Citrus Sinensis ID: 010470

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Protein Sequence
MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEcccccccccEEEEEEccccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEccccEEEcccEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEccccccEEEEcccccEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccHHEccccccEEEEEEcccccEEEEccccccEEEEEEEEcccccEEEEcccccEEEEEEcccccccEEEcccccccccEEEEEEcccccEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEc
Coil and Loop (DISEMBL)
MSQEEIAREAIKHALKALRKRHLveegahapaiialsrpiisqgsewkEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRrseegaeffaestvpstckhkinaheggcASILFEYNsarlisggqdksiklwdtntgslsstLYGCLGSVLDlaithdnrsviaasssnnlyvwdvnsgrvrhtltghtdkvcAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAlafsmdgqtifsghidgnlrlwdiQTGKLLSEVAAHSLAAVTSISlsrsgniiltsgrdnlhnlfdirsLEVCGSlratgnrvasnwsrscispdesyvaagsadgsvYIWSISKADIVRTLKehtapvlscswsglgkplasadkngvvcvwt
Flexible Loop (DISEMBL)
MSQEEIAREAIKHALKALRKRHLVEEGahapaiialsrpiisQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAeffaestvpstckHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIaasssnnlyvWDVNSGRVRHTltghtdkvcavdvskissrhVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVtsislsrsgNIILTSGRDNLHNLFDIRSLEVCGSLRATgnrvasnwsrsciSPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLscswsglgkplasadkngvvcvwt
Low Complexity Region (SEG)
MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT
Disordered region (IsUnstruct)
*************ALKALRKRHLVEEGAHAPAIIALSRPIIS***************************************************************************IKALELVV**************************LVDRWMLQ**********ANALYEDMIDRLK***********************EFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW*
Disordered Region (DISOPRED)
******************RK**LV*EGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRS************TSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMI*R****************VVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT
Disordered Region (DISEMBL)
MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT
Disordered Region (DISPRO)
*****IAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxHLVEEGAHAPAIIALSRPIISQGSEWKEKxxxxxxxxxxxxxxxxxxxxxLVVEVAESRSSKALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWMLQKMQDxxxxxxxxxxxxxxxxxxxxxGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	510	2.2.26 [Sep-21-2011]
O15736	612	Protein tipD OS=Dictyoste	yes	no	0.872	0.727	0.325	4e-60
Q8C0J2	607	Autophagy-related protein	yes	no	0.564	0.474	0.338	3e-46
Q676U5	607	Autophagy-related protein	yes	no	0.570	0.479	0.342	6e-46
Q5I0B9	622	Autophagy-related protein	yes	no	0.580	0.475	0.325	1e-45
Q5RAC9	607	Autophagy-related protein	yes	no	0.570	0.479	0.338	8e-45
Q6KAU8	623	Autophagy-related protein	no	no	0.931	0.762	0.273	1e-38
Q8NAA4	619	Autophagy-related protein	no	no	0.572	0.471	0.32	2e-38
Q00808	1356	Vegetative incompatibilit	no	no	0.564	0.212	0.322	8e-36
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.562	0.188	0.300	1e-32
Q09406	534	Autophagic-related protei	yes	no	0.856	0.818	0.255	1e-32

>sp|O15736|TIPD_DICDI Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1

 Score =  233 bits (593), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 247/483 (51%), Gaps = 38/483 (7%)

Query: 59  QQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEK- 117
           Q+ +K Q  L+       A++ SS  LL +K      LQ EL     E  ++++ +++  
Sbjct: 135 QKLFKLQEDLTNSYKRN-ADNASSILLLNDKNK---DLQNELMSKEIEIERIRSTIQQDL 190

Query: 118 --IKALELVVSE----NQQIRAQLEEMTM-------KAKNAEAENKMLVDRWMLQKMQDA 164
             IK LE+VV E    +Q IR +L  +         K    E EN  LV+RW+ +K ++A
Sbjct: 191 DSIKRLEMVVIEKENVSQIIRDELSSLQTEFLHNESKVVKLEQENSSLVERWLRKKNEEA 250

Query: 165 ERLNEANALYEDMI---DRLKASGLEKLAKQQVDGVVRRSE----------EGAEFFAES 211
            ++NEAN  Y+ M+   D   A    +L++   + VV+  +          E   F +E+
Sbjct: 251 SKMNEANDFYQKMVEQRDSTPAKAAVQLSESISNLVVKLPDANDVPIPIVLERGVFSSEA 310

Query: 212 TVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVL 271
            +PS  K +   H      + F      L +GG DK +K+WD  +G   STL G   S++
Sbjct: 311 MLPSKAKKRWTGHNSEIYCMAFNSIGNLLATGGGDKCVKVWDVISGQQKSTLLGASQSIV 370

Query: 272 DLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD 331
            ++ + ++ S++  S+ N+  +W+   GR RHTLTGH  KV       I+S  VV+ ++D
Sbjct: 371 SVSFSPNDESILGTSNDNSARLWNTELGRSRHTLTGHIGKVYTGKF--INSNRVVTGSHD 428

Query: 332 RTLKVWDLHKGYCVNTIIFHSNCNALA-FSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 390
           RT+K+WDL KGYC  TI   S+CN L      G  + SGH+D ++R WD   G+    ++
Sbjct: 429 RTIKLWDLQKGYCTRTIFCFSSCNDLVILGGSGTHLASGHVDHSVRFWDSNAGEPTQVLS 488

Query: 391 AHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS 449
           +     +TSI+ S +  N ILT+ RD+   + DIR+ +   + +    R   NW+++  S
Sbjct: 489 SIHEGQITSITNSPTNTNQILTNSRDHTLKIIDIRTFDTIRTFKDPEYRNGLNWTKASWS 548

Query: 450 PDESYVAAGSADGSVYIWSISKADIVRTL-KEHT--APVLSCSWSGLGKPLASADKNGVV 506
           PD  Y+A+GS DGS+ IW  +    V+ L K H   + V  CSWS L     SADK+  +
Sbjct: 549 PDGRYIASGSIDGSICIWDATNGKTVKVLTKVHNNGSSVCCCSWSPLANIFISADKDKNI 608

Query: 507 CVW 509
             W
Sbjct: 609 IQW 611

Not known; disruption of the gene for tipD results in morphological defects.
Dictyostelium discoideum (taxid: 44689)

>sp|Q8C0J2|A16L1_MOUSE Autophagy-related protein 16-1 OS=Mus musculus GN=Atg16l1 PE=1 SV=1

 Score =  186 bits (473), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 170/304 (55%), Gaps = 16/304 (5%)

Query: 213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN------TGSLSSTLYGC 266
           VP+T  +  +AH+G   ++ F   S  L +GG D+ +KLW+         GSLS +  G 
Sbjct: 310 VPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGI 369

Query: 267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV 326
                D A  +    ++AAS+     +W V+  R+RHTLTGH+ KV +      ++R +V
Sbjct: 370 TSIEFDSAGAY----LLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNAR-IV 424

Query: 327 SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 386
           S ++DRTLK+WDL    C+ T+   S+CN +  +   Q + SGH D  +R WDI++  ++
Sbjct: 425 SGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIRSESVV 482

Query: 387 SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS 446
            E+    L  +T++ L+     +L+  RD+L  + D+R+  V  +  A G +  S+W+R 
Sbjct: 483 REMEL--LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRV 540

Query: 447 CISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGV 505
             SPD SYVAAGSA+GS+Y+WS+    + + L K+H++ + + +W+  G  + S DK   
Sbjct: 541 VFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSR 600

Query: 506 VCVW 509
             +W
Sbjct: 601 AVLW 604

Plays an essential role in autophagy.

Mus musculus (taxid: 10090)

>sp|Q676U5|A16L1_HUMAN Autophagy-related protein 16-1 OS=Homo sapiens GN=ATG16L1 PE=1 SV=2

 Score =  185 bits (470), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 171/307 (55%), Gaps = 16/307 (5%)

Query: 210 ESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN------TGSLSSTL 263
           E  VP+T     +AH+G   ++ F   S  L +GG D+ +KLW+         GSLS + 
Sbjct: 307 EVRVPATALCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSN 366

Query: 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323
            G      D A ++    ++AAS+     +W V+  R+RHTLTGH+ KV +      ++R
Sbjct: 367 AGITSIEFDSAGSY----LLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNAR 422

Query: 324 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG 383
            +VS ++DRTLK+WDL    C+ T+   S+CN +  +   Q + SGH D  +R WDI++ 
Sbjct: 423 -IVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIRSE 479

Query: 384 KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW 443
            ++ E+    L  +T++ L+     +L+  RD+L  + D+R+  +  +  A G +  S+W
Sbjct: 480 SIVREMEL--LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDW 537

Query: 444 SRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADK 502
           +R   SPD SYVAAGSA+GS+YIWS+    + + L K+H++ + + +WS  G  + S DK
Sbjct: 538 TRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSPSGSHVVSVDK 597

Query: 503 NGVVCVW 509
                +W
Sbjct: 598 GCKAVLW 604

Plays an essential role in autophagy.

Homo sapiens (taxid: 9606)

>sp|Q5I0B9|ATG16_XENTR Autophagy-related protein 16 OS=Xenopus tropicalis GN=atg16 PE=2 SV=2

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 166/304 (54%), Gaps = 8/304 (2%)

Query: 210 ESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCL 267
           E  VP+T  +  +AH+G   ++ F   S  L +GG D+ +KLWD   N      +L G  
Sbjct: 322 EVRVPATAVYSFDAHDGEVNAVRFSPGSRLLATGGMDRRVKLWDVIGNKCEAKGSLTGSN 381

Query: 268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS 327
             +  +        ++AAS+     +W V+  R+RHTLTGH+ KV +      ++R +VS
Sbjct: 382 AGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNAR-IVS 440

Query: 328 AAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS 387
            ++DRTLK+WDL    C+ T+   S+CN +  +   Q + SGH D  +R WDI+T  ++ 
Sbjct: 441 GSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIRTECIVR 498

Query: 388 EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 447
           E+       +T++ L+     +L+  RD+L  + D+R+  V  +  A G +  S+W+R  
Sbjct: 499 ELELQ--GRITALDLNPERTQLLSCSRDDLIKITDLRANAVQQTFSAPGFKCGSDWTRVI 556

Query: 448 ISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGVV 506
            SPD SYV+AGSA+G++Y W++    + R   K+H++ + + +WS  G  + S DK    
Sbjct: 557 FSPDGSYVSAGSAEGTLYFWNVLTGKVERMFSKQHSSSINAVAWSPSGTHVVSVDKGSRG 616

Query: 507 CVWT 510
            +W+
Sbjct: 617 VLWS 620

Plays an essential role in autophagy.

Xenopus tropicalis (taxid: 8364)

>sp|Q5RAC9|A16L1_PONAB Autophagy-related protein 16-1 OS=Pongo abelii GN=ATG16L1 PE=2 SV=1

 Score =  181 bits (460), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 169/307 (55%), Gaps = 16/307 (5%)

Query: 210 ESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN------TGSLSSTL 263
           E  VP+T     +AH+G   ++ F   S  L +GG D+ +KLW+         GSLS + 
Sbjct: 307 EVRVPTTALCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSN 366

Query: 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323
            G      D A ++    ++AAS+     +W V+  R+RHTLTGH+ KV +      ++R
Sbjct: 367 AGITSIEFDSAGSY----LLAASNDFASRIWTVDDSRLRHTLTGHSGKVLSAKFLLDNAR 422

Query: 324 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG 383
            +VS ++DRTLK WDL    C+ T+   S+CN +  +   Q + SGH D  +R WDI++ 
Sbjct: 423 -IVSGSHDRTLKHWDLRSKVCIKTVFAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIRSE 479

Query: 384 KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW 443
            ++ E+    L  +T++ L+     +L+  RD+L  + D+R+  +  +  A G +  S+W
Sbjct: 480 SIVREMEL--LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDW 537

Query: 444 SRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADK 502
           +R   SPD SYVAAGSA+GS+Y WS+    + + L K+H++ + + +WS  G  + S DK
Sbjct: 538 TRVVFSPDGSYVAAGSAEGSLYTWSVLTGKVEKVLSKQHSSSINAVAWSPSGLHVVSVDK 597

Query: 503 NGVVCVW 509
                +W
Sbjct: 598 GCKAVLW 604

Plays an essential role in autophagy.

Pongo abelii (taxid: 9601)

>sp|Q6KAU8|A16L2_MOUSE Autophagy-related protein 16-2 OS=Mus musculus GN=Atg16l2 PE=2 SV=2

 Score =  161 bits (408), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 143/522 (27%), Positives = 237/522 (45%), Gaps = 47/522 (9%)

Query: 27  GAHAPAIIALSRPIISQGSEWKEKADNLE------TELQQCYKAQSR-LSEQLVVEVAES 79
           G  A  ++  S  + +  S+ +E+ D LE       +LQ+    QSR L E+     A+ 
Sbjct: 109 GEMAYQVVKKSAALDTLQSQLEERQDRLEALQACVVQLQEARAQQSRQLEERQAENAAQR 168

Query: 80  RSSKALLQE---KESLITSLQEELTQIRDECSQLKTEL--------------------EE 116
            + + LLQ+   +E+ +  LQEE   + ++  Q K                       +E
Sbjct: 169 EAYETLLQQAVHQEAALRRLQEEARDLLEQLVQRKARAAAERNLRNERRERANQALVSQE 228

Query: 117 KIKALELVVSENQQIRAQLEEMTMKAKNAEAENKM--LVDRWMLQKMQDAERLNEANAL- 173
             KA +  VS ++ I   LE+ T +   A A   +    +    +K +   R   A +L 
Sbjct: 229 LKKAAKRTVSISE-IPNTLEDGTKEETVALAPAALPEFSESETCEKWKRPFRSASATSLT 287

Query: 174 YEDMIDRLKASGLEKLAKQQ---VDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCAS 230
               +D +K  GL    K++   V G   +  +       + +PS  +  ++AH     +
Sbjct: 288 LSRCVDVVK--GLLDFKKRRGHSVGGAPEQRYQSIPVCVSAQIPSQAQDVLDAHLSEVNA 345

Query: 231 ILFEYNSARLISGGQDKSIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS 288
           + F  NS+ L +GG D+ I LW+   G L +  TL G  GS+  +        V+AA+ +
Sbjct: 346 VCFGPNSSLLATGGADRLIHLWNVVGGRLEANQTLEGAGGSITSVDFDPSGSQVLAATYN 405

Query: 289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 348
               +W V   + + TL+GH DKV A    K++    V+ + DRT+K WDL + YC  TI
Sbjct: 406 QAAQLWKVGETQSKETLSGHKDKVTAAKF-KLTRHQAVTGSRDRTVKEWDLGRAYCSRTI 464

Query: 349 IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI 408
              S CN +        I SGH D  +R WD +    +  +       VTS+ LS     
Sbjct: 465 NVLSYCNDVVCG--DHIIISGHNDQKIRFWDSRGPHCIQVIPVQ--GRVTSLHLSYDQLH 520

Query: 409 ILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468
           +L+  RDN   + D+R   +    RA G + +S+W+++  SPD SY  AGS++G +YIW 
Sbjct: 521 LLSCSRDNTLKVIDLRISNIRQVFRADGFKCSSDWTKAVFSPDRSYALAGSSNGDLYIWD 580

Query: 469 ISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++   +  +L+  H   V + +W   G  + S D+   V +W
Sbjct: 581 VNTGKLETSLQGPHCTAVNAVAWCFSGNHVVSVDQGRKVVLW 622

May play a role in autophagy.

Mus musculus (taxid: 10090)

>sp|Q8NAA4|A16L2_HUMAN Autophagy-related protein 16-2 OS=Homo sapiens GN=ATG16L2 PE=2 SV=2

 Score =  160 bits (406), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 148/300 (49%), Gaps = 8/300 (2%)

Query: 213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS--TLYGCLGSV 270
           +P+  +  ++AH     ++ F  NS+ L +GG D+ I LW+     L +  TL G  GS+
Sbjct: 324 LPTRAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSI 383

Query: 271 LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY 330
             +        V+AA+ +    +W V   + + TL+GH DKV A    K++    V+ + 
Sbjct: 384 TSVDFDPSGYQVLAATYNQAAQLWKVGEAQSKETLSGHKDKVTAAKF-KLTRHQAVTGSR 442

Query: 331 DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 390
           DRT+K WDL + YC  TI   S CN +        I SGH D  +R WD +       + 
Sbjct: 443 DRTVKEWDLGRAYCSRTINVLSYCNDVVCG--DHIIISGHNDQKIRFWDSRGPHCTQVIP 500

Query: 391 AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450
                 VTS+SLS     +L+  RDN   + D+R   +    RA G +  S+W+++  SP
Sbjct: 501 VQ--GRVTSLSLSHDQLHLLSCSRDNTLKVIDLRVSNIRQVFRADGFKCGSDWTKAVFSP 558

Query: 451 DESYVAAGSADGSVYIWSISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           D SY  AGS DG++YIW +    +   L+  H A V + +W   G  + S D+   V +W
Sbjct: 559 DRSYALAGSCDGALYIWDVDTGKLESRLQGPHCAAVNAVAWCYSGSHMVSVDQGRKVVLW 618

May play a role in autophagy.

Homo sapiens (taxid: 9606)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  152 bits (383), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 145/295 (49%), Gaps = 7/295 (2%)

Query: 216  TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAI 275
            TC   +  H     S+ F  +  R+ SG  DK+IK+WDT +G+ + TL G  GSV  +A 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAF 1017

Query: 276  THDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK 335
            + D + V + S    + +WD  SG    TL GH   V +V  S    R V S + D T+K
Sbjct: 1018 SPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQR-VASGSDDHTIK 1076

Query: 336  VWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL 394
            +WD   G C  T+  H +   ++AFS DGQ + SG IDG +++WD  +G     +  H  
Sbjct: 1077 IWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHG- 1135

Query: 395  AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454
              V S++ S  G  + +   D    ++D  S     +L   G  V S       SPD   
Sbjct: 1136 GWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQS----VAFSPDGQR 1191

Query: 455  VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
            VA+GS+D ++ IW  +     +TL+ H   V S ++S  G+ +AS   +  + +W
Sbjct: 1192 VASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDNTIKIW 1246

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 156/296 (52%), Gaps = 9/296 (3%)

Query: 217  CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 276
            C + +  H     S++F  + A L SGG D+ ++LWD ++G+   TL G    V  L  +
Sbjct: 1066 CLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFS 1125

Query: 277  HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336
             +  ++   SS   + +WD++S +  +TL GHT+ V AV  S      + S + D+T+++
Sbjct: 1126 PNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSP-DGATLASGSGDQTVRL 1184

Query: 337  WDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA 395
            WD+    C+  +  H++  N++ F+ DG T+ SG  D  +RLW+I + K L     H+ +
Sbjct: 1185 WDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHT-S 1243

Query: 396  AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS-CISPDESY 454
             V S+  +  G+++ +   D    L+DI S +   + +       +NW  S   +PD S 
Sbjct: 1244 WVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQG-----HTNWVNSVAFNPDGSM 1298

Query: 455  VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
            +A+GS D +V +W IS +  + T + HT+ V S ++S  G  LAS   +  V +W+
Sbjct: 1299 LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWS 1354

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q09406|A16L2_CAEEL Autophagic-related protein 16.2 OS=Caenorhabditis elegans GN=atg-16.2 PE=3 SV=2

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 226/486 (46%), Gaps = 49/486 (10%)

Query: 54  LETELQQCYKAQSRLSEQLV---VEVAESRSSKALLQEKESLITSLQEELTQIRDECSQL 110
           ++ E+   Y+ +S+  + L+    ++A+S S  +L+  +      L+ E   I  + + L
Sbjct: 67  MKEEMANVYRMKSKNDQDLIDANRKLADSESRYSLVSSQRD---KLRIETDAIVKKMTVL 123

Query: 111 KTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEA 170
           + EL E  +   ++ +E   + A    +T K    + E   L++R    + + AE +N  
Sbjct: 124 ENELAELKEENSVINTERVSLVATCNYLTEKKTQLDNERFQLLNRIRELQEKSAEFMNAE 183

Query: 171 NALYEDMIDRLKASGLEKLAKQQVD---GVVRRS-------EEGAEFFAESTVPSTCKHK 220
            AL E+   R +    E++AK   D   G  R S       E   EF     +PS  K K
Sbjct: 184 IALQEE---RAQMRIREQIAKATADLNLGDERASSAFGTSPETLDEFMMTDVLPSEVKFK 240

Query: 221 INAHEGGCASILFEYNSARLISGGQDKSIKLW----DTNTGSLSSTLYGCLGSVLDLAIT 276
           ++ H+G    + +  +     + G D  +++W    +    S  STL GCLG V  L   
Sbjct: 241 LSTHDGEVHDVEWMSDDT-FATAGSDSKVQIWRVSPNKTDASKVSTLSGCLGPVNRLDYD 299

Query: 277 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336
                 +A+S+     +W+++S R+  T +GHTDKV +  +    S +V+S + DRT+K 
Sbjct: 300 SQRHVCLASSNDKTCRLWNIDSQRLLSTFSGHTDKVSSARL--FQSHNVISGSADRTIKN 357

Query: 337 WDLH-----KGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV 389
           WD+      K Y V + +F   + C      +   +  S H D  +R WD ++       
Sbjct: 358 WDISSIRCLKSYLVGSTVFDIVAKCG-----VSQSSFISSHFDKKVRFWDARSSD----- 407

Query: 390 AAHSL---AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS 446
           A +S+     V+S+ +S  G  +L S RD+  +L D+R+  +     A   + + + +R+
Sbjct: 408 ATYSVELGQKVSSLDISMDGLQVLASSRDDTLSLIDVRNYGIIHLYSAEQYKTSCDSTRA 467

Query: 447 CISPDESYVAAGSADGSVYIWSISKA---DIVRTLKEHTAPVLSCSWSGLGKPLASADKN 503
             S    YV AGS++ SV+IW+        +V+T +  +A ++S +W+  G+ L + D+ 
Sbjct: 468 IFSSTGEYVLAGSSNSSVFIWNTKTTKLEKVVKTARSDSAQIMSLAWNPSGRGLLACDRQ 527

Query: 504 GVVCVW 509
               +W
Sbjct: 528 KTCTLW 533

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
224133752	550	predicted protein [Populus trichocarpa]	0.998	0.925	0.849	0.0
356513836	514	PREDICTED: protein tipD-like [Glycine ma	0.996	0.988	0.819	0.0
356563153	514	PREDICTED: protein tipD-like [Glycine ma	0.996	0.988	0.817	0.0
255540429	520	Protein tipD, putative [Ricinus communis	0.994	0.975	0.817	0.0
449440596	511	PREDICTED: protein tipD-like [Cucumis sa	0.996	0.994	0.815	0.0
225456824	509	PREDICTED: protein tipD-like [Vitis vini	0.998	1.0	0.796	0.0
297795789	509	nucleotide binding protein [Arabidopsis	0.998	1.0	0.747	0.0
79533267	509	transducin/WD40 domain-containing protei	0.998	1.0	0.739	0.0
9759025	515	unnamed protein product [Arabidopsis tha	0.994	0.984	0.740	0.0
297733656	547	unnamed protein product [Vitis vinifera]	0.915	0.853	0.692	0.0

>gi|224133752|ref|XP_002321652.1| predicted protein [Populus trichocarpa] gi|222868648|gb|EEF05779.1| predicted protein [Populus trichocarpa]

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/510 (84%), Positives = 476/510 (93%), Gaps = 1/510 (0%)

Query: 1   MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQ 60
           MSQEEI  EAIK ALKAL+KRHL+EEGAHAPA IALSRPIISQGSEWKEKA+NLE ELQQ
Sbjct: 42  MSQEEIGLEAIKQALKALKKRHLLEEGAHAPAFIALSRPIISQGSEWKEKAENLEVELQQ 101

Query: 61  CYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA 120
           CYKAQS LS QLVVEVAESR++K  LQEKE+ IT LQ E TQIRDEC QL+ + EEKIKA
Sbjct: 102 CYKAQSLLSNQLVVEVAESRAAKTSLQEKEAAITDLQNEATQIRDECGQLREDFEEKIKA 161

Query: 121 LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR 180
           LELV+SENQ +R QLEEMT+KAKNAEAENKML+DRWMLQKMQDAERLNEANALYE+MIDR
Sbjct: 162 LELVMSENQALRTQLEEMTLKAKNAEAENKMLIDRWMLQKMQDAERLNEANALYEEMIDR 221

Query: 181 LKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL 240
           LKASGLE LA+QQVDGVVRR+E+GAE+F EST+PSTCKHKI AHEGGCASILFEYNS +L
Sbjct: 222 LKASGLESLARQQVDGVVRRNEDGAEYFVESTIPSTCKHKITAHEGGCASILFEYNSGKL 281

Query: 241 ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300
           ISGGQD+SIK+WDTNTGSLS TLYGCLGSVLDL+ITHDNRS+IAASSSNNLYVWDV +GR
Sbjct: 282 ISGGQDRSIKMWDTNTGSLSHTLYGCLGSVLDLSITHDNRSIIAASSSNNLYVWDVTTGR 341

Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFS 360
           VRHTLTGHTDKVCAVDVSKIS+RHVVSAAYDRT+KVWDL KG+C NTIIFHSNCN+L FS
Sbjct: 342 VRHTLTGHTDKVCAVDVSKISTRHVVSAAYDRTIKVWDLQKGFCTNTIIFHSNCNSLCFS 401

Query: 361 MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420
           MDGQTI SGH+DGNLRLWDIQTGKLLSEVAAHSL AVTSIS+SR+G+++LTSGRDNLHNL
Sbjct: 402 MDGQTICSGHVDGNLRLWDIQTGKLLSEVAAHSL-AVTSISVSRNGSVVLTSGRDNLHNL 460

Query: 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 480
           FD+RSLEVCG+LRATGNRVASNWSRSCISPD++YVAAGSADGSV+IWSIS+ DIV TLKE
Sbjct: 461 FDMRSLEVCGTLRATGNRVASNWSRSCISPDDNYVAAGSADGSVHIWSISQGDIVSTLKE 520

Query: 481 HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
           HTAPVL CSWSGLGKPLAS+DKNG++  WT
Sbjct: 521 HTAPVLCCSWSGLGKPLASSDKNGIIYTWT 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513836|ref|XP_003525614.1| PREDICTED: protein tipD-like [Glycine max]

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/509 (81%), Positives = 480/509 (94%), Gaps = 1/509 (0%)

Query: 2   SQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQC 61
           SQEEIA EAIKH L+ALRKRHL+EE AHAPA++ALSRPI+SQGSEWKEK +NL+ ELQQC
Sbjct: 7   SQEEIASEAIKHTLRALRKRHLLEEAAHAPAVLALSRPIVSQGSEWKEKEENLQVELQQC 66

Query: 62  YKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKAL 121
           YKAQSRLSEQLVVEVAESR+SKALLQEKE+ +  LQ+ELT++RDECSQLK +LEEKIK+L
Sbjct: 67  YKAQSRLSEQLVVEVAESRASKALLQEKENALADLQKELTELRDECSQLKVDLEEKIKSL 126

Query: 122 ELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRL 181
           E++VSEN +++AQLE+MT+KA  AEAENKML+DRWML+KM+DAERLNEANALYE+M+++L
Sbjct: 127 EVIVSENSELKAQLEQMTIKANKAEAENKMLIDRWMLEKMKDAERLNEANALYEEMVEKL 186

Query: 182 KASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLI 241
           +ASGLE+LA++QVDG+VR+SEEGAEFF ES +PS CK+++ AHEGGCAS+LFEYNS++LI
Sbjct: 187 RASGLEQLARRQVDGIVRQSEEGAEFFLESNIPSICKYRLRAHEGGCASMLFEYNSSKLI 246

Query: 242 SGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301
           +GGQD+ +K+WD NTGSLSSTL GCLGSVLDL ITHDNRSVIAASSSNNLYVWDVNSGRV
Sbjct: 247 TGGQDRLVKMWDANTGSLSSTLQGCLGSVLDLTITHDNRSVIAASSSNNLYVWDVNSGRV 306

Query: 302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM 361
           RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT+KVWDL KGYC NTIIFHSNCNAL+FSM
Sbjct: 307 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTIKVWDLVKGYCTNTIIFHSNCNALSFSM 366

Query: 362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421
           DGQTIFSGH+DGNLRLWDIQ+GKLLSEVAAHSL AVTS+SLSR+GN++LTSGRDNLHNLF
Sbjct: 367 DGQTIFSGHVDGNLRLWDIQSGKLLSEVAAHSL-AVTSLSLSRNGNVVLTSGRDNLHNLF 425

Query: 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH 481
           D+RSLEVCG+L+A GNRVASNWSRSCISPD+++VAAGSADGSVYIWSISK DIV TLKEH
Sbjct: 426 DVRSLEVCGTLKAMGNRVASNWSRSCISPDDNHVAAGSADGSVYIWSISKGDIVSTLKEH 485

Query: 482 TAPVLSCSWSGLGKPLASADKNGVVCVWT 510
           T+ VL C WSG+GKPLASADKNG+VCVWT
Sbjct: 486 TSSVLCCRWSGIGKPLASADKNGIVCVWT 514

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563153|ref|XP_003549829.1| PREDICTED: protein tipD-like [Glycine max]

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/509 (81%), Positives = 477/509 (93%), Gaps = 1/509 (0%)

Query: 2   SQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQC 61
           SQEEIA EAIKHALKALRKRHL+EE AHAP ++ALSRPI+SQGSEWKEKA+NL+ ELQQC
Sbjct: 7   SQEEIASEAIKHALKALRKRHLLEEAAHAPTVLALSRPIVSQGSEWKEKAENLQMELQQC 66

Query: 62  YKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKAL 121
           YKAQSRLSEQLVVEVAESR+SK  LQEKE+ +  LQ+ELT++RDECSQLK +LEEKIK+L
Sbjct: 67  YKAQSRLSEQLVVEVAESRASKTSLQEKENALADLQKELTELRDECSQLKVDLEEKIKSL 126

Query: 122 ELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRL 181
           ELVVSEN +++AQLE+MT KA  AEAENKML+DRWML+KM+DAERLNEAN LYE+M+++L
Sbjct: 127 ELVVSENSELKAQLEQMTTKANKAEAENKMLIDRWMLEKMKDAERLNEANTLYEEMVEKL 186

Query: 182 KASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLI 241
           +ASGLE+LA+QQVDG+VRRSEEGAEFF +S +PSTCK+++ AHEGGCAS+LFEYNS++LI
Sbjct: 187 RASGLEQLARQQVDGIVRRSEEGAEFFFDSNIPSTCKYRLRAHEGGCASMLFEYNSSKLI 246

Query: 242 SGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301
           +GGQD+ +K+WD NTGSLSSTL+GCLGSVLDL ITHDN+SVIAASSSNNLYVWDVNSGRV
Sbjct: 247 TGGQDRLVKMWDANTGSLSSTLHGCLGSVLDLTITHDNQSVIAASSSNNLYVWDVNSGRV 306

Query: 302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM 361
           RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT+KVWDL KGYC NT+IF SNCN+L+FSM
Sbjct: 307 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTIKVWDLVKGYCTNTVIFRSNCNSLSFSM 366

Query: 362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF 421
           DGQTIFSGH+DGNLRLWDIQTGKLLSEVAAHSL AVTS+SLSR+GN++LTSGRDNLHNLF
Sbjct: 367 DGQTIFSGHVDGNLRLWDIQTGKLLSEVAAHSL-AVTSLSLSRNGNVVLTSGRDNLHNLF 425

Query: 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH 481
           D+RSLEVCG+L+A GNRVASNWSRSCISPD+++VAAGSADGSVYIWSISK DIV TLKEH
Sbjct: 426 DVRSLEVCGTLKAMGNRVASNWSRSCISPDDNHVAAGSADGSVYIWSISKGDIVSTLKEH 485

Query: 482 TAPVLSCSWSGLGKPLASADKNGVVCVWT 510
           T+ VL C WSG+ KPLASADKNG+VCVWT
Sbjct: 486 TSSVLCCRWSGIAKPLASADKNGIVCVWT 514

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540429|ref|XP_002511279.1| Protein tipD, putative [Ricinus communis] gi|223550394|gb|EEF51881.1| Protein tipD, putative [Ricinus communis]

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/515 (81%), Positives = 474/515 (92%), Gaps = 8/515 (1%)

Query: 3   QEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCY 62
           +EE+AR+AIKHALKALRKRHL+EEGAHAPAIIALSRPIISQGSEWKEKA+ LE ELQQCY
Sbjct: 7   REEVARKAIKHALKALRKRHLLEEGAHAPAIIALSRPIISQGSEWKEKAEALELELQQCY 66

Query: 63  KAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALE 122
           KAQSRLSEQLVVEVAE+R+SKA LQEKE++I  L++ELTQIR+ECSQLK +LEEK KALE
Sbjct: 67  KAQSRLSEQLVVEVAETRASKASLQEKETVIADLEKELTQIREECSQLKEDLEEKFKALE 126

Query: 123 LVVSENQQIRAQ-------LEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYE 175
           LV+SEN  +R Q       L+EMT KA +AEAENKMLVDRWMLQKMQDAERLNEANALYE
Sbjct: 127 LVMSENDSLRVQYDALQMRLDEMTAKANSAEAENKMLVDRWMLQKMQDAERLNEANALYE 186

Query: 176 DMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY 235
           +M+DRL+ASGLEKLA+QQVDGVVR+SEEGAEFF EST+PS CKHKI AH+GGCASIL+EY
Sbjct: 187 EMVDRLRASGLEKLAQQQVDGVVRQSEEGAEFFMESTIPSACKHKITAHDGGCASILYEY 246

Query: 236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD 295
           NS +LISGGQD++IK+WDT TGSLS TLYGCLGSVLDL+ITHDNRS+IAASSSNNLYVWD
Sbjct: 247 NSGKLISGGQDRAIKMWDTTTGSLSRTLYGCLGSVLDLSITHDNRSIIAASSSNNLYVWD 306

Query: 296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN 355
           V+SGR RHTLTGH DKVCAVDVSKISSR+VVSAAYDRT+KVWDL KGYC NTI+F SNCN
Sbjct: 307 VSSGRARHTLTGHVDKVCAVDVSKISSRYVVSAAYDRTIKVWDLQKGYCTNTIVFPSNCN 366

Query: 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           A+ FSMDGQTI SGH+DGNLRLWDIQTGK + EVAAHSL AVTSISLSR+GN++LTSGRD
Sbjct: 367 AICFSMDGQTICSGHVDGNLRLWDIQTGKRVGEVAAHSL-AVTSISLSRNGNVVLTSGRD 425

Query: 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV 475
           N+HNLFD+RSLEVCG+ RATGNRVASNWSRSCISPD++YVAAGSADGSV+IWS++KADIV
Sbjct: 426 NVHNLFDMRSLEVCGTFRATGNRVASNWSRSCISPDDNYVAAGSADGSVHIWSVAKADIV 485

Query: 476 RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
            TLKEHT+ VL CSWSGLGKPLA+ADKNG++  WT
Sbjct: 486 STLKEHTSSVLCCSWSGLGKPLATADKNGIIYTWT 520

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440596|ref|XP_004138070.1| PREDICTED: protein tipD-like [Cucumis sativus] gi|449501354|ref|XP_004161346.1| PREDICTED: protein tipD-like [Cucumis sativus]

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/509 (81%), Positives = 467/509 (91%), Gaps = 1/509 (0%)

Query: 1   MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQ 60
           MS  EIA EAIKHAL+ALR+RHL+EEGAHAPA +ALSRPII+Q SEWKEKA+ LE ELQQ
Sbjct: 3   MSPNEIANEAIKHALRALRQRHLLEEGAHAPAFLALSRPIITQSSEWKEKAEKLELELQQ 62

Query: 61  CYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA 120
           CYKAQSRLSEQLVVEVAE R+SK+L+ EKE++I +L++EL++ RDECSQLK +LE K+KA
Sbjct: 63  CYKAQSRLSEQLVVEVAEVRTSKSLIGEKEAVIDNLEQELSRARDECSQLKADLEIKLKA 122

Query: 121 LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR 180
           LEL + ENQ+I+ QLE MT+KAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR
Sbjct: 123 LELALCENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR 182

Query: 181 LKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL 240
           LKASGLEKLA+QQVDGVVR+SEEGAEFF ESTVPS CKH+I  HEGGC +ILFE NS +L
Sbjct: 183 LKASGLEKLAQQQVDGVVRQSEEGAEFFVESTVPSVCKHRIRGHEGGCGTILFENNSGKL 242

Query: 241 ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300
           ISGGQD+++KLWDTNTGSLSSTL+GCLGSVLDLAITHDNRSVIAASSSNNLY WD++SGR
Sbjct: 243 ISGGQDRTVKLWDTNTGSLSSTLHGCLGSVLDLAITHDNRSVIAASSSNNLYAWDISSGR 302

Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFS 360
           VRHTLTGH+DKVCAVDVSK+SSR+VVSAAYDRT+K+WDL KGYC  T IF SNCNA+ FS
Sbjct: 303 VRHTLTGHSDKVCAVDVSKVSSRYVVSAAYDRTIKIWDLQKGYCTKTFIFASNCNAVRFS 362

Query: 361 MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420
           MDGQTI SGH+DGNLRLWDIQTGKL+SEVA HSL AVTS+SLSR+GN ILTSGRDNLHNL
Sbjct: 363 MDGQTICSGHVDGNLRLWDIQTGKLISEVAGHSL-AVTSLSLSRNGNTILTSGRDNLHNL 421

Query: 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 480
           FDIRSLEVCG+LRA+GNRVASNWSRSCISPD++YVAAGSADGSV++WSISK DIV TLKE
Sbjct: 422 FDIRSLEVCGTLRASGNRVASNWSRSCISPDDNYVAAGSADGSVHVWSISKHDIVSTLKE 481

Query: 481 HTAPVLSCSWSGLGKPLASADKNGVVCVW 509
            TA VL CSWSGLGKPLASAD+NG++  W
Sbjct: 482 STASVLCCSWSGLGKPLASADRNGIIFTW 510

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456824|ref|XP_002278503.1| PREDICTED: protein tipD-like [Vitis vinifera]

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/510 (79%), Positives = 470/510 (92%), Gaps = 1/510 (0%)

Query: 1   MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQ 60
           MSQ+E+A +AIKHALKALRKRHL+EEGAHAPAI+ALS+P I QGSEWK+KA+NLE ELQQ
Sbjct: 1   MSQDEVAVDAIKHALKALRKRHLLEEGAHAPAIVALSKPFIYQGSEWKDKAENLEVELQQ 60

Query: 61  CYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA 120
           CY+AQ+RLSEQLVVEVAE R+SKAL+QEKE++I  +Q ELT+ RDEC QLK  +EEK KA
Sbjct: 61  CYRAQARLSEQLVVEVAECRASKALVQEKEAIINDIQNELTKTRDECLQLKVIVEEKTKA 120

Query: 121 LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR 180
           LELV+SENQ+++AQL+EMT+KAKN EAENKML+DRWMLQKMQ+AE LNEANALY+D  D+
Sbjct: 121 LELVMSENQELKAQLQEMTVKAKNIEAENKMLIDRWMLQKMQEAEHLNEANALYQDFKDQ 180

