999


Q ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010446          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (510)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (510)
                      ++++|...++++++.        +|....++..+|.++...|++++|+..++++...        .+.....+..+|.++
T Consensus       184 ~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  247 (388)
T d1w3ba_         184 EIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVY  247 (388)
T ss_dssp             CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHh--------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--------hhhHHHHHHHHHHHH
Confidence            999999999999875        3455778999999999999999999999999876        455677889999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHH
Q 010446          298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI  377 (510)
Q Consensus       298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  377 (510)
                      ...|++++|+..|++++++        .|....++..+|.++...|++++|+..++.++..       .+..   ...+.
T Consensus       248 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~  309 (388)
T d1w3ba_         248 YEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-------CPTH---ADSLN  309 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-------CTTC---HHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-------CCcc---chhhh
Confidence            9999999999999999984        3555678899999999999999999999998876       2333   34568


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhH
Q 010446          378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  457 (510)
Q Consensus       378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  457 (510)
                      .+|.++...|++++|+.+|++++++        .|....++..+|.+|...|++++|+..|++++++        +|+..
T Consensus       310 ~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~P~~~  373 (388)
T d1w3ba_         310 NLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFA  373 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            8999999999999999999998863        4666788999999999999999999999999974        56777


Q ss_pred             HHHHHHHHHHHhcCC
Q 010446          458 FPMLHLGITLYHLNR  472 (510)
Q Consensus       458 ~~~~~la~~~~~~g~  472 (510)
                      .++.++|.+|.++||
T Consensus       374 ~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         374 DAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            889999999999986

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2e-23  Score=193.50  Aligned_cols=341  Identities=13%  Similarity=0.044  Sum_probs=276.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      ..-++..+...|++++|+.+++++++..     +....+....++..+|.++...|++++|+..+++++.+.... ++.+
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~-----~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~   88 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEEL-----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-DVWH   88 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC-----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-cchH
Confidence            4446888899999999999999999862     222234456788999999999999999999999999887663 4556


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      .....+..++.++...|++..|...+.+++.+.........+..+..+..+|.++...|+++.|...+.++.......  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--  166 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--  166 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh--
Confidence            667778999999999999999999999999998887666677778889999999999999999999999998875443  


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                       .......++..++..+...+++.++...+.++....... +...+....++..++.++...|++++|..++++++... 
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-  243 (366)
T d1hz4a_         167 -QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE-  243 (366)
T ss_dssp             -CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC-
T ss_pred             -hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-cccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc-
Confidence             234556778889999999999999999999999887654 23344566778889999999999999999999887652 


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (510)
                           ..++......+.++|.++...|++++|...+++++......  ...+....++..+|.+|..+|++++|++.+++
T Consensus       244 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         244 -----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             -----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             -----cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                 23344555677889999999999999999999999988765  35677888999999999999999999999999


Q ss_pred             HHHHHHHHhCCC-ChhhHHHHHHHHHHHHhcCChHHHHHH
Q 010446          441 CLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKL  479 (510)
Q Consensus       441 al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (510)
                      ++++..+..... .......+..+...+...++.+++...
T Consensus       317 Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         317 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            999877652111 011223345555666777888888764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.6e-23  Score=194.10  Aligned_cols=317  Identities=11%  Similarity=0.053  Sum_probs=267.4

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      ++..+......|.++...|++++|+.++++++.....  .+.+....++..+|.++...|++++|+..|++++++.... 
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~--~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-   84 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP--GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC--CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-
Confidence            3445667777899999999999999999999887532  2334455678899999999999999999999999987764 


Q ss_pred             CCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                       ++.+....++..++.++...|++..|...+.+++.+.........+.....+..+|.++...|+++.|...+.+++...
T Consensus        85 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~  163 (366)
T d1hz4a_          85 -DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  163 (366)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence             4456777889999999999999999999999999999887766677777888999999999999999999999998875


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (510)
                      ...   .......++...+..+...+++.++...+.++.......   ....+....++..++.++...|++++|..+++
T Consensus       164 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  237 (366)
T d1hz4a_         164 SSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWLR  237 (366)
T ss_dssp             TTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhh---hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh---cccCchHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            433   234456778889999999999999999999999987763   44455566777889999999999999999998


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 010446          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (510)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (510)
                      +++...    ....+.....+.++|.++...|++++|..++++++......  ...+....++..+|.+|..+|++++|.
T Consensus       238 ~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~  311 (366)
T d1hz4a_         238 HTAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQ  311 (366)
T ss_dssp             HSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhc----cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence            876542    23345666778899999999999999999999999987764  456788889999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 010446          478 KLVLEALYIREIA  490 (510)
Q Consensus       478 ~~~~~al~~~~~~  490 (510)
                      +.+++++++..+.
T Consensus       312 ~~l~~Al~l~~~~  324 (366)
T d1hz4a_         312 RVLLDALKLANRT  324 (366)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999988763

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.2e-23  Score=186.08  Aligned_cols=289  Identities=16%  Similarity=0.126  Sum_probs=221.7

Q ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010446          165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL  244 (510)
Q Consensus       165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (510)
                      .+..|..++..|++++|+..|+++++..       |....++..+|.++...|++++|+..|.+++++.        |..
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~   86 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------PDN   86 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--------ccc
Confidence            4678999999999999999999998764       4556679999999999999999999999999862        445


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC-cch------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-ADL------VLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                      ...+..+|.+|...|++++|+..+++++........... ...      ..........+...+.+.+|...+.+++.+.
T Consensus        87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  166 (323)
T d1fcha_          87 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD  166 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            678999999999999999999999999876322100000 000      0011112233445567888999999888752


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010446          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (510)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (510)
                           ++. ....++..+|.++...|++++|+.++++++..       .|+.   ..++..+|.++...|++++|+..|+
T Consensus       167 -----p~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~  230 (323)
T d1fcha_         167 -----PTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-------RPND---YLLWNKLGATLANGNQSEEAVAAYR  230 (323)
T ss_dssp             -----TTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----hcc-cccccchhhHHHHHHHHHHhhhhccccccccc-------cccc---ccchhhhhhcccccccchhHHHHHH
Confidence                 222 23467888999999999999999999999887       3333   4567899999999999999999999


Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCC---ChhhHHHHHHHHHHHHhcCChH
Q 010446          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD---DQSISFPMLHLGITLYHLNRDK  474 (510)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~  474 (510)
                      +++++        .|....++..+|.+|...|++++|+..|++++++..+..+..   ......++..++.++...|+.+
T Consensus       231 ~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         231 RALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHH--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            99985        355567899999999999999999999999999866532211   1223345677888999999998


Q ss_pred             HHHHHHHHHHHHHHHhcC
Q 010446          475 EAEKLVLEALYIREIAFG  492 (510)
Q Consensus       475 ~A~~~~~~al~~~~~~~~  492 (510)
                      .+.....+.++...+.+|
T Consensus       303 ~~~~~~~~~l~~l~~~~~  320 (323)
T d1fcha_         303 AYGAADARDLSTLLTMFG  320 (323)
T ss_dssp             GHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHhCHHHHHHHhC
Confidence            888887777777666665

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.7e-23  Score=186.60  Aligned_cols=285  Identities=14%  Similarity=0.050  Sum_probs=217.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      .+..|..++..|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++.+.       |
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p   84 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ----------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------P   84 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------c
Confidence            356899999999999999999999987          88889999999999999999999999999998874       3


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh-hHHH------HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-LLVT------SLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~  273 (510)
                      .....+..+|.+|...|++++|+..+++++............ ....      ........+...+.+.+|...+.+++.
T Consensus        85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_          85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            345568999999999999999999999998753221000000 0001      111222334556778889999999887


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010446          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  353 (510)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (510)
                      +.     ++ .....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..|+
T Consensus       165 ~~-----p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  230 (323)
T d1fcha_         165 LD-----PT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYR  230 (323)
T ss_dssp             HS-----TT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             Hh-----hc-ccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHH
Confidence            62     11 223567889999999999999999999999875        34556789999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC---CChhHHHHHHHHHHHHHhccC
Q 010446          354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK---EHPSFVTHLLNLAASYSRSKN  430 (510)
Q Consensus       354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~  430 (510)
                      +++++       .|+.   ..++.++|.+|...|++++|+..|++++++.....+.   .......++..++.++...|+
T Consensus       231 ~al~~-------~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~  300 (323)
T d1fcha_         231 RALEL-------QPGY---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  300 (323)
T ss_dssp             HHHHH-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHH-------hhcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCC
Confidence            99987       3333   4577899999999999999999999999987543221   112223456677888888888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010446          431 FVEAERLLRICLDIMT  446 (510)
Q Consensus       431 ~~~A~~~~~~al~~~~  446 (510)
                      .+.+.....+.++...
T Consensus       301 ~d~~~~~~~~~l~~l~  316 (323)
T d1fcha_         301 SDAYGAADARDLSTLL  316 (323)
T ss_dssp             GGGHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhCHHHHH
Confidence            7766666555554433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-18  Score=157.15  Aligned_cols=261  Identities=10%  Similarity=-0.020  Sum_probs=208.5

Q ss_pred             ChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHh
Q 010446          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESR  236 (510)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~  236 (510)
                      .|+...++..+|.++...+.+++|+..+++++.+.       |....+++..|.++...| ++++|+.+++++++.    
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~----  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----
Confidence            67888999999999999999999999999999885       666777999999999887 599999999999986    


Q ss_pred             cCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                          +|....++.++|.++..+|++++|+..+.+++++        .|....++.++|.++...|++++|+..+++++++
T Consensus       108 ----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         108 ----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             ----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                3666889999999999999999999999999998        6777899999999999999999999999999986


Q ss_pred             HHHHcCCCChHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH
Q 010446          317 YTKVYGENDGRVGMAMCSLAHAKCANGN------AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ  390 (510)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  390 (510)
                              +|....+++++|.++...+.      +++|+..+.+++.+       .|++   ..++..++.++... ..+
T Consensus       176 --------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~-------~P~~---~~~~~~l~~ll~~~-~~~  236 (315)
T d2h6fa1         176 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-------VPHN---ESAWNYLKGILQDR-GLS  236 (315)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHTTT-CGG
T ss_pred             --------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh-------CCCc---hHHHHHHHHHHHhc-ChH
Confidence                    46666789999999988776      67899999999887       3444   34567788876554 468


Q ss_pred             HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHH
Q 010446          391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  466 (510)
Q Consensus       391 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  466 (510)
                      ++...+++++++..     . +....++..++.+|...  ++.+.+...+.+++++.......-+|....-|..++..
T Consensus       237 ~~~~~~~~~~~l~~-----~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         237 KYPNLLNQLLDLQP-----S-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  308 (315)
T ss_dssp             GCHHHHHHHHHHTT-----T-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-----C-cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            88888888877532     1 22334556677776543  66677888888888876654333345444444454443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.6e-18  Score=154.48  Aligned_cols=243  Identities=12%  Similarity=0.035  Sum_probs=202.2

Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHH
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILEL  277 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~  277 (510)
                      .|....++..+|.++...+.+++|+..+++++++        .|....++.+.|.++...| ++++|+.++++++++   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            4788888999999999999999999999999997        3666889999999999987 599999999999998   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (510)
                           +|....++.++|.++..+|++++|+..+.+++++        +|....++.++|.++...|++++|+..++++++
T Consensus       108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             -----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                 6778999999999999999999999999999986        466678999999999999999999999999999


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCH
Q 010446          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGR------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  431 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  431 (510)
                      +       .|.+   ..+|.++|.++...+.      +++|+..+.+++.+        .|....++..++.++...| .
T Consensus       175 ~-------~p~n---~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~-~  235 (315)
T d2h6fa1         175 E-------DVRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRG-L  235 (315)
T ss_dssp             H-------CTTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTC-G
T ss_pred             H-------CCcc---HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcC-h
Confidence            8       3333   4577899999988877      46888888888875        3556678888888876654 5


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHh
Q 010446          432 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIA  490 (510)
Q Consensus       432 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~  490 (510)
                      .++...+++++++.     +. +....++..++.+|..  .++.+.+...+.+++++.+..
T Consensus       236 ~~~~~~~~~~~~l~-----~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l  290 (315)
T d2h6fa1         236 SKYPNLLNQLLDLQ-----PS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL  290 (315)
T ss_dssp             GGCHHHHHHHHHHT-----TT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----CC-cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            88888888887752     22 2234455667777754  477888999999999987764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.6e-17  Score=146.53  Aligned_cols=229  Identities=12%  Similarity=0.091  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (510)
                      .+..|...|.+|...|++++|+..|.+++++....  .+.+..+.++.++|.+|...|++++|+.++++++++.....  
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~--  111 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--  111 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc--
Confidence            35567788999999999999999999999998774  44567789999999999999999999999999999988753  


Q ss_pred             CCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010446          282 ESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (510)
                      .......++..+|.+|.. .|++++|+.+|++++++....  ...+....++.++|.++..+|++++|+..|++++....
T Consensus       112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~  189 (290)
T d1qqea_         112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence            344556788899998865 699999999999999988765  23455778899999999999999999999999988754


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHHHHHHHH
Q 010446          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAERLL  438 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~  438 (510)
                      ..   ..........+...+.++...|+++.|...++++..+.....   .......+..+..++..  .+.+++|+..|
T Consensus       190 ~~---~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~---~sre~~~l~~l~~a~~~~d~e~~~eai~~y  263 (290)
T d1qqea_         190 GN---RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEF  263 (290)
T ss_dssp             SC---TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             cc---hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            32   222334455677889999999999999999999876643321   11112344556666654  34578888877


Q ss_pred             HHHH
Q 010446          439 RICL  442 (510)
Q Consensus       439 ~~al  442 (510)
                      .++.
T Consensus       264 ~~~~  267 (290)
T d1qqea_         264 DNFM  267 (290)
T ss_dssp             TTSS
T ss_pred             HHHh
Confidence            6543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.8e-17  Score=146.27  Aligned_cols=223  Identities=13%  Similarity=0.026  Sum_probs=172.2

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 010446          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (510)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (510)
                      ...|.+|...|++++|+++|.+++++..+..  +.+..+.++.++|.+|..+|++++|+..+++++++....  ......
T Consensus        41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~  116 (290)
T d1qqea_          41 VQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRG  116 (290)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhH
Confidence            3447788899999999999999999987754  456678899999999999999999999999999998876  234456


Q ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010446          329 GMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (510)
Q Consensus       329 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (510)
                      ..++.++|.++.. .|++++|+.+|++++++....    ..++....++.++|.++...|++++|+..|++++.......
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~----~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc----CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            7788999998865 699999999999999998763    45566778899999999999999999999999887653321


Q ss_pred             CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh--cCChHHHHHHHHHH
Q 010446          408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEA  483 (510)
Q Consensus       408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a  483 (510)
                       .........+...+.++...|++..|...++++.++.....   .......+..+..++..  .+.+++|+..|.++
T Consensus       193 -~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~---~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         193 -LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             -TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             -hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             12334456677889999999999999999999887542221   11112344566666654  34577777776543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.5e-17  Score=143.42  Aligned_cols=220  Identities=9%  Similarity=0.035  Sum_probs=155.1

Q ss_pred             ChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHh
Q 010446          177 DLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG  256 (510)
Q Consensus       177 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  256 (510)
                      +.+.|+..+++++...   ....+..+.+++.+|.+|...|++++|+..|++++++        +|..+.++.++|.+|.
T Consensus        14 ~~e~al~~~~e~l~~~---~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~   82 (259)
T d1xnfa_          14 QQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLT   82 (259)
T ss_dssp             HHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh---hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHH
Confidence            3455555565554432   3345677888999999999999999999999999987        2455778999999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 010446          257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA  336 (510)
Q Consensus       257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  336 (510)
                      ..|++++|+..|++++++        .|....++.++|.++...|++++|+..++++++..        |........++
T Consensus        83 ~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~  146 (259)
T d1xnfa_          83 QAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------PNDPFRSLWLY  146 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred             HHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--------cccHHHHHHHH
Confidence            999999999999999998        56667899999999999999999999999999862        22233445556


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCCh
Q 010446          337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHP  412 (510)
Q Consensus       337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~  412 (510)
                      ..+...+..+.+..........       .+.....     .+...+...    +..+.+...+......        .+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  206 (259)
T d1xnfa_         147 LAEQKLDEKQAKEVLKQHFEKS-------DKEQWGW-----NIVEFYLGNISEQTLMERLKADATDNTSL--------AE  206 (259)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHS-------CCCSTHH-----HHHHHHTTSSCHHHHHHHHHHHCCSHHHH--------HH
T ss_pred             HHHHHhhhHHHHHHHHHHhhcc-------chhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------Cc
Confidence            6666666555544443333222       2222221     122222111    1222333333332222        24


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010446          413 SFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (510)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (510)
                      ....++..+|.+|...|++++|+.+|++++.
T Consensus       207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         207 HLSETNFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5567888999999999999999999999987

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=6.1e-18  Score=154.29  Aligned_cols=277  Identities=10%  Similarity=-0.029  Sum_probs=211.4

Q ss_pred             HHHHHHHcCC-hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----------hCChHHHHHHHHHHHHhh
Q 010446          124 EVKSMIMMGN-KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----------IGDLKFVQSLLDMMSGIV  192 (510)
Q Consensus       124 ~~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~  192 (510)
                      ........|. .++|+++++++++.          .|+...+|...+.++..          .|++++|+.++++++...
T Consensus        34 ~~~~~~~~~~~~~~al~~~~~~l~~----------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~  103 (334)
T d1dcea1          34 AVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  103 (334)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC
Confidence            3333445555 48999999999988          77777777666655443          444778888888887653


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhhhc--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010446          193 DSLKDDEPLLDAILLHMGSMYSTLEN--YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR  270 (510)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  270 (510)
                             |....++..+|.++...++  +++|+..+.++++..       .......+...|.++...|.+++|+..+++
T Consensus       104 -------pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~  169 (334)
T d1dcea1         104 -------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDS  169 (334)
T ss_dssp             -------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred             -------CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-------chhhhhhhhHHHHHHHhccccHHHHHHHHH
Confidence                   4445557888888777664  899999999999862       122233356788999999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHH
Q 010446          271 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  350 (510)
Q Consensus       271 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  350 (510)
                      ++++        +|....+++++|.++...|++++|...+.+++.+....            ......+...+..+++..
T Consensus       170 ~i~~--------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~a~~  229 (334)
T d1dcea1         170 LITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------LELVQNAFFTDPNDQSAW  229 (334)
T ss_dssp             TTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH------------HHHHHHHHHHCSSCSHHH
T ss_pred             HHHc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH------------HHHHHHHHHhcchhHHHH
Confidence            9876        67778999999999999999999999998888875322            122333455677888999


Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010446          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (510)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (510)
                      .+.+++..       .+....   .+..++.++...|++.+|+..+.+++.        .+|....++..+|.+|...|+
T Consensus       230 ~~~~~l~~-------~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~  291 (334)
T d1dcea1         230 FYHRWLLG-------RAEPLF---RCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLY  291 (334)
T ss_dssp             HHHHHHHS-------CCCCSS---SCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGG
T ss_pred             HHHHHHHh-------Ccchhh---HHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCC
Confidence            88888765       222221   235678888889999999999888765        578888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhc
Q 010446          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  470 (510)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  470 (510)
                      +++|+.+|++++++        +|.....|..|+..+...
T Consensus       292 ~~eA~~~~~~ai~l--------dP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         292 EKETLQYFSTLKAV--------DPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             HHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--------CcccHHHHHHHHHHHhHh
Confidence            99999999999986        577777778887777643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=9.8e-17  Score=140.55  Aligned_cols=226  Identities=15%  Similarity=0.053  Sum_probs=157.3

Q ss_pred             hcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 010446          217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  296 (510)
Q Consensus       217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  296 (510)
                      ++.+.|+..+++++...    ...++..+.+++.+|.+|...|++++|+..|++++++        .|..+.++.++|.+
T Consensus        13 ~~~e~al~~~~e~l~~~----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~   80 (259)
T d1xnfa_          13 LQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIY   80 (259)
T ss_dssp             HHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchH
Confidence            45556666666654321    1234567889999999999999999999999999998        56778899999999


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 010446          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (510)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (510)
                      |..+|++++|+..|++++++        +|....++.++|.++...|++++|+..++++++.       .|....   ..
T Consensus        81 ~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~---~~  142 (259)
T d1xnfa_          81 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPNDPF---RS  142 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHH---HH
T ss_pred             HHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-------ccccHH---HH
Confidence            99999999999999999986        3445568899999999999999999999999987       333322   23


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhh
Q 010446          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  456 (510)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  456 (510)
                      ..++..+...+..+.+..+......     .....+........++. ....+.++.+...+......        .+..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~  208 (259)
T d1xnfa_         143 LWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHL  208 (259)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhc-----cchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------Cccc
Confidence            4456666666655444443333222     11222222111111111 11222344444444443332        3555


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010446          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (510)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  486 (510)
                      ..++..+|.+|..+|++++|+.+|++++..
T Consensus       209 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         209 SETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            678899999999999999999999999863

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.2e-17  Score=148.62  Aligned_cols=254  Identities=8%  Similarity=-0.067  Sum_probs=197.2

Q ss_pred             hhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHH----------HHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChh
Q 010446          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM----------GSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL  243 (510)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  243 (510)
                      ..+..++|+.++++++...    ++.   ..+|+..          +..+...|++.+|+.++++++..        +|.
T Consensus        41 ~~~~~~~al~~~~~~l~~~----P~~---~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--------~pk  105 (334)
T d1dcea1          41 AGELDESVLELTSQILGAN----PDF---ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPK  105 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTT
T ss_pred             cccccHHHHHHHHHHHHHC----CCc---HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--------CCC
Confidence            3344589999999998764    332   3333333          33455566788999999988875        355


Q ss_pred             HHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 010446          244 LVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (510)
Q Consensus       244 ~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (510)
                      ...++..+|.++...+  ++++|+..++++++.       ++......+..+|.++...+.+++|+..+++++.+     
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~-----  173 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA-------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-----  173 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-----
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh-------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc-----
Confidence            5677888888877766  489999999999997       23333334567889999999999999999999874     


Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010446          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (510)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (510)
                         +|....++.++|.++...|++++|...+.+++.+....              ......+...+..+++...+.+++.
T Consensus       174 ---~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         174 ---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE--------------LELVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH--------------HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH--------------HHHHHHHHHhcchhHHHHHHHHHHH
Confidence               56667889999999999999999999988888875431              2344456677888899999988875


Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 010446          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (510)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (510)
                      .        .|.....+..+|.++...|++.+|+..+.+++.        .+|....++..+|.++...|++++|+++|+
T Consensus       237 ~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~  300 (334)
T d1dcea1         237 G--------RAEPLFRCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLYEKETLQYFS  300 (334)
T ss_dssp             S--------CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred             h--------CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3        233334556778889999999999999998876        578889999999999999999999999999


Q ss_pred             HHHHHH
Q 010446          482 EALYIR  487 (510)
Q Consensus       482 ~al~~~  487 (510)
                      +++++.
T Consensus       301 ~ai~ld  306 (334)
T d1dcea1         301 TLKAVD  306 (334)
T ss_dssp             HHHHHC
T ss_pred             HHHHHC
Confidence            999863

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-14  Score=137.41  Aligned_cols=282  Identities=9%  Similarity=-0.058  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH
Q 010446          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS  214 (510)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (510)
                      -+|++++++|+++          .|+.+.++..+|.++...|++++|   |++++...       |..+......+.++ 
T Consensus         3 ~eA~q~~~qA~~l----------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d-------p~~a~~~~~e~~Lw-   61 (497)
T d1ya0a1           3 LQSAQYLRQAEVL----------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD-------LEYALDKKVEQDLW-   61 (497)
T ss_dssp             HHHHHHHHHHHHH----------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC-------HHHHHHHTHHHHHH-
T ss_pred             HHHHHHHHHHHHc----------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC-------hhhHHHHhHHHHHH-
Confidence            3789999999998          788888899999999999999877   77776543       44444333222222 


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 010446          215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  294 (510)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  294 (510)
                       ...|..+++.+++..+..   ...+....  ....++.++...+.|+.|+..+.+++.+        .+.....+.++|
T Consensus        62 -~~~y~~~ie~~r~~~k~~---~~~~~~~~--~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg  127 (497)
T d1ya0a1          62 -NHAFKNQITTLQGQAKNR---ANPNRSEV--QANLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLG  127 (497)
T ss_dssp             -HHHTHHHHHHHHHHHSCS---SCTTTTHH--HHHHHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred             -HHHHHHHHHHHHHhcccc---cCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhH
Confidence             223445555555443210   00111111  1122344445555666666665555544        345567788999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH
Q 010446          295 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN  374 (510)
Q Consensus       295 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  374 (510)
                      ..+...|++++|...+.+++...          ...++.++|.++...|++++|+.+|++|+.+       .|+.   ..
T Consensus       128 ~~~~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-------~P~~---~~  187 (497)
T d1ya0a1         128 IISNKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-------VPSN---GQ  187 (497)
T ss_dssp             ---------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTB---SH
T ss_pred             HHHHhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCc---hH
Confidence            99999999999999999988742          2357889999999999999999999999998       3333   45


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCCh
Q 010446          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (510)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (510)
                      .++++|.++...|++.+|+.+|.+++.+        .+....++.+|+.++....+..++..            .....+
T Consensus       188 ~~~~Lg~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~~~~~~~~------------~~~~~~  247 (497)
T d1ya0a1         188 PYNQLAILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKALESRDEVK------------TKWGVS  247 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHTTSCCCCC------------SSCCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhhhhhhhhc------------cccccc
Confidence            6799999999999999999999999864        23456778888888765433211100            001122


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 010446          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  491 (510)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  491 (510)
                      ........+..+++..+..+......++.+.......
T Consensus       248 ~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l  284 (497)
T d1ya0a1         248 DFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELL  284 (497)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            2333344444555566666666666666665555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.9e-13  Score=108.01  Aligned_cols=136  Identities=16%  Similarity=0.138  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      -.+++.|..+...|++++|++.|.++             .+..+.+++++|.+|..+|++++|+..|++++++.      
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~i-------------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld------   66 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSAV-------------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD------   66 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS-------------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhc-------------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh------
Confidence            35778899999999999999998753             22345689999999999999999999999999875      


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc-------C-CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY-------G-KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR  270 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  270 (510)
                       |..+.+++++|.++..+|++++|+..|++++...+...       + ........+++++|.++...|++++|++.+.+
T Consensus        67 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~  145 (192)
T d1hh8a_          67 -KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  145 (192)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence             55566799999999999999999999999987532210       0 00113467889999999999999999999999


Q ss_pred             HHHH
Q 010446          271 VITI  274 (510)
Q Consensus       271 al~~  274 (510)
                      ++.+
T Consensus       146 A~~~  149 (192)
T d1hh8a_         146 ATSM  149 (192)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            8876

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=130.40  Aligned_cols=231  Identities=8%  Similarity=0.002  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC
Q 010446          180 FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG  259 (510)
Q Consensus       180 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  259 (510)
                      +|++++++++.+.       |..+.++.++|.++..+|++++|   |++++..        +|..+..+...+...  ..
T Consensus         4 eA~q~~~qA~~l~-------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw--~~   63 (497)
T d1ya0a1           4 QSAQYLRQAEVLK-------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLW--NH   63 (497)
T ss_dssp             HHHHHHHHHHHHH-------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHH--HH
T ss_pred             HHHHHHHHHHHcC-------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHH--HH
Confidence            7889999999886       45555678899999999999886   7888764        244444333222222  11