Query: 181 LKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL 240
           LKASG+ +LA+QQVDGVVR+SEEGA+++ ESTVP+TCKH+I+AHEGGCA+ILFEYNS  L
Sbjct: 181 LKASGIAQLARQQVDGVVRQSEEGAQYYGESTVPNTCKHRIHAHEGGCAAILFEYNSGNL 240

Query: 241 ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300
           ISGG D+++K+WDTNTGSL+ TLYGC+GSVLDLAITHDNRS+IAASSSNNL VWDVNSGR
Sbjct: 241 ISGGHDRAVKMWDTNTGSLTRTLYGCVGSVLDLAITHDNRSIIAASSSNNLCVWDVNSGR 300

Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFS 360
           +RHTLTGH DKVC+VDVSKISSRHV SAAYDRT+KVWDL KGYC+NTIIFHSNCNAL FS
Sbjct: 301 IRHTLTGHMDKVCSVDVSKISSRHVASAAYDRTIKVWDLQKGYCINTIIFHSNCNALCFS 360

Query: 361 MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420
            DGQTI SGH+DGNLRLWDIQTGKLLSEVAAHSL A+TSISLSR+G+++LTSGRDNLHNL
Sbjct: 361 TDGQTICSGHVDGNLRLWDIQTGKLLSEVAAHSL-AITSISLSRNGSVVLTSGRDNLHNL 419

Query: 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 480
           FD+RSLEVCG+LRA GNRVASNWSRSCIS D++YVAAGS DGSV+IWSI  A+IV TLKE
Sbjct: 420 FDMRSLEVCGTLRANGNRVASNWSRSCISADDNYVAAGSTDGSVHIWSILTAEIVSTLKE 479

Query: 481 HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
           HTA VLSCSWSGLGKPLAS+DK+G+V  WT
Sbjct: 480 HTASVLSCSWSGLGKPLASSDKSGIVYTWT 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795789|ref|XP_002865779.1| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gi|297311614|gb|EFH42038.1| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/510 (74%), Positives = 460/510 (90%), Gaps = 1/510 (0%)

Query: 1   MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQ 60
           M QEE A EAIK AL+ALRKRHL+EEGAHAPAI ALSRPIISQGSEWKEK + LETELQQ
Sbjct: 1   MLQEEKAMEAIKDALRALRKRHLLEEGAHAPAISALSRPIISQGSEWKEKTEKLETELQQ 60

Query: 61  CYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA 120
           CYKAQSRLSEQLV+EVAESR+SKA+LQEKE  I  LQ+ELTQ R+EC+Q++ ELEEK K 
Sbjct: 61  CYKAQSRLSEQLVIEVAESRTSKAILQEKELFINDLQKELTQRREECTQIQEELEEKTKT 120

Query: 121 LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR 180
           ++++++ENQ+IR+QLEEMT + + AE+ENKML+DRWMLQKMQDAERLNEAN LYE+M+ +
Sbjct: 121 VDVLIAENQEIRSQLEEMTNRVQKAESENKMLIDRWMLQKMQDAERLNEANDLYEEMLAK 180

Query: 181 LKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL 240
           LKA+GLE LA+QQVDG+VRR+E+G + F EST+PSTC H+I+AHEGGC SI+FEYNS  L
Sbjct: 181 LKANGLETLARQQVDGIVRRNEDGTDHFVESTIPSTCGHRIHAHEGGCGSIIFEYNSGTL 240

Query: 241 ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300
            +GGQD+++K+WDTN+G+L  +LYG LG++LD+A+THDN+SVIAA+SSNNL+VWDV+SGR
Sbjct: 241 FTGGQDRAVKMWDTNSGALIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGR 300

Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFS 360
           VRHTLTGHTDKVCAVDVSK SSRHVVSAAYDRT+K+WDLHKGYC NT++F SNCNA+  S
Sbjct: 301 VRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAICLS 360

Query: 361 MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420
           +DG T+FSGH+DGNLRLWDIQTGKLLSEVA HS +AVTS+SLSR+GN ILTSGRDN+HN+
Sbjct: 361 IDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHS-SAVTSVSLSRNGNRILTSGRDNVHNV 419

Query: 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 480
           FD R+LE+CG+LRA+GNR+ASNWSRSCISPD+ YVAAGSADG+V++WS+SK +IV  LKE
Sbjct: 420 FDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGTVHVWSLSKGNIVSILKE 479

Query: 481 HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
            T+P+L CSWSG+GKPLASADKNG VC WT
Sbjct: 480 QTSPILCCSWSGIGKPLASADKNGYVCTWT 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79533267|ref|NP_199834.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|40823395|gb|AAR92280.1| At5g50230 [Arabidopsis thaliana] gi|56381931|gb|AAV85684.1| At5g50230 [Arabidopsis thaliana] gi|332008531|gb|AED95914.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/510 (73%), Positives = 458/510 (89%), Gaps = 1/510 (0%)

Query: 1   MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQ 60
           M QEE A EAI  AL+ALRKRHL+EEGAHAPAI ALS+P+ISQGSEWKEK + LETELQQ
Sbjct: 1   MVQEEKAMEAINDALRALRKRHLLEEGAHAPAISALSKPLISQGSEWKEKTEKLETELQQ 60

Query: 61  CYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA 120
           CYKAQSRLSEQLV+EVAESR+SKA+LQEKE LI  LQ+ELTQ R++C++L+ ELEEK K 
Sbjct: 61  CYKAQSRLSEQLVIEVAESRTSKAILQEKELLINDLQKELTQRREDCTRLQEELEEKTKT 120

Query: 121 LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR 180
           ++++++EN +IR+QLEEMT + + AE ENKML+DRWMLQKMQDAERLNEAN LYE+M+ +
Sbjct: 121 VDVLIAENLEIRSQLEEMTSRVQKAETENKMLIDRWMLQKMQDAERLNEANDLYEEMLAK 180

Query: 181 LKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL 240
           LKA+GLE LA+QQVDG+VRR+E+G + F EST+PSTC ++I+AHEGGC SI+FEYNS  L
Sbjct: 181 LKANGLETLARQQVDGIVRRNEDGTDHFVESTIPSTCANRIHAHEGGCGSIVFEYNSGTL 240

Query: 241 ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300
            +GGQD+++K+WDTN+G+L  +LYG LG++LD+A+THDN+SVIAA+SSNNL+VWDV+SGR
Sbjct: 241 FTGGQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGR 300

Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFS 360
           VRHTLTGHTDKVCAVDVSK SSRHVVSAAYDRT+K+WDLHKGYC NT++F SNCNA+  S
Sbjct: 301 VRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAICLS 360

Query: 361 MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420
           +DG T+FSGH+DGNLRLWDIQTGKLLSEVA HS +AVTS+SLSR+GN ILTSGRDN+HN+
Sbjct: 361 IDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHS-SAVTSVSLSRNGNRILTSGRDNVHNV 419

Query: 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 480
           FD R+LE+CG+LRA+GNR+ASNWSRSCISPD+ YVAAGSADGSV++WS+SK +IV  LKE
Sbjct: 420 FDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKE 479

Query: 481 HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
            T+P+L CSWSG+GKPLASADKNG VC WT
Sbjct: 480 QTSPILCCSWSGIGKPLASADKNGYVCTWT 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759025|dbj|BAB09394.1| unnamed protein product [Arabidopsis thaliana]

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/508 (74%), Positives = 457/508 (89%), Gaps = 1/508 (0%)

Query: 3   QEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCY 62
           QEE A EAI  AL+ALRKRHL+EEGAHAPAI ALS+P+ISQGSEWKEK + LETELQQCY
Sbjct: 9   QEEKAMEAINDALRALRKRHLLEEGAHAPAISALSKPLISQGSEWKEKTEKLETELQQCY 68

Query: 63  KAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALE 122
           KAQSRLSEQLV+EVAESR+SKA+LQEKE LI  LQ+ELTQ R++C++L+ ELEEK K ++
Sbjct: 69  KAQSRLSEQLVIEVAESRTSKAILQEKELLINDLQKELTQRREDCTRLQEELEEKTKTVD 128

Query: 123 LVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLK 182
           ++++EN +IR+QLEEMT + + AE ENKML+DRWMLQKMQDAERLNEAN LYE+M+ +LK
Sbjct: 129 VLIAENLEIRSQLEEMTSRVQKAETENKMLIDRWMLQKMQDAERLNEANDLYEEMLAKLK 188

Query: 183 ASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLIS 242
           A+GLE LA+QQVDG+VRR+E+G + F EST+PSTC ++I+AHEGGC SI+FEYNS  L +
Sbjct: 189 ANGLETLARQQVDGIVRRNEDGTDHFVESTIPSTCANRIHAHEGGCGSIVFEYNSGTLFT 248

Query: 243 GGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR 302
           GGQD+++K+WDTN+G+L  +LYG LG++LD+A+THDN+SVIAA+SSNNL+VWDV+SGRVR
Sbjct: 249 GGQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGRVR 308

Query: 303 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMD 362
           HTLTGHTDKVCAVDVSK SSRHVVSAAYDRT+K+WDLHKGYC NT++F SNCNA+  S+D
Sbjct: 309 HTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAICLSID 368

Query: 363 GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD 422
           G T+FSGH+DGNLRLWDIQTGKLLSEVA HS +AVTS+SLSR+GN ILTSGRDN+HN+FD
Sbjct: 369 GLTVFSGHMDGNLRLWDIQTGKLLSEVAGHS-SAVTSVSLSRNGNRILTSGRDNVHNVFD 427

Query: 423 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT 482
            R+LE+CG+LRA+GNR+ASNWSRSCISPD+ YVAAGSADGSV++WS+SK +IV  LKE T
Sbjct: 428 TRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKEQT 487

Query: 483 APVLSCSWSGLGKPLASADKNGVVCVWT 510
           +P+L CSWSG+GKPLASADKNG VC WT
Sbjct: 488 SPILCCSWSGIGKPLASADKNGYVCTWT 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733656|emb|CBI14903.3| unnamed protein product [Vitis vinifera]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/511 (69%), Positives = 419/511 (81%), Gaps = 44/511 (8%)

Query: 1   MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQ 60
           MSQ+E+A +AIKHALKALRKRHL+EEGAHAPAI+ALS+P I QGSEWK+KA+NLE ELQQ
Sbjct: 80  MSQDEVAVDAIKHALKALRKRHLLEEGAHAPAIVALSKPFIYQGSEWKDKAENLEVELQQ 139

Query: 61  CYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA 120
           CY+AQ+RLSEQLVVEVAE R+SKAL+QEKE++I  +Q ELT+ RDEC QLK  +EEK KA
Sbjct: 140 CYRAQARLSEQLVVEVAECRASKALVQEKEAIINDIQNELTKTRDECLQLKVIVEEKTKA 199

Query: 121 LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR 180
           LELV+SENQ+++AQL+EMT+KAKN EAENKML+DRWMLQKMQ+AE LNEANALY+D  D+
Sbjct: 200 LELVMSENQELKAQLQEMTVKAKNIEAENKMLIDRWMLQKMQEAEHLNEANALYQDFKDQ 259

Query: 181 LKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL 240
           LKASG+ +LA+QQVDGVVR+SEEGA+++ ESTVP+TCKH+I+AHEGGCA+ILFEYNS  L
Sbjct: 260 LKASGIAQLARQQVDGVVRQSEEGAQYYGESTVPNTCKHRIHAHEGGCAAILFEYNSGNL 319

Query: 241 ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300
           ISGG D+++K+WDTNTGSL+ TLYGC+GSVLDLAITHDNRS+IAASSSNNL VWDVNSGR
Sbjct: 320 ISGGHDRAVKMWDTNTGSLTRTLYGCVGSVLDLAITHDNRSIIAASSSNNLCVWDVNSGR 379

Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAF 359
           +RHTLTGH DKVC+VDVSKISSRHV SAAYDRT+KVWDL KG  ++ +  HS    +++ 
Sbjct: 380 IRHTLTGHMDKVCSVDVSKISSRHVASAAYDRTIKVWDLQKGKLLSEVAAHSLAITSISL 439

Query: 360 SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN 419
           S +G  +                                           LTSGRDNLHN
Sbjct: 440 SRNGSVV-------------------------------------------LTSGRDNLHN 456

Query: 420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK 479
           LFD+RSLEVCG+LRA GNRVASNWSRSCIS D++YVAAGS DGSV+IWSI  A+IV TLK
Sbjct: 457 LFDMRSLEVCGTLRANGNRVASNWSRSCISADDNYVAAGSTDGSVHIWSILTAEIVSTLK 516

Query: 480 EHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
           EHTA VLSCSWSGLGKPLAS+DK+G+V  WT
Sbjct: 517 EHTASVLSCSWSGLGKPLASSDKSGIVYTWT 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
TAIR|locus:2157762	509	AT5G50230 "AT5G50230" [Arabido	0.998	1.0	0.739	1.4e-213
DICTYBASE|DDB_G0275323	612	tipD "autophagy protein 16" [D	0.905	0.754	0.304	7.1e-61
UNIPROTKB|Q676U5	607	ATG16L1 "Autophagy-related pro	0.578	0.485	0.330	4.8e-58
ZFIN|ZDB-GENE-050417-401	605	atg16l1 "ATG16 autophagy relat	0.601	0.507	0.347	4.8e-56
UNIPROTKB|E1BYR9	608	ATG16L1 "Uncharacterized prote	0.884	0.741	0.281	1.2e-47
MGI|MGI:1924290	607	Atg16l1 "autophagy related 16-	0.886	0.744	0.277	3.3e-47
UNIPROTKB|E1BGS8	623	ATG16L1 "Uncharacterized prote	0.862	0.706	0.280	4.2e-47
UNIPROTKB|E2R5F8	607	ATG16L1 "Uncharacterized prote	0.888	0.746	0.283	1.1e-46
RGD|1310631	605	Atg16l1 "autophagy related 16-	0.960	0.809	0.259	2.4e-44
UNIPROTKB|F1SM42	596	ATG16L1 "Uncharacterized prote	0.866	0.741	0.282	9.3e-43

TAIR|locus:2157762 AT5G50230 "AT5G50230" [Arabidopsis thaliana (taxid:3702)]

 Score = 2064 (731.6 bits), Expect = 1.4e-213, P = 1.4e-213
 Identities = 377/510 (73%), Positives = 458/510 (89%)

Query:     1 MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQ 60
             M QEE A EAI  AL+ALRKRHL+EEGAHAPAI ALS+P+ISQGSEWKEK + LETELQQ
Sbjct:     1 MVQEEKAMEAINDALRALRKRHLLEEGAHAPAISALSKPLISQGSEWKEKTEKLETELQQ 60

Query:    61 CYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA 120
             CYKAQSRLSEQLV+EVAESR+SKA+LQEKE LI  LQ+ELTQ R++C++L+ ELEEK K 
Sbjct:    61 CYKAQSRLSEQLVIEVAESRTSKAILQEKELLINDLQKELTQRREDCTRLQEELEEKTKT 120

Query:   121 LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR 180
             ++++++EN +IR+QLEEMT + + AE ENKML+DRWMLQKMQDAERLNEAN LYE+M+ +
Sbjct:   121 VDVLIAENLEIRSQLEEMTSRVQKAETENKMLIDRWMLQKMQDAERLNEANDLYEEMLAK 180

Query:   181 LKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL 240
             LKA+GLE LA+QQVDG+VRR+E+G + F EST+PSTC ++I+AHEGGC SI+FEYNS  L
Sbjct:   181 LKANGLETLARQQVDGIVRRNEDGTDHFVESTIPSTCANRIHAHEGGCGSIVFEYNSGTL 240

Query:   241 ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR 300
              +GGQD+++K+WDTN+G+L  +LYG LG++LD+A+THDN+SVIAA+SSNNL+VWDV+SGR
Sbjct:   241 FTGGQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGR 300

Query:   301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFS 360
             VRHTLTGHTDKVCAVDVSK SSRHVVSAAYDRT+K+WDLHKGYC NT++F SNCNA+  S
Sbjct:   301 VRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAICLS 360

Query:   361 MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420
             +DG T+FSGH+DGNLRLWDIQTGKLLSEVA HS +AVTS+SLSR+GN ILTSGRDN+HN+
Sbjct:   361 IDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHS-SAVTSVSLSRNGNRILTSGRDNVHNV 419

Query:   421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 480
             FD R+LE+CG+LRA+GNR+ASNWSRSCISPD+ YVAAGSADGSV++WS+SK +IV  LKE
Sbjct:   420 FDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKE 479

Query:   481 HTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
              T+P+L CSWSG+GKPLASADKNG VC WT
Sbjct:   480 QTSPILCCSWSGIGKPLASADKNGYVCTWT 509

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=ISS

DICTYBASE|DDB_G0275323 tipD "autophagy protein 16" [Dictyostelium discoideum (taxid:44689)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 147/482 (30%), Positives = 245/482 (50%)

Query:    46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRD 105
             E ++K   L+ +L   YK  +  +  +++   +++  +  L  KE  I  ++  + Q  D
Sbjct:   132 EMEQKLFKLQEDLTNSYKRNADNASSILLLNDKNKDLQNELMSKEIEIERIRSTIQQDLD 191

Query:   106 ECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAE 165
                +L+  + EK    +++  E   ++ +      K    E EN  LV+RW+ +K ++A 
Sbjct:   192 SIKRLEMVVIEKENVSQIIRDELSSLQTEFLHNESKVVKLEQENSSLVERWLRKKNEEAS 251

Query:   166 RLNEANALYEDMI---DRLKASGLEKLAKQQVDGVVRRSE----------EGAEFFAEST 212
             ++NEAN  Y+ M+   D   A    +L++   + VV+  +          E   F +E+ 
Sbjct:   252 KMNEANDFYQKMVEQRDSTPAKAAVQLSESISNLVVKLPDANDVPIPIVLERGVFSSEAM 311

Query:   213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD 272
             +PS  K +   H      + F      L +GG DK +K+WD  +G   STL G   S++ 
Sbjct:   312 LPSKAKKRWTGHNSEIYCMAFNSIGNLLATGGGDKCVKVWDVISGQQKSTLLGASQSIVS 371

Query:   273 LAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR 332
             ++ + ++ S++  S+ N+  +W+   GR RHTLTGH  KV       I+S  VV+ ++DR
Sbjct:   372 VSFSPNDESILGTSNDNSARLWNTELGRSRHTLTGHIGKVYTGKF--INSNRVVTGSHDR 429

Query:   333 TLKVWDLHKGYCVNTIIFHSNCNALAF-SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA 391
             T+K+WDL KGYC  TI   S+CN L      G  + SGH+D ++R WD   G+    +++
Sbjct:   430 TIKLWDLQKGYCTRTIFCFSSCNDLVILGGSGTHLASGHVDHSVRFWDSNAGEPTQVLSS 489

Query:   392 HSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450
                  +TSI+ S +  N ILT+ RD+   + DIR+ +   + +    R   NW+++  SP
Sbjct:   490 IHEGQITSITNSPTNTNQILTNSRDHTLKIIDIRTFDTIRTFKDPEYRNGLNWTKASWSP 549

Query:   451 DESYVAAGSADGSVYIWSISKADIVRTL-KEHT--APVLSCSWSGLGKPLASADKNGVVC 507
             D  Y+A+GS DGS+ IW  +    V+ L K H   + V  CSWS L     SADK+  + 
Sbjct:   550 DGRYIASGSIDGSICIWDATNGKTVKVLTKVHNNGSSVCCCSWSPLANIFISADKDKNII 609

Query:   508 VW 509
              W
Sbjct:   610 QW 611

GO:0030587 "sorocarp development" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0034274 "Atg12-Atg5-Atg16 complex" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0016236 "macroautophagy" evidence=ISS

UNIPROTKB|Q676U5 ATG16L1 "Autophagy-related protein 16-1" [Homo sapiens (taxid:9606)]

 Score = 475 (172.3 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
 Identities = 100/303 (33%), Positives = 166/303 (54%)

Query:   210 ESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCL 267
             E  VP+T     +AH+G   ++ F   S  L +GG D+ +KLW+          +L G  
Sbjct:   307 EVRVPATALCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSN 366

Query:   268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS 327
               +  +        ++AAS+     +W V+  R+RHTLTGH+ KV +      ++R +VS
Sbjct:   367 AGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNAR-IVS 425

Query:   328 AAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS 387
              ++DRTLK+WDL    C+ T+   S+CN +  +   Q + SGH D  +R WDI++  ++ 
Sbjct:   426 GSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIRSESIVR 483

Query:   388 EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 447
             E+    L  +T++ L+     +L+  RD+L  + D+R+  +  +  A G +  S+W+R  
Sbjct:   484 EMEL--LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDWTRVV 541

Query:   448 ISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGVV 506
              SPD SYVAAGSA+GS+YIWS+    + + L K+H++ + + +WS  G  + S DK    
Sbjct:   542 FSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSPSGSHVVSVDKGCKA 601

Query:   507 CVW 509
              +W
Sbjct:   602 VLW 604

GO:0015031 "protein transport" evidence=IEA

GO:0000421 "autophagic vacuole membrane" evidence=IEA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=ISS

GO:0051260 "protein homooligomerization" evidence=NAS

GO:0000045 "autophagic vacuole assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-050417-401 atg16l1 "ATG16 autophagy related 16-like 1 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 478 (173.3 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
 Identities = 110/317 (34%), Positives = 170/317 (53%)

Query:   201 SEEGAEF---FAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG 257
             S E AE     A+  VPST  H  +AH+G   ++ F   S  L +GG D+ +KLW+  +G
Sbjct:   290 SPENAEVPSACADVRVPSTALHIFDAHDGEVNAVRFSPGSRLLATGGMDRRVKLWEVVSG 349

Query:   258 SLS--STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV 315
                    L G    +  +        ++AAS+     +W V+  R+RHTLTGH+ KV + 
Sbjct:   350 RCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSA 409

Query:   316 DVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIFHSNCNALAFSMDGQTIFSGHIDGN 374
                  ++R +VS +YDRTLK+WDL    C + T+   S+CN +  +   Q + SGH D  
Sbjct:   410 RFLLDNAR-IVSGSYDRTLKLWDLRSKVCSMKTVFAGSSCNDIVCTE--QCVMSGHFDKK 466

Query:   375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA 434
             +R WDI       +   + L  VTS+ L+     +LT  RD+L  + D+R+  V  +  A
Sbjct:   467 VRFWDISYQNYHIQKQLNKLCRVTSLDLNHDRTELLTCSRDDLVKIIDLRTNAVRQTFNA 526

Query:   435 TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGL 493
              G +  S+++R   SPD S+VAAGSADG +Y+W++    + +TL K H++ + S SWS  
Sbjct:   527 QGFKCGSDFTRVTFSPDGSFVAAGSADGVLYLWNVLTGKLEKTLDKGHSSAINSVSWSLS 586

Query:   494 GKPLASADKNGVVCVWT 510
             G  +AS +K     +W+
Sbjct:   587 GAFVASVEKGSKAVLWS 603

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BYR9 ATG16L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 138/490 (28%), Positives = 249/490 (50%)

Query:    45 SEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIR 104
             +E+ +K   LETE   C + +S+L +   +E A +++ K      +    +L+E+L +  
Sbjct:   132 AEYLQKISELETE---CQELRSKLQD---LERA-NQTLKDEYDALQITFNALEEKLRKTT 184

Query:   105 DECSQLKTE-LEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLV----DRWMLQ 159
             ++  +L +  + EK +    + +EN++  ++  +  ++ + AEA  + L     D   + 
Sbjct:   185 EDNQELVSRWMAEKAQEANRLNAENEK-DSRRRQARLQKELAEAAKEPLPVEPDDDIEVL 243

Query:   160 KMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVV----RRS-------EEGAE-- 206
               + ++   E + +    + R  +  L + A   +D +     RRS       ++ AE  
Sbjct:   244 ADETSDTAEETSPVRA--VSRTPSKRLSQPAGGLLDSITNIFGRRSLSSFPPPQDNAEPH 301

Query:   207 --FFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSST 262
                  E  VP+T     +AH+G   ++ F   S  L +GG D+ +KLW+   +      +
Sbjct:   302 PGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVLGDRCEPKGS 361

Query:   263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISS 322
             L G    +  +        ++AAS+     +W V+  R+RHTLTGH+ KV +      ++
Sbjct:   362 LSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHTLTGHSGKVLSAKFLLDNA 421

Query:   323 RHVVSAAYDRTLKVWDLHKGYC-VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ 381
             R +VS ++DRTLK+WDL    C + T+   S+CN +  +   Q + SGH D  +R WDI+
Sbjct:   422 R-IVSGSHDRTLKLWDLRSKVCNIKTVFAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIR 478

Query:   382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS 441
             T  ++ E+    L  +T++ L+     +LT  RD+L  + D+R   V  +  A G +  S
Sbjct:   479 TESIVKELEL--LGRITALDLNSERTELLTCSRDDLLKIIDLRVGAVKQTFSAQGFKCGS 536

Query:   442 NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASA 500
             +W+R   SPD +YVAAGSADG++Y+W++    + RTL K H++P+ + +WS  G  + S 
Sbjct:   537 DWTRVVFSPDGNYVAAGSADGALYVWNVLTGKLERTLAKHHSSPINAVAWSPAGAHVVSV 596

Query:   501 DKNGVVCVWT 510
             DK     +W+
Sbjct:   597 DKGNKAVLWS 606

GO:0000421 "autophagic vacuole membrane" evidence=IEA

MGI|MGI:1924290 Atg16l1 "autophagy related 16-like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 135/486 (27%), Positives = 250/486 (51%)

Query:    45 SEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIR 104
             SE+ +   +LET    C   +++L +   +EVA +++ K      +   T+L+E+L +  
Sbjct:   132 SEYLQTISDLETN---CLDLRTKLQD---LEVA-NQTLKDEYDALQITFTALEEKLRKTT 184

Query:   105 DECSQLKTE-LEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKML-VDR-----WM 157
             +E  +L T  + EK +    + +EN++  ++  +  ++ + AEA  + L V++      +
Sbjct:   185 EENQELVTRWMAEKAQEANRLNAENEK-DSRRRQARLQKELAEAAKEPLPVEQDDDIEVI 243

Query:   158 LQKMQD-AERLNEANALYEDMIDRLK--ASGL-EKLA----KQQVDGV-VRRS--EEGAE 206
             + +  D  E  +   A+      RL   A GL + +     ++ V  + V +   +    
Sbjct:   244 VDETSDHTEETSPVRAVSRAATKRLSQPAGGLLDSITNIFGRRSVSSIPVPQDIMDTHPA 303

Query:   207 FFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLY 264
                +  VP+T  +  +AH+G   ++ F   S  L +GG D+ +KLW+   +      +L 
Sbjct:   304 SGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLS 363

Query:   265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH 324
             G    +  +        ++AAS+     +W V+  R+RHTLTGH+ KV +      ++R 
Sbjct:   364 GSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNAR- 422

Query:   325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384
             +VS ++DRTLK+WDL    C+ T+   S+CN +  +   Q + SGH D  +R WDI++  
Sbjct:   423 IVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIRSES 480

Query:   385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444
             ++ E+    L  +T++ L+     +L+  RD+L  + D+R+  V  +  A G +  S+W+
Sbjct:   481 VVREMEL--LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWT 538

Query:   445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKN 503
             R   SPD SYVAAGSA+GS+Y+WS+    + + L K+H++ + + +W+  G  + S DK 
Sbjct:   539 RVVFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKG 598

Query:   504 GVVCVW 509
                 +W
Sbjct:   599 SRAVLW 604

GO:0000045 "autophagic vacuole assembly" evidence=TAS

GO:0000421 "autophagic vacuole membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BGS8 ATG16L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 130/463 (28%), Positives = 227/463 (49%)

Query:    54 LETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITS--LQEELTQIRDECSQLK 111
             LE +L++  +    L  + + E A+  +      EK+S      LQ+EL +   E   L 
Sbjct:   176 LEEKLRKTSEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKE--PLP 233

Query:   112 TELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRW-MLQKMQDAERLNEA 170
              E ++ I+ L    SE+ +     E   ++A +  A  ++      +L  + +   L+E+
Sbjct:   234 VEQDDDIEVLVDETSEHPE-----ETSPVRAISRAATKRLSQPAGGLLDSITNIFGLSES 288

Query:   171 NALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCAS 230
               L     D  +   +      Q D V      G E      VP+T     +AH+G   +
Sbjct:   289 PLLGHHSSDAARRRSVSSFPVPQ-DNVDPHPGAGKEV----RVPTTAMSVFDAHDGEVNA 343

Query:   231 ILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS 288
             + F   S  L +GG D+ +KLW+   +      +L G    +  +        ++AAS+ 
Sbjct:   344 VQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDSAGSYLLAASND 403

Query:   289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI 348
                 +W V+  R+RHTLTGH+ KV +      ++R +VS ++DRTLK+WDL    C+ T+
Sbjct:   404 FASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNAR-IVSGSHDRTLKLWDLRSKVCIKTV 462

Query:   349 IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI 408
                S+CN +  +   Q + SGH D  +R WDI++  ++ E+    L  +T++ L+     
Sbjct:   463 FAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIRSESIVREMEL--LGKITALDLNPERTE 518

Query:   409 ILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS 468
             +L+  RD+L  + D+R   V  +  A G +  S+W+R+  SPD SYVAAG+A+GS+YIW+
Sbjct:   519 LLSCSRDDLLKIIDLRINAVRQTFSAPGFKCGSDWTRAVFSPDGSYVAAGAAEGSLYIWN 578

Query:   469 ISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
             +    + + L K H++ + + +WS  G  + + DK     +W+
Sbjct:   579 VLSGKVEKVLSKHHSSSINAVAWSPAGSHVVTVDKGSKAVLWS 621

GO:0000421 "autophagic vacuole membrane" evidence=IEA

UNIPROTKB|E2R5F8 ATG16L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 138/487 (28%), Positives = 246/487 (50%)

Query:    45 SEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIR 104
             +E  +   +LETE   C + +S+L +   +E A +++ K      +   T+L+E+L +  
Sbjct:   132 AECLQTISDLETE---CQELRSKLQD---LERA-NQTLKDEYDALQITFTALEEKLRKTT 184

Query:   105 DECSQLKTE-LEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKML-VDR-----WM 157
             +E  +L T  + EK +    + +EN++  ++  +  ++ + AEA  + L V++      +
Sbjct:   185 EENQELVTRWMAEKAQEANRLNAENEK-DSRRRQARLQKELAEAAKEPLPVEQDDDIEVI 243

Query:   158 LQKMQD-AERLNEANALYEDMIDRLK--ASGL-EKLA----KQQVDGV-VRRSEEGAE-- 206
             + +  D AE  +   A+      RL   A GL + +     ++ V    V +        
Sbjct:   244 VDETSDHAEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDTHPG 303

Query:   207 FFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLY 264
                E  VP+T     +AH+G   ++ F   S  L +GG D+ +KLW+   +      +L 
Sbjct:   304 SSKEVRVPTTAMCIFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLS 363

Query:   265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH 324
             G    +  +        ++AAS+     +W V+  R+RHTLTGH+ KV +      ++R 
Sbjct:   364 GSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNAR- 422

Query:   325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384
             +VS ++DRTLK+WDL    C+ T+   S+CN +  +   Q + SGH D  +R WDI++  
Sbjct:   423 IVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIRSES 480

Query:   385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444
             ++ E+    L  +T++ L+     +L+  RD+L  + D+R   V  +  A G +  S+W+
Sbjct:   481 IVREMEL--LGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFSAPGFKCGSDWT 538

Query:   445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKN 503
             R   SPD  YVAAGSA+GS+YIWS+    + + L K+H + + + +WS  G  + S DK 
Sbjct:   539 RVVFSPDGGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSPSGSHVVSVDKG 598

Query:   504 GVVCVWT 510
                 +W+
Sbjct:   599 SKAVLWS 605

GO:0000421 "autophagic vacuole membrane" evidence=IEA

RGD|1310631 Atg16l1 "autophagy related 16-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 139/536 (25%), Positives = 265/536 (49%)

Query:     4 EEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEK----ADNLET--E 57
             +E+A+  +KH  + L + H  + G  A  +I L+  +  +  E +      A+ L+T  +
Sbjct:    83 QEMAQLKMKHQ-EELTELHK-KRGELAQLVIDLNNQMQQKDKEIQTNEAKIAECLQTISD 140

Query:    58 LQ-QCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTE-LE 115
             L+  C   +++L +   +EVA +++ K      +   T+L+E+L +  +E  +L T  + 
Sbjct:   141 LEADCLDLRTKLQD---LEVA-NQTLKDEYDALQITFTALEEKLRKTTEENQELVTRWMA 196

Query:   116 EKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYE 175
             EK +    + +EN++  ++  +  ++ + AEA  + L     +++  D E + +  + + 
Sbjct:   197 EKAQEANRLNAENEK-DSRRRQARLQKELAEAAKEPLP----VEQDDDIEVIVDETSDHT 251

Query:   176 DMIDRLKASGLEKLAKQQVDGVVRRS--EEGAEFFAESTVPSTCKHKINAHEGGCASILF 233
             +    ++A       +      V +   +       +  VP+T  +  +AH+G   ++ F
Sbjct:   252 EETSPVRAISRAATRRSVSSIPVPQDVVDTHPASGKDVRVPTTASYVFDAHDGEVNAVQF 311

Query:   234 EYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNL 291
                S  L +GG D+ +KLW+   +      +L G    +  +        ++AAS+    
Sbjct:   312 SPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFAS 371

Query:   292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC------- 344
              +W V+  R+RHTLTGH+ KV +      ++R +VS ++DRTLK+WDL    C       
Sbjct:   372 RIWTVDDYRLRHTLTGHSGKVLSAKFLLDNAR-IVSGSHDRTLKLWDLRSKVCEEMQSLC 430

Query:   345 ----------VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL 394
                       + T+   S+CN +  +   Q + SGH D  +R WDI++  ++ E+    L
Sbjct:   431 VLMTFAFLLGIKTVFAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIRSESVVREMEL--L 486

Query:   395 AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454
               +T++ L+     +L+  RD+L  + D+R+  +  S  A G +  S+W+R   SPD SY
Sbjct:   487 GKITALDLNPERTELLSCSRDDLLKIIDLRTNAIKQSFSAPGFKCGSDWTRVVFSPDGSY 546

Query:   455 VAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
             VAAGSADGS+Y+WS+    + + L K+H++ + + +W+  G  + S DK     +W
Sbjct:   547 VAAGSADGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSRAVLW 602

GO:0000421 "autophagic vacuole membrane" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005776 "autophagic vacuole" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1SM42 ATG16L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 135/478 (28%), Positives = 238/478 (49%)

Query:    45 SEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIR 104
             +E  +   +LETE   C + +++L +   +E A +++ K      +   T+L+E+L +  
Sbjct:   132 AECLQTISDLETE---CLELRTKLQD---LERA-NQTLKDEYDALQITFTALEEKLRKTT 184

Query:   105 DECSQLKTE-LEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKML-VDRWM-LQKM 161
             +E  +L T  + EK +    + +EN++  ++  +  ++ + AEA  + L V++   ++ +
Sbjct:   185 EENQELVTRWMAEKAQEANRLNAENEK-DSRRRQARLQKELAEAAKEPLPVEQDDDIEVL 243

Query:   162 QDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVV----RRS-------EEGAEFFAE 210
              D    +         I R     L + A   +D +     RRS       ++  +    
Sbjct:   244 ADDTSDHPEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSFSSVPAPQDNVDTHPG 303

Query:   211 ST----VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLY 264
             S+    VP T     +AH+G   ++ F   S  L +GG D+ +KLW+   +      +L 
Sbjct:   304 SSKEVRVPVTAVCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLS 363

Query:   265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH 324
             G    +  +        ++AAS+     +W V+  R+RHTLTGH+ KV +      ++R 
Sbjct:   364 GSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNAR- 422

Query:   325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ--T 382
             +VS ++DRTLK+WDL    C+ T+   S+CN +  +   Q + SGH D  +R WDI+  T
Sbjct:   423 IVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE--QCVMSGHFDKKIRFWDIRYNT 480

Query:   383 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 442
               L+S      L   T+   +     +L+  RD+L  + D+R   V  +  A G +  S+
Sbjct:   481 RSLVS--LGQLLGKQTASRFNPERTELLSCSRDDLLKIIDLRINAVRQTFSAPGFKCGSD 538

Query:   443 WSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLAS 499
             W+R   SPD SYVAAGSA+GS+Y+WS+    + + L K H++P+ + +WS  G  +AS
Sbjct:   539 WTRVVFSPDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKHHSSPINAVAWSPSGAHVAS 596

GO:0000421 "autophagic vacuole membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	510
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-64
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-53
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-37
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-33
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-16
pfam08614	194	pfam08614, ATG16, Autophagy protein 16 (ATG16)	2e-14
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
smart00320	40	smart00320, WD40, WD40 repeats	9e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
pfam09727	193	pfam09727, CortBP2, Cortactin-binding protein-2	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	3e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.003
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.003
pfam05622	713	pfam05622, HOOK, HOOK protein	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  209 bits (534), Expect = 6e-64
 Identities = 104/294 (35%), Positives = 162/294 (55%), Gaps = 7/294 (2%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 276
            +  +  H GG   + F  +   L +G  D +IK+WD  TG L  TL G  G V D+A +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 277 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336
            D   + + SS   + +WD+ +G    TLTGHT  V +V  S    R + S++ D+T+KV
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKV 119

Query: 337 WDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA 395
           WD+  G C+ T+  H++  N++AFS DG  + S   DG ++LWD++TGK ++ +  H+  
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT-G 178

Query: 396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455
            V S++ S  G  +L+S  D    L+D+ + +  G+LR   N V S       SPD   +
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV----AFSPDGYLL 234

Query: 456 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           A+GS DG++ +W +   + V+TL  HT  V S +WS  GK LAS   +G + +W
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  180 bits (458), Expect = 7e-53
 Identities = 88/254 (34%), Positives = 130/254 (51%), Gaps = 7/254 (2%)

Query: 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAI 275
                +  H G    +    +   L SG  DK+I+LWD  TG    TL G    V  +A 
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF 101

Query: 276 THDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK 335
           + D R + ++S    + VWDV +G+   TL GHTD V +V  S      V S++ D T+K
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIK 160

Query: 336 VWDLHKGYCVNTIIFHSNC-NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL 394
           +WDL  G CV T+  H+   N++AFS DG+ + S   DG ++LWD+ TGK L  +  H  
Sbjct: 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE- 219

Query: 395 AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454
             V S++ S  G ++ +   D    ++D+R+ E   +L    N V    S    SPD   
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV---TS-LAWSPDGKR 275

Query: 455 VAAGSADGSVYIWS 468
           +A+GSADG++ IW 
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  142 bits (359), Expect = 3e-37
 Identities = 87/285 (30%), Positives = 146/285 (51%), Gaps = 5/285 (1%)

Query: 228 CASILFEYNSARLISGGQDKSIKLWDTNT-GSLSSTLYGCLGSVLDLAITHDNRSVIAAS 286
            A    + NS  L S   D ++KLWD +T G L  TL G   SV  LA + D + + + S
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS 174

Query: 287 SS-NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345
           S    + +WD+ +G+   TL GHTD V ++  S      + S + D T+++WDL  G  +
Sbjct: 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234

Query: 346 NTIIF-HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR 404
            + +  HS+    +FS DG  + SG  DG +RLWD+++   L    +   ++V S++ S 
Sbjct: 235 RSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 405 SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV 464
            G ++ +   D    L+D+ + ++  SL   G+      S S        V+ GS DG++
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE-GPVSSLSFSPDGSLLVSGGSDDGTI 353