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCcchHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 010446          260 RAKKAVEIYHRVITILELNRGTESADLVL-PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (510)
Q Consensus       260 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (510)
                      .|..+++.+++..+.      ...+.... ....++.++...+.|+.|+..+.+++.+        .+.....+.++|..
T Consensus        64 ~y~~~ie~~r~~~k~------~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~~  129 (497)
T d1ya0a1          64 AFKNQITTLQGQAKN------RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGII  129 (497)
T ss_dssp             HTHHHHHHHHHHHSC------SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred             HHHHHHHHHHHhccc------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHHH
Confidence            234445555444321      11111111 1222344444455555555555555442        35566778899999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010446          339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  418 (510)
Q Consensus       339 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  418 (510)
                      +...|++++|...+.+++....            ..++.++|.++...|++++|+.+|++|+.+        .|.....+
T Consensus       130 ~~~~~~~~~A~~~~~~al~~~~------------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~  189 (497)
T d1ya0a1         130 SNKQTHTSAIVKPQSSSCSYIC------------QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPY  189 (497)
T ss_dssp             -------------CCHHHHHHH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHH
T ss_pred             HHhCCCHHHHHHHHHHHhCCCH------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHH
Confidence            9999999999999999887632            246788999999999999999999999986        46777899


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCC
Q 010446          419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR  472 (510)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  472 (510)
                      ++||.++...|++.+|+.+|.+++.+        .+....++.+|+.++....+
T Consensus       190 ~~Lg~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         190 NQLAILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999973        35567788999998876543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6e-13  Score=109.31  Aligned_cols=134  Identities=13%  Similarity=0.125  Sum_probs=111.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                      +++.|..+...|++++|+..|.++        .+.   .+.+++++|.+|..+|++++|+..|++++++        .|.
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i--------~~~---~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~   68 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV--------QDP---HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH   68 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS--------SSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc--------CCC---CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhh
Confidence            557799999999999999988753        112   2467899999999999999999999999998        577


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH-------cC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010446          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-------YG-ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (510)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (510)
                      .+.++.++|.++..+|++++|+..|++++...+..       .+ ........++.++|.++...|++++|.+.+.+++.
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            78999999999999999999999999998753211       00 01122457889999999999999999999999887


Q ss_pred             H
Q 010446          358 V  358 (510)
Q Consensus       358 ~  358 (510)
                      +
T Consensus       149 ~  149 (192)
T d1hh8a_         149 M  149 (192)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.9e-11  Score=97.04  Aligned_cols=128  Identities=13%  Similarity=0.068  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      +..+...|..|+..|+|++|+.+|++++++        .|....++.++|.++..+|++++|+..|++++++        
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------   73 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------   73 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------
Confidence            455677899999999999999999999998        5778899999999999999999999999999986        


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH--HHHcCChHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL--LHIVGRGQEGRELLEE  398 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~  398 (510)
                      +|....++..+|.++...|++++|+..+++++.+       .|+++..   +..++.+  ....+.+++|+...+.
T Consensus        74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-------~p~~~~~---~~~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_          74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKDA---KMKYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHHH---HHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            4566688999999999999999999999999998       4455443   2334443  3334445555554333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.2e-12  Score=94.80  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      +..+...|..++..|++++|+..|+++++.          .|..+.++..+|.+|...|++++|+..+++++.+.     
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----   67 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKL----------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-----   67 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCcchhhhhcccccccccccccccchhhhhHHHhc-----
Confidence            455778999999999999999999999998          88889999999999999999999999999999875     


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                        |....+++++|.++..+|++++|+..|+++++.
T Consensus        68 --p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          68 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             --cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence              444556899999999999999999999999975

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.38  E-value=2.4e-11  Score=96.06  Aligned_cols=138  Identities=17%  Similarity=0.066  Sum_probs=104.3

Q ss_pred             HHHHHHHH--HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          244 LVTSLLGM--AKVLGSIGRAKKAVEIYHRVITILELNRGTE----SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       244 ~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (510)
                      .+.++..+  |..++..|+|++|+..|++++++.+......    .+..+.++.++|.+|..+|++++|+..+++++.+.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            34455544  7788899999999999999999976653211    12346789999999999999999999999999998


Q ss_pred             HHHcCCC---ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH
Q 010446          318 TKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH  384 (510)
Q Consensus       318 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~  384 (510)
                      .+.....   .+....+++++|.+|...|++++|+..|++++++.++.   .............++..+.
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~---~~~~~~~~~~~~~~~~~l~  152 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER---KGETPGKERMMEVAIDRIA  152 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC---CSCCTTHHHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh---hchHHHHHHHHHHHHHHHH
Confidence            8764322   23456688999999999999999999999999998874   3333333334344444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-11  Score=92.28  Aligned_cols=96  Identities=18%  Similarity=0.153  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 010446          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (510)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (510)
                      -+...|..++..|++++|+..|+++++.        .|....++.++|.+|...|++++|+..+.+++++        .|
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p   68 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KP   68 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------cc
Confidence            3567899999999999999999999987        5777889999999999999999999999999986        35


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ....++.++|.++..+|++++|+..|+++++.
T Consensus        69 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             chhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            55678999999999999999999999999986

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.2e-11  Score=90.85  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCC
Q 010446          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (510)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (510)
                      ...-+.|..++..|+|++|+.+|++++++          .|..+.++.++|.+|..+|++++|+..+++++.+.......
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~   74 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKEL----------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED   74 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH
Confidence            34567899999999999999999999998          78888999999999999999999999999999998776777


Q ss_pred             chHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      ....+.++..+|.++...+++++|+.+|++++..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            7778889999999999999999999999999875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3e-11  Score=95.94  Aligned_cols=132  Identities=9%  Similarity=0.043  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc
Q 010446          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (510)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (510)
                      .....+...|..++..|+|++|+..|++++++          .|..+.++..+|.++...|++++|+..|++++++.   
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---   74 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---   74 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc----------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc---
Confidence            34556788999999999999999999999998          88899999999999999999999999999999875   


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HhhcCCHHHHHHHHHHHH
Q 010446          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV--LGSIGRAKKAVEIYHRVI  272 (510)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al  272 (510)
                          |....++..+|.++...|++++|+..+++++.+.     ++++   .++..++.+  ....+.+++|+.......
T Consensus        75 ----p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~-----p~~~---~~~~~l~~~~~~~~~~~~~~a~~~~~~~~  141 (159)
T d1a17a_          75 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDK---DAKMKYQECNKIVKQKAFERAIAGDEHKR  141 (159)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCH---HHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence                4555678999999999999999999999999872     3333   334444444  334455666655444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.3e-11  Score=90.29  Aligned_cols=105  Identities=9%  Similarity=0.156  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      +..+..+|..++..|+|++|+.+|++++++        .|....++.++|.+|..+|++++|+..+++++++..... ..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HH
Confidence            455778999999999999999999999998        556688999999999999999999999999999876642 33


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                      ....+.++..+|.++...+++++|+.+|++++..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            4557789999999999999999999999999876

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.34  E-value=1e-09  Score=95.28  Aligned_cols=221  Identities=15%  Similarity=0.175  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHhc
Q 010446          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      .+++.+|..+...|++.+|+++|+++.+.          ....+...||.+|..    ..++..|..+++.+...     
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-----   67 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----   67 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-----
Confidence            35889999999999999999999999753          225678899999987    67999999999887654     


Q ss_pred             CCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVEL  351 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  351 (510)
                           ....+...+|.++..    .++.+.|...++++.+.       ..   ..+...++..+..    ......|...
T Consensus        68 -----~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-------g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~  132 (265)
T d1ouva_          68 -----NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY---AEGCASLGGIYHDGKVVTRDFKKAVEY  132 (265)
T ss_dssp             -----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             -----cccchhhccccccccccccchhhHHHHHHHhhhhhh-------hh---hhHHHhhcccccCCCcccchhHHHHHH
Confidence                 234566778877765    46788899999888762       22   2344556666664    4556777777


Q ss_pred             HHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 010446          352 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR  427 (510)
Q Consensus       352 ~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  427 (510)
                      +.+....         ..   ...+..+|.++...    .+...+..+++.+.+.          ....+..++|.+|..
T Consensus       133 ~~~~~~~---------~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~~  190 (265)
T d1ouva_         133 FTKACDL---------ND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHH  190 (265)
T ss_dssp             HHHHHHT---------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHH
T ss_pred             hhhhhcc---------cc---cchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhccc
Confidence            7665442         11   23557889999873    4455666666665542          234678889999987


Q ss_pred             ----ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 010446          428 ----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  486 (510)
Q Consensus       428 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  486 (510)
                          ..++++|+.+|+++.+.       .+   ..++.+||.+|..    ..++++|.++|++|.+.
T Consensus       191 g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         191 GEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CcccccchhhhhhhHhhhhcc-------cC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence                67899999999999772       22   4577999999986    44899999999999875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.1e-11  Score=96.02  Aligned_cols=131  Identities=18%  Similarity=0.214  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .+..+...|..++..|+|++|+..|++++..........+       +....++.++|.+|...|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            3455778999999999999999999999998644322221       134567889999999999999999999999998


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHH
Q 010446          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA  348 (510)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  348 (510)
                              .|....++..+|.+|..+|++++|+..|++++++     .|+++   .+...++.+....++..+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~---~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNK---AAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCH---HHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHHHHHHH
Confidence                    5677899999999999999999999999999986     23343   4455566666555444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.33  E-value=9e-11  Score=92.64  Aligned_cols=119  Identities=13%  Similarity=0.227  Sum_probs=97.9

Q ss_pred             HHHHHHH--HHHHHhhCChHHHHHHHHHHHHhhhhcCCCc-----hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446          162 VAILDII--ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE-----PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (510)
Q Consensus       162 ~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (510)
                      +.++..+  |..++..|+|++|+..|++++.+....++..     +..+.++.++|.+|..+|++++|+..+++++.+..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4444444  7788899999999999999999987654322     33567799999999999999999999999999987


Q ss_pred             HhcCCC---ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010446          235 SRYGKT---SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (510)
Q Consensus       235 ~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (510)
                      +.....   .+....+++++|.+|..+|++++|+..|++++++.++..+
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            753322   2356678999999999999999999999999999887653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.6e-10  Score=92.56  Aligned_cols=131  Identities=10%  Similarity=0.035  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc--------hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE--------PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      .+..+...|..++..|+|++|+..|++++..........        +....++.++|.+|..+|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            356778899999999999999999999998865432221        223456788999999999999999999999987


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 010446          233 LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE  307 (510)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  307 (510)
                              +|....++..+|.+|..+|++++|+..|++++++        .|....+...++.+....++..+..
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                    3556788999999999999999999999999998        4555667777888776666555443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.28  E-value=2.3e-09  Score=92.96  Aligned_cols=222  Identities=15%  Similarity=0.143  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhc
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRY  237 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~  237 (510)
                      |.+++.+|..+...||+++|+++|+++.+.    +  +   ..+.+.||.+|..    ..++..|..+++.+...     
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g--~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-----   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----K--E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----C--C---HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-----
Confidence            568899999999999999999999998653    1  1   2457889999987    67899999999987653     


Q ss_pred             CCCChhHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHH
Q 010446          238 GKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESV  309 (510)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  309 (510)
                        .+   ..+...+|.++..    .++.+.|...++++.+.          ....+...++..+..    ......|...
T Consensus        68 --~~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~----------g~~~a~~~l~~~~~~~~~~~~~~~~a~~~  132 (265)
T d1ouva_          68 --NY---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTRDFKKAVEY  132 (265)
T ss_dssp             --TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             --cc---cchhhccccccccccccchhhHHHHHHHhhhhhh----------hhhhHHHhhcccccCCCcccchhHHHHHH
Confidence              22   3445667777654    57889999999988753          123455667766665    3445666666


Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 010446          310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  385 (510)
Q Consensus       310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~  385 (510)
                      +.+....          .....+..+|..+..    ..+...+..+++.+.+.        . +   ..+..++|.+|..
T Consensus       133 ~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--------g-~---~~A~~~lg~~y~~  190 (265)
T d1ouva_         133 FTKACDL----------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------K-D---SPGCFNAGNMYHH  190 (265)
T ss_dssp             HHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T-C---HHHHHHHHHHHHH
T ss_pred             hhhhhcc----------cccchhhhhhhhhccCCCcccccccchhhhhccccc--------c-c---cccccchhhhccc
Confidence            6655441          223567788988886    45667777777776643        1 1   3456889999987


Q ss_pred             ----cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHH
Q 010446          386 ----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDI  444 (510)
Q Consensus       386 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  444 (510)
                          ..++++|+.+|+++.+.       .   ...++.+||.+|..    ..++++|.++|+++.+.
T Consensus       191 g~~~~~d~~~A~~~~~~aa~~-------g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         191 GEGATKNFKEALARYSKACEL-------E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CcccccchhhhhhhHhhhhcc-------c---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence                67899999999998663       2   24577899999986    44899999999999874

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=7.3e-11  Score=97.96  Aligned_cols=101  Identities=19%  Similarity=0.158  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      +..+...|..++..|+|++|+.+|++++++        .|..+.++.++|.+|...|++++|+..|++++++        
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence            445778899999999999999999999998        5677899999999999999999999999999874        


Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010446          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (510)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (510)
                      +|....++.++|.+|..+|++++|+..|++++.+...
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            5666788999999999999999999999999998765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=6.3e-10  Score=98.91  Aligned_cols=226  Identities=9%  Similarity=-0.031  Sum_probs=160.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-------hh-------CChHHHHHHHHHHHHhhhhcCCCc
Q 010446          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-------YI-------GDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~-------g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      .+.+...|++|+..          .|..+.+|...+..+.       ..       +..++|..++++++...   .   
T Consensus        32 ~~Rv~~vyerAl~~----------~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~---~---   95 (308)
T d2onda1          32 TKRVMFAYEQCLLV----------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---L---   95 (308)
T ss_dssp             HHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT---T---
T ss_pred             HHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc---C---
Confidence            34566678888776          3444445555444332       22       33466667777766432   2   


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      |.....+...+......|++++|...|++++...     +  .....++...+......|+++.|...|+++++.     
T Consensus        96 p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-----~--~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~-----  163 (308)
T d2onda1          96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----D--IDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----  163 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----S--SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-----c--CChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----
Confidence            2223457788899999999999999999988631     1  223445778888999999999999999999865     


Q ss_pred             CCCCcchHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010446          280 GTESADLVLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (510)
Q Consensus       280 ~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (510)
                         .|.....+...|... ...|+.+.|...|++++...        |.....+...+......|+++.|..+|++++..
T Consensus       164 ---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         164 ---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             ---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             ---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence               344456666777664 44689999999999999853        333466777888899999999999999999876


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010446          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (510)
                      ..      .++.....++..........|+.+.+..+++++.+.+.
T Consensus       233 ~~------~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         233 GS------LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             SS------SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             CC------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            21      12222334566677777888999999999999887764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.24  E-value=1.3e-10  Score=91.18  Aligned_cols=124  Identities=10%  Similarity=0.016  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch---------HHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 010446          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP---------LLDAILLHMGSMYSTLENYEKSMLVYQRVI  230 (510)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  230 (510)
                      ..+..+...|..++..|+|.+|+..|++++...........         ....++.++|.+|..+|++++|+.++++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            34556778899999999999999999999987654332222         124567899999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 010446          231 NVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  299 (510)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  299 (510)
                      ++        +|....+++.+|.++..+|++++|+..|++++++        .|....+...++.+...
T Consensus        95 ~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          95 KI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHH
T ss_pred             cc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence            86        3566789999999999999999999999999998        45556666666665544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.24  E-value=4.2e-11  Score=88.38  Aligned_cols=93  Identities=11%  Similarity=-0.063  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChh
Q 010446          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (510)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (510)
                      ...+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+.+|++++++        +|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence            367899999999999999999999986        3566789999999999999999999999999996        577


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010446          456 ISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (510)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al  484 (510)
                      ...++..+|.+|..+|++++|++.+++.+
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            78899999999999999999999999875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.24  E-value=2.8e-10  Score=90.93  Aligned_cols=139  Identities=18%  Similarity=0.296  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      +..+...|..++..|+|.+|+..|.+++..........       .+....++.++|.+|..+|++++|+.++++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            45578899999999999999999999998764432211       1235567889999999999999999999999988 


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHH-HHHHHHH
Q 010446          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYKK  354 (510)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~  354 (510)
                             +|....+++.+|.++..+|++++|+..|.+++.+        +|....+...++.+....+.+.+ ....|.+
T Consensus        94 -------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~  158 (168)
T d1kt1a1          94 -------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTYAN  158 (168)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                   5677899999999999999999999999999985        33444556666666655554433 3344444


Q ss_pred             HHH
Q 010446          355 ALR  357 (510)
Q Consensus       355 al~  357 (510)
                      ..+
T Consensus       159 ~f~  161 (168)
T d1kt1a1         159 MFK  161 (168)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.23  E-value=7.4e-11  Score=92.63  Aligned_cols=106  Identities=13%  Similarity=0.177  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCCh--------hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI--------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      +..+...|..++..|+|.+|+..|.+++.+..........        ....++.++|.+|..+|++++|+.++++++++
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            4446788999999999999999999999876443222221        23467889999999999999999999999987


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                              +|....+++.+|.++..+|++++|+..|++++++
T Consensus        97 --------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          97 --------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             --------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             --------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence                    5777899999999999999999999999999987

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=2.1e-11  Score=101.30  Aligned_cols=101  Identities=11%  Similarity=0.035  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCC
Q 010446          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (510)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (510)
                      ...+...|..++..|+|++|+..|++++++          .|..+.++..+|.+|...|++++|+..|++++.+.     
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~----------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-----   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-----   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-----
Confidence            345778999999999999999999999998          88889999999999999999999999999998764     


Q ss_pred             CchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 010446          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES  235 (510)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  235 (510)
                        |....+++++|.+|..+|++++|+..|++++++...
T Consensus        69 --p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          69 --GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence              555667999999999999999999999999998654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=1.4e-10  Score=93.00  Aligned_cols=124  Identities=15%  Similarity=0.169  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (510)
                      +...|..++..|+|.+|+..|.++++.......        ...|....++.++|.+|..+|++++|+..+++++++   
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---  106 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---  106 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh---
Confidence            567788999999999999999999987543211        113566778999999999999999999999999986   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCH
Q 010446          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (510)
                           .|..+.++..+|.+|..+|++++|+..|++++++     .+++   ..+...++.+.......
T Consensus       107 -----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n---~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         107 -----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APED---KAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHH
T ss_pred             -----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHH
Confidence                 5777899999999999999999999999999996     2333   34455555555443333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.20  E-value=8.8e-11  Score=86.62  Aligned_cols=93  Identities=13%  Similarity=0.016  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCch
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (510)
                      .+..|..+.+.|++++|+..+++++..          .|..+.++..+|.++...|++++|+..+++++.+.       |
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p   81 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK----------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------P   81 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc----------ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-------c
Confidence            356888999999999999999999998          88889999999999999999999999999999875       4