Query: 465 YIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
            +W +     ++TL+ H+  VLS S+S  G+ ++S   +G V +W
Sbjct: 354 RLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLW 397

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  131 bits (330), Expect = 3e-33
 Identities = 101/303 (33%), Positives = 158/303 (52%), Gaps = 14/303 (4%)

Query: 214 PSTCKHKINAHEGGCASILF-EYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD 272
           P      +  H     S+ F             D +IKLWD  TG   STL G    V  
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 273 LAITHDNRSVIAASSSNN-LYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAY 330
           LA + D   +IA+ SS+  + +WD+++G++   TL+GH+D V +   S   S  + S + 
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL-LASGSS 261

Query: 331 DRTLKVWDLHKGY-CVNTIIFHSNC-NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 388
           D T+++WDL      + T+  HS+   ++AFS DG+ + SG  DG +RLWD++TGKLLS 
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321

Query: 389 VAAHSL-AAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS 446
           +        V+S+S S  G+++++ G  D    L+D+R+    G    T    ++  S S
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT----GKPLKTLEGHSNVLSVS 377

Query: 447 CISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 506
             SPD   V++GS DG+V +W +S   ++R L  HT+ V S  +S  GK LAS   +  +
Sbjct: 378 -FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436

Query: 507 CVW 509
            +W
Sbjct: 437 RLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  119 bits (297), Expect = 6e-29
 Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 13/267 (4%)

Query: 211 STVPSTCKHKINAHEGGCASILFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLYGCLGS 269
                     +  H    +S+ F  +   LI SG  D +I+LWD +TG L  +       
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243

Query: 270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSA 328
            +  + + D   + + SS   + +WD+ S      TL+GH+  V +V  S      + S 
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL-LASG 302

Query: 329 AYDRTLKVWDL--HKGYCVNTIIFHSNC-NALAFSMDGQTIFSG-HIDGNLRLWDIQTGK 384
           + D T+++WDL   K     T+  H    ++L+FS DG  + SG   DG +RLWD++TGK
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362

Query: 385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444
            L  +  HS   V S+S S  G ++ +   D    L+D+ +  +  +L    +RV S   
Sbjct: 363 PLKTLEGHS--NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTS--- 417

Query: 445 RSCISPDESYVAAGSADGSVYIWSISK 471
               SPD   +A+GS+D ++ +W +  
Sbjct: 418 -LDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  113 bits (282), Expect = 5e-27
 Identities = 70/214 (32%), Positives = 114/214 (53%), Gaps = 5/214 (2%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG-SLSSTLYGCLGSVLDLAI 275
            +  ++ H     S  F  + + L SG  D +I+LWD  +  SL  TL G   SVL +A 
Sbjct: 234 LRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292

Query: 276 THDNRSVIAASSSNNLYVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRT 333
           + D + + + SS   + +WD+ +G++  +LT  GH   V ++  S   S  V   + D T
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352

Query: 334 LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS 393
           +++WDL  G  + T+  HSN  +++FS DG+ + SG  DG +RLWD+ TG LL  +  H+
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 394 LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE 427
              VTS+  S  G  + +   DN   L+D+++  
Sbjct: 413 S-RVTSLDFSPDGKSLASGSSDNTIRLWDLKTSL 445

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.5 bits (197), Expect = 3e-16
 Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 59/289 (20%)

Query: 230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN 289
           S+    +   L++   D  + L D +    S  L G   S+  +A + D   +++ SS  
Sbjct: 32  SLGSSESGILLLALLSDSLVSLPDLS----SLLLRGHEDSITSIAFSPDGELLLSGSSDG 87

Query: 290 NLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAA--YDRTLKVWDL-HKGYC 344
            + +WD+++G   ++     H   V  + +S      ++ A+   D T+K+WDL   G  
Sbjct: 88  TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147

Query: 345 VNTIIFHS-NCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISL 402
           + T+  HS +  +LAFS DG+ + SG  +DG ++LWD++TGK LS +A H+   V+S++ 
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT-DPVSSLAF 206

Query: 403 SRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG 462
           S  G +++ SG                                             S+DG
Sbjct: 207 SPDGGLLIASG---------------------------------------------SSDG 221

Query: 463 SVYIWSISKADIVR-TLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
           ++ +W +S   ++R TL  H+  V+S  +S  G  LAS   +G + +W 
Sbjct: 222 TIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWD 269

Length = 466

>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16)

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 5/167 (2%)

Query: 8   REAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGS-----EWKEKADNLETELQQCY 62
           + A +  L  +    L  E     +  + S      GS     E ++K   L  EL + +
Sbjct: 28  QLADRTRLLKVENDALQAEKYEQQSSHSSSPSADGPGSDAAIAEMEQKLAKLREELTELH 87

Query: 63  KAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALE 122
           K +  L+++L++   E    +  +Q+ E  I  L+ E+T +  E   L+ EL+EK K  E
Sbjct: 88  KKRGELAQRLLLLNDELEQLRREIQQLEKTIAELRSEITSLETEIRDLREELQEKEKDNE 147

Query: 123 LVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNE 169
            +  E   +  +L  +  K +  + EN+ LV+RWM +K Q+AE +NE
Sbjct: 148 TLQDELISLNIELNALEEKLRKLQKENQELVERWMAKKGQEAEAMNE 194

Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. Length = 194

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 16/190 (8%)

Query: 254 TNTGSLSST---LYGCLGSVLDLAIT-HDNRSVIAASSSNNLYVWDVNSGRVRHT----- 304
           T+ G L+S    L G  G ++D+A    D + +  AS    +  W +    +        
Sbjct: 59  TDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPI 118

Query: 305 --LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSM 361
             L GHT KV  V     +   + SA  D  + VWD+ +G  V  I  HS+   +L +++
Sbjct: 119 VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178

Query: 362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN-- 419
           DG  + +   D  L + D + G ++S V AH+ A       ++  ++I+T G        
Sbjct: 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238

Query: 420 --LFDIRSLE 427
             L+D R + 
Sbjct: 239 IMLWDTRKMA 248

Length = 493

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 13/209 (6%)

Query: 3   QEEIAR-EAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQC 61
           +EEI   E  + AL+   +    E       + AL R + S     +++ + LE E+++ 
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELES----LEQRRERLEQEIEEL 833

Query: 62  YKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKAL 121
            +    L E+L     E    +  L+E +  +  L+ E  ++ DE  +L+ E EE  + L
Sbjct: 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893

Query: 122 ELVVSENQQIRAQLEEMTMKAKNAEAENKML-VDRWMLQKMQDAERLNEANALYEDMIDR 180
             + SE  +++ ++E++  + +  EA+ + L V+   L++  + E  +      E  I+R
Sbjct: 894 RELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953

Query: 181 LKASGLEKL------AKQQVDGVVRRSEE 203
           L+   +E L      A ++ + V  R EE
Sbjct: 954 LEEE-IEALGPVNLRAIEEYEEVEERYEE 981

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 44/191 (23%), Positives = 88/191 (46%), Gaps = 2/191 (1%)

Query: 1   MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQ 60
           +   E   EA++  LK L+K   ++E      +      +  + +E +E+ + LE    +
Sbjct: 198 LEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKAR 257

Query: 61  CYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA 120
             + +S   E L +   E R  + LL+E E  I  L+E   +I +   +L+  L   ++ 
Sbjct: 258 LLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE-GLRALLEE 316

Query: 121 LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR 180
           LE ++ + + +  +LE++  K +  E+E + L +          ERL E     E++   
Sbjct: 317 LEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKE 376

Query: 181 LKASGLEKLAK 191
           L+ + LE+L +
Sbjct: 377 LEKA-LERLKQ 386

Length = 908

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338
           SG +  TL GHT  V +V  S    +++ S + D T+K+WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338
           G++  TL GHT  V +V  S      + S + D T++VWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 10/203 (4%)

Query: 9   EAIKHALKALRKRH--LVEEGAHAPAIIALSRPIISQGSE----WKEKADNLETELQQCY 62
             ++ AL  LRK    L EE       +      IS   +     + + + LE  + Q  
Sbjct: 694 AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753

Query: 63  KAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALE 122
           K  + L  ++         ++  L E E+ I  L+ ++ Q+++E   L+  L+E    L 
Sbjct: 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813

Query: 123 LVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRW--MLQKMQDAE-RLNEANALYEDMID 179
           L+  E   +R +LE +  +    E   + L ++   + + ++     + E   L E++  
Sbjct: 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873

Query: 180 RLKASGLEKLAKQQVDGVVRRSE 202
            L+A  L + A  +    + RSE
Sbjct: 874 ELEAL-LNERASLEEALALLRSE 895

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++TLK HT PV S ++S  GK LAS   +G + +W
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 280 RSVIAASSSNNLY-VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338
           +S +A+S+   +  VWDV   ++   +  H  +V ++D S      + S + D ++K+W 
Sbjct: 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604

Query: 339 LHKGYCVNTIIFHSNCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKL-LSEVAAHSLAA 396
           +++G  + TI   +N   + F  + G+++  G  D  +  +D++  KL L  +  HS   
Sbjct: 605 INQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS-KT 663

Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA-----TGNRVASNWSRSCISPD 451
           V+ +    S  ++ +S  DN   L+D+ S+ + G          G+    N+    +S  
Sbjct: 664 VSYVRFVDSSTLV-SSSTDNTLKLWDL-SMSISGINETPLHSFMGHTNVKNFVGLSVS-- 719

Query: 452 ESYVAAGSADGSVYI-----------WSISKADIVRTLKEHTAP--VLSCSWSGLGKPLA 498
           + Y+A GS    V++           +     D V  L+   A   + S  W G    L 
Sbjct: 720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLV 779

Query: 499 SADKNG 504
           +A+  G
Sbjct: 780 AANSTG 785

Length = 793

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 8/140 (5%)

Query: 48  KEKADNLETELQQCYKAQSRLSEQLVV--EVAESRSSK--ALLQEKESLITSLQEELTQI 103
           KEK + L+ EL++       L + L    E  E    K  ALL+E E L  +L+EEL ++
Sbjct: 329 KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAEL 388

Query: 104 RDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQD 163
             E ++++ ELEE  + +E +    +++  +LE++  + K  EAE    ++    +  + 
Sbjct: 389 EAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAE----LEELQTELEEL 444

Query: 164 AERLNEANALYEDMIDRLKA 183
            E L E     E++ DRLK 
Sbjct: 445 NEELEELEEQLEELRDRLKE 464

Length = 1163

>gnl|CDD|150406 pfam09727, CortBP2, Cortactin-binding protein-2

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 15/158 (9%)

Query: 1   MSQEEIAREAIKHALKALRKRHLVEEGAHAPA-----IIALSRP-IISQGSEWKEKA--- 51
           M  E  AR+ +  ALKA R +  + E  +        ++AL R          +E     
Sbjct: 23  MEGELQARDDVIEALKAERTKVFLLEAKYGRFNPNDPLLALQRDAEAGAEDPEQEDIYEK 82

Query: 52  --DNLETELQQCYKAQSRLSEQLVV-EVAESRSSKALLQEKESLITSLQ---EELTQIRD 105
               L+  + +  + Q R+  QL+  E  + ++   L +EK   I  ++   +    +  
Sbjct: 83  PMSELDKVMAKQKETQRRMLAQLLAAEKRQRKTVLELEEEKRKHIRYMKKSDDFTNLLEQ 142

Query: 106 ECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAK 143
           E  +LK  LE++         E++++ A LEE   K K
Sbjct: 143 ERERLKKLLEQEKSQQAKKEQEHRKLLATLEEELGKLK 180

This entry is the first approximately 250 residues of cortactin-binding protein 2. In addition to being a positional candidate for autism this protein is expressed at highest levels in the brain in humans. The human protein has six associated ankyrin repeat domains pfam00023 towards the C-terminus which act as protein-protein interaction domains. Length = 193

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 23/123 (18%), Positives = 55/123 (44%), Gaps = 8/123 (6%)

Query: 37  SRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALL----QEKESL 92
              + ++  +   + + LE E+++    + +  ++L  E AE +     L    +E +  
Sbjct: 324 LAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379

Query: 93  ITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKML 152
               ++EL   R++  +LK E+ E  + L+ +  E Q++  +L ++       EA+   L
Sbjct: 380 FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439

Query: 153 VDR 155
            + 
Sbjct: 440 EEE 442

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 17/230 (7%)

Query: 48  KEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDEC 107
           +E+ + LE EL++  +    L E++     E    + LL+E E L+  L+E   ++ ++ 
Sbjct: 308 RERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKL 367

Query: 108 SQLKTELEEKIKALE----LVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQD 163
           S L  ELEE  +AL      + +E  +IR +LEE+  + ++ E   + L +R    K + 
Sbjct: 368 SALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEEL 427

Query: 164 AERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINA 223
            E   E   L  ++ +      LE+L +Q  +   R  E   E           + ++++
Sbjct: 428 KELEAELEELQTELEE--LNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSS 485

Query: 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDL 273
            E     +      A   +    +++         L S L G  G V +L
Sbjct: 486 LEARLDRL-----EAEQRASQGVRAVLEA------LESGLPGVYGPVAEL 524

Length = 1163

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 474 IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++RTLK HT PV S ++S  G  LAS   +G V VW
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 39/186 (20%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 2   SQEEIAREAIKHALKALRK--RHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQ 59
            +E   RE I+   K LR+    L+E      A+       + +     E+ + L+ +LQ
Sbjct: 494 KEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQ 553

Query: 60  -QCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRD---ECSQLKTELE 115
            Q  K + R  E  + E+ E      LL+ ++  +  L+E L +++    E  +  ++LE
Sbjct: 554 LQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLE 613

Query: 116 EKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYE 175
           E +++LEL      ++    EE  ++++  +   +  ++  +   +++ E   E     E
Sbjct: 614 ELLQSLEL-SEAENELEEAEEE--LESELEKLNLQAELEELLQAALEELEEKVEE---LE 667

Query: 176 DMIDRL 181
             I R 
Sbjct: 668 AEIRRE 673

Length = 908

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 341 KGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 379
            G  + T+  H+    ++AFS DG+ + SG  DG ++LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD 253
                  +  H G   S+ F  +   L SG  D +IKLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD 253
                +  H G   S+ F  +   L SG  D ++++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 7/208 (3%)

Query: 1   MSQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQ 60
              EE+ R+     LK        E       +  L   +     E +E+ + L+  L++
Sbjct: 709 RQLEELERQL--EELKRELAALEEELEQLQSRLEELEEEL----EELEEELEELQERLEE 762

Query: 61  CYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA 120
             +    L E L     E    +   Q  +  +  L+EEL +       L+ ELE   + 
Sbjct: 763 LEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQR 822

Query: 121 LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMID- 179
            E +  E +++  ++EE+  K    E E + L       K +  E   E   L +++ + 
Sbjct: 823 RERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL 882

Query: 180 RLKASGLEKLAKQQVDGVVRRSEEGAEF 207
             +   LE+  ++    +    EE  + 
Sbjct: 883 EEEKEELEEELRELESELAELKEEIEKL 910

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 6/138 (4%)

Query: 45  SEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIR 104
              +E  D L  EL    +  + L E+L        +++  L++ E  I  L E++  + 
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

Query: 105 DECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDA 164
            E  +L+  +EE    LE         RA LEE  +    +E E      R +  K  + 
Sbjct: 859 AEIEELEELIEELESELE----ALLNERASLEE-ALALLRSELEELSEELRELESKRSEL 913

Query: 165 ER-LNEANALYEDMIDRL 181
            R L E       +  RL
Sbjct: 914 RRELEELREKLAQLELRL 931

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 342 GYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 379
           G  + T+  H+    ++AFS DG  + SG  DG +R+WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 17/195 (8%)

Query: 3   QEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCY 62
           ++E +  A K      + R L E+   A  +      I  +  E KEK D +  +LQ+  
Sbjct: 33  RKEASELAEKRDELNAKVRELREK---AQELREERDEINEEVQELKEKRDEINAKLQELR 89

Query: 63  KAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDE------CSQLKTELEE 116
           K    L E+        RS K+L +E E L    Q  +    +E        +L+ ELE+
Sbjct: 90  KEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELED 149

Query: 117 KIKALEL------VVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLN-E 169
             KALE       + +E  +++ +  E+  K +   A         M++  ++A+ L  E
Sbjct: 150 AKKALEENEKLKELKAEIDELKKKAREIHEKIQ-ELANEAQEYHEEMIKLFEEADELRKE 208

Query: 170 ANALYEDMIDRLKAS 184
           A+ L+E+ ++  K  
Sbjct: 209 ADELHEEFVELSKKI 223

Length = 294

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 12/106 (11%)

Query: 64  AQSRLSEQLVVEVAESRSSKALLQEK----ESLITSLQEELTQIRDECSQLKTELEEKIK 119
           A+ RL  +L  E+AE +   A LQE+    +     L++EL+ +  E  +L+ EL    +
Sbjct: 64  ARERL-PELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQ 122

Query: 120 ALELVV---SENQQIRAQLEEMTMKAKNAEAENKMLVD----RWML 158
                +    EN+++R +L E+  + +  EAEN+ L +    RW L
Sbjct: 123 LSANAIELDEENRELREELAELKQENEALEAENERLQENEQRRWFL 168

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 36/196 (18%), Positives = 82/196 (41%), Gaps = 14/196 (7%)

Query: 3   QEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCY 62
           +E   RE +   L+ L       +      + AL   +       +E+   LE       
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELE------- 389

Query: 63  KAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALE 122
              + +  +L     E  S +  L+     +  L+EEL ++  E  +L+TELEE  + LE
Sbjct: 390 AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE 449

Query: 123 LVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLK 182
            +  + +++R +L+E  ++ + AE + ++   + + +++   E   +     +     ++
Sbjct: 450 ELEEQLEELRDRLKE--LERELAELQEEL---QRLEKELSSLEARLDRLEAEQRASQGVR 504

Query: 183 ASGLEKLAKQQVDGVV 198
           A  + +  +  + GV 
Sbjct: 505 A--VLEALESGLPGVY 518

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 10/208 (4%)

Query: 8   REAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSR 67
           +  ++    AL    L E       +    +    +  E   +   LE +L++     S 
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278

Query: 68  LSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELE-------EKIKA 120
           L E++     E  +    +   E     L+E L  +  +  +L+ +LE       E  + 
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338

Query: 121 LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDR 180
           L  +  + ++++ +LE +  + +  EAE + L  R    + +  E L    A  E  I  
Sbjct: 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELE-EQLETLRSKVAQLELQIAS 397

Query: 181 LKA--SGLEKLAKQQVDGVVRRSEEGAE 206
           L      LE   ++  D   R  +E  E
Sbjct: 398 LNNEIERLEARLERLEDRRERLQQEIEE 425

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 34/190 (17%), Positives = 77/190 (40%), Gaps = 2/190 (1%)

Query: 3   QEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCY 62
           + +   E ++  L  L +       A    +  L +    Q  + +E+ +     L++  
Sbjct: 182 EAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERL 241

Query: 63  KAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALE 122
                  E+L    A     ++L  E   +      EL ++ +E  +    LEE  + +E
Sbjct: 242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIE 301

Query: 123 LVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLK 182
            +  E + +RA LEE+    +  ++  + L    + +K++  E   E  A  ++ + +L 
Sbjct: 302 ELEEELEGLRALLEELEELLEKLKSLEERLEK--LEEKLEKLESELEELAEEKNELAKLL 359

Query: 183 ASGLEKLAKQ 192
              L++L ++
Sbjct: 360 EERLKELEER 369

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 48/170 (28%), Positives = 92/170 (54%), Gaps = 11/170 (6%)

Query: 45  SEWKEKADNLETELQQCYKAQSRLSEQLVVEVAE-SRSSKALLQEKESL---ITSLQEEL 100
            E +++ + L  E ++  + Q+ L E+   E  E  +  +AL ++KE++   + SL+EEL
Sbjct: 194 DEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEL 253

Query: 101 TQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEE--MTMKAKNAEAENKM-LVDRWM 157
            ++ +E S+L+  LEE  + LE     N++I+   EE  + +K K  E E ++  ++R +
Sbjct: 254 EKLTEEISELEKRLEEIEQLLE---ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSI 310

Query: 158 LQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEF 207
            +K ++ E   E  A  E  ID+L A  +E+L ++  +   RR +   E+
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAE-IEELEREIEEERKRRDKLTEEY 359

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 12/153 (7%)

Query: 48  KEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDEC 107
           +EK   LE  L +  K    L E+L          +  L+E    I++L+++L ++  E 
Sbjct: 690 EEKIAELEKALAELRKELEELEEEL-------EQLRKELEELSRQISALRKDLARLEAEV 742

Query: 108 SQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKML---VDRWMLQKMQDA 164
            QL+  + +  K L  + +E +++  +LEE   +   AEAE + L   +++   +     
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802

Query: 165 ERLNEANALYEDMIDRL--KASGLEKLAKQQVD 195
           E L+E  A    + +        LE L ++   
Sbjct: 803 EALDELRAELTLLNEEAANLRERLESLERRIAA 835

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 35/192 (18%), Positives = 80/192 (41%), Gaps = 11/192 (5%)

Query: 2   SQEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQC 61
           S+ + +  A K  LK L +     E         L   + ++    ++  + L  +L++ 
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKS-LKNELRSLEDLLEELRRQLEEL 714

Query: 62  YKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTE-------- 113
            +    L  +L     E    ++ L+E E  +  L+EEL ++++   +L+ E        
Sbjct: 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 114 --LEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEAN 171
             L+E+I+ LE      Q+   +LEE   +A+      +  ++    ++ +  + + E  
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 172 ALYEDMIDRLKA 183
              E++ ++L  
Sbjct: 835 EEIEELEEKLDE 846

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 24/176 (13%)

Query: 48  KEKADNLE--TELQQCYKAQ-SRLSEQLVVEVAESRSSKALLQEKESL--------ITSL 96
           +   +NLE   +L +  + Q  +L  Q   E AE    + L  E   L        +  L
Sbjct: 182 ERTEENLERLEDLLEELEKQLEKLERQ--AEKAERY--QELKAELRELELALLLAKLKEL 237

Query: 97  QEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRW 156
           ++EL ++ +E S+L+ ELEE  + LE    E ++++++LEE+  + +  + E        
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL------- 290

Query: 157 MLQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAEST 212
            L+  ++ E L    +L  + ++ L+ + LE+L ++  +   +      E     T
Sbjct: 291 -LELKEEIEELEGEISLLRERLEELE-NELEELEERLEELKEKIEALKEELEERET 344

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 48  KEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDEC 107
            EK   LE   ++  K ++ + + L    AE    +  ++E+      L EE  ++++E 
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLL----AEIEELEREIEEERKRRDKLTEEYAELKEEL 366

Query: 108 SQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERL 167
             L+ ELEE  K       E +  R +LE++  +    + E   L +       + +E L
Sbjct: 367 EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE----LQRLSEEL 422

Query: 168 NEANALYEDMIDRLKASGLEKLAKQ 192
            + NA    +  ++     EK  K 
Sbjct: 423 ADLNAAIAGIEAKINELEEEKEDKA 447

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 40/201 (19%), Positives = 85/201 (42%), Gaps = 8/201 (3%)

Query: 8   REAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSR 67
            E ++  L  L +     +     A   +   + S+  E +E+ + L+ EL +  +    
Sbjct: 241 LEELEEELSRLEEELEELQEELEEAEKEIEE-LKSELEELREELEELQEELLELKEEIEE 299

Query: 68  LSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSE 127
           L  ++ +        +  L+E E  +  L+E++  ++    +   E E  ++ LE +++E
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALK----EELEERETLLEELEQLLAE 355

Query: 128 NQQIRAQLEEMTMKAKNA-EAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGL 186
            ++ + +LEE         E   + L +     + + AE  NE   L +  I+ L+   L
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEEL-KREIESLEER-L 413

Query: 187 EKLAKQQVDGVVRRSEEGAEF 207
           E+L+++  D      E  AE 
Sbjct: 414 ERLSERLEDLKEELKELEAEL 434

Length = 1163

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 240 LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 299
           L SG  D S+KLW  N G    T+            +   RS+   S+ + +Y +D+ + 
Sbjct: 591 LASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP 650

Query: 300 RVRH-TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL 339
           ++   T+ GH+  V  V    + S  +VS++ D TLK+WDL
Sbjct: 651 KLPLCTMIGHSKTVSYVRF--VDSSTLVSSSTDNTLKLWDL 689

Length = 793

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 42/229 (18%)

Query: 3   QEEIAREAIKHALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEK---------ADN 53
           QEE   EA +   K  + R  ++E                   E KE+            
Sbjct: 109 QEEDEAEAQEKREKQKKLREEIDE------FNEERI-------ERKEEEKEREREEELKI 155

Query: 54  LETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQ---- 109
           LE + ++  + + R +E+   +  + R    L  ++E      +EEL ++R +  Q    
Sbjct: 156 LEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDE-REELDELRADLYQEEYE 214

Query: 110 ------LKTELEEKIKA-LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWM----L 158
                  K E E++ +   EL  +  +QI  + E +  +    EAE + ++++      L
Sbjct: 215 RKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEEL 274

Query: 159 QKMQDAER----LNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEE 203
           ++    +R    L     L + + ++ +    E+  + +    +R  E 
Sbjct: 275 EQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEA 323

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 43  QGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQ 102
           Q     E+   L+  L+   +  + L  QL   +A  R  + L Q+ E L  +LQE+ ++
Sbjct: 475 QEGSENERITELQQLLEDANRRNNELETQL--RLANQRILE-LQQQVEDLQKALQEQGSK 531

Query: 103 IRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKN 144
             ++ S LK++LEE ++ L     E Q+ R Q+EE+      
Sbjct: 532 -SEDSSLLKSKLEEHLEQLHEANEELQKKREQIEELEPDQDQ 572

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	510
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
PTZ00421	493	coronin; Provisional	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG1273	405	consensus WD40 repeat protein [General function pr	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	99.98
PTZ00421	493	coronin; Provisional	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG4227	609	consensus WD40 repeat protein [General function pr	99.93
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG1334	559	consensus WD40 repeat protein [General function pr	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG1310	758	consensus WD40 repeat protein [General function pr	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
PRK11028	330	6-phosphogluconolactonase; Provisional	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.86
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.82
PRK01742	429	tolB translocation protein TolB; Provisional	99.82
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.81
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.81
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.79
PRK03629	429	tolB translocation protein TolB; Provisional	99.79
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.77
KOG2321	703	consensus WD40 repeat protein [General function pr	99.77
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
PRK04922	433	tolB translocation protein TolB; Provisional	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
PRK05137	435	tolB translocation protein TolB; Provisional	99.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.74
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	99.73
PRK02889	427	tolB translocation protein TolB; Provisional	99.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.73
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.72
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.72
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.72
KOG1310	758	consensus WD40 repeat protein [General function pr	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.71
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.7
KOG2315	566	consensus Predicted translation initiation factor	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.68
KOG2321	703	consensus WD40 repeat protein [General function pr	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.65
PRK04792	448	tolB translocation protein TolB; Provisional	99.65
PRK00178	430	tolB translocation protein TolB; Provisional	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.62
KOG1334	559	consensus WD40 repeat protein [General function pr	99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.59
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.57
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.57
KOG2315	566	consensus Predicted translation initiation factor	99.57
KOG4547	541	consensus WD40 repeat-containing protein [General	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.56
KOG2314	698	consensus Translation initiation factor 3, subunit	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.55
KOG4547	541	consensus WD40 repeat-containing protein [General	99.55
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.54
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.54
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.53
PRK00178	430	tolB translocation protein TolB; Provisional	99.53
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.52
PRK01029	428	tolB translocation protein TolB; Provisional	99.52
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.52
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.52
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.51
PRK04792	448	tolB translocation protein TolB; Provisional	99.51
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.49
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.48
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.47
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.46
PRK01029	428	tolB translocation protein TolB; Provisional	99.45
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.43
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.42
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.37
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.37
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.37
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.37
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.37
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.37
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.37
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.35
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.35
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.34
COG4946	668	Uncharacterized protein related to the periplasmic	99.34
PRK04043	419	tolB translocation protein TolB; Provisional	99.33
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.32
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.29
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.27
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.27
COG4946	668	Uncharacterized protein related to the periplasmic	99.26
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.26
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.23
PRK04043	419	tolB translocation protein TolB; Provisional	99.22
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.2
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.2
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.2
KOG2314	698	consensus Translation initiation factor 3, subunit	99.18
PRK02888	635	nitrous-oxide reductase; Validated	99.18
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.16
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.14
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.13
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	99.13
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.13
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.11
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.1
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.08
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.08
KOG2695	425	consensus WD40 repeat protein [General function pr	99.07
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.04
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.04
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.03
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.02
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.01
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.0
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.0
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.97
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.97
KOG2695	425	consensus WD40 repeat protein [General function pr	98.97
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.94
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.93
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.93
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.86
COG3391	381	Uncharacterized conserved protein [Function unknow	98.84
PRK02888	635	nitrous-oxide reductase; Validated	98.83
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.83
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.81
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.81
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
COG3391	381	Uncharacterized conserved protein [Function unknow	98.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.72
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.71
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.71
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.69
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.69
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.68
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.66
KOG3621	726	consensus WD40 repeat-containing protein [General	98.66
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.63
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.57
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.54
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.54
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.53
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.53
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.53
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.51
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.45
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.43
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.43
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.4
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.4
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.34
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.31
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.28
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.28
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.27
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.25
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.25
KOG3621	726	consensus WD40 repeat-containing protein [General	98.22
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.17
PHA02713	557	hypothetical protein; Provisional	98.16
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.15
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.11
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.09
KOG2395	644	consensus Protein involved in vacuole import and d	98.08
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.06
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.05
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.04
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.04
COG5276	370	Uncharacterized conserved protein [Function unknow	98.01
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.01
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.99
PHA02713	557	hypothetical protein; Provisional	97.98
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.95
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.92
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.9
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.89
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.88
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.82
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.82
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.78
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.78
KOG2395	644	consensus Protein involved in vacuole import and d	97.77
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.75
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.73
PRK13616	591	lipoprotein LpqB; Provisional	97.72
PRK10115	686	protease 2; Provisional	97.72
PRK13616	591	lipoprotein LpqB; Provisional	97.71
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.7
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.68
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.67
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.66
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.6
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.59
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.58
PF08606	70	Prp19: Prp19/Pso4-like; InterPro: IPR013915 This r	97.56
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.53
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.5
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.49
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.47
KOG2444	238	consensus WD40 repeat protein [General function pr	97.45
PHA03098	534	kelch-like protein; Provisional	97.42
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.42
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.41
PRK09039	343	hypothetical protein; Validated	97.39
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.37
PRK11637	428	AmiB activator; Provisional	97.37
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.34
PHA03098	534	kelch-like protein; Provisional	97.32
PRK13684	334	Ycf48-like protein; Provisional	97.31
KOG2444	238	consensus WD40 repeat protein [General function pr	97.23
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.22
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	97.21
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.18
PRK11637	428	AmiB activator; Provisional	97.15
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.13
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.1
PHA02790	480	Kelch-like protein; Provisional	97.1
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.09
PHA02790	480	Kelch-like protein; Provisional	97.07
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	97.06
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.06
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.05
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	97.04
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	97.03
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.02
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.0
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	96.97
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.96
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.92
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.88
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.88
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.84
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.83
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.82
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.81
PRK10884	206	SH3 domain-containing protein; Provisional	96.8
PRK09039	343	hypothetical protein; Validated	96.8
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.77
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.67
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.61
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.6
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.59
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	96.55
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	96.52
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.51
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.51
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.5
PLN02153	341	epithiospecifier protein	96.48
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.45
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.43
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.42
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.41
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.4
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	96.38
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.34
PRK10115	686	protease 2; Provisional	96.33
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.32
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.32
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.31
PLN02153	341	epithiospecifier protein	96.3
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	96.3
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.26
PRK15422	79	septal ring assembly protein ZapB; Provisional	96.25
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.25
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	96.23
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.23
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.23
PRK10884	206	SH3 domain-containing protein; Provisional	96.22
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.2
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.19
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	96.17
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.17
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	96.15
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.14
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.14
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.11
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.1
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.03
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.02
COG5167	776	VID27 Protein involved in vacuole import and degra	95.97
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	95.96
COG4372	499	Uncharacterized protein conserved in bacteria with	95.94
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	95.93
COG4026	290	Uncharacterized protein containing TOPRIM domain,	95.93
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.9
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	95.89
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.87
PRK05560	805	DNA gyrase subunit A; Validated	95.87
COG5167	776	VID27 Protein involved in vacuole import and degra	95.86
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.86
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.84
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	95.84
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.84
KOG2247	615	consensus WD40 repeat-containing protein [General	95.83

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=5.7e-58  Score=396.14  Aligned_cols=452  Identities=44%  Similarity=0.653  Sum_probs=401.1

Q ss_pred             cccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           40 IISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIK  119 (510)
Q Consensus        40 ~~~~~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~  119 (510)
                      ..+...++++++..+..+|++++++.+.+..|+..++.+.+.+++.+++++.++++|++|..++++++-+..  ..+.+.
T Consensus         4 ~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~--a~~~~~   81 (459)
T KOG0288|consen    4 LYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREE--ATEKTL   81 (459)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            344556899999999999999999999999999999999999999999999999999999999999987743  344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhcchHHhhhhcCCceEE
Q 010470          120 ALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVR  199 (510)
Q Consensus       120 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  199 (510)
                      ....+..|.++.+...+..+...+..+-+|.++.-++|..+|+.++.+++...          ...+......+.+|.+.
T Consensus        82 t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~----------~l~~~~~r~~s~~ga~~  151 (459)
T KOG0288|consen   82 TVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALK----------DLGLKDLRRQSVDGAVP  151 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhh----------hcchhhhhhhhhcCCCc
Confidence            44556667777777776677777778888999999999999999988876332          22333344455666655


Q ss_pred             ecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEec
Q 010470          200 RSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITH  277 (510)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~  277 (510)
                      ....  .++.+..+|..+...+..|.+.|..+.|-++...|++|+.|..|++|++..++  .+.++.+..++|+.+.|.+
T Consensus       152 ~~~~--d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~  229 (459)
T KOG0288|consen  152 RTED--DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS  229 (459)
T ss_pred             cccC--chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC
Confidence            4444  56788999999999999999999999999999999999999999999998776  6788889999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEE
Q 010470          278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL  357 (510)
Q Consensus       278 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i  357 (510)
                      ++++++++++|+.+++|++...+...++.+|.+.|+++.|.. ....+++|+.|.+|+.||+....|.+++...+.++.|
T Consensus       230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI  308 (459)
T KOG0288|consen  230 DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDI  308 (459)
T ss_pred             CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccce
Confidence            999999999999999999999999999999999999999987 4555999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC
Q 010470          358 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN  437 (510)
Q Consensus       358 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  437 (510)
                      +.+  +..+++|..|++|++||++++.+......+  +.|+++..+++|..+.+++.|.++.++|+++.+....+...+.
T Consensus       309 ~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~  384 (459)
T KOG0288|consen  309 VCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF  384 (459)
T ss_pred             Eec--ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence            886  677899999999999999999999998887  7999999999999999999999999999999999999999999


Q ss_pred             eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCc--CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          438 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA--PVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       438 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ...+.|+.++|||++.|+++||.||.|+||++.++++...+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       385 k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  385 KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            9999999999999999999999999999999999999988876444  599999999999999999999999994

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.6e-53  Score=361.18  Aligned_cols=310  Identities=27%  Similarity=0.419  Sum_probs=282.8

Q ss_pred             chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-eecc
Q 010470          185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTL  263 (510)
Q Consensus       185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~  263 (510)
                      .-..+++|+.|.++|+|+...         ..+.++.++|...|.|++|+|||+.||+|+.||+|++||..+|+. ...+
T Consensus       126 ~g~~l~tGsGD~TvR~WD~~T---------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l  196 (480)
T KOG0271|consen  126 TGSRLVTGSGDTTVRLWDLDT---------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL  196 (480)
T ss_pred             CCceEEecCCCceEEeeccCC---------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc
Confidence            345688899999999999665         457889999999999999999999999999999999999998876 4568


Q ss_pred             cccccceeEEEEec-----CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          264 YGCLGSVLDLAITH-----DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       264 ~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      .+|...|++++|.|     ..++|++++.||.|+|||+..+.++..+.+|+.+|+|+.|-  +..++++|+.|++|++|+
T Consensus       197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~  274 (480)
T KOG0271|consen  197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWR  274 (480)
T ss_pred             cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEE
Confidence            89999999999965     67799999999999999999999999999999999999995  478999999999999999


Q ss_pred             CCCCeEeeeeeecCc-eeEEEEc-----------CCCC-------------------------EEEEecCCCcEEEEECC
Q 010470          339 LHKGYCVNTIIFHSN-CNALAFS-----------MDGQ-------------------------TIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       339 ~~~~~~~~~~~~~~~-i~~i~~~-----------~~~~-------------------------~l~~~~~dg~i~i~d~~  381 (510)
                      ...|.+.+.+.+|.. |+.++++           |.++                         .+++|+.|.++.+|+..
T Consensus       275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~  354 (480)
T KOG0271|consen  275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF  354 (480)
T ss_pred             ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence            999999999988854 7777765           3333                         49999999999999986


Q ss_pred             CC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC
Q 010470          382 TG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA  460 (510)
Q Consensus       382 ~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  460 (510)
                      .. +++....+|. .-|+.+.||||++++++++.|..|++||.++|+.+.+|++|-..+..    ++|+.|.++|++|+.
T Consensus       355 ~~kkpi~rmtgHq-~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq----vawsaDsRLlVS~Sk  429 (480)
T KOG0271|consen  355 KSKKPITRMTGHQ-ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ----VAWSADSRLLVSGSK  429 (480)
T ss_pred             ccccchhhhhchh-hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEE----EEeccCccEEEEcCC
Confidence            54 4777778877 89999999999999999999999999999999999999999888876    999999999999999


Q ss_pred             CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          461 DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       461 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |.++++|++.+.++...+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       430 DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  430 DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999999999999999999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.2e-51  Score=352.83  Aligned_cols=282  Identities=24%  Similarity=0.373  Sum_probs=269.3

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecC--CCEEEEEeCCCeEEEEEcCCCC
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLYVWDVNSGR  300 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  300 (510)
                      |-+.+|..+.||+|++.|+|||.+|.++||+..+...+.++.+|...|.++.|+|.  +..+++|+.||++++|++.+..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            45678999999999999999999999999999999999999999999999999997  5689999999999999999989


Q ss_pred             eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470          301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWD  379 (510)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d  379 (510)
                      ++..+.+|...|..++|+| ++.+|+|++.|.+-++||++++..+....+|+ .|.+++|.|||..+++|+.|..-+|||
T Consensus       253 ~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD  331 (459)
T ss_pred             chhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence            9999999999999999999 99999999999999999999998887777775 499999999999999999999999999