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVI  230 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  230 (510)
                      ....++..+|.+|...|++++|++.+++.+
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            456678999999999999999999999875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.20  E-value=3.8e-10  Score=90.11  Aligned_cols=129  Identities=12%  Similarity=0.080  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc--------hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE--------PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      .+..+...|..++..|+|.+|+..|++++..........        +....++.++|.+|..+|++++|+..+++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            456778899999999999999999999998764422221        224556788999999999999999999999986


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 010446          233 LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD  305 (510)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  305 (510)
                              +|....+++.+|.++..+|++++|+..|++++.+        .|....+...++.+....+.+.+
T Consensus        94 --------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          94 --------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHH
Confidence                    3556789999999999999999999999999986        45566777778877766655543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=2.9e-09  Score=94.55  Aligned_cols=224  Identities=13%  Similarity=0.098  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHH--------------hhhcHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010446          179 KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS--------------TLENYEKSMLVYQRVINVLESRYGKTSILL  244 (510)
Q Consensus       179 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (510)
                      +.+..+|++++...    +.++.   +|...+....              ..+..++|...|+++++.       ..|..
T Consensus        33 ~Rv~~vyerAl~~~----~~~~~---lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-------~~p~~   98 (308)
T d2onda1          33 KRVMFAYEQCLLVL----GHHPD---IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKKN   98 (308)
T ss_dssp             HHHHHHHHHHHHHH----TTCHH---HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------TTTTC
T ss_pred             HHHHHHHHHHHHHC----CCCHH---HHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-------cCCCC
Confidence            44566777777665    22333   2433333322              223446666666666542       22344


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      ...+...+..+...|++++|...|++++..       .+.....++...+......|+++.|...|.++++.        
T Consensus        99 ~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-------~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--------  163 (308)
T d2onda1          99 MLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--------  163 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--------
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHH-------hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------
Confidence            556778899999999999999999999864       22233456788889999999999999999999864        


Q ss_pred             ChHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010446          325 DGRVGMAMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (510)
Q Consensus       325 ~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (510)
                      .|.....+...+... ...|+.+.|...|++++...       ++.   ...+...+..+...|++++|..+|++++...
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-------p~~---~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------GDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-------hhh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            222334555666654 44689999999999999874       233   3456778999999999999999999998742


Q ss_pred             HHhhCCCCh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 010446          404 EKYKGKEHP-SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  446 (510)
Q Consensus       404 ~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  446 (510)
                           +.+| .....+..........|+.+.+...++++.+.+.
T Consensus       234 -----~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         234 -----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             -----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             -----CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence                 1222 2345666777777888999999999999988653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=2.9e-10  Score=91.03  Aligned_cols=126  Identities=10%  Similarity=0.051  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHhhCChHHHHHHHHHHHHhhhhc---------CCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 010446          164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL---------KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (510)
Q Consensus       164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (510)
                      .+...|..++..|+|++|+..|++++......         ....|....++.++|.++...|++++|+..+.+++++  
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--  106 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  106 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence            45567888999999999999999988754321         1123566777899999999999999999999999975  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 010446          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD  305 (510)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  305 (510)
                            +|..+.++.++|.+|..+|++++|+..|++++++        .|....+...++.+........+
T Consensus       107 ------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         107 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHH
Confidence                  3566789999999999999999999999999998        34445666777777665544444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2e-10  Score=85.63  Aligned_cols=112  Identities=6%  Similarity=-0.039  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHh---hhcHHHHHHHHHHHHHHHHHhcCCCCh
Q 010446          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST---LENYEKSMLVYQRVINVLESRYGKTSI  242 (510)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~  242 (510)
                      ..++..+...+++++|++.|++++.+.       |....+++++|.++..   .+++++|+..+++++..      ...+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~   69 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCc
Confidence            356677888999999999999999875       3344568999999976   56667788888888753      1224


Q ss_pred             hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 010446          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFI  298 (510)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  298 (510)
                      ....+++++|.+|...|++++|+.+|++++++        .|....+...++.+..
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHH
Confidence            55678999999999999999999999999998        4555666666655543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.7e-10  Score=85.94  Aligned_cols=95  Identities=13%  Similarity=0.068  Sum_probs=81.0

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh---CChHHHHHHHHHHHHhhhhcCCCc
Q 010446          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---GDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      +.+..+...+++++|.+.|++++.+          .|..+.+++++|.++...   +++++|+..+++++...     ..
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~----------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-----~~   68 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA----------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-----SK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-----CH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-----CC
Confidence            4566778899999999999999998          888999999999999874   45567999998877542     23


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (510)
                      +....+++++|.+|...|++++|+.+|++++++
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            555667999999999999999999999999997

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2e-09  Score=76.29  Aligned_cols=85  Identities=14%  Similarity=0.117  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010446          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (510)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (510)
                      .+.+|.+++..|+|++|+.+|++|+++..... ...+..+.++.++|.++...|++++|+.++++++++        .|.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------~P~   78 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DPE   78 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------CcC
Confidence            68999999999999999999999999876542 233466889999999999999999999999999998        566


Q ss_pred             hHHHHHHHHHHHHH
Q 010446          286 LVLPLFSLGSLFIK  299 (510)
Q Consensus       286 ~~~~~~~la~~~~~  299 (510)
                      ...++.+++.+...
T Consensus        79 ~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          79 HQRANGNLKYFEYI   92 (95)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            67888888765543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.7e-09  Score=75.57  Aligned_cols=87  Identities=6%  Similarity=-0.129  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCC
Q 010446          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (510)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (510)
                      ++-++.+|.+++..|+|++|+.+|++++++........+..+.++.++|.++...|++++|+.+|++++++.        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--------   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--------   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--------
Confidence            345689999999999999999999999998876555566778889999999999999999999999999972        


Q ss_pred             hhHHHHHHHHHHHHh
Q 010446          242 ILLVTSLLGMAKVLG  256 (510)
Q Consensus       242 ~~~~~~~~~la~~~~  256 (510)
                      |....++.+++.+..
T Consensus        77 P~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          77 PEHQRANGNLKYFEY   91 (95)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            444567777765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.96  E-value=9.8e-10  Score=84.96  Aligned_cols=112  Identities=7%  Similarity=0.012  Sum_probs=72.3

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHH
Q 010446          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (510)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (510)
                      -+.+.|++|+..|++++++          .|..+.++..+|.++...+++..+..                         
T Consensus         8 ~r~~~fe~A~~~~e~al~~----------~P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------   52 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKS----------NPLDADNLTRWGGVLLELSQFHSISD-------------------------   52 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHSCHHH-------------------------
T ss_pred             HHHccHHHHHHHHHHHHhh----------CCcchHHHHHHHHHHHHhhhhhhhhH-------------------------
Confidence            4556678888888888877          78888888888888776554433221                         


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHHHHH
Q 010446          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-----------RAKKAVEIYHRVITILEL  277 (510)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~  277 (510)
                            ..+.+++|+..|++++++        +|....+++++|.+|..+|           .+++|.++|++++++   
T Consensus        53 ------~~~~~~~Ai~~~~kAl~l--------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---  115 (145)
T d1zu2a1          53 ------AKQMIQEAITKFEEALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---  115 (145)
T ss_dssp             ------HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             ------HHHHHHHHHHHHHHHHHh--------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc---
Confidence                  123445566666666654        2344555666666665544           367888888888887   


Q ss_pred             hcCCCCcchHHHHHHHHHHH
Q 010446          278 NRGTESADLVLPLFSLGSLF  297 (510)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~  297 (510)
                           .|.....+..|+.+.
T Consensus       116 -----~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1         116 -----QPDNTHYLKSLEMTA  130 (145)
T ss_dssp             -----CTTCHHHHHHHHHHH
T ss_pred             -----CCCHHHHHHHHHHHH
Confidence                 455566666666654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.89  E-value=3.5e-09  Score=81.76  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=79.3

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHHHHHhcCC
Q 010446          212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----------GRAKKAVEIYHRVITILELNRGT  281 (510)
Q Consensus       212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  281 (510)
                      .+.+.+.|++|+..|++++++        +|..+.++.++|.++...          +.+++|+..|++++++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            356778899999999999987        366678899999998854          4557899999999987       


Q ss_pred             CCcchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 010446          282 ESADLVLPLFSLGSLFIKEGK-----------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  339 (510)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  339 (510)
                       .|....+++++|.+|..+|+           +++|..+|++++++        +|.....+..|+...
T Consensus        71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTA  130 (145)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred             -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHH
Confidence             67778899999999988764           56777777777765        344444555555543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.73  E-value=1.3e-07  Score=75.47  Aligned_cols=122  Identities=11%  Similarity=-0.122  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--------------ChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010446          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--------------HPSFVTHLLNLAASYSRSKNFVEAERL  437 (510)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (510)
                      ....+...|......|++++|...|.+++.+.......+              .+....++..++.++...|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            355678899999999999999999999998753221000              123446788999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 010446          438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLT  502 (510)
Q Consensus       438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  502 (510)
                      +++++.+        +|....++..++.++...|++.+|+..|+++.+...+-+|-+- ...+..
T Consensus        90 ~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P-~~~l~~  145 (179)
T d2ff4a2          90 LEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP-GPTLRA  145 (179)
T ss_dssp             HHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC-CHHHHH
T ss_pred             HHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc-CHHHHH
Confidence            9999995        5777788999999999999999999999999999888888763 444433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=5.5e-07  Score=71.67  Aligned_cols=116  Identities=10%  Similarity=-0.026  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCC--------------ChhHHHHHHHHHHHHhhcCCHHHHHH
Q 010446          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT--------------SILLVTSLLGMAKVLGSIGRAKKAVE  266 (510)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~  266 (510)
                      .....+...|......|++++|...|.+++.++......+              .+....++..++.++...|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            3455678899999999999999999999998753211110              02345678899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 010446          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (510)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (510)
                      ++++++..        +|....++..++.++...|++.+|+..|+++.....+.+|.+
T Consensus        89 ~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          89 ELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999998        677789999999999999999999999999999877766654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.50  E-value=1.2e-07  Score=80.69  Aligned_cols=127  Identities=10%  Similarity=-0.020  Sum_probs=100.2

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHH
Q 010446          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (510)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (510)
                      ++.....|++++|+..++++++.          .|.++..+..+|.++...|++++|+..++++.++.       |....
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~----------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-------P~~~~   65 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKA----------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-------PEYLP   65 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHT----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------GGGHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCcHH
Confidence            45667899999999999999998          99999999999999999999999999999998875       55555


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010446          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (510)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (510)
                      ++..++.++...+...++...+.+..       -...|.....+...+..+...|++++|...++++.+..
T Consensus        66 ~~~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          66 GASQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            56777777766665555433222111       12234556677788999999999999999999998873

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.37  E-value=4.4e-07  Score=77.15  Aligned_cols=126  Identities=10%  Similarity=-0.042  Sum_probs=98.2

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 010446          211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  290 (510)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  290 (510)
                      .-....|++++|+..++++++.        +|.....+..++.++...|++++|+..+++++++        .|.....+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~   67 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGA   67 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence            3456789999999999999985        4677889999999999999999999999999987        56677777


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010446          291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (510)
Q Consensus       291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (510)
                      ..++.++...+..+++.....+..       -...|.....+...+..+...|++++|...++++.+..
T Consensus        68 ~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          68 SQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            788877765555544333222111       12345556677778999999999999999999998874

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.92  E-value=9.1e-05  Score=55.29  Aligned_cols=110  Identities=17%  Similarity=0.224  Sum_probs=83.9

Q ss_pred             hcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 010446          217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  296 (510)
Q Consensus       217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  296 (510)
                      .++++|+.+|+++.+.       +++   .+...++.  ....++++|+.+++++.+.          ....+.+.||.+
T Consensus         7 kd~~~A~~~~~kaa~~-------g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~~   64 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL-------NEM---FGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHT-------TCT---THHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC-------CCh---hhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHHh
Confidence            5789999999998763       122   23445553  4567899999999998764          235778899999


Q ss_pred             HHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 010446          297 FIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV  358 (510)
Q Consensus       297 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  358 (510)
                      |..    ..++++|..+|+++.+.       .+   ..+..+||.+|..    ..+.++|..+|+++.+.
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhccccchhhHHHHHHHhhhhcc-------Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            886    56789999999999763       23   3567889999987    56899999999998875

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.78  E-value=0.00017  Score=53.79  Aligned_cols=109  Identities=18%  Similarity=0.171  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010446          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (510)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (510)
                      ++++|+.+|+++.+.       + +..    ...+++.  ....+.++|+.+++++.+.          ....+...||.
T Consensus         8 d~~~A~~~~~kaa~~-------g-~~~----a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~   63 (133)
T d1klxa_           8 DLKKAIQYYVKACEL-------N-EMF----GCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHT-------T-CTT----HHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC-------C-Chh----hhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHH
Confidence            678999999998764       1 111    2244543  3456889999999988652          23466788999


Q ss_pred             HHHh----ccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 010446          424 SYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  486 (510)
Q Consensus       424 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  486 (510)
                      +|..    ..++++|..+|+++.+.       .+   ..+...||.+|..    ..+.++|..+|++|.+.
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc-------Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            9876    56789999999999872       23   3567899999887    56899999999999863

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=0.0024  Score=45.45  Aligned_cols=64  Identities=5%  Similarity=-0.086  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010446          204 AILLHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       204 ~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (510)
                      .+.++.|+++...   .+.++++.++++++..       +......+++++|..|+..|+|++|..++++++++
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4467888887744   5677888888877653       22244689999999999999999999999999998

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.0016  Score=46.44  Aligned_cols=65  Identities=15%  Similarity=0.043  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010446          245 VTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (510)
Q Consensus       245 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (510)
                      ..+.++.|.++....   +.++|+.++++++..       ++.....+++.||..|.++|+|++|..++++++++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            567888899888664   456788888777654       23344689999999999999999999999999997

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.65  Score=41.67  Aligned_cols=306  Identities=10%  Similarity=-0.001  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      ..+..+...+..|++.++..+..+.           .+.|-.+.+-+.............+...++++        .++.
T Consensus         8 ~~y~~a~~a~~~~~~~~~~~~~~~L-----------~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~--------~p~~   68 (450)
T d1qsaa1           8 SRYAQIKQAWDNRQMDVVEQMMPGL-----------KDYPLYPYLEYRQITDDLMNQPAVTVTNFVRA--------NPTL   68 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHSGGG-----------TTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhhh-----------cCCCCHHHHHHHHHHhccccCCHHHHHHHHHH--------CCCC
Confidence            4566788888999988776654442           12343333322222222233344444433333        3455


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (510)
                      |....+....-..+...+++...+.++            +..|.....-+..+.+....|+..+|..........     
T Consensus        69 P~~~~lr~~~l~~L~~~~~w~~~~~~~------------~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~-----  131 (450)
T d1qsaa1          69 PPARTLQSRFVNELARREDWRGLLAFS------------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-----  131 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHC------------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-----
T ss_pred             hhHHHHHHHHHHHHHhccCHHHHHHhc------------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence            655444444444455556655433322            223433444556677778888888887665544211     


Q ss_pred             CCCCcc---------------hHHHHHHHHHHHHHcCChHHHHHHHHH-----------HHHHHHH--------HcCCCC
Q 010446          280 GTESAD---------------LVLPLFSLGSLFIKEGKAVDAESVFSR-----------ILKIYTK--------VYGEND  325 (510)
Q Consensus       280 ~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~-----------al~~~~~--------~~~~~~  325 (510)
                      +...|.               ....+..........|++..|......           .+.+...        ...+..
T Consensus       132 ~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~  211 (450)
T d1qsaa1         132 GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGAT  211 (450)
T ss_dssp             SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCC
T ss_pred             CCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCC
Confidence            111111               111222233344455665555444321           1111100        001111


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (510)
                      +. .......+..-....+.+.|...+.......      .............++..+...+..+.|...+......   
T Consensus       212 ~~-~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---  281 (450)
T d1qsaa1         212 DF-TRQMAAVAFASVARQDAENARLMIPSLAQAQ------QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---  281 (450)
T ss_dssp             HH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---
T ss_pred             hh-hhHHHHHHHHHHhccChhHHHHHHHhhhhcc------cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---
Confidence            11 1112233333344567777877776654431      2223333344444555555567777787776654331   


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010446          406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (510)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  485 (510)
                         ......  ....++ .....+++..+...+...        ...........+.+|..+...|+.++|..+|..+..
T Consensus       282 ---~~~~~~--~~w~~~-~al~~~~~~~~~~~~~~l--------~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         282 ---SQSTSL--IERRVR-MALGTGDRRGLNTWLARL--------PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             ---CCCHHH--HHHHHH-HHHHHTCHHHHHHHHHHS--------CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ---ccchHH--HHHHHH-HHHHcCChHHHHHHHHhc--------CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence               122222  222233 345568888888776543        223344566779999999999999999999998754

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=95.47  E-value=0.42  Score=37.56  Aligned_cols=187  Identities=9%  Similarity=-0.010  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010446          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLD  368 (510)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (510)
                      ...+|.+..+.|+|++.....++++++......+-...   -.+.+..+|-. .|....+...+....   .+    ...
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~e---ERnLLsvayKn~i~~~R~s~R~i~~ie---~k----~~~   76 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDE---ERHLLTLCIKHKISDYRTMTSQVLQEQ---TK----QLN   76 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----SCS
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCHH---HHHHHHHHHHHHHhhhHHHHHHHHHHH---Hh----hcc
Confidence            34578899999999999999999998754321111221   11112222211 233333443333211   11    111


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHH
Q 010446          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-----RSKNFVEAERLLRICLD  443 (510)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~  443 (510)
                      ....    ..+..-|.. .-..+=...+...+.+....+.+.....+..+...|..|.     ..|.-++|...|++|..
T Consensus        77 ~~~~----~~~~~~y~~-~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~  151 (220)
T d2o8pa1          77 NDEL----VKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT  151 (220)
T ss_dssp             CHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             chhH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            1111    111111111 1112334445555555555543322112222333344442     56888999999999999


Q ss_pred             HHHHHhCCCChhhHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHhc
Q 010446          444 IMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREIAF  491 (510)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~  491 (510)
                      +....+.|.||.......+.+..++ -.++.++|.+..++|.+.+.+..
T Consensus       152 ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai  200 (220)
T d2o8pa1         152 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQI  200 (220)
T ss_dssp             HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            9988888889998888888887766 47999999999999976665544