Q ss_pred             CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC-CCCEEEEE
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAG  458 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~  458 (510)
                      +++|+++..+.+|. .+|.++.|+|+|..|++|+.|++++|||++....+.++..|.+.+..    ++|+| .|.+|+++
T Consensus       332 lRtgr~im~L~gH~-k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~----Vk~~p~~g~fL~Ta  406 (459)
T KOG0272|consen  332 LRTGRCIMFLAGHI-KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQ----VKYSPQEGYFLVTA  406 (459)
T ss_pred             cccCcEEEEecccc-cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhh----eEecccCCeEEEEc
Confidence            99999999999977 99999999999999999999999999999999999999999888766    99998 78999999


Q ss_pred             cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          459 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       459 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +.|++++||...++.+++++.+|.+.|.++.++||+.++++++.|.++++|.
T Consensus       407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999999999999999999999999994

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-51  Score=350.51  Aligned_cols=290  Identities=26%  Similarity=0.477  Sum_probs=264.7

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  294 (510)
                      ..|...+.||.++|.|+.|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||.|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            56888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCe-eEeecCCCCceEEEEEecC----CCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEE
Q 010470          295 DVNSGRV-RHTLTGHTDKVCAVDVSKI----SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFS  368 (510)
Q Consensus       295 d~~~~~~-~~~~~~~~~~v~~i~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~  368 (510)
                      |..+|+. ...+.+|...|++++|.|.    ...++++++.||.|+|||+..+.++..+.+|. +|+|+.|-- ..+|++
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliyS  263 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYS  263 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEe
Confidence            9998874 5678999999999999874    35689999999999999999999999998885 599999963 358899


Q ss_pred             ecCCCcEEEEECCCCceeeeecccccccEEEEEEc-----------CCCC-------------------------EEEEE
Q 010470          369 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS-----------RSGN-------------------------IILTS  412 (510)
Q Consensus       369 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~-----------~~~~-------------------------~l~~~  412 (510)
                      |+.|++|++|+...|.....+.+|. ..|+.++.+           |.++                         .+++|
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHa-hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHA-HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccc-hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence            9999999999999999999999987 888888776           3344                         49999


Q ss_pred             ecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEe
Q 010470          413 GRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS  491 (510)
Q Consensus       413 ~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  491 (510)
                      ++|.++.+|+... .+++....+|...+..    +.||||++||++++.|.+|++|+..+|+.+.+|++|-.+|..++|+
T Consensus       343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~----V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws  418 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRMTGHQALVNH----VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS  418 (480)
T ss_pred             cCCceEEEecccccccchhhhhchhhheee----EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec
Confidence            9999999999764 4466666677766655    9999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEeeCCCeEEEcC
Q 010470          492 GLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       492 ~~~~~l~s~~~dg~i~iwd  510 (510)
                      .|.++|++|+.|.++++||
T Consensus       419 aDsRLlVS~SkDsTLKvw~  437 (480)
T KOG0271|consen  419 ADSRLLVSGSKDSTLKVWD  437 (480)
T ss_pred             cCccEEEEcCCCceEEEEE
Confidence            9999999999999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.4e-49  Score=325.86  Aligned_cols=290  Identities=21%  Similarity=0.355  Sum_probs=271.4

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      +...+++||.+.|.++.|++|+++|++++.||.+.|||.-+......++-....|..++|+|.|+++++|+-|+...||+
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            35588999999999999999999999999999999999999888888888899999999999999999999999999999


Q ss_pred             cCCC------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcC-CCCEEE
Q 010470          296 VNSG------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIF  367 (510)
Q Consensus       296 ~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~-~~~~l~  367 (510)
                      +.+.      ...+.+.+|.+.+.|+.|.+  +..|++++.|.+..+||+++++.+..|.+|. .|.++.++| +++.++
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence            9855      35667899999999999975  6789999999999999999999999998884 599999999 999999


Q ss_pred             EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC  447 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  447 (510)
                      +|+.|+..++||+|.+..++.|.+|. +.|++++|.|+|.-|++|+.|++.++||++..+.+..+.  ......++++++
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF~ghe-sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys--~~~~~~gitSv~  280 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTFEGHE-SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS--HDSIICGITSVA  280 (343)
T ss_pred             ecccccceeeeeccCcceeEeecccc-cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec--cCcccCCceeEE
Confidence            99999999999999999999999998 999999999999999999999999999999988888876  344556788899


Q ss_pred             EcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          448 ISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       448 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ||..|++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||..|++|+.|..++||.
T Consensus       281 FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  281 FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999999999999999999999999999999999999999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.7e-44  Score=300.39  Aligned_cols=292  Identities=25%  Similarity=0.436  Sum_probs=268.7

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCC-CCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN-TGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  294 (510)
                      .+...+.+|.+.|..+.|+|+|.+|||||.|..|.+|++. ..+....+.+|.+.|..+.|.+|++.+++++.|.+|+.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            3556788999999999999999999999999999999964 344567788999999999999999999999999999999


Q ss_pred             EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCc
Q 010470          295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN  374 (510)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~  374 (510)
                      |+++|+.+..+++|..-|.++..+..+..++.+++.||++++||+++..+++++.....++++.|..++..+++|+-|+.
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            99999999999999999999986665677888999999999999999999999998999999999999999999999999


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC----ceeeeEeecCCCeeecCceeEEEcC
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS----LEVCGSLRATGNRVASNWSRSCISP  450 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~s~  450 (510)
                      |++||++.+.....+.+|. .+|+.+..+|+|.++.+-+.|.++++||++-    ...+..+.++..........++|+|
T Consensus       198 ikvWd~r~~d~~~~lsGh~-DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp  276 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHA-DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP  276 (338)
T ss_pred             eeeeccccCcceEEeeccc-CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence            9999999999999999998 9999999999999999999999999999984    3446777777666655566689999


Q ss_pred             CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          451 DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       451 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      ++.++.+|+.|..+++||......+..+++|.+.|+++.|+|....|.+|+.|.+|++
T Consensus       277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            9999999999999999999999999999999999999999999999999999999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-43  Score=288.66  Aligned_cols=286  Identities=27%  Similarity=0.478  Sum_probs=251.6

Q ss_pred             cceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCC-----CCcceecccccccceeEEEEecCCCEEEEEeCCC
Q 010470          216 TCKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTN-----TGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN  289 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  289 (510)
                      ....++++|++.|+.++..+. ...+++++.|.++.+|++.     .|.+++.+.||...|..+..++||++.++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            356689999999999999986 5688999999999999875     4667889999999999999999999999999999


Q ss_pred             eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC---ceeEEEEcCC--CC
Q 010470          290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS---NCNALAFSMD--GQ  364 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~i~~i~~~~~--~~  364 (510)
                      .+++||+.+++..+.|.+|...|.+++|+| ++..+++|+.|.+|++||+. +.+..++....   -|+|++|+|+  ..
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence            999999999999999999999999999999 89999999999999999996 55555655443   3999999997  78


Q ss_pred             EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470          365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS  444 (510)
Q Consensus       365 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  444 (510)
                      +|++++.|++|++||+++.+....+.+|. +.++.+.+||||...++|+.||.+.+||++.++.+..+.... .+    .
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~-~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~-~v----~  237 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIGHS-GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD-IV----N  237 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhcccccc-ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC-eE----e
Confidence            99999999999999999999988888887 999999999999999999999999999999999877775443 33    3


Q ss_pred             eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc----c-----CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE----H-----TAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       445 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~-----~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .++|+|+.-+|+.+...+ |+|||+.++..+..++.    .     .....+++|++||..|++|..|+.|++|.
T Consensus       238 sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  238 SLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             eEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            489999988888877554 99999999988777643    1     12246789999999999999999999993

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.6e-45  Score=317.78  Aligned_cols=268  Identities=23%  Similarity=0.377  Sum_probs=252.7

Q ss_pred             hHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecC--CCEEEEeeCCCeEEEEeCCCCcceecc
Q 010470          186 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYN--SARLISGGQDKSIKLWDTNTGSLSSTL  263 (510)
Q Consensus       186 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~  263 (510)
                      ...+++++.+|.+++|+...         .....+|.||.+.|.++.|+|.  +..+|||+.||++++|++++..++..+
T Consensus       187 s~~laT~swsG~~kvW~~~~---------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l  257 (459)
T KOG0272|consen  187 SKHLATGSWSGLVKVWSVPQ---------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL  257 (459)
T ss_pred             CCeEEEeecCCceeEeecCC---------cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh
Confidence            45678899999999998544         2467899999999999999996  568999999999999999999999999


Q ss_pred             cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY  343 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~  343 (510)
                      .+|...|..++|+|+|++|.+++.|.+-++||+.++..+....||...|.+++|+| ++.++++||.|..-+|||+++|.
T Consensus       258 ~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr  336 (459)
T KOG0272|consen  258 EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGR  336 (459)
T ss_pred             hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCc
Confidence            99999999999999999999999999999999999999888899999999999999 99999999999999999999999


Q ss_pred             EeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEE
Q 010470          344 CVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLF  421 (510)
Q Consensus       344 ~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~  421 (510)
                      ++..+.+|. +|.++.|+|+|..+++|+.|++++|||++..+.+..+..|. .-|+.++|+| .|.+|++++.|++++||
T Consensus       337 ~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~-nlVS~Vk~~p~~g~fL~TasyD~t~kiW  415 (459)
T KOG0272|consen  337 CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHS-NLVSQVKYSPQEGYFLVTASYDNTVKIW  415 (459)
T ss_pred             EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccccc-chhhheEecccCCeEEEEcccCcceeee
Confidence            999998885 59999999999999999999999999999999999999988 8999999999 78899999999999999


Q ss_pred             EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      ..+++.+++.+.+|...+.+    +.++||+.+|++++.|.++++|.
T Consensus       416 s~~~~~~~ksLaGHe~kV~s----~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  416 STRTWSPLKSLAGHEGKVIS----LDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCCCcccchhhcCCccceEE----EEeccCCceEEEeccCceeeecc
Confidence            99999999999999998876    99999999999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-42  Score=281.83  Aligned_cols=267  Identities=26%  Similarity=0.449  Sum_probs=242.5

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC--eeEeecCCCCceEEE
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR--VRHTLTGHTDKVCAV  315 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i  315 (510)
                      -+|+++|.|.+|++|...+|.+.+++....+.|+.+.+.|+++.|++++. ..|++||++++.  ++.+|.+|...|+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            48999999999999999999999999988999999999999999988876 479999999876  688999999999999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc
Q 010470          316 DVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA  395 (510)
Q Consensus       316 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  395 (510)
                      .|.. +++.+++||.||+++|||++...+.+.+...++|+++..+|+...|++|..+|.|++||+....+...+......
T Consensus        90 gF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            9998 899999999999999999999888888889999999999999999999999999999999988777777666668


Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEcCCc------eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSL------EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       396 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      +|.++.+.|||.+++++...|..++|++-+.      .++..++.+...+.    .+.+|||+++|+++|.|.+++||++
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il----~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL----RCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE----EEEECCCCcEEEeecCCceEEEEec
Confidence            9999999999999999999999999998753      34445555554443    3789999999999999999999999


Q ss_pred             CCc-ceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          470 SKA-DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       470 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++. +....+.+|...+.+++||.||.||++++.|+.+++||
T Consensus       245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence            987 66778889999999999999999999999999999997

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.3e-44  Score=316.41  Aligned_cols=297  Identities=21%  Similarity=0.393  Sum_probs=265.6

Q ss_pred             cCCCccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCC-CcceecccccccceeEEEEecCCCEEEEEeCC
Q 010470          211 STVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNT-GSLSSTLYGCLGSVLDLAITHDNRSVIAASSS  288 (510)
Q Consensus       211 ~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  288 (510)
                      ..+|.+..+++.||+.+|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|.+++|+++|..+++++.|
T Consensus       200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence            4468889999999999999999999 889999999999999999865 89999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEE
Q 010470          289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIF  367 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~  367 (510)
                      +.|++||+++|+++..+. -...++|+.|+|++.+.|++|+.|+.|+.||+++++.++.+..+ +.+..+.|-++|+.++
T Consensus       280 ~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFi  358 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFI  358 (503)
T ss_pred             eeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEe
Confidence            999999999999999887 45678999999977799999999999999999999999888776 5699999999999999


Q ss_pred             EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce---eeeEeecCCCeeecCce
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE---VCGSLRATGNRVASNWS  444 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~  444 (510)
                      +.+.|++++||+.+.+-++..+.........++..+|+++++++-+.|+.|.+|.+...-   ....+.+|  .+...-+
T Consensus       359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh--~vaGys~  436 (503)
T KOG0282|consen  359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH--SVAGYSC  436 (503)
T ss_pred             eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce--eccCcee
Confidence            999999999999999888777766655678899999999999999999999999875321   12223333  3333445


Q ss_pred             eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEeeCCCeEEEcC
Q 010470          445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASADKNGVVCVWT  510 (510)
Q Consensus       445 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd  510 (510)
                      .+.|||||.+|++|+.||.+.+||.++-+.+..++.|..++..+.|+|... .+|+||.||.|++||
T Consensus       437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            689999999999999999999999999999999999999999999999865 789999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-42  Score=294.85  Aligned_cols=291  Identities=25%  Similarity=0.442  Sum_probs=273.6

Q ss_pred             CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      ++...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+.+|...+.+++|+..|+++++++.|=.+.+
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L  176 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL  176 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence            34677788999999999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             EEcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecC
Q 010470          294 WDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       294 wd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~  371 (510)
                      ||..+ .+++..+.+|...|.++.|-| .+.++++++.|.+|+.|++.+|.++.++..+.. +..+..+.||.++++++.
T Consensus       177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~  255 (406)
T KOG0295|consen  177 WDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN  255 (406)
T ss_pred             eeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence            99987 567888899999999999999 689999999999999999999999999999876 899999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccccccEEEEEEcCC---------------CCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470          372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS---------------GNIILTSGRDNLHNLFDIRSLEVCGSLRATG  436 (510)
Q Consensus       372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~---------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  436 (510)
                      |.+|++|-+.++.+...+..|. .+|.+++|-|.               +.++.+++.|++|++||+.++.++.++.+|.
T Consensus       256 dqtl~vW~~~t~~~k~~lR~hE-h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd  334 (406)
T KOG0295|consen  256 DQTLRVWVVATKQCKAELREHE-HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD  334 (406)
T ss_pred             CceEEEEEeccchhhhhhhccc-cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc
Confidence            9999999999998888888887 88999999762               3589999999999999999999999999999


Q ss_pred             CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          437 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       437 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +.+..    ++|+|.|+||+++.+|+++++||+.++++..++..|..-|+++.|+.+..+++||+-|-.+++|.
T Consensus       335 nwVr~----~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  335 NWVRG----VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ceeee----eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            98877    99999999999999999999999999999999999999999999999999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.9e-42  Score=287.08  Aligned_cols=270  Identities=25%  Similarity=0.409  Sum_probs=244.5

Q ss_pred             chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC------c
Q 010470          185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG------S  258 (510)
Q Consensus       185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~  258 (510)
                      ....+++++.||.+.+|+.-.         ....+.++-....|..++|+|.|+++|+||-|+...||++.+.      +
T Consensus        66 Dsr~ivSaSqDGklIvWDs~T---------tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~  136 (343)
T KOG0286|consen   66 DSRRIVSASQDGKLIVWDSFT---------TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR  136 (343)
T ss_pred             CcCeEEeeccCCeEEEEEccc---------ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence            445678889999999998543         3355666667788999999999999999999999999999754      3


Q ss_pred             ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      ..+.+.+|.+.+.++.|.+ +..|++++.|.+..+||+++++.+..|.+|.+.|.++.++|.+++.+++|+.|+..++||
T Consensus       137 v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD  215 (343)
T KOG0286|consen  137 VSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWD  215 (343)
T ss_pred             eeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeee
Confidence            4567889999999999987 556999999999999999999999999999999999999998899999999999999999


Q ss_pred             CCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCC
Q 010470          339 LHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDN  416 (510)
Q Consensus       339 ~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~  416 (510)
                      ++.+.++++|.+| +.|++++|.|+|.-|++|+.|++.++||+|....+..+.... ..+|++++||..|++|++|..|.
T Consensus       216 ~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~  295 (343)
T KOG0286|consen  216 VRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF  295 (343)
T ss_pred             ccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence            9999999999988 569999999999999999999999999999988887776432 36899999999999999999999


Q ss_pred             cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          417 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      .+.+||.-+++.+..+.+|.+.+.+    +..+|||.-+++|+.|..++||.
T Consensus       296 ~c~vWDtlk~e~vg~L~GHeNRvSc----l~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  296 TCNVWDTLKGERVGVLAGHENRVSC----LGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ceeEeeccccceEEEeeccCCeeEE----EEECCCCcEEEecchhHheeecC
Confidence            9999999999999999999998876    99999999999999999999994

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-41  Score=291.76  Aligned_cols=297  Identities=24%  Similarity=0.401  Sum_probs=258.8

Q ss_pred             ccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC---cceecccccccceeEEEEecCCCEEEE
Q 010470          208 FAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTLYGCLGSVLDLAITHDNRSVIA  284 (510)
Q Consensus       208 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~  284 (510)
                      .....+|.+..+.+..|.+.|.-+.||++|++||+++.|.+..+|.+...   +..+++.+|..+|..+.|+||.+++++
T Consensus       207 c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLla  286 (519)
T KOG0293|consen  207 CGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLA  286 (519)
T ss_pred             cCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEe
Confidence            45667899999999999999999999999999999999999999987543   347788999999999999999999999


Q ss_pred             EeCCCeEEEEEcCCCCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcC
Q 010470          285 ASSSNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSM  361 (510)
Q Consensus       285 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~  361 (510)
                      |+.+..+.+||+.+|...+.+. ++...+.+++|.| ++..+++|+.|++|..||+. |........-  ..+.++++++
T Consensus       287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~  364 (519)
T KOG0293|consen  287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITY  364 (519)
T ss_pred             cCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcC
Confidence            9999999999999999888775 3568899999999 89999999999999999996 4444333332  3489999999


Q ss_pred             CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec
Q 010470          362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS  441 (510)
Q Consensus       362 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  441 (510)
                      ||+++++.+.|..|++|+..+......+..+  .+|+++++|.+|+++++.-.+..+++||+.....+..+.++..... 
T Consensus       365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f-  441 (519)
T KOG0293|consen  365 DGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF-  441 (519)
T ss_pred             CCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccce-
Confidence            9999999999999999998766555455544  7999999999999999999999999999998888888877765443 


Q ss_pred             CceeEEEcC-CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEeeCCCeEEEcC
Q 010470          442 NWSRSCISP-DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASADKNGVVCVWT  510 (510)
Q Consensus       442 ~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd  510 (510)
                       +...||.- +..++++||.|+.|+||+..+|+++..+.||...|++++|+|..+ ++|++|+||+|+||.
T Consensus       442 -iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  442 -IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             -EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence             23356654 558999999999999999999999999999999999999999876 789999999999993

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.3e-41  Score=288.05  Aligned_cols=292  Identities=20%  Similarity=0.402  Sum_probs=264.5

Q ss_pred             ccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC
Q 010470          210 ESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN  289 (510)
Q Consensus       210 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  289 (510)
                      +-..|.+....+.||.+.|.|+++.|...+|++|+.|++|+|||+.+|++..++.||...|..+++++...|+++++.|+
T Consensus       136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk  215 (460)
T KOG0285|consen  136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK  215 (460)
T ss_pred             cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence            34466778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEE
Q 010470          290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFS  368 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~  368 (510)
                      .|+.||++.++.++.+.+|-..|.|++.+| .-..|++|+.|.++++||+++...+..+.+| .+|..+.+.|....+++
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit  294 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT  294 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence            999999999999999999999999999999 7889999999999999999999999999877 45999999998889999


Q ss_pred             ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE
Q 010470          369 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI  448 (510)
Q Consensus       369 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (510)
                      |+.|++|++||++.|+....+..|. ..+.+++.+|....|++++.| .|+-|++..+..+..+.++...+..    ++.
T Consensus       295 ~S~D~tvrlWDl~agkt~~tlt~hk-ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iint----l~~  368 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTMITLTHHK-KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINT----LSV  368 (460)
T ss_pred             ecCCceEEEeeeccCceeEeeeccc-ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeee----eee
Confidence            9999999999999999998888877 899999999999999998877 5889999999998888888776654    665


Q ss_pred             cCCCCEEEEEcCCCeEEEEeCCCcceeeccc-----c---cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          449 SPDESYVAAGSADGSVYIWSISKADIVRTLK-----E---HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ..|| ++++|+++|.+.+||..+|-....+.     +   ....|.+.+|...|..|++|..|.+|++|
T Consensus       369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~  436 (460)
T KOG0285|consen  369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY  436 (460)
T ss_pred             ccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence            5554 77889999999999999886554442     1   34578999999999999999999999999

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-41  Score=269.85  Aligned_cols=289  Identities=24%  Similarity=0.446  Sum_probs=258.0

Q ss_pred             CCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeE
Q 010470          212 TVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNL  291 (510)
Q Consensus       212 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  291 (510)
                      ..|.+..+.+.+|.++|.++.|+-+|+|.++++.|.+|++|++..|.+++++.+|...|..++.+.|+..+++|+.|..|
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence            46777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEeeeeeec-CceeEEEEcCCCCEEEE
Q 010470          292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG--YCVNTIIFH-SNCNALAFSMDGQTIFS  368 (510)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~-~~i~~i~~~~~~~~l~~  368 (510)
                      .+||+++|+..+.+.+|.+.|+.+.|+. +...+++|+.|.++++||.++.  ++++.+... ..|.++.+.  +..|++
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva  160 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA  160 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence            9999999999999999999999999998 8899999999999999999865  456655443 458888774  778999


Q ss_pred             ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE
Q 010470          369 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI  448 (510)
Q Consensus       369 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (510)
                      |+.||+++.||++.|.......+   .+|++++|+++++..++++.|+++++.|-.+++.+..+.+|.+.-..  ...++
T Consensus       161 GS~DGtvRtydiR~G~l~sDy~g---~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk--ldc~l  235 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSSDYFG---HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK--LDCCL  235 (307)
T ss_pred             eccCCcEEEEEeecceeehhhcC---CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee--eeeee
Confidence            99999999999999987766554   57999999999999999999999999999999999999988776543  33678


Q ss_pred             cCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcC-EEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          449 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAP-VLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      +.....+++|+.||.|++||+.....+..+..|... |.+++++|.-.-|+++... .+.+|
T Consensus       236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~  296 (307)
T KOG0316|consen  236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW  296 (307)
T ss_pred             cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence            888899999999999999999999999999888877 8999999998877777543 34444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.4e-42  Score=297.97  Aligned_cols=282  Identities=22%  Similarity=0.409  Sum_probs=253.9

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      ..-..+|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+.+-.. 
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-  171 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-  171 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-
Confidence            3445689999999999999999999999999987766666778999999999999999999999999999999976444 


Q ss_pred             eEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470          302 RHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWD  379 (510)
Q Consensus       302 ~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d  379 (510)
                      ++.+.. |...|.+++|+| ++..|++++.||+|+|||....+.-..+.+|+ .|.++.|+|....|++|+.|..|++||
T Consensus       172 Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            444444 559999999999 78899999999999999999888877777765 599999999999999999999999999


Q ss_pred             CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC-CCCEEEEE
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAG  458 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~  458 (510)
                      .+++.++.++..|. ..|..+.|+|++++|++++.|..+++||+++.+.+..+++|...+..    +.|+| ...+|.+|
T Consensus       251 prSg~cl~tlh~HK-ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~----~~WhP~~~~lftsg  325 (464)
T KOG0284|consen  251 PRSGSCLATLHGHK-NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS----LTWHPLNESLFTSG  325 (464)
T ss_pred             CCCcchhhhhhhcc-ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee----eccccccccceeec
Confidence            99999999999888 89999999999999999999999999999999989999988877765    88999 56788999


Q ss_pred             cCCCeEEEEeCCCcceeecc-cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          459 SADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       459 ~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +.||.|..|.+...+++..+ .+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus       326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            99999999999876766665 45999999999999999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.1e-40  Score=267.73  Aligned_cols=287  Identities=18%  Similarity=0.338  Sum_probs=250.3

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTLYG  265 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~  265 (510)
                      .+++.+.|.+||+|....         ..|..++.-..+.|+.+.+.|+++.||+++. ..|++||++++++  +.++.+
T Consensus        12 iLvsA~YDhTIRfWqa~t---------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~   81 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALT---------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEG   81 (311)
T ss_pred             EEEeccCcceeeeeehhc---------CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEec
Confidence            366788999999999554         5688999988999999999999999999885 5799999988764  888999


Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      |...|+++.|..+|+.+++|+.||+++|||++...+.+.+. |..+|+++..+| +...|++|..+|.|++||+....+.
T Consensus        82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccc
Confidence            99999999999999999999999999999999877666666 779999999999 8889999999999999999988777


Q ss_pred             eeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCC------ceeeeecccccccEEEEEEcCCCCEEEEEecCCc
Q 010470          346 NTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG------KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL  417 (510)
Q Consensus       346 ~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  417 (510)
                      ..+...  ..+.++.+.|||.+++.+...|+.++|++-..      .++.++..|. +.+..+.+||++++|++++.|.+
T Consensus       160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~-~~il~C~lSPd~k~lat~ssdkt  238 (311)
T KOG0315|consen  160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN-GHILRCLLSPDVKYLATCSSDKT  238 (311)
T ss_pred             cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc-ceEEEEEECCCCcEEEeecCCce
Confidence            776554  45899999999999999999999999998654      3555666776 88999999999999999999999


Q ss_pred             EEEEEcCCc-eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEe
Q 010470          418 HNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS  491 (510)
Q Consensus       418 i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  491 (510)
                      ++||+..+. +....+.++...+    ..++||.||.||++|+.|+.+++|++..++.+..+.+|..+..+++..
T Consensus       239 v~iwn~~~~~kle~~l~gh~rWv----Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  239 VKIWNTDDFFKLELVLTGHQRWV----WDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EEEEecCCceeeEEEeecCCceE----EeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999987 4444555554443    348899999999999999999999999999999999998887777764

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.8e-41  Score=315.39  Aligned_cols=285  Identities=23%  Similarity=0.423  Sum_probs=253.5

Q ss_pred             ccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-------------------------------
Q 010470          210 ESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-------------------------------  258 (510)
Q Consensus       210 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------  258 (510)
                      ...+|..|..++..-...++|..|++|+.+||.|..|..|++|.+...+                               
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~  442 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG  442 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence            4567888888888878899999999999999999999999999986321                               


Q ss_pred             ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      ...++.+|.++|..+.|+|+.++|++++.|+++++|.+.+..++-.+.+|..+|+++.|+| .+.+|+|+|.|++-++|.
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWS  521 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeee
Confidence            1234679999999999999999999999999999999999999999999999999999999 899999999999999999


Q ss_pred             CCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCc
Q 010470          339 LHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL  417 (510)
Q Consensus       339 ~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  417 (510)
                      .....+.+.+.+| +.+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.+|. ++|.+++|||+|++|++|+.||.
T Consensus       522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~ed~~  600 (707)
T KOG0263|consen  522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK-GPVTALAFSPCGRYLASGDEDGL  600 (707)
T ss_pred             cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-CceEEEEEcCCCceEeecccCCc
Confidence            9999999999887 569999999999999999999999999999999999999987 99999999999999999999999


Q ss_pred             EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc------------------------
Q 010470          418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD------------------------  473 (510)
Q Consensus       418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------------------------  473 (510)
                      |.+||+.++..+..+.+|.+.+.+    +.||.+|..||+|+.|.+|++||+..-.                        
T Consensus       601 I~iWDl~~~~~v~~l~~Ht~ti~S----lsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (707)
T KOG0263|consen  601 IKIWDLANGSLVKQLKGHTGTIYS----LSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSL  676 (707)
T ss_pred             EEEEEcCCCcchhhhhcccCceeE----EEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcc
Confidence            999999999999999999666555    9999999999999999999999975421                        


Q ss_pred             eeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          474 IVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       474 ~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      .+.++.....+|.++.|......|++|
T Consensus       677 llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  677 LLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             eeeeeeecCceEEEEEEeccceeEEec
Confidence            233344455688888888765444444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.9e-40  Score=291.09  Aligned_cols=292  Identities=21%  Similarity=0.362  Sum_probs=258.0

Q ss_pred             ccCCCccceeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCC--ccee--cc----------cccccceeEEE
Q 010470          210 ESTVPSTCKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTG--SLSS--TL----------YGCLGSVLDLA  274 (510)
Q Consensus       210 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~--~~~~--~~----------~~~~~~v~~~~  274 (510)
                      ...+|......+. |..+|.+++|+|-.. .+++|+.|-..++|++...  ....  .+          ......|++++
T Consensus       164 ~~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~  242 (524)
T KOG0273|consen  164 GVEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLD  242 (524)
T ss_pred             cccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEE
Confidence            4456666667777 999999999999766 8999999999999998641  1110  01          12246899999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCce
Q 010470          275 ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC  354 (510)
Q Consensus       275 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i  354 (510)
                      |+.+|..|++|+.||.+++|+. +|..+.++..|.++|.++.|+. .+++|++++.||++.+||..++...+.+..++.+
T Consensus       243 Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~  320 (524)
T KOG0273|consen  243 WNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP  320 (524)
T ss_pred             ecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence            9999999999999999999995 5888899999999999999998 8999999999999999999999999999998876


Q ss_pred             -eEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470          355 -NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       355 -~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  433 (510)
                       ..+.|- +...|++++.||.|+++.+....++.++.+|+ ++|.++.|+|.|.+|++++.|++++||..........+.
T Consensus       321 ~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~-g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~  398 (524)
T KOG0273|consen  321 ALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH-GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ  398 (524)
T ss_pred             ccceEEe-cCceEeecCCCceEEEEEecCCCcceeeeccc-CceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence             778886 55678899999999999999999999999987 999999999999999999999999999998888888888


Q ss_pred             cCCCeeecCceeEEEcCCC---------CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          434 ATGNRVASNWSRSCISPDE---------SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       434 ~~~~~~~~~~~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                      .|...+..    +.|+|.|         ..+++++.|++|++||+..+.++..|..|..+|.+++|+|+|.++++|+.||
T Consensus       399 ~Hskei~t----~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg  474 (524)
T KOG0273|consen  399 AHSKEIYT----IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG  474 (524)
T ss_pred             hhccceee----EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence            88776665    6777764         4689999999999999999999999999999999999999999999999999


Q ss_pred             eEEEcC
Q 010470          505 VVCVWT  510 (510)
Q Consensus       505 ~i~iwd  510 (510)
                      .|.+|+
T Consensus       475 ~V~iws  480 (524)
T KOG0273|consen  475 CVHIWS  480 (524)
T ss_pred             eeEecc
Confidence            999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-39  Score=290.25  Aligned_cols=307  Identities=23%  Similarity=0.391  Sum_probs=251.9

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc---c
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY---G  265 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~  265 (510)
                      +++++.|+.+.+++         -.|++...+++.|...|.|+.|+|||.++++++.||.|.+||-.+|+.+..+.   +
T Consensus       163 i~T~sdDn~v~ffe---------GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~a  233 (603)
T KOG0318|consen  163 IATGSDDNTVAFFE---------GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDA  233 (603)
T ss_pred             EEeccCCCeEEEee---------CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCC
Confidence            45666666666554         25788899999999999999999999999999999999999999999988887   8


Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE------------------------------------------
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH------------------------------------------  303 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------------------------------------  303 (510)
                      |.+.|.+++|+||++.+++++.|.+++|||+.+++++.                                          
T Consensus       234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~  313 (603)
T KOG0318|consen  234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL  313 (603)
T ss_pred             ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh
Confidence            99999999999999999999999999999998764333                                          


Q ss_pred             -eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-------------------------------eee----
Q 010470          304 -TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-------------------------------VNT----  347 (510)
Q Consensus       304 -~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------------------------~~~----  347 (510)
                       .+.+|...|+++..+| ++.+|++|+.||.|.-||..+|..                               ++.    
T Consensus       314 ~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~  392 (603)
T KOG0318|consen  314 KVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK  392 (603)
T ss_pred             heecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence             3568999999999999 789999999999999999754420                               000    


Q ss_pred             --------------------------------------ee---------ecCceeEEEEcCCCCEEEEecCCCcEEEEEC
Q 010470          348 --------------------------------------II---------FHSNCNALAFSMDGQTIFSGHIDGNLRLWDI  380 (510)
Q Consensus       348 --------------------------------------~~---------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~  380 (510)
                                                            +.         ....+.+++++|++..+++|+.||+|++|.+
T Consensus       393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl  472 (603)
T KOG0318|consen  393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL  472 (603)
T ss_pred             cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEe
Confidence                                                  00         0012467889999999999999999999999


Q ss_pred             CCCceeee-ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE-eecCCCeeecCceeEEEcCCCCEEEEE
Q 010470          381 QTGKLLSE-VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS-LRATGNRVASNWSRSCISPDESYVAAG  458 (510)
Q Consensus       381 ~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~  458 (510)
                      ..+..... ....+.++|++++||||+.+|+++...+.+.+||..+.+.... +..|...    +.+++|+|+..++|+|
T Consensus       473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak----I~~~aWsP~n~~vATG  548 (603)
T KOG0318|consen  473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK----INCVAWSPNNKLVATG  548 (603)
T ss_pred             cCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee----EEEEEeCCCceEEEec
Confidence            76553322 2233349999999999999999999999999999998776322 2224444    4559999999999999


Q ss_pred             cCCCeEEEEeCCCcc-eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          459 SADGSVYIWSISKAD-IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       459 ~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +-|-.|.||++.... .+.....|...|+.+.|-. ...|++.|.|..|++|+
T Consensus       549 SlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~  600 (603)
T KOG0318|consen  549 SLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWN  600 (603)
T ss_pred             cccceEEEEEccChhhheEeccccccCceeEEEec-CceEEeccCcceeEEec
Confidence            999999999998743 3444456998999999975 45799999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.3e-40  Score=288.58  Aligned_cols=314  Identities=23%  Similarity=0.397  Sum_probs=270.0

Q ss_pred             HhhhhcCCceEEeccccccc-ccccCCCccceeecccc----ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec
Q 010470          188 KLAKQQVDGVVRRSEEGAEF-FAESTVPSTCKHKINAH----EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST  262 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  262 (510)
                      .++.++.+-..+.|...... ........+....+-++    +..|++++|+.+|..||+|+.||.++||+.. |..+.+
T Consensus       193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~t  271 (524)
T KOG0273|consen  193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIST  271 (524)
T ss_pred             hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhh
Confidence            55666677777777643210 01111111111112223    3479999999999999999999999999986 777889


Q ss_pred             ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470          263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~  342 (510)
                      +..|.++|.++.|+..|+||++++.|+++.+||..++...+.+..|..+-..+.|-  +..-|++++.||.|+|+-+...
T Consensus       272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~  349 (524)
T KOG0273|consen  272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED  349 (524)
T ss_pred             hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCC
Confidence            99999999999999999999999999999999999999999999998887788886  4678999999999999999999


Q ss_pred             eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCC---------CEEEEE
Q 010470          343 YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG---------NIILTS  412 (510)
Q Consensus       343 ~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~---------~~l~~~  412 (510)
                      .++.++.+| ..|+++.|+|.|..|++++.|++++||..........+..|. ..|..+.|+|.|         ..++++
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sa  428 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASA  428 (524)
T ss_pred             CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEe
Confidence            999999877 459999999999999999999999999998888899999887 889999999965         368999


Q ss_pred             ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470          413 GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG  492 (510)
Q Consensus       413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  492 (510)
                      +.|++|++||+..+.+++.|..|..++..    ++|+|+|+|+++|+.||.|.+|++++++.++.+.+ .+.|..++|+.
T Consensus       429 s~dstV~lwdv~~gv~i~~f~kH~~pVys----vafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~  503 (524)
T KOG0273|consen  429 SFDSTVKLWDVESGVPIHTLMKHQEPVYS----VAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNA  503 (524)
T ss_pred             ecCCeEEEEEccCCceeEeeccCCCceEE----EEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcC
Confidence            99999999999999999999888888876    99999999999999999999999999999999885 45699999999


Q ss_pred             CCCcEEEeeCCCeEEEcC
Q 010470          493 LGKPLASADKNGVVCVWT  510 (510)
Q Consensus       493 ~~~~l~s~~~dg~i~iwd  510 (510)
                      +|.+|..+-.||.+++-|
T Consensus       504 ~G~kl~~~~sd~~vcvld  521 (524)
T KOG0273|consen  504 AGDKLGACASDGSVCVLD  521 (524)
T ss_pred             CCCEEEEEecCCCceEEE
Confidence            999999999999988753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-40  Score=271.01  Aligned_cols=277  Identities=24%  Similarity=0.370  Sum_probs=235.0

Q ss_pred             hHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc
Q 010470          186 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG  265 (510)
Q Consensus       186 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  265 (510)
                      .+.+...+.|..+..|.....    ...-..+.+.|+||...|..+..++||++.++++.|+.+++||+.+++....|.+
T Consensus        28 ~~~l~sasrDk~ii~W~L~~d----d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G  103 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSD----DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG  103 (315)
T ss_pred             CceEEEcccceEEEEEEeccC----ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe
Confidence            344566778888888886553    2333457889999999999999999999999999999999999999999999999


Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC--CCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCC
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH--TDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~  342 (510)
                      |...|.+++|+||++.+++|+.|.+|.+|+.. +.+..++..+  .+.|.|+.|+|.. ..+|++++.|++|++||+++-
T Consensus       104 H~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~  182 (315)
T KOG0279|consen  104 HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC  182 (315)
T ss_pred             cCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence            99999999999999999999999999999976 4455555433  7899999999953 779999999999999999998


Q ss_pred             eEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          343 YCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       343 ~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      +....+.++.. ++.++++|||..+++|+.||.+.+||++.++.+..+...  ..|.+++|+|+...|+.+. +..|+||
T Consensus       183 ~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~--~~v~sl~fspnrywL~~at-~~sIkIw  259 (315)
T KOG0279|consen  183 QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF--DIVNSLCFSPNRYWLCAAT-ATSIKIW  259 (315)
T ss_pred             chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC--CeEeeEEecCCceeEeecc-CCceEEE
Confidence            88888887754 899999999999999999999999999999998877766  7999999999876666554 4569999


Q ss_pred             EcCCceeeeEeecCCCee-----ecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          422 DIRSLEVCGSLRATGNRV-----ASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      |+.+...+..+.......     ......++|++||..|++|..|+.|++|.+.
T Consensus       260 dl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  260 DLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            999988877765433222     1122447899999999999999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.5e-39  Score=296.73  Aligned_cols=286  Identities=36%  Similarity=0.642  Sum_probs=260.1

Q ss_pred             eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      .++.+|.++|++++|+|++++|++++.||.|.+|++.++.....+..|...+..+.|+|+++++++++.+|.|++|++.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            46779999999999999999999999999999999998888888889999999999999999999999999999999998


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEE
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRL  377 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i  377 (510)
                      ++....+..|...+.++.|+| ++.++++++.+|.|.+||+.++.....+..+ ..+.+++|+|++.++++++.+|.|++
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence            888888999999999999999 5778888888999999999988888887744 46999999999999999988999999