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.55  E-value=1.9  Score=34.04  Aligned_cols=59  Identities=17%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHH
Q 010446          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREI  489 (510)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~  489 (510)
                      .++|...|++|+++....+.+.||.......+.+..++ -.|+.++|.+.-++++.-.-.
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~  201 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA  201 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            35799999999999988888999998888888887766 579999999999999876654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.24  E-value=2.9  Score=35.36  Aligned_cols=171  Identities=11%  Similarity=-0.002  Sum_probs=82.2

Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010446          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (510)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (510)
                      ..+|..+...|.|+.|..+|.....               +..+..++...+++..|.+...++          +.   .
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d---------------~~rl~~~~v~l~~~~~avd~~~k~----------~~---~   69 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRLASTLVHLGEYQAAVDGARKA----------NS---T   69 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC---------------HHHHHHHHHTTTCHHHHHHHHHHH----------TC---H
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC---------------HHHHHHHHHhhccHHHHHHHHHHc----------CC---H
Confidence            4567777788888888888865321               234445667788888887776554          11   2


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 010446          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (510)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (510)
                      .++..+........+..-|.-.     ..       .......-...+...|...|.+++.+.+++.++..     ...+
T Consensus        70 ~~~k~~~~~l~~~~e~~la~i~-----~~-------~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-----~~~~  132 (336)
T d1b89a_          70 RTWKEVCFACVDGKEFRLAQMC-----GL-------HIVVHADELEELINYYQDRGYFEELITMLEAALGL-----ERAH  132 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHT-----TT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----TTCC
T ss_pred             HHHHHHHHHHHhCcHHHHHHHH-----HH-------HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-----Cccc
Confidence            3444555555555554432111     00       00111222334556677778888877777766532     1122


Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHH---------HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010446          326 GRVGMAMCSLAHAKCANGNAEEAVELYKK---------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  396 (510)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  396 (510)
                      +   ..+..++.+|.+.+ .++-.++++.         ++..+.+.           ..+..+..+|.+.|++++|+..+
T Consensus       133 ~---~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~-----------~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         133 M---GMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA-----------HLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             H---HHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTT-----------TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             h---HHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHc-----------CChHHHHHHHHhcCCHHHHHHHH
Confidence            2   23455666665543 3333333332         12222210           11234566677777777776654

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.17  E-value=2.2  Score=33.83  Aligned_cols=57  Identities=19%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 010446          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIR  487 (510)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  487 (510)
                      .++|...|++|.++....+.+.||.......+.+..|+. .|+.++|.+.-++++.-.
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            467899999999999888899999999888888888775 599999998888887654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.95  E-value=0.37  Score=30.30  Aligned_cols=48  Identities=13%  Similarity=-0.039  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 010446          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPGKLLTV  503 (510)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  503 (510)
                      .+-.+..-|+-+...|+|++|++++++|.....+.+.-.....++.++
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~klt~s~~~l~SL   54 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSL   54 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            344566778889999999999999999999988887755545555444

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=88.78  E-value=4.5  Score=31.92  Aligned_cols=183  Identities=9%  Similarity=0.021  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      ++.++...-+.++|++.+.+..++++.       ..+......-.+.+..+|- ..|....+.+.+.........  ...
T Consensus         7 lv~~AklaeqaeRy~dm~~~mk~v~~~-------~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~--~~~   77 (236)
T d1o9da_           7 NVYMAKLAEQAERYEEMVEFMEKVSNS-------LGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEES--RGN   77 (236)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHT-------CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHc--cCC
Confidence            566777777889999999999888764       1111112222334444442 244555566665544332221  111


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC--CCCh-hHHHHHHHHHHHHhhc-----CC-----HHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--KTSI-LLVTSLLGMAKVLGSI-----GR-----AKKAVE  266 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~-~~~~~~~~la~~~~~~-----g~-----~~~A~~  266 (510)
                      +....    +..-| +..=-++=...+...+++....+-  ..++ ..+-.+...|..|...     |+     .++|..
T Consensus        78 ~~~~~----~i~~y-k~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~  152 (236)
T d1o9da_          78 EEHVN----SIREY-RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLT  152 (236)
T ss_dssp             HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             hHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHH
Confidence            22111    11111 111112223344555554433211  1122 2233333445554332     22     457889


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 010446          267 IYHRVITILELNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIY  317 (510)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~  317 (510)
                      .|++|.++......+.+|.......+.+..|+ ..|+.++|....++++.-.
T Consensus       153 aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         153 AYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999988777778877777777776665 4699999999888887644

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.50  E-value=7.7  Score=34.21  Aligned_cols=199  Identities=9%  Similarity=-0.028  Sum_probs=114.7

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 010446          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (510)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (510)
                      +..-....+.+.|...+.......    .............++..+...+..+.+..........      .........
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~w  290 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSLIER  290 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHHHHH
T ss_pred             HHHHHhccChhHHHHHHHhhhhcc----cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc------ccchHHHHH
Confidence            333334457777777666543321    1112222233334444445556677777766655431      122222222


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------HH
Q 010446          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI-------TE  404 (510)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~  404 (510)
                        .++ .....+++..+...+...          ...........+-+|..+...|+.++|..+|..+..-       ..
T Consensus       291 --~~~-~al~~~~~~~~~~~~~~l----------~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa  357 (450)
T d1qsaa1         291 --RVR-MALGTGDRRGLNTWLARL----------PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAA  357 (450)
T ss_dssp             --HHH-HHHHHTCHHHHHHHHHHS----------CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred             --HHH-HHHHcCChHHHHHHHHhc----------CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHH
Confidence              223 344567888887776542          2333344556688999999999999999999886541       11


Q ss_pred             HhhCCC-------------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhcC
Q 010446          405 KYKGKE-------------HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  471 (510)
Q Consensus       405 ~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  471 (510)
                      ...|..             .......-...+..+...|+...|...+..++.       ..++   .-...++.+..+.|
T Consensus       358 ~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~-------~~~~---~~~~~la~lA~~~g  427 (450)
T d1qsaa1         358 QRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK-------SKSK---TEQAQLARYAFNNQ  427 (450)
T ss_dssp             HHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCCH---HHHHHHHHHHHHTT
T ss_pred             HHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh-------CCCH---HHHHHHHHHHHHCC
Confidence            111110             000111223456778889999999998876654       1222   23467788899999


Q ss_pred             ChHHHHHHHHHH
Q 010446          472 RDKEAEKLVLEA  483 (510)
Q Consensus       472 ~~~~A~~~~~~a  483 (510)
                      .+..|+....++
T Consensus       428 ~~~~aI~a~~~~  439 (450)
T d1qsaa1         428 WWDLSVQATIAG  439 (450)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             ChhHHHHHHHHH
Confidence            999999776554

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=87.09  E-value=5.5  Score=30.96  Aligned_cols=185  Identities=11%  Similarity=-0.001  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHhhhhcCCCc
Q 010446          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDE  199 (510)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (510)
                      ..-.|...-+.|+|++..+..++++++.....     ..-...-.+.+..+|- ..|....+.+.+.....   . ....
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n-----~eLt~eERnLLsvayKn~i~~~R~s~R~i~~ie~---k-~~~~   77 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFEN-----SEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQT---K-QLNN   77 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-SCSC
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccC-----ccCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---h-hccc
Confidence            34467888899999999999999988743211     1111222233344442 23445555555543221   1 1112


Q ss_pred             hHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHH
Q 010446          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-----SIGRAKKAVEIYHRVITI  274 (510)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~  274 (510)
                      .....    +..-|. ..--.+-...+...+.+....+.++....+-.+...|..|.     ..|.-++|...|++|.++
T Consensus        78 ~~~~~----~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i  152 (220)
T d2o8pa1          78 DELVK----ICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL  152 (220)
T ss_dssp             HHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             hhHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            22111    111111 11223344556666666666554432222223333444443     568889999999999999


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHH
Q 010446          275 LELNRGTESADLVLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTK  319 (510)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~  319 (510)
                      .....++.+|.......|.+..+ .-.++.++|....++|.+.+..
T Consensus       153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fde  198 (220)
T d2o8pa1         153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILEL  198 (220)
T ss_dssp             HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            88766667776666666666554 5689999999999888554443

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.17  E-value=2.4  Score=26.64  Aligned_cols=37  Identities=16%  Similarity=0.222  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN  153 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~  153 (510)
                      ....+...|...=..|+|++|+.+|.++++.+.....
T Consensus        10 ~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~   46 (77)
T d1wr0a1          10 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVK   46 (77)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            3445777888889999999999999999998877653

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.94  E-value=4  Score=26.65  Aligned_cols=55  Identities=11%  Similarity=0.161  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010446          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY  172 (510)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (510)
                      ....++..|..+-..|+|++|+.+|.++++.+...... ..++.....+.....-|
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~-e~~~~~k~~l~~k~~eY   68 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKG-TKESSKRCVLRTKISGY   68 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHH
Confidence            44457888999999999999999999999998877532 33444444444444333

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.66  E-value=4.3  Score=25.34  Aligned_cols=37  Identities=11%  Similarity=0.025  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010446          371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (510)
Q Consensus       371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (510)
                      ..+..+..-|+-+...|+|++|++++++|.....+..
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~   42 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM   42 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            3455667788999999999999999999988776554