Q ss_pred             EECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEE
Q 010470          378 WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA  457 (510)
Q Consensus       378 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  457 (510)
                      ||+++++....+..+. ..+.++.|+|+++.+++++.++.+.+||++++.....+..+...    +..++|+|++.++++
T Consensus       162 ~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~  236 (289)
T cd00200         162 WDLRTGKCVATLTGHT-GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG----VNSVAFSPDGYLLAS  236 (289)
T ss_pred             EEccccccceeEecCc-cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc----eEEEEEcCCCcEEEE
Confidence            9999888888887665 78999999999999999999999999999988887777555543    344899999999999


Q ss_pred             EcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          458 GSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       458 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++.||.|++|++.++.....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus       237 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            98899999999999999999989999999999999999999999999999997

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.8e-39  Score=311.94  Aligned_cols=291  Identities=30%  Similarity=0.513  Sum_probs=263.9

Q ss_pred             eeecccc-ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470          218 KHKINAH-EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       218 ~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  294 (510)
                      ...+.+| ...|.|+.|+++|+.+++++.|+.+++|+..+++  ....+.+|...|.+++|+|++.++++++.|++|+||
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            5556555 7789999999999999999999999999998777  777788999999999999999999999999999999


Q ss_pred             Ec-CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCC
Q 010470          295 DV-NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHID  372 (510)
Q Consensus       295 d~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d  372 (510)
                      |+ ..+..++++.+|...|++++|+| .++++++|+.|++|++||+++++++..+..|. .|++++|+++|++|++++.|
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            99 55589999999999999999999 56999999999999999999999999999886 59999999999999999999


Q ss_pred             CcEEEEECCCCc--eeeeecccccc-cEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470          373 GNLRLWDIQTGK--LLSEVAAHSLA-AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       373 g~i~i~d~~~~~--~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                      |.|++||+.++.  +...+..+... +++++.|+|++.++++++.|+.+++||+..+.....+..+.... ..+.....+
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~-~~~~~~~~~  388 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV-RCIFSPTLS  388 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc-eeEeccccc
Confidence            999999999998  55666666544 79999999999999999999999999999999999988887763 223334568


Q ss_pred             CCCCEEEEEcCCCeEEEEeCCCcceeeccccc-CcCEEEEEEeCCCCcEEEee--CCCeEEEcC
Q 010470          450 PDESYVAAGSADGSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGKPLASAD--KNGVVCVWT  510 (510)
Q Consensus       450 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd  510 (510)
                      +.+.++++|+.|+.|++|++.++..+..+.+| ...+..++|+|..+++++++  .|+.+++|.
T Consensus       389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             CCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            89999999999999999999999999999999 89999999999999999988  789999994

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=2.9e-38  Score=275.69  Aligned_cols=391  Identities=19%  Similarity=0.307  Sum_probs=302.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HHHHhhhH----
Q 010470           94 TSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKML---VDR---WMLQKMQD----  163 (510)
Q Consensus        94 ~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~----  163 (510)
                      -+|+++|+.+++|+++..++.+++++.+.+|.+|+++.++.+..+....-...++....   .+.   .+.+.+..    
T Consensus        88 F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav~~~~~~s~~~va~ge~~d~~g~s  167 (506)
T KOG0289|consen   88 FTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAVPSLAQSSVVGVAAGESEDQPGLS  167 (506)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccchhhhhcCCccccccCC
Confidence            34888899999999999999999999999999999999998887776543332111000   000   00000000    


Q ss_pred             HHHHHHHHHHHHHHHHHhhhc---chHHhhhhcCCceEEecccccccccccCCCccceeeccc-------cccceEEEEE
Q 010470          164 AERLNEANALYEDMIDRLKAS---GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINA-------HEGGCASILF  233 (510)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~  233 (510)
                      .+..+........+....+..   ..+.+++.  |.                  ..+......       ...+++++..
T Consensus       168 ~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~--d~------------------~~~~~q~ash~gLH~t~~pgi~ald~  227 (506)
T KOG0289|consen  168 PEIIQKLEDKAQVLSQERKKRGKKLPEKLATT--DE------------------LSCLLQVASHTGLHSTSTPGITALDI  227 (506)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCcccccH--HH------------------HHHHHhcCCCcceeccCCCCeeEEee
Confidence            000111111111111111100   00000000  00                  001111111       2236888888


Q ss_pred             ecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceE
Q 010470          234 EYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVC  313 (510)
Q Consensus       234 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  313 (510)
                      .|....+.+|+.|..+.++|..+++.+..+.||.-.|+.+.|+|+...+++++.|..|+||.............|..+|+
T Consensus       228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~  307 (506)
T KOG0289|consen  228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT  307 (506)
T ss_pred             cCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccce
Confidence            88778999999999999999999999999999999999999999999999999999999999988887778888999999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC---ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 010470          314 AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS---NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA  390 (510)
Q Consensus       314 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  390 (510)
                      .+..+| .+.||++++.||+..+.|++++.++.......   .+++.+|+|||..|.+|..||.|+|||+.++..+..|.
T Consensus       308 ~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp  386 (506)
T KOG0289|consen  308 GLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP  386 (506)
T ss_pred             eeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence            999999 89999999999999999999999888877642   38999999999999999999999999999999999999


Q ss_pred             ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          391 AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       391 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      +|. ++|..|+|+.+|.+|++++.|+.|++||+|+.+...++......   .+..++|.+.|.+|+.++.|=.|++++-.
T Consensus       387 ght-~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~---~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~  462 (506)
T KOG0289|consen  387 GHT-GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK---EVNSLSFDQSGTYLGIAGSDLQVYICKKK  462 (506)
T ss_pred             CCC-CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc---cceeEEEcCCCCeEEeecceeEEEEEecc
Confidence            977 99999999999999999999999999999998887777655543   23458999999999999887667776633


Q ss_pred             --CcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          471 --KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       471 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                        +...+..+..|.+..+++.|..+..+++++|.|..++++
T Consensus       463 ~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  463 TKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             cccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence              467778888899999999999999999999999998886

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.3e-38  Score=270.60  Aligned_cols=287  Identities=18%  Similarity=0.302  Sum_probs=248.8

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      ...+|..|.++|.+++.+|+.++++|||.|..-.+|+..++.....+.+|...|+++.|+.+|.+|++|+.+|.|+||..
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcE
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                      .++.....+....+.+.=+.|+| ...+|+.|+.||.+.+|.+.++...+.+.++ .++++-.|.|+|+.+++|..||+|
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti  214 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI  214 (399)
T ss_pred             ccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence            99999888876777888899999 8999999999999999999987777777766 569999999999999999999999


Q ss_pred             EEEECCCCceeeeeccccccc-----------------------------------------------------EEEEEE
Q 010470          376 RLWDIQTGKLLSEVAAHSLAA-----------------------------------------------------VTSISL  402 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~-----------------------------------------------------i~~i~~  402 (510)
                      ++||+.++.++..+.......                                                     |.++.+
T Consensus       215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~  294 (399)
T KOG0296|consen  215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS  294 (399)
T ss_pred             EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence            999999998887765211011                                                     111222


Q ss_pred             cCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccC
Q 010470          403 SRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT  482 (510)
Q Consensus       403 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  482 (510)
                      +..=.+.++|+-||+|.|||+......+.+.....     +..+.|-+ ..+|++++.||.|+.||.++|.++.++.+|.
T Consensus       295 ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~  368 (399)
T KOG0296|consen  295 SSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQ  368 (399)
T ss_pred             ccccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCc
Confidence            22234567888899999999887776666554443     33478888 7899999999999999999999999999999


Q ss_pred             cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          483 APVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       483 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+|.+++++|+++.++|+|.|++.+||+
T Consensus       369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  369 MGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             hheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            9999999999999999999999999984

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.8e-37  Score=317.25  Aligned_cols=283  Identities=19%  Similarity=0.335  Sum_probs=239.5

Q ss_pred             ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC----c----ceecccccccceeEEEEecC-CCEEEEEeCCCeE
Q 010470          221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG----S----LSSTLYGCLGSVLDLAITHD-NRSVIAASSSNNL  291 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i  291 (510)
                      +.+|.+.|.+++|+|+|++|++|+.|+.|+||+..+.    .    ....+ .+...+.+++|+|. +.+|++++.||.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4569999999999999999999999999999997542    1    11222 23567899999874 7899999999999


Q ss_pred             EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEc-CCCCEEEEec
Q 010470          292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFS-MDGQTIFSGH  370 (510)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~  370 (510)
                      ++||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.||.|++||++++.++..+..+..+.++.|+ ++|.+|++|+
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence            999999999999999999999999999867889999999999999999999998888877789999995 5799999999


Q ss_pred             CCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc------eeeeEeecCCCeeecCc
Q 010470          371 IDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL------EVCGSLRATGNRVASNW  443 (510)
Q Consensus       371 ~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~  443 (510)
                      .||.|++||+++++ ++..+..|. ..|.++.|. ++.+|++++.|+.|++||++..      ..+..+.++...+.   
T Consensus       638 ~dg~I~iwD~~~~~~~~~~~~~h~-~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~---  712 (793)
T PLN00181        638 ADHKVYYYDLRNPKLPLCTMIGHS-KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN---  712 (793)
T ss_pred             CCCeEEEEECCCCCccceEecCCC-CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee---
Confidence            99999999998876 455666665 889999997 6889999999999999999743      45566666655443   


Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc-------------cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          444 SRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-------------KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       444 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                       .++|+|++.+|++|+.||.|++|+.....++..+             ..|...|.+++|+|++..|++|+.||.|+||+
T Consensus       713 -~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        713 -FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             -EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence             3889999999999999999999997655433221             23456799999999999999999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.2e-38  Score=291.89  Aligned_cols=289  Identities=21%  Similarity=0.370  Sum_probs=257.2

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCC-CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQD-KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      ..+++.+.--..+|..++|+..|+.||.|+.. |.+-||++.+...+....+|...+++++++|||+++++|+.||.|+|
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            45778888888899999999999999998865 89999999999998889999999999999999999999999999999


Q ss_pred             EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecC
Q 010470          294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~  371 (510)
                      ||..++-|..+|..|+..|+.+.|+. .++.+++++-||+|+.||+...+..+++..+.+  ..|++..|.|..+++|+.
T Consensus       377 Wn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~  455 (893)
T KOG0291|consen  377 WNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ  455 (893)
T ss_pred             EeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence            99999999999999999999999998 899999999999999999999999999988866  689999999999999988


Q ss_pred             CC-cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc-eeeeEeecCCCeeecCceeEEEc
Q 010470          372 DG-NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       372 dg-~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                      |. .|++|++.+|+.+..+.+|. ++|.+++|+|.|..|++++.|.+|++||+-.. ..+.++..     ...+..++|+
T Consensus       456 d~F~IfvWS~qTGqllDiLsGHE-gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i-----~sdvl~vsfr  529 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILSGHE-GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI-----RSDVLAVSFR  529 (893)
T ss_pred             ceEEEEEEEeecCeeeehhcCCC-CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee-----ccceeEEEEc
Confidence            76 49999999999999999998 99999999999999999999999999998643 23333333     3334458999


Q ss_pred             CCCCEEEEEcCCCeEEEEeCCCcceeecccc--------------------cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          450 PDESYVAAGSADGSVYIWSISKADIVRTLKE--------------------HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       450 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      |+|+.|++++-||.|.+||+..+..+..+.+                    .....+.+++++||..+++||....|++|
T Consensus       530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY  609 (893)
T KOG0291|consen  530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY  609 (893)
T ss_pred             CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence            9999999999999999999887665544321                    23468999999999999999999999998


Q ss_pred             C
Q 010470          510 T  510 (510)
Q Consensus       510 d  510 (510)
                      +
T Consensus       610 ~  610 (893)
T KOG0291|consen  610 D  610 (893)
T ss_pred             E
Confidence            6

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5e-37  Score=285.40  Aligned_cols=308  Identities=24%  Similarity=0.400  Sum_probs=252.2

Q ss_pred             eEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecccccccceeEEE
Q 010470          197 VVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLA  274 (510)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~  274 (510)
                      .+.+|......- ....|+....++.||...|+++.|+.|.++|++||.|-++++|+++..+.  ...+.+|.++|.++-
T Consensus       118 ~lqiw~~P~~~~-~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vvacf  196 (893)
T KOG0291|consen  118 LLQIWHAPGEIK-NEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACF  196 (893)
T ss_pred             eeEEEecCcchh-cccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEE
Confidence            445565443222 25578888899999999999999999999999999999999999987665  566789999999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCC-----------------------CCe-----------eEeecCCCCceEEEEEecC
Q 010470          275 ITHDNRSVIAASSSNNLYVWDVNS-----------------------GRV-----------RHTLTGHTDKVCAVDVSKI  320 (510)
Q Consensus       275 ~~~~~~~l~~~~~d~~i~iwd~~~-----------------------~~~-----------~~~~~~~~~~v~~i~~~~~  320 (510)
                      |..+...+++.+.||.+.+|....                       ++.           .+-+......|++.+|++ 
T Consensus       197 F~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-  275 (893)
T KOG0291|consen  197 FGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-  275 (893)
T ss_pred             eccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-
Confidence            999999999999999999998761                       100           000111124455555554 


Q ss_pred             CCCEEEEEeCC-------------------------------------------CcEEEEECCCCeEeeeeeec-CceeE
Q 010470          321 SSRHVVSAAYD-------------------------------------------RTLKVWDLHKGYCVNTIIFH-SNCNA  356 (510)
Q Consensus       321 ~~~~l~s~~~d-------------------------------------------g~i~iwd~~~~~~~~~~~~~-~~i~~  356 (510)
                      ..+.+++|-..                                           |.+.||+..+...+....+| ..+++
T Consensus       276 ~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~  355 (893)
T KOG0291|consen  276 GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITS  355 (893)
T ss_pred             CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceee
Confidence            44444444333                                           45556666555555555555 45999


Q ss_pred             EEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470          357 LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG  436 (510)
Q Consensus       357 i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  436 (510)
                      ++++|||+++++|+.||.|+|||..+|-+..+|..|. +.|+.+.|+..|+.+++++-||+|+.||+.......++..+.
T Consensus       356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt-s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~  434 (893)
T KOG0291|consen  356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT-SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE  434 (893)
T ss_pred             EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC-CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC
Confidence            9999999999999999999999999999999999998 999999999999999999999999999999988888887655


Q ss_pred             CeeecCceeEEEcCCCCEEEEEcCCC-eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          437 NRVASNWSRSCISPDESYVAAGSADG-SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       437 ~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..   .+.+++..|.|..+++|+.|. .|+||++.+|+.+..+.+|.+||.+++|+|+|..|++++.|.+|++||
T Consensus       435 p~---QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  435 PI---QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             ce---eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence            43   345788999999999999886 599999999999999999999999999999999999999999999997

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-36  Score=249.43  Aligned_cols=282  Identities=20%  Similarity=0.381  Sum_probs=233.3

Q ss_pred             ceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCc---ceecc-cccccceeEEEEecCCCEEEEEeCCCeE
Q 010470          217 CKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTGS---LSSTL-YGCLGSVLDLAITHDNRSVIAASSSNNL  291 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i  291 (510)
                      ..+++.+|.+.|..++|+|- |..||+||.|+.|++|+...+.   +...+ .+|...|.+++|+|.|++|++++.|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            56788999999999999998 8899999999999999998532   22223 3799999999999999999999999999


Q ss_pred             EEEEcCCC--CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC---eEeeeeeec-CceeEEEEcCCCCE
Q 010470          292 YVWDVNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNTIIFH-SNCNALAFSMDGQT  365 (510)
Q Consensus       292 ~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~i~~i~~~~~~~~  365 (510)
                      .||.-..+  +++.++.||.+.|.|++|++ ++++|++++.|.+|-||.+..+   .+...+..| ..|..+.|+|....
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence            99987654  47889999999999999999 9999999999999999998744   456666666 45999999999999


Q ss_pred             EEEecCCCcEEEEECCC---CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecC
Q 010470          366 IFSGHIDGNLRLWDIQT---GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN  442 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  442 (510)
                      |++++.|.+|++|+-..   -.++.++..++ ..|.+++|+|.|..|++++.|++++||-..+.-.    ..+...+.  
T Consensus       165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y--  237 (312)
T KOG0645|consen  165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALY--  237 (312)
T ss_pred             eEEeccCCeEEEEeecCCCCeeEEEEecCcc-ceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceE--
Confidence            99999999999998662   35778888887 7999999999999999999999999998652110    11222222  


Q ss_pred             ceeEEEcCCCCEEEEEcCCCeEEEEeCCCc------ceee-cccccCcCEEEEEEeCC-CCcEEEeeCCCeEEEcC
Q 010470          443 WSRSCISPDESYVAAGSADGSVYIWSISKA------DIVR-TLKEHTAPVLSCSWSGL-GKPLASADKNGVVCVWT  510 (510)
Q Consensus       443 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~-~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd  510 (510)
                        .+.|.  ...|++++.|+.|++|.-...      +.+. .-..|...|+++.|+|. .+.|++|+.||.|++|.
T Consensus       238 --~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  238 --DVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             --eeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence              25565  568999999999999975542      1222 22458899999999995 67899999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.5e-38  Score=294.83  Aligned_cols=242  Identities=24%  Similarity=0.404  Sum_probs=224.6

Q ss_pred             ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC-------------------------------CeeEeecCCCCc
Q 010470          263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-------------------------------RVRHTLTGHTDK  311 (510)
Q Consensus       263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------------------------------~~~~~~~~~~~~  311 (510)
                      +......++|..|++|++.++.|..|..|++|.+...                               ....++.+|.++
T Consensus       374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP  453 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP  453 (707)
T ss_pred             EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence            3444567899999999999999999999999998631                               123447799999


Q ss_pred             eEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 010470          312 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA  390 (510)
Q Consensus       312 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  390 (510)
                      |.+..|+| +.++|++++.|+++++|.+.+..++-.+.+| .+|.++.|+|.|-+|++++.|++-++|......+.+.+.
T Consensus       454 Vyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa  532 (707)
T KOG0263|consen  454 VYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA  532 (707)
T ss_pred             eeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc
Confidence            99999999 8999999999999999999999999888877 569999999999999999999999999999999999998


Q ss_pred             ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          391 AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       391 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      +|- +.|.|+.|+|+..|+++|+.|.++++||..++..++.|.+|..++..    ++|||+|++|++|+.||.|.+||+.
T Consensus       533 ghl-sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~a----l~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  533 GHL-SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTA----LAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             ccc-cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEE----EEEcCCCceEeecccCCcEEEEEcC
Confidence            887 99999999999999999999999999999999999999998887766    9999999999999999999999999


Q ss_pred             CcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          471 KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +++++..+.+|.+.|.++.|+.+|..||+||.|.+|++||
T Consensus       608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence            9999999999999999999999999999999999999997

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-37  Score=261.75  Aligned_cols=297  Identities=23%  Similarity=0.420  Sum_probs=260.3

Q ss_pred             cCCCccceeecc-ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec--------ccccccceeEEEEecCCCE
Q 010470          211 STVPSTCKHKIN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--------LYGCLGSVLDLAITHDNRS  281 (510)
Q Consensus       211 ~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~  281 (510)
                      ...|....+.++ |...-+.|..|||||++|++|+.||.|.+||..+|+....        +.-+..+|.|++|+.|...
T Consensus       198 e~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM  277 (508)
T KOG0275|consen  198 ERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM  277 (508)
T ss_pred             hhchHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH
Confidence            345555554444 4566799999999999999999999999999999987543        3457889999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCCCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEE
Q 010470          282 VIAASSSNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAF  359 (510)
Q Consensus       282 l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~  359 (510)
                      +++|+.||.|++|.+.+|.+++.|. .|+..|+|+.|+. ++..+++++.|.++++.-+.+|+++..+.+|+. ++...|
T Consensus       278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f  356 (508)
T KOG0275|consen  278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF  356 (508)
T ss_pred             hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence            9999999999999999999999997 8999999999998 888999999999999999999999999999865 899999


Q ss_pred             cCCCCEEEEecCCCcEEEEECCCCceeeeecccc-cccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCC
Q 010470          360 SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGN  437 (510)
Q Consensus       360 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  437 (510)
                      .++|..+++++.||+|++|+.++..++.++.... ..+|.++-.-|. ...++++...++++|.++. ++.+..+.... 
T Consensus       357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk-  434 (508)
T KOG0275|consen  357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK-  434 (508)
T ss_pred             cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC-
Confidence            9999999999999999999999999998887543 357888887774 5589999999999999985 56666665432 


Q ss_pred             eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          438 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       438 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .-...+.+.++||.|.++++.+.|+.++.|.+.+|++..++.-|...|.+++-+|..+.|++-+.||.+++|.
T Consensus       435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            2334455678999999999999999999999999999999999999999999999999999999999999994

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-36  Score=248.58  Aligned_cols=283  Identities=23%  Similarity=0.351  Sum_probs=239.9

Q ss_pred             eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470          220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG  299 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  299 (510)
                      .+.||..+++.+.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|+..+.+.+++++|+.|.++++||+.+|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46799999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             CeeEeecCCCCceEEEEEecCCCCEEEEEeC-----CCcEEEEECC-------CCeEeeeeeec-CceeEEEEcCCCCEE
Q 010470          300 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-----DRTLKVWDLH-------KGYCVNTIIFH-SNCNALAFSMDGQTI  366 (510)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~-~~i~~i~~~~~~~~l  366 (510)
                      +.+..++ ...+|..+.|++ ++++++.+..     .+.|.++|++       +..+...+..+ +.++.+-|.|-+.+|
T Consensus        85 k~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 KQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             cEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            9999988 568899999999 7777666543     4689999998       34455555544 569999999999999


Q ss_pred             EEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeE
Q 010470          367 FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS  446 (510)
Q Consensus       367 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  446 (510)
                      ++|..+|.|.+||+++|..+......+...|+.++++|+..++++++.|.+-++||.++...+.++....     ++++.
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~-----PvN~a  237 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER-----PVNTA  237 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc-----cccce
Confidence            9999999999999999866555543334899999999999999999999999999999999988886543     33448


Q ss_pred             EEcCCCCEEEEEcCCCe--EE------------EEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          447 CISPDESYVAAGSADGS--VY------------IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       447 ~~s~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      +++|-...++.|+...-  |.            +|++-..+.+..+++|-+||++++|+|+|+..++|+.||.|++.
T Consensus       238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence            89998888777664322  22            22222224566678999999999999999999999999999873

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.9e-37  Score=287.71  Aligned_cols=310  Identities=26%  Similarity=0.430  Sum_probs=260.4

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCC--EEEEeeCCCeEEEEeCCCCcc-eecc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA--RLISGGQDKSIKLWDTNTGSL-SSTL  263 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~-~~~~  263 (510)
                      ..+++++.|+.+++|+...         ..+.+.|+||.|.|.++.|+|+-.  .|++|..|+.+++||+.+... +..+
T Consensus       118 ~LlAtggaD~~v~VWdi~~---------~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~  188 (775)
T KOG0319|consen  118 TLLATGGADGRVKVWDIKN---------GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM  188 (775)
T ss_pred             ceEEeccccceEEEEEeeC---------CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH
Confidence            5678899999999999554         358999999999999999999765  489999999999999986554 8888


Q ss_pred             cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe------------------------------------------
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV------------------------------------------  301 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------------------------------------  301 (510)
                      ..|.+.|++++|++|+..+++++.|..+.+||+.+.+.                                          
T Consensus       189 ~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e  268 (775)
T KOG0319|consen  189 ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE  268 (775)
T ss_pred             HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc
Confidence            89999999999999888888888888888888742100                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 010470          302 --------------------------------------------------------------------------------  301 (510)
Q Consensus       302 --------------------------------------------------------------------------------  301 (510)
                                                                                                      
T Consensus       269 s~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~l  348 (775)
T KOG0319|consen  269 SGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPEL  348 (775)
T ss_pred             cchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCce
Confidence                                                                                            


Q ss_pred             ---------eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe----Eeeeeeec-CceeEEEEcCCC-CEE
Q 010470          302 ---------RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY----CVNTIIFH-SNCNALAFSMDG-QTI  366 (510)
Q Consensus       302 ---------~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-~~i~~i~~~~~~-~~l  366 (510)
                               ...+.+|...|.++.... .+.+|++|+.|.++++|-++++.    ++....+| ..+.+++++..+ .+|
T Consensus       349 r~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff  427 (775)
T KOG0319|consen  349 RLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF  427 (775)
T ss_pred             EEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE
Confidence                     001457888888888544 56799999999999999885443    33333444 458889987644 578


Q ss_pred             EEecCCCcEEEEECCCCcee---eee-----cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470          367 FSGHIDGNLRLWDIQTGKLL---SEV-----AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR  438 (510)
Q Consensus       367 ~~~~~dg~i~i~d~~~~~~~---~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  438 (510)
                      ++++.|+++++|++...+..   ..+     ...|...|++++++|+..++++|+.|.+.+||++.......++.+|...
T Consensus       428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG  507 (775)
T KOG0319|consen  428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG  507 (775)
T ss_pred             EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc
Confidence            89999999999999762211   111     1223378999999999999999999999999999999999999999888


Q ss_pred             eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          439 VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       439 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +.+    +.|+|..+.++++|.|++|+||.+.++.+++++.||...|..+.|-.+|+.|++|+.||-|++|+
T Consensus       508 vw~----V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  508 VWC----VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             eEE----EEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence            765    99999999999999999999999999999999999999999999999999999999999999996

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.2e-37  Score=278.95  Aligned_cols=286  Identities=19%  Similarity=0.315  Sum_probs=265.5

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      ...++..|+..|.++.|+|....++++-.+|.|.|||.++...+.++.-..-+|.+..|-+..+.+++|+.|..|+||+.
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            44566779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeecCc-eeEEEEcC-CCCEEEEecCCC
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSN-CNALAFSM-DGQTIFSGHIDG  373 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~-i~~i~~~~-~~~~l~~~~~dg  373 (510)
                      ++++.++.|..|.+.|.+++++| ...+++++|.|-+|++||...+ .+.+++.+|.. |.+++|+| |.+.+++++-|+
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             ccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence            99999999999999999999999 7889999999999999999865 56778887765 99999999 778999999999


Q ss_pred             cEEEEECCCCceeeeecccccccEEEEEEcCCC--CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG--NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      +|++|.+.+..+..++.+|. ..|+|++|-+-|  .+|++|++|.+++|||..+..++.++.+|.+.+..    ++|+|.
T Consensus       164 TVKVWslgs~~~nfTl~gHe-kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~----v~fhp~  238 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGHE-KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF----VFFHPE  238 (794)
T ss_pred             cEEEEEcCCCCCceeeeccc-cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE----EEecCC
Confidence            99999999999999999887 899999998855  59999999999999999999999999999887765    899999


Q ss_pred             CCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          452 ESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      -.+|++|+.||+|+||+..+.+...++......|++++-.+.+..++.|.+.|.|.+
T Consensus       239 lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  239 LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            999999999999999999999999999888889999999998888999988888754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-35  Score=249.10  Aligned_cols=287  Identities=21%  Similarity=0.341  Sum_probs=249.2

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC--CCeEEEEE
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS--SNNLYVWD  295 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd  295 (510)
                      .+.|..-.+.|+++.|+++|.++++++.|.+++|||..+++.+.++..+.-.+..++|......++.++.  |.+|+..+
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            3445556778999999999999999999999999999999999999988889999999888888888876  88999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcE
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                      +.+++.++.|.||...|.+++.+| .+..+++++.|++|++||++..++...+..... ..++|+|.|-++|++.....|
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELI  164 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeE
Confidence            999999999999999999999999 669999999999999999998887776655543 468999999999999988899


Q ss_pred             EEEECCCC--ceeeeecc--cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          376 RLWDIQTG--KLLSEVAA--HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       376 ~i~d~~~~--~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      ++||+|+-  .+...+..  ......+.+.|+|+|++|+.++..+.+++.|.-+|....++..+......+ ...+|+||
T Consensus       165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftPd  243 (311)
T KOG1446|consen  165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP-LSATFTPD  243 (311)
T ss_pred             EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc-eeEEECCC
Confidence            99999863  33334332  233789999999999999999999999999999999999988777665433 33789999


Q ss_pred             CCEEEEEcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          452 ESYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      |++|++|+.||+|.+|++.++..+..+.+ +.+++.++.|+|.-.+++++  +..+.+|
T Consensus       244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw  300 (311)
T KOG1446|consen  244 SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFW  300 (311)
T ss_pred             CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEE
Confidence            99999999999999999999999999988 78999999999986666665  4566666

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=7.6e-38  Score=254.01  Aligned_cols=280  Identities=24%  Similarity=0.392  Sum_probs=252.8

Q ss_pred             eccccccceEEEEEec---CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          220 KINAHEGGCASILFEY---NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      +..||+.+|..++|||   +|-+|++++.||.-.+-+-++|.-+.++.+|.+.|++.+.+.+...-++++.|-+.++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            4578999999999985   8889999999999999999999999999999999999999999888899999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-Eeeeeeec-CceeEEEEcCCCCEEEEecCCCc
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFH-SNCNALAFSMDGQTIFSGHIDGN  374 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~  374 (510)
                      -+|..++.|. |..-|.+++|+. +.++|++|+.+..++|||++... +...+..+ +.|..+.|....+.|++.+.|++
T Consensus        89 ~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t  166 (334)
T KOG0278|consen   89 VTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT  166 (334)
T ss_pred             hhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence            9999999987 899999999998 89999999999999999997643 33444444 55999999998999999999999


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      |++||.+++..++.+...  .+|+++.++++|++|.++ ..+.|.+||..+...+..+..+.+..     +.+++|+...
T Consensus       167 VRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~-----SASL~P~k~~  238 (334)
T KOG0278|consen  167 VRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVE-----SASLHPKKEF  238 (334)
T ss_pred             eEEEEeccCcEEEEEecC--CCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccc-----cccccCCCce
Confidence            999999999999999887  799999999999987665 56689999999999888887665543     3678999999


Q ss_pred             EEEEcCCCeEEEEeCCCcceeecc-cccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          455 VAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      +++|+.|+.++.||..+++.+..+ ++|.++|.|+.|+|+|...++|+.||+|++|
T Consensus       239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence            999999999999999999988886 8899999999999999999999999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=5.6e-36  Score=244.80  Aligned_cols=277  Identities=19%  Similarity=0.291  Sum_probs=250.7

Q ss_pred             eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec--ccccccceeEEEEecC-CCEEEEEeCCCeEEEEE
Q 010470          219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--LYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWD  295 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd  295 (510)
                      ..+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+....  ..+|.+.|-.++|+|. ...+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            66789999999999999999999999999999999987765443  4589999999999875 56788999999999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcE
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                      ++.+++...+....+.+ -+.|+| ++.+++.++.|..|.+.|.++.+.+........++.++|+.++++++..+..|+|
T Consensus        94 ~r~~k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV  171 (313)
T ss_pred             eccCcEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence            99999999887655555 477999 8999999999999999999999998888888889999999888888888888999


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  455 (510)
                      .|......+++..+..|. ....||.|+|+|++|++|+.|..+.+||+...-+...+.....++..    +.||.||++|
T Consensus       172 ~ILsypsLkpv~si~AH~-snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRT----lSFS~dg~~l  246 (313)
T KOG1407|consen  172 EILSYPSLKPVQSIKAHP-SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRT----LSFSHDGRML  246 (313)
T ss_pred             EEEeccccccccccccCC-cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEE----EEeccCccee
Confidence            999999999999999998 89999999999999999999999999999988888888888777776    9999999999


Q ss_pred             EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          456 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       456 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      |+||.|..|-|-++.+|..+..++ +.++...++|+|...+|+.+++|
T Consensus       247 ASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  247 ASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            999999999999999999999887 78899999999999999887664

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-36  Score=279.66  Aligned_cols=289  Identities=21%  Similarity=0.355  Sum_probs=258.4

Q ss_pred             ccceeeccccccceEEEEEe-cCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          215 STCKHKINAHEGGCASILFE-YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      .+....+-|..+.|..|+|- |+.++|++++..+.+++|+..+..+. .+.+|...|.++....+|-+|++|+.|+++++
T Consensus       313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svil  391 (775)
T KOG0319|consen  313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL  391 (775)
T ss_pred             cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence            34556678889999999885 67789999999999999998877664 78899999999997678889999999999999


Q ss_pred             EEcCCCC----eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee---ee-------eecCceeEEEE
Q 010470          294 WDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN---TI-------IFHSNCNALAF  359 (510)
Q Consensus       294 wd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~-------~~~~~i~~i~~  359 (510)
                      |.++.+.    ++....+|.+.|.+++++.....+|+++|.|+++++|++...+...   .+       .+...|+|+++
T Consensus       392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai  471 (775)
T KOG0319|consen  392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI  471 (775)
T ss_pred             EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence            9885443    4566789999999999988778899999999999999997622111   11       12245999999


Q ss_pred             cCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee
Q 010470          360 SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       360 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  439 (510)
                      +|+...|++|+.|.+.++|++........+.+|. ..+.++.|+|..+.+++++.|.+|+||.+.++.++++|.+|...+
T Consensus       472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aV  550 (775)
T KOG0319|consen  472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAV  550 (775)
T ss_pred             cCCCceEEecccccceeeecccCceEEEEeeCCc-cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcccee
Confidence            9999999999999999999999999999999998 899999999999999999999999999999999999999998777


Q ss_pred             ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          440 ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ..    +.|-.+|..|++++.||-|++|++++++++.++..|.+.|++++-+|.+.+++||+.||.|.+|
T Consensus       551 lr----a~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  551 LR----ASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             Ee----eeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence            65    8899999999999999999999999999999999999999999999999999999999999999

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.1e-35  Score=262.82  Aligned_cols=306  Identities=17%  Similarity=0.265  Sum_probs=256.4

Q ss_pred             cccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-c-eecccccccceeEEEEecC
Q 010470          201 SEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-L-SSTLYGCLGSVLDLAITHD  278 (510)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~-~~~~~~~~~~v~~~~~~~~  278 (510)
                      +..+...+....-.......+..|...++-..|||.|.|+|+|...|+|+|||..... . ..+++.-.++|.+++|+++
T Consensus        35 Y~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d  114 (603)
T KOG0318|consen   35 YTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD  114 (603)
T ss_pred             EeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC
Confidence            3333333333333344567788999999999999999999999999999999986532 2 3456677899999999999


Q ss_pred             CCEEEEEeCC--CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-ee
Q 010470          279 NRSVIAASSS--NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CN  355 (510)
Q Consensus       279 ~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~  355 (510)
                      ++.|++.+..  ...++|-.++|..+..+.+|...|.++.|-|..+..+++|+.|++|.+|+-..-+...++..|+. |+
T Consensus       115 s~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~  194 (603)
T KOG0318|consen  115 SKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN  194 (603)
T ss_pred             CcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence            9999988743  23334444568888999999999999999998888999999999999998766666666666665 99


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec---ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEe
Q 010470          356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA---AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL  432 (510)
Q Consensus       356 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  432 (510)
                      |+.|+|||..+++.+.||+|.+||-.+|+.+..+.   .|. +.|.+++|+||+..+++++.|.+++|||+.+...+.++
T Consensus       195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk-GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK-GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc-ccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence            99999999999999999999999999999999887   555 89999999999999999999999999999999999988


Q ss_pred             ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       433 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..........+ .+.|.  +..|++.+.+|.|.+++.....++..+.+|..+|+++..+|++++|++|+.||.|.-|+
T Consensus       274 ~~~~~v~dqqv-G~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  274 PMGSTVEDQQV-GCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD  348 (603)
T ss_pred             ecCCchhceEE-EEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence            76655222212 23343  67888999999999999999999999999999999999999999999999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.4e-36  Score=279.75  Aligned_cols=283  Identities=21%  Similarity=0.348  Sum_probs=260.1

Q ss_pred             eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      ..+.||...|.+++||.+...+++|+ .++|+||+..+.++++++...  .+.+..|.|.++++++|...|.+.+||+.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            46789999999999999987777776 568999999999999998643  889999999999999999999999999999


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-----CeE--------eeeeeecCceeEEEEcCCCCE
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYC--------VNTIIFHSNCNALAFSMDGQT  365 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~--------~~~~~~~~~i~~i~~~~~~~~  365 (510)
                      ...+.++..|.+.+++++.+| ++..+++||.|.+|++||..-     |..        .+++.....+.|+.++|||++
T Consensus       444 ~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  444 ASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            999999999999999999999 899999999999999999741     211        134445567999999999999


Q ss_pred             EEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470          366 IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR  445 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  445 (510)
                      ++++--|.+|.||-+.+.+....+.+|. -||.|+.++||++.+++|+.|..|++|-+.-|.+-..+.+|...+.+    
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHk-LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~----  597 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHK-LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS----  597 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccc-cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE----
Confidence            9999999999999999999999999998 89999999999999999999999999999999998888888877665    


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          446 SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +.|-|....+++++.||.|+-||-...+.+..+.+|...|++++.+|+|.+++++|.|.+|++|.
T Consensus       598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             EEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            89999999999999999999999999999999999999999999999999999999999999995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-37  Score=264.36  Aligned_cols=267  Identities=25%  Similarity=0.466  Sum_probs=233.8

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      ...+|.|+.+.  ...+++|..|++|+|||.++..+...+.||.+.|.|+.|.  .+.+++|+.|.+|++||+++++++.
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence            34579999986  4589999999999999999999999999999999999984  6699999999999999999999999


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---eeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWD  379 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d  379 (510)
                      ++-+|...|..+.|+   ++++++++.|.++.+||+.+...   .+.+.+| ..|+.+.|+  .+++++++.|.+|++|+
T Consensus       272 tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS  346 (499)
T ss_pred             HHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence            999999999999995   58999999999999999976542   2233344 458888884  67999999999999999


Q ss_pred             CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      +.++..+..+.+|. .+|-|+.+  .|+++++|+.|++|++||+..|..+..+.+|..-+.+    +  -.|.+.|++|+
T Consensus       347 ~st~efvRtl~gHk-RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRc----i--RFd~krIVSGa  417 (499)
T KOG0281|consen  347 TSTCEFVRTLNGHK-RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC----I--RFDNKRIVSGA  417 (499)
T ss_pred             ccceeeehhhhccc-ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhh----e--eecCceeeecc
Confidence            99999999999988 78888877  5899999999999999999999999999998887754    4  44788999999


Q ss_pred             CCCeEEEEeCCCcc---------eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          460 ADGSVYIWSISKAD---------IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       460 ~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .||+|+|||+..+.         ++.++..|++.|..+.|  |...+++++.|.+|.|||
T Consensus       418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD  475 (499)
T ss_pred             ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence            99999999998753         34455669999999999  566899999999999997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.9e-37  Score=268.65  Aligned_cols=268  Identities=22%  Similarity=0.354  Sum_probs=231.6

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc-
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-  265 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-  265 (510)
                      ..+.+++..|.+..|+...         ......+.+|..+|.++.|+++|.++++|+.+|.|++|+.+-... ..+.. 
T Consensus       109 RRLltgs~SGEFtLWNg~~---------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ah  178 (464)
T KOG0284|consen  109 RRLLTGSQSGEFTLWNGTS---------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAH  178 (464)
T ss_pred             ceeEeecccccEEEecCce---------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhhHh
Confidence            4566777777788887533         334456789999999999999999999999999999999875444 44554 


Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      |...|.+++|+|++..+++++.||+|+|||....+....+.+|.-.|.++.|+| ...+|+++|.|..|++||.+++.++
T Consensus       179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl  257 (464)
T KOG0284|consen  179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCL  257 (464)
T ss_pred             hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchh
Confidence            459999999999999999999999999999999988889999999999999999 7889999999999999999999999


Q ss_pred             eeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEc
Q 010470          346 NTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       346 ~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~  423 (510)
                      .++..|.. |..+.|+|++++|++++.|..+++||+++.+.++.+..|. ..++++.|+| ...+|.+|+.||.|..|.+
T Consensus       258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk-kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v  336 (464)
T KOG0284|consen  258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK-KDVTSLTWHPLNESLFTSGGSDGSVVHWVV  336 (464)
T ss_pred             hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch-hhheeeccccccccceeeccCCCceEEEec
Confidence            99988755 9999999999999999999999999999999999999887 8999999999 4568889999999999999


Q ss_pred             CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      ...+++..+.   ......+.+++|+|-|.+|++|+.|.++++|.-
T Consensus       337 ~~~~p~~~i~---~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  337 GLEEPLGEIP---PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             cccccccCCC---cccccceeeeeccccceeEeecCCCcceeeecc
Confidence            8544443332   222234455999999999999999999999974

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.2e-36  Score=276.87  Aligned_cols=311  Identities=23%  Similarity=0.333  Sum_probs=260.2

Q ss_pred             hHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc
Q 010470          186 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG  265 (510)
Q Consensus       186 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  265 (510)
                      ...++-|-.||.+++|+....         ....++.||...|+++.|+..|.+|++||.|+.|.+||+-...-...+.|
T Consensus        77 ~l~lAVGYaDGsVqif~~~s~---------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~G  147 (888)
T KOG0306|consen   77 ILLLAVGYADGSVQIFSLESE---------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRG  147 (888)
T ss_pred             cceEEEEecCceEEeeccCCC---------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeec
Confidence            344577888999999986642         45678999999999999999999999999999999999987777788889


Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe-----------------------------------------
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT-----------------------------------------  304 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----------------------------------------  304 (510)
                      |...|+..-|..+.+++++++.|+.|++||+.+..+..+                                         
T Consensus       148 Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~  227 (888)
T KOG0306|consen  148 HKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKET  227 (888)
T ss_pred             chHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccc
Confidence            988888888887778888888888888888864411111                                         


Q ss_pred             --------------------------------------------------------------------------------
Q 010470          305 --------------------------------------------------------------------------------  304 (510)
Q Consensus       305 --------------------------------------------------------------------------------  304 (510)
                                                                                                      
T Consensus       228 ~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl  307 (888)
T KOG0306|consen  228 NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL  307 (888)
T ss_pred             cccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------ecCCCCceEEEEEecCCCC
Q 010470          305 -------------------------------------------------------------LTGHTDKVCAVDVSKISSR  323 (510)
Q Consensus       305 -------------------------------------------------------------~~~~~~~v~~i~~~~~~~~  323 (510)
                                                                                   +.+|...|.+++++. +..
T Consensus       308 ~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~~  386 (888)
T KOG0306|consen  308 SDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DSI  386 (888)
T ss_pred             HHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-Cce
Confidence                                                                         346777888888876 444


Q ss_pred             EEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEc
Q 010470          324 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS  403 (510)
Q Consensus       324 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~  403 (510)
                      .+++| ..+.|++|+..+.++++++... .+.+..|.|.++++++|...|.+.+||+.+...+..+..|. +.|.+++.+
T Consensus       387 ~~~Sg-a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd-gaIWsi~~~  463 (888)
T KOG0306|consen  387 LLASG-AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD-GAIWSISLS  463 (888)
T ss_pred             eeeec-CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc-cceeeeeec
Confidence            44444 4789999999999999998877 68889999999999999999999999999999998888777 999999999


Q ss_pred             CCCCEEEEEecCCcEEEEEcCCc-----eeeeEeecC---CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470          404 RSGNIILTSGRDNLHNLFDIRSL-----EVCGSLRAT---GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV  475 (510)
Q Consensus       404 ~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  475 (510)
                      ||+..+++++.|.+|++||..-.     .....+..+   .-.....+.++.+||||++|+++=-|.+|+||-+++.+..
T Consensus       464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf  543 (888)
T KOG0306|consen  464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF  543 (888)
T ss_pred             CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee
Confidence            99999999999999999997521     111111111   1122335667999999999999999999999999999999


Q ss_pred             ecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          476 RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       476 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      -++-||.-||.|+..|||++.++|||.|.+|++|
T Consensus       544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             eeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence            9999999999999999999999999999999999

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=256.72  Aligned_cols=268  Identities=19%  Similarity=0.334  Sum_probs=235.6

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..++++..|..|+.|+.....       .....++.|-.++|+.+.|.+++.++++++.|+.+++|++++.+...++.+|
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k-------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH  260 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEK-------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH  260 (459)
T ss_pred             chhhhcchhhhhhhhhcccch-------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccc
Confidence            568889999999999855421       3466788899999999999999999999999999999999999999999999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      .+.|+++.|......+++|+.|.+|++||+....+..++. ....+..|...   ...+++|-.|+.|++||.+++.+..
T Consensus       261 tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~  336 (459)
T KOG0288|consen  261 TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTR  336 (459)
T ss_pred             ccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceee
Confidence            9999999998887779999999999999999888777765 34556666664   4678999999999999999999999


Q ss_pred             eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc---cccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          347 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS---LAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      .+..++.++++..+++|..+.+++.|.++.++|+++......+....   ....+.+.|||++.|+++|+.||.|+||++
T Consensus       337 sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  337 SVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV  416 (459)
T ss_pred             EeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence            99999999999999999999999999999999999988877776432   245888999999999999999999999999


Q ss_pred             CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470          424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW  467 (510)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw  467 (510)
                      .++++...+.......  .+.+++|+|.|.++++++.++.+.+|
T Consensus       417 ~tgKlE~~l~~s~s~~--aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  417 FTGKLEKVLSLSTSNA--AITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cCceEEEEeccCCCCc--ceEEEEEcCCCchhhcccCCcceEec
Confidence            9999988877655442  45669999999999999999999999

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.2e-36  Score=256.71  Aligned_cols=268  Identities=24%  Similarity=0.419  Sum_probs=243.5

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-Ccceecccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-GSLSSTLYG  265 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~  265 (510)
                      ...+..+.|+.+++|+...         ..+...++||...|..++|+..|+++++++.|=.+++||..+ .++++...+
T Consensus       121 ~~v~~as~d~tikv~D~~t---------g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g  191 (406)
T KOG0295|consen  121 ALVVSASEDATIKVFDTET---------GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG  191 (406)
T ss_pred             eEEEEecCCceEEEEEccc---------hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC
Confidence            3445566788888888544         446788999999999999999999999999999999999987 567888899


Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      |...|.+++|-|.|.++++++.|.+|+.|++.+|-++.++.+|...|..+..+. ++.++++++.|.++++|-+.++.+.
T Consensus       192 h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k  270 (406)
T KOG0295|consen  192 HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCK  270 (406)
T ss_pred             cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhh
Confidence            999999999999999999999999999999999999999999999999999998 8999999999999999999999888


Q ss_pred             eeeeec-CceeEEEEcCC---------------CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEE
Q 010470          346 NTIIFH-SNCNALAFSMD---------------GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII  409 (510)
Q Consensus       346 ~~~~~~-~~i~~i~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  409 (510)
                      ..+..+ .++.|++|.|.               +.++.+++.|++|++||+.++.++.++.+|. ..|.+++|+|.|+||
T Consensus       271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd-nwVr~~af~p~Gkyi  349 (406)
T KOG0295|consen  271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD-NWVRGVAFSPGGKYI  349 (406)
T ss_pred             hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc-ceeeeeEEcCCCeEE
Confidence            777766 45788888653               3589999999999999999999999999998 999999999999999


Q ss_pred             EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          410 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      +++.+|+++++||+++.+....+..+...+.+    +.|+.+..++++|+-|.++++|..
T Consensus       350 ~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~----lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  350 LSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS----LDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEecCCcEEEEEeccceeeeccCCCcceeEE----EecCCCCceEEeccccceeeeeec
Confidence            99999999999999999999999988777765    899999999999999999999974

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.4e-36  Score=255.34  Aligned_cols=245  Identities=27%  Similarity=0.461  Sum_probs=230.4

Q ss_pred             cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470          258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW  337 (510)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw  337 (510)
                      +..+.+.+|.+.|.|+++.|.+..|++|+.|+++.|||+.+|++..++.+|...|..+++++ -..++++++.|+.|+.|
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEE
Confidence            33456789999999999999999999999999999999999999999999999999999998 78899999999999999


Q ss_pred             ECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC
Q 010470          338 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN  416 (510)
Q Consensus       338 d~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~  416 (510)
                      |+...+.++.+.+| +.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|. .+|.++.+.|-...+++|+.|+
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~-~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT-NPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC-CcceeEEeecCCCceEEecCCc
Confidence            99999999988877 669999999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc
Q 010470          417 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP  496 (510)
Q Consensus       417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  496 (510)
                      +|++||++.++....+..|...+..    ++.+|....+++++.|. |+-|++..|..+..+.+|..-|++++...|| +
T Consensus       300 tvrlWDl~agkt~~tlt~hkksvra----l~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v  373 (460)
T KOG0285|consen  300 TVRLWDLRAGKTMITLTHHKKSVRA----LCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V  373 (460)
T ss_pred             eEEEeeeccCceeEeeecccceeeE----EecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-e
Confidence            9999999999999999888877765    89999999999999886 9999999999999999999999999998876 7


Q ss_pred             EEEeeCCCeEEEcC
Q 010470          497 LASADKNGVVCVWT  510 (510)
Q Consensus       497 l~s~~~dg~i~iwd  510 (510)
                      +++|+.+|.+.+||
T Consensus       374 ~~~G~dng~~~fwd  387 (460)
T KOG0285|consen  374 LVSGGDNGSIMFWD  387 (460)
T ss_pred             EEEcCCceEEEEEe
Confidence            89999999999997

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=2.8e-35  Score=262.47  Aligned_cols=296  Identities=21%  Similarity=0.384  Sum_probs=238.5

Q ss_pred             CCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc----eeccc-ccccceeEEEEecCCCEEEEEe
Q 010470          212 TVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL----SSTLY-GCLGSVLDLAITHDNRSVIAAS  286 (510)
Q Consensus       212 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~l~~~~  286 (510)
                      .+|..+...+.+|+..|+++++.|.|..|++||.|..|++||+.....    .+.+. .....|.++.|++.|..|++.+
T Consensus       154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence            478888999999999999999999999999999999999999974322    22222 3456899999999999999999


Q ss_pred             CCCeEEEEEcCCCCeeE------------eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-eeeeeec--
Q 010470          287 SSNNLYVWDVNSGRVRH------------TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIFH--  351 (510)
Q Consensus       287 ~d~~i~iwd~~~~~~~~------------~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~--  351 (510)
                      .....+|+|-.......            .-+||...++|.+|+|.+...|++++.||++++||+...+. ...+...  
T Consensus       234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence            99999999954322221            23589999999999999899999999999999999986543 2222221  


Q ss_pred             ----CceeEEEEcCCCCEEEEecCCCcEEEEECCCC--ceeeeeccccc--ccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          352 ----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG--KLLSEVAAHSL--AAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       352 ----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                          -+++.++|+++|+.|++|+.||.|.+|+.++.  .+...+...|.  ..|+||.||++|++|++-+.|+++++||+
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence                24889999999999999999999999997543  33334443332  38999999999999999999999999999


Q ss_pred             CCce-eeeEeecCCCeeecCceeEEEcCCCCEEEEEcC------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc
Q 010470          424 RSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGSA------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP  496 (510)
Q Consensus       424 ~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  496 (510)
                      +..+ ++....+-....  .-+.++|||+.++|++|+.      .|.+++||..+...+..+......|..+.|+|.-+.
T Consensus       394 rq~kkpL~~~tgL~t~~--~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQ  471 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLPTPF--PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQ  471 (641)
T ss_pred             cccccchhhhcCCCccC--CCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhh
Confidence            9754 333333322222  2244799999999999875      578999999999999988878889999999999999


Q ss_pred             EEEeeCCCeEEEc
Q 010470          497 LASADKNGVVCVW  509 (510)
Q Consensus       497 l~s~~~dg~i~iw  509 (510)
                      |+.|+.||.+++|
T Consensus       472 i~~gsgdG~~~vy  484 (641)
T KOG0772|consen  472 IFAGSGDGTAHVY  484 (641)
T ss_pred             eeeecCCCceEEE
Confidence            9999999999886

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=9.9e-35  Score=243.18  Aligned_cols=295  Identities=20%  Similarity=0.353  Sum_probs=248.1

Q ss_pred             CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC------------C------cceecccccccceeEEEE
Q 010470          214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT------------G------SLSSTLYGCLGSVLDLAI  275 (510)
Q Consensus       214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~  275 (510)
                      +......+..|.+++.+.+|||||.++++|+.|.+|+|.|++.            +      ..++++..|...|+++.|
T Consensus       101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F  180 (430)
T KOG0640|consen  101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF  180 (430)
T ss_pred             cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence            3345567889999999999999999999999999999999861            1      246788899999999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--
Q 010470          276 THDNRSVIAASSSNNLYVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--  351 (510)
Q Consensus       276 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  351 (510)
                      +|....|++|+.|++|++||+......+.++  ....+|.++.|+| .+.+++.|....++++||+++-++...-...  
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~q  259 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ  259 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence            9999999999999999999997654333322  3567899999999 8999999999999999999998876554432  


Q ss_pred             --CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc-cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee
Q 010470          352 --SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV  428 (510)
Q Consensus       352 --~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~  428 (510)
                        ..|+++.+++.|++.++|+.||.|++||--+++++.++.. |....|.+..|..+|+|+++++.|..+++|.+.+++.
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence              3599999999999999999999999999999999998874 4456899999999999999999999999999999999


Q ss_pred             eeEeecCCCeeec-CceeEEEcCCCCEEEEEcC-CCeEEEEeCCCcceeeccc-ccCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470          429 CGSLRATGNRVAS-NWSRSCISPDESYVAAGSA-DGSVYIWSISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGV  505 (510)
Q Consensus       429 ~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~  505 (510)
                      +..+.+.+..... --+...|.....|++.-.. .+.+.-||..+...+..+. +|.+++..+.-||.+..+++|+.|..
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r  419 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR  419 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence            9988766432211 1122456777777766543 5789999999887766553 59999999999999999999999999


Q ss_pred             EEEc
Q 010470          506 VCVW  509 (510)
Q Consensus       506 i~iw  509 (510)
                      +++|
T Consensus       420 aRFW  423 (430)
T KOG0640|consen  420 ARFW  423 (430)
T ss_pred             eeee
Confidence            9999

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.2e-34  Score=278.01  Aligned_cols=270  Identities=28%  Similarity=0.519  Sum_probs=235.6

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeC-CCCcceecccccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT-NTGSLSSTLYGCL  267 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~  267 (510)
                      ++.++.++.+++|.....       .......+.+|...|++++|+|+|.++++|+.|++|+|||+ ..+..+.++.+|.
T Consensus       174 l~~~~~~~~i~~~~~~~~-------~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~  246 (456)
T KOG0266|consen  174 LAAASSDGLIRIWKLEGI-------KSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS  246 (456)
T ss_pred             EEEccCCCcEEEeecccc-------cchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC
Confidence            455566777777765220       00356667899999999999999999999999999999999 5668899999999


Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--Ee
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--CV  345 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~  345 (510)
                      ..|++++|+|+++.+++|+.|++|+|||+.++++...+.+|.+.|.+++|++ ++++|++++.||.|++||+.++.  +.
T Consensus       247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~  325 (456)
T KOG0266|consen  247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCL  325 (456)
T ss_pred             CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeee
Confidence            9999999999999999999999999999999999999999999999999999 89999999999999999999998  55


Q ss_pred             eeeeecC---ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc--cEEEEEEcCCCCEEEEEecCCcEEE
Q 010470          346 NTIIFHS---NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA--AVTSISLSRSGNIILTSGRDNLHNL  420 (510)
Q Consensus       346 ~~~~~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~i  420 (510)
                      ..+....   .+++++|+|++.++++++.|+.+++||+..+..+..+..+...  .+.+..+++.+.++++|+.|+.|.+
T Consensus       326 ~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~  405 (456)
T KOG0266|consen  326 KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV  405 (456)
T ss_pred             ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence            6665443   4699999999999999999999999999999999999888754  5556667889999999999999999


Q ss_pred             EEcCCceeeeEeecC-CCeeecCceeEEEcCCCCEEEEEc--CCCeEEEEeCC
Q 010470          421 FDIRSLEVCGSLRAT-GNRVASNWSRSCISPDESYVAAGS--ADGSVYIWSIS  470 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~  470 (510)
                      ||+.++..+..+.++ ...+    ..+.++|..+++++++  .|+.+++|...
T Consensus       406 ~~~~s~~~~~~l~~h~~~~~----~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  406 WDSSSGGILQRLEGHSKAAV----SDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EeCCccchhhhhcCCCCCce----eccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999998888888888 3333    3478999999999998  68899999754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-34  Score=273.22  Aligned_cols=281  Identities=19%  Similarity=0.355  Sum_probs=250.5

Q ss_pred             eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470          220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG  299 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  299 (510)
                      .|...+..|.+++|+|....++++-..|.|++||..-+.++..|..|.++|..++|+|.+.++++|+.|..|++|+..+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            45566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          300 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                      +++.++.+|-+.|..+.|++ .-..|+++|.|.+|+||+..+++++..+.+|.. |.|..|+|....+++++-|.+|++|
T Consensus        84 rclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             eehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence            99999999999999999999 888999999999999999999999999998865 9999999999999999999999999


Q ss_pred             ECCCCc----------------------------eee-eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee-
Q 010470          379 DIQTGK----------------------------LLS-EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-  428 (510)
Q Consensus       379 d~~~~~----------------------------~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-  428 (510)
                      |+...+                            .++ .+.+|. ..|+-++|+|.-.+|++|++|..|++|.+...+. 
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW  241 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW  241 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence            984211                            111 223444 7899999999999999999999999999875432 


Q ss_pred             -eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          429 -CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       429 -~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                       +.+.++|.+.+.+    +-|+|..++|++.|.|++|+|||+...+.+.+++...+..+.++-+|..+++++|-+.|.+
T Consensus       242 EvDtcrgH~nnVss----vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~  316 (1202)
T KOG0292|consen  242 EVDTCRGHYNNVSS----VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMI  316 (1202)
T ss_pred             eehhhhcccCCcce----EEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceE
Confidence             3455677766655    8899999999999999999999999999999998888889999999999988877666654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.4e-34  Score=246.35  Aligned_cols=275  Identities=25%  Similarity=0.427  Sum_probs=236.0

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCC---EEEEEeCCCeEEEEEcCCC
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR---SVIAASSSNNLYVWDVNSG  299 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~  299 (510)
                      .|.+.|.++...  ++.+++|+.||.+++||.. |+...++.+|.++|.+++|...+.   .|++++.|.++++|..+.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            488999999887  7799999999999999986 888899999999999999865444   4999999999999998876


Q ss_pred             Ce----eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-------------------------CeEeeeeee
Q 010470          300 RV----RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-------------------------GYCVNTIIF  350 (510)
Q Consensus       300 ~~----~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-------------------------~~~~~~~~~  350 (510)
                      ..    +..-.||...|-++...+ ++..+++|+.|.+|++|+..+                         +.++-++.+
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            53    333459999999999998 899999999999999999321                         124445555


Q ss_pred             c-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce--
Q 010470          351 H-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE--  427 (510)
Q Consensus       351 ~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~--  427 (510)
                      | .+|.++.|++ ...+++++.|.+|+.||+.++.....+...  ..++++.++|..++|++|+.|..+++||.+++.  
T Consensus       259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence            5 4589999986 778899999999999999999999888877  689999999999999999999999999999743  


Q ss_pred             -eeeEeecCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCcc-eeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          428 -VCGSLRATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISKAD-IVRTLKEHTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       428 -~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                       ....+.+|.+.+..    +.|+|... .|++|+.||++++||+++.+ ++..+.+|...|.++.|+. +..+++||.|.
T Consensus       336 ~v~~s~~gH~nwVss----vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~  410 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSS----VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN  410 (423)
T ss_pred             eeEEeeecchhhhhh----eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence             45667777776554    89999655 58899999999999999877 9999999999999999975 56899999999


Q ss_pred             eEEEc
Q 010470          505 VVCVW  509 (510)
Q Consensus       505 ~i~iw  509 (510)
                      +|+|+
T Consensus       411 ~l~i~  415 (423)
T KOG0313|consen  411 KLRIF  415 (423)
T ss_pred             eEEEe
Confidence            99987

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.1e-35  Score=275.10  Aligned_cols=249  Identities=21%  Similarity=0.369  Sum_probs=214.8

Q ss_pred             eeecc-ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC----------------------------------------
Q 010470          218 KHKIN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNT----------------------------------------  256 (510)
Q Consensus       218 ~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------------------------------------  256 (510)
                      ...+. +|.|.|.++.||+||+|||+||.||.|+||.+..                                        
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34556 9999999999999999999999999999998643                                        


Q ss_pred             --------------------CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEE
Q 010470          257 --------------------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD  316 (510)
Q Consensus       257 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~  316 (510)
                                          .+++..+.||.+.|.++.|+. +++|++++.|.+|++|++....+++.|. |.+.|+||+
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence                                012244679999999999995 5689999999999999999999999998 999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc---
Q 010470          317 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS---  393 (510)
Q Consensus       317 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  393 (510)
                      |+|.+.++|++|+-||.|+||++...+.+.....+.-|++++|.|||+..++|+.+|.+++|+....+....+..+.   
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~  496 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK  496 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence            99999999999999999999999998888888888889999999999999999999999999998877665543221   


Q ss_pred             ----cccEEEEEEcCCCC-EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          394 ----LAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       394 ----~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                          ...|+++.|.|... .+++.+.|..|+|||.+...++..|++..+...  -....|+.||++|++++.|..|+||+
T Consensus       497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S--Q~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS--QISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc--ceeeeEccCCCEEEEeecCceEEEEe
Confidence                14799999998543 588888999999999998888888887655433  23367899999999999999999999


Q ss_pred             CC
Q 010470          469 IS  470 (510)
Q Consensus       469 ~~  470 (510)
                      +.
T Consensus       575 ~~  576 (712)
T KOG0283|consen  575 ND  576 (712)
T ss_pred             CC
Confidence            74

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.5e-35  Score=250.44  Aligned_cols=262  Identities=27%  Similarity=0.461  Sum_probs=224.0

Q ss_pred             hHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc
Q 010470          186 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG  265 (510)
Q Consensus       186 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  265 (510)
                      -+.+++|..|.++++|+...         ..|...+.||+|.|.|+.|.  .+.+++|++|.+|+|||+++|+++.++.+
T Consensus       207 D~kiVSGlrDnTikiWD~n~---------~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih  275 (499)
T KOG0281|consen  207 DEKIVSGLRDNTIKIWDKNS---------LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH  275 (499)
T ss_pred             chhhhcccccCceEEecccc---------HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence            35678889999999999765         46889999999999999987  45999999999999999999999999999


Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~  342 (510)
                      |...|..+.|+  +.++++++.|.++.+||+.+..   +.+.+.||...|..+.|.   .+++++++.|.+|++|++.++
T Consensus       276 HceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  276 HCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             hcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccce
Confidence            99999999996  6789999999999999998765   456678999999999984   579999999999999999999


Q ss_pred             eEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          343 YCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       343 ~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      .+++++.+|. .|.|+.+  .|+++++|+.|.+|++||+..|.++..+.+|. .-|.++.|+  .+.+++|+.||+|++|
T Consensus       351 efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE-eLvRciRFd--~krIVSGaYDGkikvW  425 (499)
T KOG0281|consen  351 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRFD--NKRIVSGAYDGKIKVW  425 (499)
T ss_pred             eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH-Hhhhheeec--CceeeeccccceEEEE
Confidence            9999998885 4777776  68999999999999999999999999999987 889999994  6789999999999999


Q ss_pred             EcCCceeee---------EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470          422 DIRSLEVCG---------SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       422 d~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      |+..+....         .+..+.+.+    .  .+..|...|++++.|.+|.|||..++-+
T Consensus       426 dl~aaldpra~~~~~Cl~~lv~hsgRV----F--rLQFD~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  426 DLQAALDPRAPASTLCLRTLVEHSGRV----F--RLQFDEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             ecccccCCcccccchHHHhhhhcccee----E--EEeecceEEEeccCCCeEEEEEcCCCCc
Confidence            998654321         111222222    2  2344677899999999999999887654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3e-35  Score=251.29  Aligned_cols=280  Identities=17%  Similarity=0.297  Sum_probs=237.4

Q ss_pred             ceeeccccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          217 CKHKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      .+..+.||..+|.|++=+|.. ..+++|+.||.|+|||+.+..+..++..|.+.|..++++.  ..+++++.|.+|+.|.
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            455678999999999999987 7899999999999999999999999999999999999986  6789999999999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCC-CEEEEecCCC
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDG-QTIFSGHIDG  373 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~-~~l~~~~~dg  373 (510)
                      +.. .+.+++.+ ...+.++.-+. .++.++|||.  .|.|||.....++..+.... .+.++.|+|.. ..|++|..|+
T Consensus       136 ~~~-~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr  210 (433)
T KOG0268|consen  136 IDG-PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR  210 (433)
T ss_pred             ccC-Ccceeeec-ccccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence            774 56676653 45667777666 6778888874  69999999999999988764 49999999955 4566777999


Q ss_pred             cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc-eeeeEeecCCCeeecCceeEEEcCCC
Q 010470          374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPDE  452 (510)
Q Consensus       374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~  452 (510)
                      .|.+||++.+.++..+...  ...+.|+|+|.+..+++++.|..++.||++.. .++.....|...+..    +.|||.|
T Consensus       211 sIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~d----VdfsptG  284 (433)
T KOG0268|consen  211 SIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMD----VDFSPTG  284 (433)
T ss_pred             ceEEEecccCCccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEE----eccCCCc
Confidence            9999999999999888766  57788999998889999999999999999974 445555566555544    9999999


Q ss_pred             CEEEEEcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          453 SYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       453 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      +-|++||.|.+|+||.+..+.....+.. -...|.++.||.|.+++++|++|+.|++|
T Consensus       285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW  342 (433)
T KOG0268|consen  285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLW  342 (433)
T ss_pred             chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeee
Confidence            9999999999999999987765444321 24579999999999999999999999999

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-33  Score=226.70  Aligned_cols=241  Identities=21%  Similarity=0.356  Sum_probs=215.7

Q ss_pred             eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 010470          260 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL  339 (510)
Q Consensus       260 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~  339 (510)
                      ...+..+.++|..+.|+-+|+|.++++.|.+|++|++..+.+++++.+|...|..++.+. ++..|++|+.|..+.+||+
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEc
Confidence            456778999999999999999999999999999999999999999999999999999988 7888999999999999999


Q ss_pred             CCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCC--CceeeeecccccccEEEEEEcCCCCEEEEEecCC
Q 010470          340 HKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQT--GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN  416 (510)
Q Consensus       340 ~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~  416 (510)
                      .+|+.++.+..|. .|+.+.|+.+...+++|+.|..+++||.++  .++++.+.... ..|.+|.+.  +..|++|+.||
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~-D~V~Si~v~--~heIvaGS~DG  165 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK-DGVSSIDVA--EHEIVAGSVDG  165 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc-CceeEEEec--ccEEEeeccCC
Confidence            9999999999884 599999999999999999999999999986  46777777665 788888875  67899999999


Q ss_pred             cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCE--EEEEEeCCC
Q 010470          417 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV--LSCSWSGLG  494 (510)
Q Consensus       417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~  494 (510)
                      +++.||++.+.....+      ...++++++|++||+...+++.|+++++.|-.+|+++..+++|.+.-  ..++++...
T Consensus       166 tvRtydiR~G~l~sDy------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd  239 (307)
T KOG0316|consen  166 TVRTYDIRKGTLSSDY------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD  239 (307)
T ss_pred             cEEEEEeecceeehhh------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence            9999999998765433      23345669999999999999999999999999999999999997754  455777777


Q ss_pred             CcEEEeeCCCeEEEcC
Q 010470          495 KPLASADKNGVVCVWT  510 (510)
Q Consensus       495 ~~l~s~~~dg~i~iwd  510 (510)
                      ..+++|+.||.|++||
T Consensus       240 thV~sgSEDG~Vy~wd  255 (307)
T KOG0316|consen  240 THVFSGSEDGKVYFWD  255 (307)
T ss_pred             eeEEeccCCceEEEEE
Confidence            8999999999999997

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.4e-33  Score=235.44  Aligned_cols=245  Identities=23%  Similarity=0.441  Sum_probs=215.7

Q ss_pred             ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC-CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470          259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN-SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW  337 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw  337 (510)
                      ++..+.+|.+.|+.+.|+|+|.+|++|+.|..|.+|++. .-+....+++|.+.|..+.|.+ +++.+++++.|.+|+.|
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEE
Confidence            345577999999999999999999999999999999964 3446678889999999999999 89999999999999999


Q ss_pred             ECCCCeEeeeeeecCc-eeEEEEcCCCC-EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470          338 DLHKGYCVNTIIFHSN-CNALAFSMDGQ-TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD  415 (510)
Q Consensus       338 d~~~~~~~~~~~~~~~-i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  415 (510)
                      |.++|++++.+..+.. ++++..+.-|. ++.+|+.||++++||+|+...++.+...  ..++++.|...+..+++|+-|
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeecccc
Confidence            9999999999999877 56666443444 5558999999999999999988888665  789999999999999999999


Q ss_pred             CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc----ceeecccccC----cCEEE
Q 010470          416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA----DIVRTLKEHT----APVLS  487 (510)
Q Consensus       416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~----~~v~~  487 (510)
                      +.|++||++.......+.+|..++..    +..+|+|.++.+-+.|.++++||+...    .++..+.+|.    .....
T Consensus       196 n~ikvWd~r~~d~~~~lsGh~DtIt~----lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~  271 (338)
T KOG0265|consen  196 NDIKVWDLRKNDGLYTLSGHADTITG----LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK  271 (338)
T ss_pred             CceeeeccccCcceEEeecccCceee----EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence            99999999999999999999988876    999999999999999999999998753    3466666643    23567


Q ss_pred             EEEeCCCCcEEEeeCCCeEEEcC
Q 010470          488 CSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       488 ~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++|+|++..+-+|+.|..+++||
T Consensus       272 cswsp~~~~i~ags~dr~vyvwd  294 (338)
T KOG0265|consen  272 CSWSPNGTKITAGSADRFVYVWD  294 (338)
T ss_pred             eeccCCCCccccccccceEEEee
Confidence            89999999999999999999997

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=256.77  Aligned_cols=249  Identities=22%  Similarity=0.380  Sum_probs=219.7

Q ss_pred             CcceecccccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcE
Q 010470          257 GSLSSTLYGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL  334 (510)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i  334 (510)
                      .+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+|..+|.+++|++ .+..|+++|.|+.|
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFL  282 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceee
Confidence            455678899999999999999 899999999999999999976 889999999999999999999 89999999999999


Q ss_pred             EEEECCCCeEeeeeeecCceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470          335 KVWDLHKGYCVNTIIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG  413 (510)
Q Consensus       335 ~iwd~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  413 (510)
                      ++||+++|+++..+.....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|- +.|..+.|-++|..+++++
T Consensus       283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-g~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-GAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh-hheeeeEEccCCceEeeec
Confidence            99999999999999999999999999988 889999999999999999999998888776 9999999999999999999


Q ss_pred             cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc---ceeecccccCc--CEEEE
Q 010470          414 RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA---DIVRTLKEHTA--PVLSC  488 (510)
Q Consensus       414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~--~v~~~  488 (510)
                      .|+.++||+.+....+........   ....++..+|++.++++-+.|+.|.+|.+...   .....+.+|..  --..+
T Consensus       362 Ddks~riWe~~~~v~ik~i~~~~~---hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v  438 (503)
T KOG0282|consen  362 DDKSVRIWENRIPVPIKNIADPEM---HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV  438 (503)
T ss_pred             cCccEEEEEcCCCccchhhcchhh---ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence            999999999987666544432211   12234788999999999999999999997653   23455677753  45678


Q ss_pred             EEeCCCCcEEEeeCCCeEEEcC
Q 010470          489 SWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       489 ~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .|||||.+|++|+.||.+.+||
T Consensus       439 ~fSpDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  439 DFSPDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             EEcCCCCeEEeecCCccEEEee
Confidence            9999999999999999999997

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=235.77  Aligned_cols=269  Identities=14%  Similarity=0.229  Sum_probs=227.8

Q ss_pred             chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc
Q 010470          185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY  264 (510)
Q Consensus       185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  264 (510)
                      .....++|..|..--+|..+.         ......+.+|...|+|+.||.+|.+||||+.+|.|+||...++.....+.
T Consensus        75 ~~~l~aTGGgDD~AflW~~~~---------ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~  145 (399)
T KOG0296|consen   75 NNNLVATGGGDDLAFLWDIST---------GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD  145 (399)
T ss_pred             CCceEEecCCCceEEEEEccC---------CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence            445567777777777777554         22567889999999999999999999999999999999999999888887


Q ss_pred             ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470          265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC  344 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  344 (510)
                      .....+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++-.|.| +++.++++..||+|++||+.++.+
T Consensus       146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p  224 (399)
T KOG0296|consen  146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQP  224 (399)
T ss_pred             cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCce
Confidence            6777888899999999999999999999999999889999999999999999999 799999999999999999999987


Q ss_pred             eeeeeecC--c--------------------------------------------------eeEEEEcC---CCCEEEEe
Q 010470          345 VNTIIFHS--N--------------------------------------------------CNALAFSM---DGQTIFSG  369 (510)
Q Consensus       345 ~~~~~~~~--~--------------------------------------------------i~~i~~~~---~~~~l~~~  369 (510)
                      +..+....  .                                                  +.|+.+.|   .=.+.++|
T Consensus       225 ~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G  304 (399)
T KOG0296|consen  225 LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG  304 (399)
T ss_pred             eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence            76654100  0                                                  01111111   12346788


Q ss_pred             cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470          370 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       370 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                      +-||+|.|||+...++.......  .+|..+.|.+ ..+|++++.+|.|+.||.|+++....+.+|...+..    ++++
T Consensus       305 ~vdG~i~iyD~a~~~~R~~c~he--~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~----f~ls  377 (399)
T KOG0296|consen  305 SVDGTIAIYDLAASTLRHICEHE--DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD----FALS  377 (399)
T ss_pred             cccceEEEEecccchhheeccCC--CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE----EEEc
Confidence            99999999998777655554433  7899999999 889999999999999999999999999999988876    8899


Q ss_pred             CCCCEEEEEcCCCeEEEEeCC
Q 010470          450 PDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       450 ~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      |++++++++|.|++.+||++.
T Consensus       378 ~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  378 PQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CCCcEEEEecCCCeEEEEecC
Confidence            999999999999999999864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-32  Score=225.09  Aligned_cols=269  Identities=22%  Similarity=0.344  Sum_probs=219.7

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeec-cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC--cceeccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKI-NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTLY  264 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~  264 (510)
                      .+++++.|..+++|+...      .-...|+..+ .+|+..|.+++|+|.|++|++||.|.++.||.-..+  +++.++.
T Consensus        29 ilAscg~Dk~vriw~~~~------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE  102 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWSTSS------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE  102 (312)
T ss_pred             EEEeecCCceEEEEecCC------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee
Confidence            477889999999998663      1124466555 479999999999999999999999999999987654  5688899


Q ss_pred             ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC---CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-
Q 010470          265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-  340 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-  340 (510)
                      ||...|.+++|+++|++|++++.|+.|.||.+..+   .+...++.|...|..+.|+| ...+|+++|+|++|++|.-. 
T Consensus       103 GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~  181 (312)
T KOG0645|consen  103 GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDED  181 (312)
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecC
Confidence            99999999999999999999999999999998754   37788999999999999999 88999999999999999876 


Q ss_pred             --CCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCc
Q 010470          341 --KGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL  417 (510)
Q Consensus       341 --~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  417 (510)
                        .-.+++++..+. .+.+++|+|.|..+++++.|++++||-..     ..+...+...+..+.|.  ...|++++.|+.
T Consensus       182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~  254 (312)
T KOG0645|consen  182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDA  254 (312)
T ss_pred             CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcccceEeeeec--ccceEeccCCCE
Confidence              235788887775 69999999999999999999999999865     23333344788889998  678999999999


Q ss_pred             EEEEEcCCceeeeE---eecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCC
Q 010470          418 HNLFDIRSLEVCGS---LRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       418 i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~  470 (510)
                      |++|.-.....-..   +..........++++.|.|. .+.|++|++||.|++|.+.
T Consensus       255 i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  255 IRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            99997654211111   11111222235667999994 7899999999999999864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-32  Score=240.88  Aligned_cols=278  Identities=19%  Similarity=0.334  Sum_probs=235.2

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce----ec-------------c-cccccceeEEEEecCC
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS----ST-------------L-YGCLGSVLDLAITHDN  279 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~  279 (510)
                      ...+..|.-+|.||+++|++++.++++.+|+|.-|++.+++..    ..             - .+|...+.+++.+|||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4567789999999999999999999999999999999887632    11             1 2678889999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEE
Q 010470          280 RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALA  358 (510)
Q Consensus       280 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~  358 (510)
                      +||++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-. +.+.+++++.|++|++|++.....+.++.+|. .|.++.
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            9999999999999999999999999999999999999987 78889999999999999998877777777664 588888


Q ss_pred             EcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470          359 FSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR  438 (510)
Q Consensus       359 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  438 (510)
                      ...-++.+.+|+.|+++++|++..... ..+.++. +.+.|++|-. ...+++|+.+|.|.+|++.+.+++.+.......
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~-~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGE-GSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             hhcccceEEeccccceeEEEeccccce-eeeeCCC-CCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence            887888888899999999999944332 3344443 7899999975 467899999999999999999988887644433


Q ss_pred             eec--------CceeEEEcCCCCEEEEEcCCCeEEEEeCCCc----ceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          439 VAS--------NWSRSCISPDESYVAAGSADGSVYIWSISKA----DIVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       439 ~~~--------~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      ...        .++.++..|..+++++|+.+|.|++|-+..+    .++..++ -.+.|++++|+++|+.+++|
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence            332        6788999999999999999999999998877    4455555 56789999999999966554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-33  Score=254.03  Aligned_cols=262  Identities=21%  Similarity=0.285  Sum_probs=229.9

Q ss_pred             hhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccc
Q 010470          190 AKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS  269 (510)
Q Consensus       190 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  269 (510)
                      ..+-..|.+.+|+...         ...+..+.--.-||.+..|-+..+.+++|+.|..|+||+.+++..+..+..|...
T Consensus        29 la~LynG~V~IWnyet---------qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy   99 (794)
T KOG0276|consen   29 LAALYNGDVQIWNYET---------QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY   99 (794)
T ss_pred             EEeeecCeeEEEeccc---------ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc
Confidence            3445678888888554         2355667777789999999999999999999999999999999999999999999


Q ss_pred             eeEEEEecCCCEEEEEeCCCeEEEEEcCCC-CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470          270 VLDLAITHDNRSVIAASSSNNLYVWDVNSG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI  348 (510)
Q Consensus       270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  348 (510)
                      |.+++.+|...+++++|.|-.|++||.+.+ .+.++|.+|...|.+++|+|.+.+.+++++-|++|+||.+.+..+..++
T Consensus       100 IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl  179 (794)
T KOG0276|consen  100 IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL  179 (794)
T ss_pred             eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence            999999999999999999999999998754 5888999999999999999999999999999999999999999999999


Q ss_pred             eecC-ceeEEEEcCC--CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          349 IFHS-NCNALAFSMD--GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       349 ~~~~-~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      .+|. .|+|+++-+.  ..++++|+.|..|+|||..+..++.++.+|. ..|..+.|+|.-.++++|+.||+++||...+
T Consensus       180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt-~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT-NNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc-ccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            8874 5999999874  4699999999999999999999999999998 8999999999999999999999999999988


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY  465 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  465 (510)
                      .+...++......+.    +++-.+.++.+++|.++|.|.
T Consensus       259 y~lE~tLn~gleRvW----~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  259 YKLEKTLNYGLERVW----CIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             eehhhhhhcCCceEE----EEeecCCCCeEEEeccCCcEE
Confidence            877666655554443    366667777777777777544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.9e-32  Score=247.95  Aligned_cols=267  Identities=34%  Similarity=0.581  Sum_probs=234.4

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..++.+..+|.+.+|+...         ......+.+|...+.++.|+|+++++++++.||.|++|++.+++....+..|
T Consensus        22 ~~l~~~~~~g~i~i~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~   92 (289)
T cd00200          22 KLLATGSGDGTIKVWDLET---------GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH   92 (289)
T ss_pred             CEEEEeecCcEEEEEEeeC---------CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEecc
Confidence            3455666788888887543         1255677889999999999999999999999999999999988888888899


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      ...+.++.|+|++.++++++.+|.|.+||+.+++....+..|...+.++.|+| ++.++++++.+|.|.+||+++++.+.
T Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~  171 (289)
T cd00200          93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVA  171 (289)
T ss_pred             CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccce
Confidence            99999999999988888888899999999998888888989999999999999 67888888889999999999888888


Q ss_pred             eeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          347 TIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       347 ~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      .+..+. .+.++.|+|+++.+++++.+|.|.+||++.++.+..+..+. ..+.++.|+|++.++++++.+|.+++||+.+
T Consensus       172 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE-NGVNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC-CceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            887665 69999999999999999999999999999988888876665 7999999999988998888899999999998


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      +.....+..+...+    ..++|+|++.+|++++.||.|++|+
T Consensus       251 ~~~~~~~~~~~~~i----~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         251 GECVQTLSGHTNSV----TSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ceeEEEccccCCcE----EEEEECCCCCEEEEecCCCeEEecC
Confidence            88888877555444    4599999999999999999999996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.7e-32  Score=227.08  Aligned_cols=275  Identities=16%  Similarity=0.280  Sum_probs=228.9

Q ss_pred             cccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCC-Ccc-eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          222 NAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNT-GSL-SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       222 ~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      ....+.|.+++||| ...+++.||.||+|++|+++. |.. .+....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            34567899999999 555667999999999999976 343 344568999999999999999999999999999999999


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCC--EEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEE
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSR--HVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLR  376 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~  376 (510)
                      ++ ...+..|.++|.++.|.+ ...  .|++||.|.+|+.||++...++.++..+..+.++.+-  ..+++++..+..|.
T Consensus       104 ~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~  179 (347)
T KOG0647|consen  104 GQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIA  179 (347)
T ss_pred             CC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEE
Confidence            95 455667999999999987 444  7999999999999999999999999999988888764  56788888999999


Q ss_pred             EEECCCCcee-eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc--eeeeEeecCCCee-----ecCceeEEE
Q 010470          377 LWDIQTGKLL-SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL--EVCGSLRATGNRV-----ASNWSRSCI  448 (510)
Q Consensus       377 i~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~-----~~~~~~~~~  448 (510)
                      +|+++++... .....+-.-.++||+..++....+.|+-+|.+.|..+..+  ..-.+|+.|....     ...++.++|
T Consensus       180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F  259 (347)
T KOG0647|consen  180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF  259 (347)
T ss_pred             EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence            9999766433 3333333467999999999998899999999999988775  4445555554311     234677999


Q ss_pred             cCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          449 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      +|.-..|++.+.||++.+||-.....+.+...|..+|++++|+.+|.+++.+
T Consensus       260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            9999999999999999999988888888888899999999999999987754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-32  Score=259.16  Aligned_cols=266  Identities=23%  Similarity=0.389  Sum_probs=228.7

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG  268 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  268 (510)
                      +.++-..|.|..|+-..         ..++..|..|.|+|.+++|+|.+.++++||+|-.|+||+..+.+++.++.||-.
T Consensus        24 ILtslHsG~IQlWDYRM---------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD   94 (1202)
T KOG0292|consen   24 ILTSLHSGVIQLWDYRM---------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD   94 (1202)
T ss_pred             EEEeecCceeeeehhhh---------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc
Confidence            44555678888998544         458889999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-----
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-----  343 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----  343 (510)
                      .|..+.|++.-..++++|.|.+|+||+..+++++..+.||...|.|..|+| ....++++|-|.+|+|||+..-+     
T Consensus        95 YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~  173 (1202)
T KOG0292|consen   95 YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKA  173 (1202)
T ss_pred             eeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCC
Confidence            999999999999999999999999999999999999999999999999999 78899999999999999985210     


Q ss_pred             ------------------------Eeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCce--eeeeccccccc
Q 010470          344 ------------------------CVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAA  396 (510)
Q Consensus       344 ------------------------~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~  396 (510)
                                              ....+.+| ..|+-++|+|.-..|++|+.|..|++|.+...+.  +.+..+|. ..
T Consensus       174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~-nn  252 (1202)
T KOG0292|consen  174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY-NN  252 (1202)
T ss_pred             CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhccc-CC
Confidence                                    01122233 3489999999999999999999999999865442  33445665 89


Q ss_pred             EEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       397 i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      |.++-|+|..+++++.+.|+.|+|||+.+...+++++........    ++.+|..+++++|-+.| +.||.+.
T Consensus       253 Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~----laahP~lNLfAAgHDsG-m~VFkle  321 (1202)
T KOG0292|consen  253 VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWI----LAAHPELNLFAAGHDSG-MIVFKLE  321 (1202)
T ss_pred             cceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEE----EEecCCcceeeeecCCc-eEEEEEc
Confidence            999999999999999999999999999999999999877665543    88899999998887655 5555544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-33  Score=229.14  Aligned_cols=253  Identities=25%  Similarity=0.385  Sum_probs=229.7

Q ss_pred             CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      ...-+.+|.||.|.|.+..++.+...-++++.|-+-+|||.-+|..+.++ .|..-|..++|+.|.++|++|+.+..++|
T Consensus        48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrv  126 (334)
T KOG0278|consen   48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRV  126 (334)
T ss_pred             CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhh
Confidence            34567899999999999999999999999999999999999999998887 47889999999999999999999999999


Q ss_pred             EEcCCCC-eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC
Q 010470          294 WDVNSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID  372 (510)
Q Consensus       294 wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  372 (510)
                      ||++..+ +...+.+|.+.|..+.|.. ..+.|++++.|++|++||.+++..++++..+++++++.++++|++|.++. .
T Consensus       127 fdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-g  204 (334)
T KOG0278|consen  127 FDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-G  204 (334)
T ss_pred             hhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-C
Confidence            9998765 6778899999999999998 77888888999999999999999999999999999999999999887765 4


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEe-ecCCCeeecCceeEEEcCC
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL-RATGNRVASNWSRSCISPD  451 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~  451 (510)
                      +.|.+||..+...++.+..+  ..|.+..++|+...+++|+.|..++.||..++..+..+ .+|..++.+    +.|+|+
T Consensus       205 ssV~Fwdaksf~~lKs~k~P--~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc----VrFSPd  278 (334)
T KOG0278|consen  205 SSVKFWDAKSFGLLKSYKMP--CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC----VRFSPD  278 (334)
T ss_pred             ceeEEeccccccceeeccCc--cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEE----EEECCC
Confidence            67999999999999998877  78999999999999999999999999999999988885 666666654    999999


Q ss_pred             CCEEEEEcCCCeEEEEeCCCccee
Q 010470          452 ESYVAAGSADGSVYIWSISKADIV  475 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~~~~~  475 (510)
                      |...++||.||+|++|.+..++..
T Consensus       279 GE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  279 GELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CceeeccCCCceEEEEEecCCCch
Confidence            999999999999999998766543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.3e-32  Score=235.09  Aligned_cols=278  Identities=24%  Similarity=0.376  Sum_probs=234.1

Q ss_pred             HHHHHHHhhhcchHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCC---CEEEEeeCCCeEE
Q 010470          174 YEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNS---ARLISGGQDKSIK  250 (510)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~dg~i~  250 (510)
                      +.+.+..++.. ..-+.+++.||.+++|+..          .++.+.+.||.++|.+++|-...   ..|+++|.|.+++
T Consensus       104 hdDWVSsv~~~-~~~IltgsYDg~~riWd~~----------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~  172 (423)
T KOG0313|consen  104 HDDWVSSVKGA-SKWILTGSYDGTSRIWDLK----------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR  172 (423)
T ss_pred             chhhhhhhccc-CceEEEeecCCeeEEEecC----------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence            44555555543 4567899999999999944          45889999999999988885433   3599999999999


Q ss_pred             EEeCCCCcc----eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-------------------------CCe
Q 010470          251 LWDTNTGSL----SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-------------------------GRV  301 (510)
Q Consensus       251 iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------------------------~~~  301 (510)
                      +|..+.+..    +....||...|-++...++|..+++|+.|.+|.||+..+                         +.+
T Consensus       173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P  252 (423)
T KOG0313|consen  173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP  252 (423)
T ss_pred             EEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence            999887654    334459999999999999999999999999999999321                         235


Q ss_pred             eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470          302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  381 (510)
                      +.++.+|..+|.++.|++  ...+++++.|.+|+.||+.++..+..+..+...+|+.++|..+.|++|+.|..|++||.+
T Consensus       253 ~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR  330 (423)
T KOG0313|consen  253 LVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPR  330 (423)
T ss_pred             eEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCC
Confidence            667889999999999986  788999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCc---eeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCce-eeeEeecCCCeeecCceeEEEcCCCCEEE
Q 010470          382 TGK---LLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVA  456 (510)
Q Consensus       382 ~~~---~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  456 (510)
                      ++.   ....+.+|. ..|.++.|+|.. ..|++++.|+++++||+|+.. ++..+.+|...+.+    +.|. ++.+|+
T Consensus       331 ~~~gs~v~~s~~gH~-nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~----vdW~-~~~~Iv  404 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGHK-NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS----VDWN-EGGLIV  404 (423)
T ss_pred             CCCCceeEEeeecch-hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE----Eecc-CCceEE
Confidence            753   345666676 799999999965 468889999999999999876 88888888777754    5554 577999


Q ss_pred             EEcCCCeEEEEeCC
Q 010470          457 AGSADGSVYIWSIS  470 (510)
Q Consensus       457 ~~~~dg~i~iwd~~  470 (510)
                      +|+.|.+|+|+...
T Consensus       405 SGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  405 SGGADNKLRIFKGS  418 (423)
T ss_pred             eccCcceEEEeccc
Confidence            99999999999743

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-32  Score=224.48  Aligned_cols=277  Identities=26%  Similarity=0.387  Sum_probs=226.8

Q ss_pred             EEEEEecC-CCEEEEee-------CCCeEEEEeCCCCcceeccc--ccccceeEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 010470          229 ASILFEYN-SARLISGG-------QDKSIKLWDTNTGSLSSTLY--GCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVN  297 (510)
Q Consensus       229 ~~~~~s~~-~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~  297 (510)
                      .++.|||- .++|+++.       ..|++.|.++...+-+..+.  .-...+.+++|+++. +.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            56788882 23443332       36889999986444333332  346789999999864 578889999999999965


Q ss_pred             C-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcC-CCCEEEEecCCCc
Q 010470          298 S-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSM-DGQTIFSGHIDGN  374 (510)
Q Consensus       298 ~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~-~~~~l~~~~~dg~  374 (510)
                      . ..+++.++.|...|.++.|++.....++++|.|++|++|+...+..+.++.++.. |....|+| .++.+++++.||.
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            3 3588999999999999999998888999999999999999999999999988765 89999999 6789999999999


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCCc-eeeeEeecCCCeeecCceeEEEcCC-
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPD-  451 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~-  451 (510)
                      +++||++..-....+..|. ..+.++.|+. +.+.+++|+.|+.|++||+++. .++..+.+|...+..    +.|||. 
T Consensus       172 l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk----vk~Sph~  246 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK----VKFSPHH  246 (311)
T ss_pred             EEEEEecCCCceeEEEecc-ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE----EecCcch
Confidence            9999998755555587776 8999999997 5568899999999999999974 445666666666554    899995 


Q ss_pred             CCEEEEEcCCCeEEEEeCCC-cceeecccccCcCEEEEEEeCC-CCcEEEeeCCCeEEEcC
Q 010470          452 ESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGL-GKPLASADKNGVVCVWT  510 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd  510 (510)
                      ...|++++.|-+++|||... ...+.+...|+.-|.++.|++- +.++++++.|+.++||+
T Consensus       247 ~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  247 ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            56799999999999999875 4556677789999999999975 45899999999999996

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.7e-32  Score=261.04  Aligned_cols=270  Identities=27%  Similarity=0.532  Sum_probs=246.7

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec-ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST-LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR  302 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  302 (510)
                      |...+.+..|.  +.++++++.|++|.+||..++..+.. +.+|.+.|+++++..-+.++++|+.|.++++||..+|.+.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            56678899888  56999999999999999999998888 9999999999999887899999999999999999999999


Q ss_pred             EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470          303 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       303 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  381 (510)
                      +.+.+|.+.|.++...   +..+++|+.|.+|++|++.++.++..+. +...|+++.++  +.++++|+.||.|.+||+.
T Consensus       285 ~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             EEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence            9999999999999874   4788899999999999999999999999 45679999986  8999999999999999999


Q ss_pred             CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc-eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC
Q 010470          382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPDESYVAAGSA  460 (510)
Q Consensus       382 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  460 (510)
                      +++++..+.+|. ..|.++.+.+. ..+++|+.|+.|++||+++. +.+..+.+|...+.      .+...+++|++++.
T Consensus       360 ~~~cl~sl~gH~-~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~------~l~~~~~~Lvs~~a  431 (537)
T KOG0274|consen  360 TGKCLKSLSGHT-GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS------SLLLRDNFLVSSSA  431 (537)
T ss_pred             hceeeeeecCCc-ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc------ccccccceeEeccc
Confidence            999999999987 99999988766 89999999999999999999 88888888877763      35667899999999


Q ss_pred             CCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          461 DGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       461 dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ||+|++||..+++++..+.+ |.+.|..+++.  ...+++++.||.+++||
T Consensus       432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            99999999999999999998 67889988886  45789999999999997

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.9e-31  Score=256.09  Aligned_cols=267  Identities=20%  Similarity=0.307  Sum_probs=210.7

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc----------e---ecccccccceeEEEEec-CCCEEEEEeCCC
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL----------S---STLYGCLGSVLDLAITH-DNRSVIAASSSN  289 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----------~---~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  289 (510)
                      |-..|....+++++..+++++.+.....|+...+..          .   ..+.+|.+.|++++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            344566666777777777777777777776543321          1   23678999999999999 889999999999


Q ss_pred             eEEEEEcCCC-------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcC
Q 010470          290 NLYVWDVNSG-------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSM  361 (510)
Q Consensus       290 ~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~  361 (510)
                      +|++||+.++       .++..+.+|...|.+++|+|..+++|++++.|+.|++||+.++..+..+..+ ..|.+++|+|
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp  178 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL  178 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence            9999999765       3567889999999999999955689999999999999999999988888765 4599999999


Q ss_pred             CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe----cCCcEEEEEcCCcee-eeEeecCC
Q 010470          362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG----RDNLHNLFDIRSLEV-CGSLRATG  436 (510)
Q Consensus       362 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----~d~~i~i~d~~~~~~-~~~~~~~~  436 (510)
                      +|.+|++|+.||.|++||+++++.+..+..|....+..+.|.+++..+++++    .|+.|++||+++... ......+.
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~  258 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ  258 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence            9999999999999999999999998888877644556788999888887754    478999999987543 22222221


Q ss_pred             CeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCC
Q 010470          437 NRVASNWSRSCISPDESYVAAGS-ADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGL  493 (510)
Q Consensus       437 ~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~  493 (510)
                      .   ..+....|++++++|++|+ .||.|++||+.+++++..... +..++.+++|.|.
T Consensus       259 ~---~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        259 S---SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             C---CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            1   1223357899999999887 599999999999887766543 4556788888875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.4e-30  Score=270.57  Aligned_cols=257  Identities=18%  Similarity=0.285  Sum_probs=215.4

Q ss_pred             CCeEEEEeCCCCccee-----cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC----C----eeEeecCCCCce
Q 010470          246 DKSIKLWDTNTGSLSS-----TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----R----VRHTLTGHTDKV  312 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~----~~~~~~~~~~~v  312 (510)
                      +|.+++|+..+.....     .+..|.+.|.+++|+|+++++++|+.|+.|+||++...    .    +...+. +...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            6778888877654432     24468999999999999999999999999999997532    1    222333 35679


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeec
Q 010470          313 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVA  390 (510)
Q Consensus       313 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  390 (510)
                      .+++|+|..+.+|++++.||+|++||+.+++.+..+..| ..|.+++|+| ++.+|++|+.||.|++||++++..+..+.
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK  615 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            999999867889999999999999999999988888766 4599999997 78999999999999999999998888776


Q ss_pred             ccccccEEEEEEc-CCCCEEEEEecCCcEEEEEcCCce-eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          391 AHSLAAVTSISLS-RSGNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       391 ~~~~~~i~~i~~~-~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      .+  ..+.++.|+ ++|.+|++|+.||.|++||+++.. ....+.+|...+.    .+.|. ++.+|++++.|++|++||
T Consensus       616 ~~--~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~----~v~f~-~~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        616 TK--ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS----YVRFV-DSSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             cC--CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE----EEEEe-CCCEEEEEECCCEEEEEe
Confidence            54  679999995 579999999999999999998765 4555556655444    47786 788999999999999999


Q ss_pred             CCC------cceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          469 ISK------ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       469 ~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +..      ..++..+.+|...+..++|+|++.+|++|+.||.|++|+
T Consensus       689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            874      356778889999999999999999999999999999996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-32  Score=240.86  Aligned_cols=275  Identities=22%  Similarity=0.332  Sum_probs=232.8

Q ss_pred             ccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          225 EGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       225 ~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      .+.|++++|+|... -+|+.+ .-.+.||+..+.....++......|.+++|..||+++++|+..|.|+|||..+...+.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence            35799999999544 355544 3579999999888888888888999999999999999999999999999977766788


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCC-CCEEEEecCCCcEEEEECC
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMD-GQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~-~~~l~~~~~dg~i~i~d~~  381 (510)
                      .+.+|..+|..+.|+|.++..+++|+.|+.+++||+.+......+..+.. |.|.+|+|- +..+++|+.||.|++||++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            89999999999999998999999999999999999998887556666644 999999994 5588899999999999999


Q ss_pred             CC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce-eeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          382 TG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       382 ~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      .. ..+..+..  ..+|.++.+-|.|..+++++. +.+++||+-+|. .+..+..|...+.    |+++..++..|++|+
T Consensus       185 ~~~~~v~elnh--g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVT----cL~l~s~~~rLlS~s  257 (487)
T KOG0310|consen  185 SLTSRVVELNH--GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVT----CLRLASDSTRLLSGS  257 (487)
T ss_pred             cCCceeEEecC--CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEE----EEEeecCCceEeecc
Confidence            87 44444443  389999999999999998864 589999998554 4444433555554    599999999999999


Q ss_pred             CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          460 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       460 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      -||.|++||+.+.+.+..+. ..++|.+++.+|++..++.|..||.+.+
T Consensus       258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             cccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence            99999999999999998887 5789999999999999999999998754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=8.9e-31  Score=229.09  Aligned_cols=250  Identities=18%  Similarity=0.271  Sum_probs=218.8

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  294 (510)
                      .+...+|+||...|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..+.
T Consensus       251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fs  330 (506)
T KOG0289|consen  251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFS  330 (506)
T ss_pred             hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEE
Confidence            45677899999999999999999999999999999999998888888889999999999999999999999999999999


Q ss_pred             EcCCCCeeEeecC--CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecC
Q 010470          295 DVNSGRVRHTLTG--HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       295 d~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~  371 (510)
                      |+.++..+.....  ..-.+++..|+| ++.+|.+|..||.|+|||+.++..+..|.+| ++|..++|+.+|-++++++.
T Consensus       331 d~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad  409 (506)
T KOG0289|consen  331 DISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD  409 (506)
T ss_pred             EccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence            9999998776653  224589999999 9999999999999999999999988888887 45999999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC--CceeeeEeecCCCeeecCceeEEEc
Q 010470          372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR--SLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                      |+.|++||+|..+...++......++.++.|++.|.+|+.++.+=.|++++-.  ++..+..+..+.+..    +.+.|.
T Consensus       410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s----t~v~Fg  485 (506)
T KOG0289|consen  410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS----TGVRFG  485 (506)
T ss_pred             CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccc----ceeeec
Confidence            99999999999998888888776789999999999999999887777777643  345555554444333    348899


Q ss_pred             CCCCEEEEEcCCCeEEEEeC
Q 010470          450 PDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       450 ~~~~~l~~~~~dg~i~iwd~  469 (510)
                      ...+++++++.|..++++.+
T Consensus       486 ~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  486 EHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccceEEeeccchhheEEeec
Confidence            99999999999998888764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-31  Score=225.85  Aligned_cols=289  Identities=20%  Similarity=0.377  Sum_probs=244.3

Q ss_pred             CCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEE
Q 010470          213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLY  292 (510)
Q Consensus       213 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  292 (510)
                      ........+.||..+|..++.......+.+++.|.+.+||.+++|.++.++.||.+.|+++.|++.+.++++++.|++..
T Consensus       136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH  215 (481)
T KOG0300|consen  136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH  215 (481)
T ss_pred             eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence            34556778999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEc------CCC----------------------------------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCC
Q 010470          293 VWDV------NSG----------------------------------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR  332 (510)
Q Consensus       293 iwd~------~~~----------------------------------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg  332 (510)
                      ||..      ...                                  .++..+.+|...|.+..|.. ++..+++++.|.
T Consensus       216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDR  294 (481)
T ss_pred             HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccc
Confidence            9962      110                                  14556789999999999987 899999999999


Q ss_pred             cEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEEE
Q 010470          333 TLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIIL  410 (510)
Q Consensus       333 ~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~  410 (510)
                      +..+||+++|.++..+.+|. ..+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|. ..|+++.|..+ ..++
T Consensus       295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt-dtVTS~vF~~d-d~vV  372 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT-DTVTSVVFNTD-DRVV  372 (481)
T ss_pred             cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc-cceeEEEEecC-Ccee
Confidence            99999999999999998885 4888889999999999999999999999854 3455667776 89999999875 5688


Q ss_pred             EEecCCcEEEEEcCCcee-eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc-----cccCcC
Q 010470          411 TSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-----KEHTAP  484 (510)
Q Consensus       411 ~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~  484 (510)
                      +|+.|.+|++||+++... +.+++.     .++++.++++..+..|+.--++..|++||++... +..+     ++|..-
T Consensus       373 SgSDDrTvKvWdLrNMRsplATIRt-----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRM  446 (481)
T KOG0300|consen  373 SGSDDRTVKVWDLRNMRSPLATIRT-----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRM  446 (481)
T ss_pred             ecCCCceEEEeeeccccCcceeeec-----CCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCccccccccee
Confidence            999999999999997653 333332     2344558899989999999999999999987544 3333     468999


Q ss_pred             EEEEEEeCCCC--cEEEeeCCCeEEEcC
Q 010470          485 VLSCSWSGLGK--PLASADKNGVVCVWT  510 (510)
Q Consensus       485 v~~~~~~~~~~--~l~s~~~dg~i~iwd  510 (510)
                      |+|++|..+-.  -|++||.|..+.-|.
T Consensus       447 V~c~AW~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  447 VTCCAWLEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             eeeeeccccCcccccccccccceeeeeE
Confidence            99999986543  588999999988874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.1e-32  Score=256.54  Aligned_cols=246  Identities=21%  Similarity=0.393  Sum_probs=208.5

Q ss_pred             eccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC--------------------------------C--------
Q 010470          261 STLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS--------------------------------G--------  299 (510)
Q Consensus       261 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------------------------------~--------  299 (510)
                      ..+. .|.+.|+++.|++||+||++|+.||.|+||.+..                                .        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            4455 8999999999999999999999999999998754                                0        


Q ss_pred             --------------------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEE
Q 010470          300 --------------------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAF  359 (510)
Q Consensus       300 --------------------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~  359 (510)
                                          ++++.+.||.+.|.++.|+.  +++|++++.|.+|++|++....|+..|.+..-|+|++|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF  417 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence                                23345779999999999986  78999999999999999999999999999999999999


Q ss_pred             cC-CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC-
Q 010470          360 SM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN-  437 (510)
Q Consensus       360 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-  437 (510)
                      +| |.++|++|+-||.|+||++...+.+.-...+  .-|++++|.|+|++.++|+.+|.+++|+....+....+..... 
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            99 8899999999999999999877766655555  7899999999999999999999999999998777655542211 


Q ss_pred             ---eeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcceeecccccC--cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          438 ---RVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKADIVRTLKEHT--APVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       438 ---~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                         .....++.+.|.|. ...|++.+.|..|+|||..+..++..++++.  +.-....|+.||++|++++.|..|++|+
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence               11124566777763 3357777889999999999999999998743  2345678999999999999999999995

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-31  Score=246.33  Aligned_cols=271  Identities=19%  Similarity=0.287  Sum_probs=233.7

Q ss_pred             EEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC-
Q 010470          229 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG-  307 (510)
Q Consensus       229 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-  307 (510)
                      +-+.|+ ..+.|++|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ 
T Consensus       181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~  258 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS  258 (484)
T ss_pred             hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence            345677 344677665 45899999999987665555589999999999999999999999999999999999999988 


Q ss_pred             CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee-eeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 010470          308 HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT-IIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL  385 (510)
Q Consensus       308 ~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~  385 (510)
                      |...|.+++|.   ...+.+|+.||.|..+|++....... +..| ..|..+.|++|+.++++|+.|+.+.|||.....+
T Consensus       259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence            99999999996   58899999999999999998765554 4444 4599999999999999999999999999988888


Q ss_pred             eeeecccccccEEEEEEcCC-CCEEEEEe--cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEE--EcC
Q 010470          386 LSEVAAHSLAAVTSISLSRS-GNIILTSG--RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA--GSA  460 (510)
Q Consensus       386 ~~~~~~~~~~~i~~i~~~~~-~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~  460 (510)
                      ...+..|. ..|..++|+|- ..+||+|+  .|++|++||..++..+..+....     .++.+.|++..+-|++  |..
T Consensus       336 ~~~~~~H~-aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs-----QVcsL~Wsk~~kEi~sthG~s  409 (484)
T KOG0305|consen  336 KFTFTEHT-AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS-----QVCSLIWSKKYKELLSTHGYS  409 (484)
T ss_pred             cEEEeccc-eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC-----ceeeEEEcCCCCEEEEecCCC
Confidence            88998887 99999999995 55777754  68999999999998877765443     3445899999877666  445


Q ss_pred             CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          461 DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       461 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++.|.||++.+.+.+..+.+|...|..++++|||..+++|+.|.++++|+
T Consensus       410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            77899999999999999999999999999999999999999999999995

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=224.96  Aligned_cols=293  Identities=21%  Similarity=0.383  Sum_probs=239.8

Q ss_pred             CCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeE
Q 010470          212 TVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNL  291 (510)
Q Consensus       212 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  291 (510)
                      ..|....+++....  -.|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|++++|++||+.|++++.|..|
T Consensus        12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si   89 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI   89 (405)
T ss_pred             cChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence            45666666665444  8899999999999999999999999999999989999999999999999999999999999999


Q ss_pred             EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-------CceeEEEEcCCCC
Q 010470          292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-------SNCNALAFSMDGQ  364 (510)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~i~~i~~~~~~~  364 (510)
                      .+||+..|.+++.+. ...+|+...|+|.+.+.+++.-.+..-.+.++..+  ++.+...       ....+..|.+.|+
T Consensus        90 ~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~  166 (405)
T KOG1273|consen   90 KLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGK  166 (405)
T ss_pred             EEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCC
Confidence            999999999988887 67899999999987777777666666666666542  2222211       1134556889999


Q ss_pred             EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce-------eeeEeecCCC
Q 010470          365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE-------VCGSLRATGN  437 (510)
Q Consensus       365 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~  437 (510)
                      ++++|...|.+.+||..+.+++..+.......|..|.++..|+.|+..+.|..|+.|+++.--       +....+....
T Consensus       167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv  246 (405)
T KOG1273|consen  167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV  246 (405)
T ss_pred             EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence            999999999999999999999988887666789999999999999999999999999987321       1100111111


Q ss_pred             eeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCcceeecccccC-cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          438 RVASNWSRSCISPDESYVAAGSA-DGSVYIWSISKADIVRTLKEHT-APVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       438 ~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .....|.+++||.+|.|+++|+. -..++||....|.+++.+.|.. .....+.|+|-...+++. ..|.+++|.
T Consensus       247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence            22346788999999999998875 3579999999999999998866 567889999998888887 778999994

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-31  Score=224.13  Aligned_cols=267  Identities=18%  Similarity=0.344  Sum_probs=229.4

Q ss_pred             CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCC--EEEEEeCCCeE
Q 010470          214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR--SVIAASSSNNL  291 (510)
Q Consensus       214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i  291 (510)
                      ...+.+.+.+|.++|++++.+  |.++|+||.|-+|+|||+.....+..+-.|.+.|+++.|.++-.  .|++|+.||.|
T Consensus        32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            345678899999999999987  88999999999999999999999999999999999999998876  89999999999


Q ss_pred             EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC
Q 010470          292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  371 (510)
                      .+|+.....++..+++|.+.|+.++++| .+.+.++.+.|+.++.||+-+|+.-.........+.+.|+|.|.+++.+..
T Consensus       110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             EEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec
Confidence            9999999999999999999999999999 889999999999999999999998888877777788999999999998887


Q ss_pred             CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      + .|-+|.+.+.+....+...  ..+.++.|. ++..+++|+.|+.|.+||..+..+...+.+|.+.+..-.  ..-.|+
T Consensus       189 ~-~i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~--~~~~~~  262 (362)
T KOG0294|consen  189 N-KIDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA--SYTNPE  262 (362)
T ss_pred             c-EEEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeE--EEecCC
Confidence            6 6999999887776666654  456777765 567899999999999999999999999999998887511  224678


Q ss_pred             CCEEEEEcCCCeEEEEeCCCc-----ceeecccccCcCEEEEEE
Q 010470          452 ESYVAAGSADGSVYIWSISKA-----DIVRTLKEHTAPVLSCSW  490 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~  490 (510)
                      +.||++.|+||.|+|||+...     +++..+.. ...++|+..
T Consensus       263 ~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  263 HEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             ceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence            999999999999999998865     34444432 445556543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.6e-31  Score=258.22  Aligned_cols=283  Identities=18%  Similarity=0.283  Sum_probs=238.6

Q ss_pred             cccc-cceEEEEEecCCCEEEEee--CCCeEEEEeCCC------------CcceecccccccceeEEEEecCCCEEEEEe
Q 010470          222 NAHE-GGCASILFEYNSARLISGG--QDKSIKLWDTNT------------GSLSSTLYGCLGSVLDLAITHDNRSVIAAS  286 (510)
Q Consensus       222 ~~h~-~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  286 (510)
                      -+|. ..|.++..+|||..++|||  .||.++||+.+.            .+.+.+...|.+.|+|+.|+|||.+|++|+
T Consensus         9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence            3454 4699999999999999999  899999998742            233556678999999999999999999999


Q ss_pred             CCCeEEEEEcCC------------------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470          287 SSNNLYVWDVNS------------------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI  348 (510)
Q Consensus       287 ~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  348 (510)
                      .|+.|.||....                  .+.+..+.+|.+.|..+.|+| ++.++++++.|++|.+||..+...+..+
T Consensus        89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl  167 (942)
T KOG0973|consen   89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVL  167 (942)
T ss_pred             CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeee
Confidence            999999998762                  135677889999999999999 8999999999999999999999999999


Q ss_pred             eecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-----cccEEEEEEcCCCCEEEEEec----CCcE
Q 010470          349 IFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-----LAAVTSISLSRSGNIILTSGR----DNLH  418 (510)
Q Consensus       349 ~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~----d~~i  418 (510)
                      ..|. .|..+.|.|-|++|++-+.|++|++|++.+....+.+..+.     ...+..+.|||||.+|++...    -.++
T Consensus       168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~  247 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI  247 (942)
T ss_pred             ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence            8875 59999999999999999999999999977765665554432     245788999999999998642    3478


Q ss_pred             EEEEcCCceeeeEeecCCCeeecCceeEEEcCC------C-------C----EEEEEcCCCeEEEEeCCCcceeecccc-
Q 010470          419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPD------E-------S----YVAAGSADGSVYIWSISKADIVRTLKE-  480 (510)
Q Consensus       419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------~-------~----~l~~~~~dg~i~iwd~~~~~~~~~~~~-  480 (510)
                      .|.+-.+.+.-..+-+|..++..    +.|+|.      +       +    .+|+|+.|++|.||.....+++..+.. 
T Consensus       248 ~IieR~tWk~~~~LvGH~~p~ev----vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l  323 (942)
T KOG0973|consen  248 AIIERGTWKVDKDLVGHSAPVEV----VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL  323 (942)
T ss_pred             EEEecCCceeeeeeecCCCceEE----EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh
Confidence            89988888888888888887665    777652      1       1    578899999999999988887766543 


Q ss_pred             cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          481 HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       481 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ...+|.+++|+|||-.|+.|+.||+|.+.
T Consensus       324 f~~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  324 FNKSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             hcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence            56789999999999999999999999874

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=219.72  Aligned_cols=242  Identities=25%  Similarity=0.384  Sum_probs=220.4

Q ss_pred             ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE--eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH--TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      +.+.+|...|.+++|+.+|..+++|+.|+++.+|++...+...  ...+|.+.|-.++|+|..+..+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4567899999999999999999999999999999998776444  34689999999999998999999999999999999


Q ss_pred             CCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcE
Q 010470          339 LHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH  418 (510)
Q Consensus       339 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  418 (510)
                      ++.++++..+.....-.-++|+|+|.++++++.|..|.+.|.++.+........  ..+.-++|+.++++++.....|+|
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSNDLFFLTNGLGCV  171 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCCCEEEEecCCceE
Confidence            999999999988877677999999999999999999999999998887776655  678889999889999999899999


Q ss_pred             EEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEE
Q 010470          419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA  498 (510)
Q Consensus       419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  498 (510)
                      .|......+++..+..|.....+    +.|+|+|+|||+|+.|-.+.+||+..--+++.+..+.-||..++||.||++|+
T Consensus       172 ~ILsypsLkpv~si~AH~snCic----I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  172 EILSYPSLKPVQSIKAHPSNCIC----IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             EEEeccccccccccccCCcceEE----EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence            99999999999999998866554    89999999999999999999999999989999999999999999999999999


Q ss_pred             EeeCCCeEEE
Q 010470          499 SADKNGVVCV  508 (510)
Q Consensus       499 s~~~dg~i~i  508 (510)
                      +++.|..|-|
T Consensus       248 SaSEDh~IDI  257 (313)
T KOG1407|consen  248 SASEDHFIDI  257 (313)
T ss_pred             ccCccceEEe
Confidence            9999988754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.6e-31  Score=221.16  Aligned_cols=288  Identities=20%  Similarity=0.298  Sum_probs=218.3

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce--ec--ccccccceeEEEEecCCCEEEEEe-CCCeE
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS--ST--LYGCLGSVLDLAITHDNRSVIAAS-SSNNL  291 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i  291 (510)
                      ....++||.+.|++++|+.||++|+|++.|++|+||++......  +.  ..-..+..+.+.|.||-+-+++.. ...++
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            45678999999999999999999999999999999999763221  11  111223568899999988776665 55689


Q ss_pred             EEEEcCC---CCeeEe---------ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEE
Q 010470          292 YVWDVNS---GRVRHT---------LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALA  358 (510)
Q Consensus       292 ~iwd~~~---~~~~~~---------~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~  358 (510)
                      ++|.+..   |.....         -..|.-.+..+-... ++.+|++++.|..|.+|+++ |+.+..+... ..-...+
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence            9998743   221111         123555666666655 78899999999999999998 8888887655 3466788


Q ss_pred             EcCCCCEEEEecCCCcEEEEECC---CC-----ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC-----
Q 010470          359 FSMDGQTIFSGHIDGNLRLWDIQ---TG-----KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS-----  425 (510)
Q Consensus       359 ~~~~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-----  425 (510)
                      ++|+|+++++++..-.|.+|.+-   .|     ..+..+.+|. +.|..++|+|+...+++.+.||.++|||+.-     
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~-saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~  314 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG  314 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch-hheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence            99999999999998999999863   22     3456677777 8999999999999999999999999999852     


Q ss_pred             --ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeC
Q 010470          426 --LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       426 --~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~  502 (510)
                        .+.+.....+..........+.++|+|+.|+.+.. ..+.+|...+|+....+.. |...|.+++|+++|+++++|| 
T Consensus       315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-  392 (420)
T KOG2096|consen  315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-  392 (420)
T ss_pred             CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-
Confidence              12222222111122223346899999999988764 4699999999988777754 999999999999999999997 


Q ss_pred             CCeEEEc
Q 010470          503 NGVVCVW  509 (510)
Q Consensus       503 dg~i~iw  509 (510)
                      |..++++
T Consensus       393 dr~vrv~  399 (420)
T KOG2096|consen  393 DRYVRVI  399 (420)
T ss_pred             ceeeeee
Confidence            4466553

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.2e-33  Score=233.13  Aligned_cols=277  Identities=20%  Similarity=0.311  Sum_probs=241.7

Q ss_pred             chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc
Q 010470          185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY  264 (510)
Q Consensus       185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  264 (510)
                      .-+.+++++.||.+.+|+-..... ...+..+....|--|..+|.|+.||.|...+++|+.||.|+||.+.+|.+++.+.
T Consensus       224 DgqyLvsgSvDGFiEVWny~~GKl-rKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd  302 (508)
T KOG0275|consen  224 DGQYLVSGSVDGFIEVWNYTTGKL-RKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD  302 (508)
T ss_pred             CCceEeeccccceeeeehhccchh-hhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence            456688999999999998443211 1222333444566788999999999999999999999999999999999999987


Q ss_pred             -ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470          265 -GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY  343 (510)
Q Consensus       265 -~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~  343 (510)
                       .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+.+|...|+...|.+ +++.+++++.||+|++|+..+..
T Consensus       303 rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Ktte  381 (508)
T KOG0275|consen  303 RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTE  381 (508)
T ss_pred             hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchh
Confidence             8999999999999999999999999999999999999999999999999999998 89999999999999999999999


Q ss_pred             EeeeeeecC---ceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeecccc--cccEEEEEEcCCCCEEEEEecCCc
Q 010470          344 CVNTIIFHS---NCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGNIILTSGRDNL  417 (510)
Q Consensus       344 ~~~~~~~~~---~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~  417 (510)
                      |+.++...+   +++++-..| +...++++....+|++.++ .|+.++.+....  .+...+.+++|.|.++++.+.|+.
T Consensus       382 C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v  460 (508)
T KOG0275|consen  382 CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV  460 (508)
T ss_pred             hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE
Confidence            999997654   478888777 5668889999999999997 688888886543  356777889999999999999999


Q ss_pred             EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      ++.|...++..-.++..+...+..    ++-+|..+.|++-+.||.+++|.
T Consensus       461 lYCF~~~sG~LE~tl~VhEkdvIG----l~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  461 LYCFSVLSGKLERTLPVHEKDVIG----LTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEEeecCceeeeeecccccccc----cccCcccchhhhhcccchhhhcC
Confidence            999999999999888887766655    78899999999999999999995

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=2.7e-30  Score=248.99  Aligned_cols=248  Identities=18%  Similarity=0.273  Sum_probs=198.2

Q ss_pred             eeCCCeEEEEeCCCCcceecccccccceeEEEEecC-CCEEEEEeCCCeEEEEEcCCCC--------eeEeecCCCCceE
Q 010470          243 GGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWDVNSGR--------VRHTLTGHTDKVC  313 (510)
Q Consensus       243 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~  313 (510)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||.|+|||+.++.        ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            667899999998887788889999999999999997 7899999999999999997642        3456788999999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc
Q 010470          314 AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS  393 (510)
Q Consensus       314 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  393 (510)
                      +++|+|....++++++.|++|++||++++..+..+..+..+.+++|+|+|.+|++++.|+.|++||+++++.+..+..|.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence            99999954456789999999999999999887777766779999999999999999999999999999999998888776


Q ss_pred             cccEE-----EEEEcCCCCEEEEEecCC----cEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe
Q 010470          394 LAAVT-----SISLSRSGNIILTSGRDN----LHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS  463 (510)
Q Consensus       394 ~~~i~-----~i~~~~~~~~l~~~~~d~----~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~  463 (510)
                       +.+.     ...|++++.+|++++.++    .|+|||+++ ..++..+.......  .+......++|.++++|+.|+.
T Consensus       210 -g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~--~L~p~~D~~tg~l~lsGkGD~t  286 (568)
T PTZ00420        210 -GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA--PLIPHYDESTGLIYLIGKGDGN  286 (568)
T ss_pred             -CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc--ceEEeeeCCCCCEEEEEECCCe
Confidence             4332     234568999999988774    799999995 45554443322111  1111233556899999999999


Q ss_pred             EEEEeCCCcce--eecccccCcCEEEEEEeCCC
Q 010470          464 VYIWSISKADI--VRTLKEHTAPVLSCSWSGLG  494 (510)
Q Consensus       464 i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~  494 (510)
                      |++|++..+..  +..+. +..++.+++|.|..
T Consensus       287 Ir~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        287 CRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence            99999987643  22222 56788999999974

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-32  Score=235.39  Aligned_cols=271  Identities=20%  Similarity=0.304  Sum_probs=225.5

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCL  267 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~  267 (510)
                      +++++.|.+.-+|....      ..-.+..+++.||..+|..+.||||.++|++|+.|..+.+||+.+|.....+. ++.
T Consensus       239 LAsaSkD~Taiiw~v~~------d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~  312 (519)
T KOG0293|consen  239 LASASKDSTAIIWIVVY------DVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLG  312 (519)
T ss_pred             EeeccCCceEEEEEEec------CcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcC
Confidence            44555555555554221      12256789999999999999999999999999999999999999999877664 456


Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC-CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH-TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      ..+.+++|.|||..+++|+.|+.+..||++ |.......+. ...|.++++.+ ++.++++.+.|..|++++..+.....
T Consensus       313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~  390 (519)
T KOG0293|consen  313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRG  390 (519)
T ss_pred             CCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhc
Confidence            899999999999999999999999999987 4444445443 35699999999 88899998999999999998887777


Q ss_pred             eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccccc-EEEEEEcC-CCCEEEEEecCCcEEEEEcC
Q 010470          347 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA-VTSISLSR-SGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~i~~~~-~~~~l~~~~~d~~i~i~d~~  424 (510)
                      .+..+.++++++++.+|+++++.-.+..+++||+...+.+..+.++..+. +-.-+|.- +..++++|+.|+.|+||+..
T Consensus       391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~  470 (519)
T KOG0293|consen  391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI  470 (519)
T ss_pred             cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence            88888999999999999999999999999999999888888888876332 22334443 55799999999999999999


Q ss_pred             CceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCC
Q 010470          425 SLEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~  471 (510)
                      +++++..+.+|...+.+    ++|+|. ...+|++++||+|+||....
T Consensus       471 sgkll~~LsGHs~~vNc----VswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  471 SGKLLAVLSGHSKTVNC----VSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCceeEeecCCcceeeE----EecCCCCHHHhhccCCCCeEEEecCCc
Confidence            99999999999877765    999994 56799999999999998653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.6e-30  Score=218.24  Aligned_cols=273  Identities=19%  Similarity=0.281  Sum_probs=227.4

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      ....|+.|.|+|.+..|++++.||++++||+....... ...|..++.+++|.+ ...+++|+.||.|+.+|++++... 
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~-~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL-KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh-heecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence            35689999999999999999999999999998775443 346899999999986 566999999999999999987654 


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG  383 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  383 (510)
                      .+..|..+|.|+.+++ ..+.+++||.|++|++||.+.......+.....|.++..  .|+.|++|+.+..|.+||+++.
T Consensus        89 ~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence            4456999999999998 788999999999999999998777777776777887776  5889999999999999999987


Q ss_pred             ceeeeecc-cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc----eeeeEeecCC-----CeeecCceeEEEcCCCC
Q 010470          384 KLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL----EVCGSLRATG-----NRVASNWSRSCISPDES  453 (510)
Q Consensus       384 ~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~-----~~~~~~~~~~~~s~~~~  453 (510)
                      ........ .-...++|+++.|++.-+++++-||.|.+=.+...    .....|+.|.     ..+..+++.++|+|--.
T Consensus       166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~  245 (323)
T KOG1036|consen  166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG  245 (323)
T ss_pred             cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence            65543322 22367999999999999999999999988666543    3333444443     33445678899999999


Q ss_pred             EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470          454 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       454 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  502 (510)
                      .|++|+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus       246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            9999999999999999999999999888888999999999999998864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-31  Score=234.51  Aligned_cols=247  Identities=22%  Similarity=0.370  Sum_probs=215.6

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEE
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWD  295 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd  295 (510)
                      ...++.-....|.++.|-.||++|++|...|.|+|||..+...+..+.+|..+|..+.|+|.++ .+++|+.|+.+++||
T Consensus        60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            3445566778899999999999999999999999999887778899999999999999999765 456677788999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeecCceeEEEEcCCCCEEEEecCCCc
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN  374 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~  374 (510)
                      +.+......+.+|++.|.|.+|+|.++.+++|||+||.|++||++.. ..+..+.+..+|..+.+-|.|..|++++. ..
T Consensus       140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~  218 (487)
T KOG0310|consen  140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NS  218 (487)
T ss_pred             cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-Ce
Confidence            99988877899999999999999988889999999999999999987 77888888899999999999999998875 48


Q ss_pred             EEEEECCCCcee-eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          375 LRLWDIQTGKLL-SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       375 i~i~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      |++||+-+|... .....|+ ..|+|+++..++..|++++-|+.+++||+.+.+.+..+..++...     +++++|+++
T Consensus       219 vkVWDl~~G~qll~~~~~H~-KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvL-----siavs~dd~  292 (487)
T KOG0310|consen  219 VKVWDLTTGGQLLTSMFNHN-KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVL-----SIAVSPDDQ  292 (487)
T ss_pred             EEEEEecCCceehhhhhccc-ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccccee-----eEEecCCCc
Confidence            999999866544 4444455 899999999999999999999999999999999988887665544     389999999


Q ss_pred             EEEEEcCCCeEEEEeCC
Q 010470          454 YVAAGSADGSVYIWSIS  470 (510)
Q Consensus       454 ~l~~~~~dg~i~iwd~~  470 (510)
                      .++.|..||.+.+-+..
T Consensus       293 t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  293 TVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             eEEEecccceeeeehhh
Confidence            99999999988877543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.7e-32  Score=231.31  Aligned_cols=271  Identities=20%  Similarity=0.343  Sum_probs=229.7

Q ss_pred             chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc
Q 010470          185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY  264 (510)
Q Consensus       185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  264 (510)
                      .+..+++|+.||.+++|+...         ..|..+|.+|.|.|..++++.  ..++++|.|.+|+.|.++. .+..++.
T Consensus        78 ~ls~~aSGs~DG~VkiWnlsq---------R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~til  145 (433)
T KOG0268|consen   78 KLSTVASGSCDGEVKIWNLSQ---------RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL  145 (433)
T ss_pred             hhhhhhccccCceEEEEehhh---------hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeee
Confidence            557789999999999999654         458899999999999999987  6889999999999999874 4555554


Q ss_pred             ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470          265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC  344 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  344 (510)
                      + .+.+..+.-+..+..+++++.  .|.|||.....++..+....+.|.++.|+|....+|++|+.|+.|.+||++.+.+
T Consensus       146 g-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P  222 (433)
T KOG0268|consen  146 G-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP  222 (433)
T ss_pred             c-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence            3 556677777777777888876  5999999989999999999999999999998889999999999999999999999


Q ss_pred             eeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          345 VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       345 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      +..+......+.|+|+|.+-.|++|+.|.+++.||++... ++.....|. +.|.+++|||.|+-|++|+.|.+|+||..
T Consensus       223 l~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv-sAV~dVdfsptG~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  223 LKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV-SAVMDVDFSPTGQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             cceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccc-eeEEEeccCCCcchhccccccceEEEeec
Confidence            9999999999999999988889999999999999999865 444555555 89999999999999999999999999999


Q ss_pred             CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470          424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      +.+.....+.  .... ..+.++.||.|.+||++||+|+.|++|.....+.
T Consensus       302 ~~~~SRdiYh--tkRM-q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  302 NHGHSRDIYH--TKRM-QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             CCCcchhhhh--Hhhh-heeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence            8665433322  1111 2345689999999999999999999998765443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=6.3e-29  Score=199.40  Aligned_cols=288  Identities=16%  Similarity=0.259  Sum_probs=232.7

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC------C-----cc----eecccccccceeEEEEecCCCE
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT------G-----SL----SSTLYGCLGSVLDLAITHDNRS  281 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~------~-----~~----~~~~~~~~~~v~~~~~~~~~~~  281 (510)
                      ++..+. ....|.+++|+|.|.+.++|+...+.+|.-...      +     .+    .+.-+.|.+.|.|.+|+|+|.+
T Consensus        25 ~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel  103 (350)
T KOG0641|consen   25 AINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL  103 (350)
T ss_pred             EEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence            333333 345799999999999999999999998875432      1     01    1223468899999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCCC-----eeEeecCCCCceEEEEEecC---CCCEEEEEeC-CCcEEEEECCCCeEeeeeeecC
Q 010470          282 VIAASSSNNLYVWDVNSGR-----VRHTLTGHTDKVCAVDVSKI---SSRHVVSAAY-DRTLKVWDLHKGYCVNTIIFHS  352 (510)
Q Consensus       282 l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~---~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~  352 (510)
                      +++|++|.+|++.-++...     .-..+..|.+.|..++|...   .+.++++++. |..|++-|...|+..+.+.++.
T Consensus       104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght  183 (350)
T KOG0641|consen  104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT  183 (350)
T ss_pred             EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence            9999999999998765432     23456779999999999752   3456776653 6778888999999999888886


Q ss_pred             c-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc------ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          353 N-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH------SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       353 ~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      . |.++ ++-+|-++++|+.|.+|++||++-...+..+...      ..+.|.++++.|.|++|++|..|....+||++.
T Consensus       184 ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg  262 (350)
T KOG0641|consen  184 GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG  262 (350)
T ss_pred             ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence            5 4433 3447899999999999999999988888776432      125799999999999999999999999999999


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc----ceeecccccCcCEEEEEEeCCCCcEEEee
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA----DIVRTLKEHTAPVLSCSWSGLGKPLASAD  501 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  501 (510)
                      ++.++.+..|...+.+    +.|+|...|+.+|+.|..|++-|+...    -++.....|...+..+.|+|..-.+++.+
T Consensus       263 ~r~iq~f~phsadir~----vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisss  338 (350)
T KOG0641|consen  263 GRMIQRFHPHSADIRC----VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS  338 (350)
T ss_pred             CceeeeeCCCccceeE----EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeecc
Confidence            9999999888776655    999999999999999999999998642    12334456999999999999999999999


Q ss_pred             CCCeEEEcC
Q 010470          502 KNGVVCVWT  510 (510)
Q Consensus       502 ~dg~i~iwd  510 (510)
                      .|.++.+|.
T Consensus       339 adkt~tlwa  347 (350)
T KOG0641|consen  339 ADKTATLWA  347 (350)
T ss_pred             CcceEEEec
Confidence            999999993

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.4e-29  Score=240.58  Aligned_cols=228  Identities=15%  Similarity=0.251  Sum_probs=187.2

Q ss_pred             eccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCC-------cceecccccccceeEEEEecCC-CEEEEEeCCCe
Q 010470          220 KINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTG-------SLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNN  290 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~  290 (510)
                      .+.||.+.|++++|+| ++.+|++|+.||+|++||+.++       ..+..+.+|...|.+++|+|++ ++|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 8899999999999999999765       2456788999999999999986 68999999999


Q ss_pred             EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEE
Q 010470          291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFS  368 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~  368 (510)
                      |+|||+.+++....+.+|...|.+++|+| ++.+|++++.||.|++||++++..+..+..+..  ...+.|.+++..+++
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            99999999999999999999999999999 889999999999999999999998888876643  456788888887776


Q ss_pred             ec----CCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeEeecCCCeeecC
Q 010470          369 GH----IDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRATGNRVASN  442 (510)
Q Consensus       369 ~~----~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  442 (510)
                      ++    .|+.|++||+++.. ++.....+....+....|++++++|++++ .|+.|++||+.++............   .
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~---~  305 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE---P  305 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC---C
Confidence            43    47899999998764 33333333335666778999999999887 5999999999998876654432211   1


Q ss_pred             ceeEEEcCC
Q 010470          443 WSRSCISPD  451 (510)
Q Consensus       443 ~~~~~~s~~  451 (510)
                      ...++|.|.
T Consensus       306 ~~g~~~~pk  314 (493)
T PTZ00421        306 HKGLCMMPK  314 (493)
T ss_pred             CcceEeccc
Confidence            223666663

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=7e-30  Score=245.41  Aligned_cols=266  Identities=27%  Similarity=0.487  Sum_probs=226.5

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceee-ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHK-INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL  267 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  267 (510)
                      +.+++.+..+..|+...         ...+.. +.||.+.|.+++|...+.++++|+.|.+++|||..+|.+...+.+|.
T Consensus       221 ~~~~s~~~tl~~~~~~~---------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~  291 (537)
T KOG0274|consen  221 FKSGSDDSTLHLWDLNN---------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT  291 (537)
T ss_pred             EEecCCCceeEEeeccc---------ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC
Confidence            34555666666666433         334555 99999999999999888899999999999999999999999999999


Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  347 (510)
                      +.|.++...  +.++++|+.|.+|++|++.++..+..+.+|.++|.++..+   +.++++|+.||+|++||+.+++++..
T Consensus       292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~s  366 (537)
T KOG0274|consen  292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKS  366 (537)
T ss_pred             ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeee
Confidence            999988874  5568888999999999999999999999999999999985   78999999999999999999999999


Q ss_pred             eeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          348 IIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       348 ~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      +.+|. .|.++.+.+. ..+++|+.|+.|++||++++ +++..+..|. .-+.++.  ..+++|++++.|+.|++||...
T Consensus       367 l~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~-~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  367 LSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT-SLVSSLL--LRDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             ecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc-ccccccc--cccceeEeccccccEEEeeccc
Confidence            99885 4899987644 89999999999999999999 8998888886 5554444  4678999999999999999999


Q ss_pred             ceeeeEeecC-CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470          426 LEVCGSLRAT-GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       426 ~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  478 (510)
                      ++....+... ...+.    .+++.  ...+++++.||++.+||+.+++....+
T Consensus       443 ~~~~~~~~~~~~~~v~----~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  443 GECLRTLEGRHVGGVS----ALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             CceeeeeccCCcccEE----EeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            9999999875 22222    23332  578889999999999999999988766

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.5e-29  Score=210.64  Aligned_cols=247  Identities=20%  Similarity=0.319  Sum_probs=211.8

Q ss_pred             ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC--CCcEEE
Q 010470          259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY--DRTLKV  336 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~--dg~i~i  336 (510)
                      +.+.+....+.|.++.|+++|.++++++.|..+++||..+++..+++..+.-.+..++|.. ..+.++.++.  |.+|+.
T Consensus         6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEE
Confidence            3345555678999999999999999999999999999999999999998888899999987 5566666665  889999


Q ss_pred             EECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470          337 WDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD  415 (510)
Q Consensus       337 wd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  415 (510)
                      .++.+.+.++.+.+|.. |++++.+|-+..+++++.|++|++||++..++...+...   .-..++|+|.|-++|++...
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~---~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS---GRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC---CCcceeECCCCcEEEEecCC
Confidence            99999999999999865 999999999999999999999999999988877666654   34458999999999999988


Q ss_pred             CcEEEEEcCCc--eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCE---EEEEE
Q 010470          416 NLHNLFDIRSL--EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV---LSCSW  490 (510)
Q Consensus       416 ~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v---~~~~~  490 (510)
                      +.|++||+++.  .+..++.... .....|..+.|||||++|+.++..+.+++.|.-+|....++..+...-   .+.+|
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence            89999999964  3444444332 334568889999999999999999999999999999988887765432   67899


Q ss_pred             eCCCCcEEEeeCCCeEEEcC
Q 010470          491 SGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       491 ~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +||++++++|+.||+|.+|+
T Consensus       241 tPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  241 TPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             CCCCcEEEEecCCCcEEEEE
Confidence            99999999999999999995

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.9e-29  Score=211.13  Aligned_cols=261  Identities=17%  Similarity=0.264  Sum_probs=215.6

Q ss_pred             EEEEeeCCCeEEEEeCCCC------------cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470          239 RLISGGQDKSIKLWDTNTG------------SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       239 ~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  306 (510)
                      .|++|+....|.-+++...            .++..+..|.++|++++.  ++.++++|+.|-+|+|||+.+......+-
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence            3566776666666655321            225567789999999998  48999999999999999999999999999


Q ss_pred             CCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 010470          307 GHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK  384 (510)
Q Consensus       307 ~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  384 (510)
                      .|.+.|+++.|.+.- ...|++|+.||.|.+|+...-.++.++..|. .|+.++++|.|+.-++.+.|+.++.||+-.|+
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            999999999998832 2489999999999999999999999998874 59999999999999999999999999999998


Q ss_pred             eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeE
Q 010470          385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV  464 (510)
Q Consensus       385 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i  464 (510)
                      .-......+  ..+.+.|+|.|.+++.++.+ .|-+|.+.+......+..+....      ++..-++.++++|++|+.|
T Consensus       161 ~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l------~~~~l~~~~L~vG~d~~~i  231 (362)
T KOG0294|consen  161 VAFVLNLKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRIL------CATFLDGSELLVGGDNEWI  231 (362)
T ss_pred             cceeeccCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccce------eeeecCCceEEEecCCceE
Confidence            777666553  44559999999999988776 57889888766555444332111      1223368899999999999


Q ss_pred             EEEeCCCcceeecccccCcCEEEEEE--eCCCCcEEEeeCCCeEEEcC
Q 010470          465 YIWSISKADIVRTLKEHTAPVLSCSW--SGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       465 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+||.++..+...+.+|...|.++.+  .|++.+|+|+|+||.|+|||
T Consensus       232 ~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  232 SLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             EEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence            99999999999999999999999985  36678999999999999997

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.2e-29  Score=223.86  Aligned_cols=280  Identities=14%  Similarity=0.260  Sum_probs=237.9

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCC--CcceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCe
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNT--GSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      .++|++|.|+|....+++++.||+++||.++.  ...+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            46899999999999999999999999998863  344666667788999999999999 888899999999999998774


Q ss_pred             eE--eecCCC-CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          302 RH--TLTGHT-DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       302 ~~--~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                      ..  ...++. ..+....++| ++++|+..|..|.|.+....++..+.++...+.+..++|+.+++.|++++.+|.|++|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            33  333443 3467788888 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc------eeeeEeecCCCeeecCceeEEEcCCC
Q 010470          379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL------EVCGSLRATGNRVASNWSRSCISPDE  452 (510)
Q Consensus       379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~  452 (510)
                      |++...++..+.....-.-++++.+++|.||++|+..|.|.|||..+.      +++..+.    .....++.+.|+||+
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d----NLtt~Itsl~Fn~d~  447 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD----NLTTAITSLQFNHDA  447 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh----hhheeeeeeeeCcch
Confidence            999999999998775456778899999999999999999999997642      2222222    223456679999999


Q ss_pred             CEEEEEcC--CCeEEEEeCCCcceeecccc---cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          453 SYVAAGSA--DGSVYIWSISKADIVRTLKE---HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       453 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ++||.+|.  +..+++-.+.+......++.   .-+.|+|++|||.|.+|+.|..+|.+.+|
T Consensus       448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence            99988875  56799999998888777764   34568999999999999999999999999

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4e-30  Score=209.83  Aligned_cols=240  Identities=21%  Similarity=0.304  Sum_probs=199.2

Q ss_pred             ccceEEEEEecC-CCEEEEeeCCCeEEEEeCC-CCcceecccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCCCe
Q 010470          225 EGGCASILFEYN-SARLISGGQDKSIKLWDTN-TGSLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       225 ~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      .+.+..++|+++ .+.+++++.||++++||.. ...++..++.|...|.++.|++-. ..+++++-|++|++|+..-++.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            457899999985 4678999999999999964 345788899999999999998854 5677889999999999999999


Q ss_pred             eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcC-CCCEEEEecCCCcEEEEE
Q 010470          302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIFSGHIDGNLRLWD  379 (510)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~-~~~~l~~~~~dg~i~i~d  379 (510)
                      +.++.+|..-|....|+|..++.++++|.|+++++||++..-....+..|. .+.|+.|+. +.+.+++|+.|+.|++||
T Consensus       140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD  219 (311)
T KOG0277|consen  140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD  219 (311)
T ss_pred             eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence            999999999999999999999999999999999999998543333365554 799999987 667888999999999999


Q ss_pred             CCCCc-eeeeecccccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCce-eeeEeecCCCeeecCceeEEEcC-CCCEE
Q 010470          380 IQTGK-LLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISP-DESYV  455 (510)
Q Consensus       380 ~~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~-~~~~l  455 (510)
                      +++.+ ++..+.+|. -.|+.+.|||. ..+|++++.|-+++|||..... .+.+...|...+..    +.||+ ++.++
T Consensus       220 ir~~r~pl~eL~gh~-~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g----~Dws~~~~~~v  294 (311)
T KOG0277|consen  220 IRNLRTPLFELNGHG-LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG----LDWSLFDPGQV  294 (311)
T ss_pred             hhhccccceeecCCc-eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEec----cccccccCcee
Confidence            99854 566776665 89999999996 4588999999999999987443 33444445544443    66666 67899


Q ss_pred             EEEcCCCeEEEEeC
Q 010470          456 AAGSADGSVYIWSI  469 (510)
Q Consensus       456 ~~~~~dg~i~iwd~  469 (510)
                      |+++.|+.++||+.
T Consensus       295 As~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  295 ASTGWDELLYVWNP  308 (311)
T ss_pred             eecccccceeeecc
Confidence            99999999999984

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-30  Score=237.60  Aligned_cols=281  Identities=22%  Similarity=0.374  Sum_probs=231.0

Q ss_pred             cccceE---EEEEe-cCCCEEEEeeCCCeEEEEeCCCCc------ceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          224 HEGGCA---SILFE-YNSARLISGGQDKSIKLWDTNTGS------LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       224 h~~~v~---~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      |...|.   .+..+ |.+++|+|||.||.|++|+.....      ...++..|...|.++....+++.|+++|.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            444455   44444 467789999999999999985422      36778899999999999999999999999999999


Q ss_pred             EEcCCC--CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE--eeee--------e--ecCceeEEEE
Q 010470          294 WDVNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--VNTI--------I--FHSNCNALAF  359 (510)
Q Consensus       294 wd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~--------~--~~~~i~~i~~  359 (510)
                      |+...+  -++.++..|.+.|.|+++...+...+++||-|+.|.+||++++..  +..+        .  ...++.+++.
T Consensus       100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~  179 (735)
T KOG0308|consen  100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM  179 (735)
T ss_pred             eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence            999877  577888999999999999433888999999999999999997732  2222        1  1235899999


Q ss_pred             cCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee
Q 010470          360 SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       360 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  439 (510)
                      ++.|..|++|+..+.+++||.++.+.+..+.+|. ..|..+..++||..+++++.||+|++||+...+++.++..|...+
T Consensus       180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT-dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V  258 (735)
T KOG0308|consen  180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT-DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV  258 (735)
T ss_pred             CCcceEEEecCcccceEEeccccccceeeeeccc-cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence            9999999999999999999999999999999887 999999999999999999999999999999999999998888775


Q ss_pred             ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          440 ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ..    +..+|+-.++++|+.||.|+.-|+.+......+-....+|..+..+.+.+.+-+++.|+.|+-|
T Consensus       259 Wa----L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW  324 (735)
T KOG0308|consen  259 WA----LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW  324 (735)
T ss_pred             EE----EeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence            44    7788999999999999999999998843222222244566666666555555666677777766

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3e-29  Score=231.84  Aligned_cols=241  Identities=22%  Similarity=0.360  Sum_probs=216.3

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc-cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      .+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|.  +..+.+|+.++.|..+|++..+.
T Consensus       215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~  292 (484)
T KOG0305|consen  215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH  292 (484)
T ss_pred             cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence            3488999999999999999999999999999999999999988 99999999997  77799999999999999998775


Q ss_pred             eEe-ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcC-CCCEEEEe--cCCCcEE
Q 010470          302 RHT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSM-DGQTIFSG--HIDGNLR  376 (510)
Q Consensus       302 ~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~-~~~~l~~~--~~dg~i~  376 (510)
                      ... +.+|...|+.+.|++ ++.++++|+.|+.+.|||.....++..+..| ..|.+++|+| ....||+|  +.|++|+
T Consensus       293 ~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~  371 (484)
T KOG0305|consen  293 VVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK  371 (484)
T ss_pred             hhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence            444 889999999999999 9999999999999999999877777777766 4599999999 56678875  4799999


Q ss_pred             EEECCCCceeeeecccccccEEEEEEcCCCCEEEEE--ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470          377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS--GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      +||..++..+..+...  +.|.++.|++..+-|+++  ..++.|.||+..+.+.+..+.+|...+..    ++++|||..
T Consensus       372 fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~----la~SPdg~~  445 (484)
T KOG0305|consen  372 FWNTNTGARIDSVDTG--SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLY----LALSPDGET  445 (484)
T ss_pred             EEEcCCCcEecccccC--CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEE----EEECCCCCE
Confidence            9999999999888876  799999999998877765  45678999999999999999999988766    999999999


Q ss_pred             EEEEcCCCeEEEEeCCCc
Q 010470          455 VAAGSADGSVYIWSISKA  472 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~  472 (510)
                      |++|+.|.++++|++-..
T Consensus       446 i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  446 IVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEecccCcEEeccccCC
Confidence            999999999999998764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.4e-30  Score=234.19  Aligned_cols=313  Identities=22%  Similarity=0.346  Sum_probs=251.9

Q ss_pred             HhhhhcCCceEEecccccccccccCCCcc-ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC--cceeccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPST-CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTLY  264 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~  264 (510)
                      .+.+++.||.++.|..+...    ..|.. +..++..|...|+.+....+|+.|+++|.|-+|++|+...+  -+..++.
T Consensus        39 yLfTgGRDg~i~~W~~~~d~----~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDS----NEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             eEEecCCCceEEEecccccc----CCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            48899999999999865421    12222 58889999999999999999999999999999999999877  5678899


Q ss_pred             ccccceeEEEE-ecCCCEEEEEeCCCeEEEEEcCCCC--ee--------Eeec-CCCCceEEEEEecCCCCEEEEEeCCC
Q 010470          265 GCLGSVLDLAI-THDNRSVIAASSSNNLYVWDVNSGR--VR--------HTLT-GHTDKVCAVDVSKISSRHVVSAAYDR  332 (510)
Q Consensus       265 ~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~--~~--------~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg  332 (510)
                      .|...|.|+++ -++...+++|+-|+.|.+||++++.  .+        ..+. ++...|++++.++ .+..|++|+..+
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek  193 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEK  193 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCccc
Confidence            99999999999 8888999999999999999999772  22        2233 7889999999998 778999999999


Q ss_pred             cEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE
Q 010470          333 TLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT  411 (510)
Q Consensus       333 ~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  411 (510)
                      .+++||.++++.+..+.+|. +|.++..++||..+++++.||+|++||+...+++.++..|. ..|.++..+|+-.++++
T Consensus       194 ~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~-e~VWaL~~~~sf~~vYs  272 (735)
T KOG0308|consen  194 DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK-EGVWALQSSPSFTHVYS  272 (735)
T ss_pred             ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc-CceEEEeeCCCcceEEe
Confidence            99999999999888888774 59999999999999999999999999999999999999988 66999999999999999


Q ss_pred             EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc-------ceeecccc----
Q 010470          412 SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA-------DIVRTLKE----  480 (510)
Q Consensus       412 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~----  480 (510)
                      |+.||.|..=|+++......+.....++..    +..+...+-+.+++.|+.|.-|...-.       .+......    
T Consensus       273 G~rd~~i~~Tdl~n~~~~tlick~daPv~~----l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~  348 (735)
T KOG0308|consen  273 GGRDGNIYRTDLRNPAKSTLICKEDAPVLK----LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNH  348 (735)
T ss_pred             cCCCCcEEecccCCchhheEeecCCCchhh----hhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCc
Confidence            999999999999985443333333333332    444444445577788888888865321       11110000    


Q ss_pred             -------------cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          481 -------------HTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       481 -------------~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                                   ...+|...+.-.|.++++|=+..|.+.+||
T Consensus       349 ~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD  391 (735)
T KOG0308|consen  349 SCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD  391 (735)
T ss_pred             cccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence                         111334445556778999999999999997

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.4e-28  Score=194.56  Aligned_cols=251  Identities=24%  Similarity=0.378  Sum_probs=207.0

Q ss_pred             CCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-----eecccccccceeEEEEecC----CCEEE
Q 010470          213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-----SSTLYGCLGSVLDLAITHD----NRSVI  283 (510)
Q Consensus       213 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~  283 (510)
                      .|......-+.|.+.|.|.+|||+|.+|++|+.|.+|++.-.+...+     -..+..|.+.|..++|..+    +..|+
T Consensus        77 pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~  156 (350)
T KOG0641|consen   77 PPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA  156 (350)
T ss_pred             CCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence            34445566778999999999999999999999999999987654332     2346679999999999643    44566


Q ss_pred             EEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--------Cce
Q 010470          284 AAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--------SNC  354 (510)
Q Consensus       284 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~i  354 (510)
                      +++ .|..|++-|...|+..+.+.+|++.|.++-- . ++-++++|+.|.+|++||++-..++.++...        +.+
T Consensus       157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav  234 (350)
T KOG0641|consen  157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV  234 (350)
T ss_pred             ecCCCcceEEEeecCCCCcceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence            655 6788999999999999999999999988643 2 6889999999999999999998888877432        348


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc----eeee
Q 010470          355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL----EVCG  430 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~  430 (510)
                      .++++.|.|+.|++|..|....+||++.+++++.+..|. ..|.|+.|+|...|+++++.|..|++-|+...    -++.
T Consensus       235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs-adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~  313 (350)
T KOG0641|consen  235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS-ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM  313 (350)
T ss_pred             EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc-cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence            999999999999999999999999999999999999988 89999999999999999999999999998741    1122


Q ss_pred             EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      ....|.....    .+.|+|..--+++.+.|.++.+|-++
T Consensus       314 vv~ehkdk~i----~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  314 VVAEHKDKAI----QCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEeccCceE----EEEecCccceeeeccCcceEEEeccC
Confidence            2222333322    27899999899999999999999764

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=3.7e-28  Score=234.27  Aligned_cols=247  Identities=14%  Similarity=0.217  Sum_probs=186.5

Q ss_pred             hcCCceEEecccccccccccCCCccceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCc--------ceec
Q 010470          192 QQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTGS--------LSST  262 (510)
Q Consensus       192 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~  262 (510)
                      |..++.+++|+.+.         ..+...+.+|.++|.+++|+|+ +.+|++|+.||+|+|||+.++.        ++..
T Consensus        50 GG~~gvI~L~~~~r---------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~  120 (568)
T PTZ00420         50 GGLIGAIRLENQMR---------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI  120 (568)
T ss_pred             CCceeEEEeeecCC---------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence            34455556655332         2356788999999999999996 7899999999999999997642        2345


Q ss_pred             ccccccceeEEEEecCCCEE-EEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470          263 LYGCLGSVLDLAITHDNRSV-IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       263 ~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      +.+|...|.+++|+|++..+ ++++.|+.|++||+.+++....+. |...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus       121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK  198 (568)
T ss_pred             eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC
Confidence            67899999999999998765 688999999999999998877776 667899999999 889999999999999999999


Q ss_pred             CeEeeeeeecCc-e-----eEEEEcCCCCEEEEecCCC----cEEEEECCC-Cceeeeeccccc-ccEEEEEEcCCCCEE
Q 010470          342 GYCVNTIIFHSN-C-----NALAFSMDGQTIFSGHIDG----NLRLWDIQT-GKLLSEVAAHSL-AAVTSISLSRSGNII  409 (510)
Q Consensus       342 ~~~~~~~~~~~~-i-----~~i~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~-~~i~~i~~~~~~~~l  409 (510)
                      +..+..+..|.. +     ....|++++.+|++++.++    .|++||+++ ++++..+..... +.+......++|.++
T Consensus       199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY  278 (568)
T ss_pred             CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence            999888877643 2     2234568889999877664    799999995 556655543321 233333345568899


Q ss_pred             EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC
Q 010470          410 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE  452 (510)
Q Consensus       410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  452 (510)
                      ++|+.|+.|++|++..+.. ..+..  .....+...++|.|..
T Consensus       279 lsGkGD~tIr~~e~~~~~~-~~l~~--~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLGSI-RKVNE--YKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEECCCeEEEEEccCCcE-Eeecc--cccCCCccceEEcccc
Confidence            9999999999999987642 22221  1122233447788854

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=5.3e-29  Score=230.32  Aligned_cols=277  Identities=21%  Similarity=0.402  Sum_probs=234.6

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce--ecccccccceeE-EEEec-CCCEEEEEeCCCeE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS--STLYGCLGSVLD-LAITH-DNRSVIAASSSNNL  291 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~~i  291 (510)
                      +..+.+.||...|..+++.+. ..++++|.||++++|+-..+..+  ..+.+|.+.|.. +++.+ ++-.+++|+.|.+|
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            467789999999999988755 48999999999999998655543  346677777777 88875 55569999999999


Q ss_pred             EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEec
Q 010470          292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~  370 (510)
                      .+|.+....+...+.+|...|+++.... ++. +++||.|.++++|-.  +++...+.+| ..|.++...|.+ .+++|+
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgs  158 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGS  158 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEecc
Confidence            9999999999999999999999998765 344 999999999999975  5555556666 458999998887 889999


Q ss_pred             CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470          371 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP  450 (510)
Q Consensus       371 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  450 (510)
                      .|.+|++|.  .++.+.++.+|. ..|+.+++-+++ .|++++.||.|++|++ +++.+....+|.+.+.+    +...+
T Consensus       159 aDKtIklWk--~~~~l~tf~gHt-D~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs----is~~~  229 (745)
T KOG0301|consen  159 ADKTIKLWK--GGTLLKTFSGHT-DCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS----ISMAL  229 (745)
T ss_pred             Ccceeeecc--CCchhhhhccch-hheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEE----EEecC
Confidence            999999997  488899999987 999999998864 5788999999999999 78888888888887765    77788


Q ss_pred             CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          451 DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       451 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++..|++++.|++++||+..  ++...+....-.|+++.+-++|. +++|++||.|+||+
T Consensus       230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT  286 (745)
T KOG0301|consen  230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT  286 (745)
T ss_pred             CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence            99999999999999999976  77777775666899999988885 88888999999994

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-28  Score=201.75  Aligned_cols=234  Identities=20%  Similarity=0.314  Sum_probs=208.4

Q ss_pred             cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470          262 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       262 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      .+.+|..+++.+.|+.+|.+|++++.|..+.+|-..+|+.+.++.+|.+.|+|+.... +...+++|+.|.++++||+.+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence            3678999999999999999999999999999999889999999999999999999987 889999999999999999999


Q ss_pred             CeEeeeeeecCceeEEEEcCCCCEEEEecC-----CCcEEEEECC-------CCceeeeecccccccEEEEEEcCCCCEE
Q 010470          342 GYCVNTIIFHSNCNALAFSMDGQTIFSGHI-----DGNLRLWDIQ-------TGKLLSEVAAHSLAAVTSISLSRSGNII  409 (510)
Q Consensus       342 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~~l  409 (510)
                      |+++.++..+..+..+.|+++|++++..+.     .+.|.+||++       ...++..+..+. +.++.+-|+|-+.+|
T Consensus        84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGPLGETI  162 (327)
T ss_pred             CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecccCCEE
Confidence            999999999999999999999998887653     4679999998       445677777776 899999999999999


Q ss_pred             EEEecCCcEEEEEcCCce-eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEE
Q 010470          410 LTSGRDNLHNLFDIRSLE-VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSC  488 (510)
Q Consensus       410 ~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  488 (510)
                      ++|..||.|.+||++++. .+.....|...    ++.++++||..++++++.|.+-++||+.+-++++++. ...||++.
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~----Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~a  237 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSK----INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTA  237 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccc----cccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccce
Confidence            999999999999999974 44444555544    4559999999999999999999999999999999887 46799999


Q ss_pred             EEeCCCCcEEEeeC
Q 010470          489 SWSGLGKPLASADK  502 (510)
Q Consensus       489 ~~~~~~~~l~s~~~  502 (510)
                      +++|....++.||.
T Consensus       238 aisP~~d~VilgGG  251 (327)
T KOG0643|consen  238 AISPLLDHVILGGG  251 (327)
T ss_pred             ecccccceEEecCC
Confidence            99998877776653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=1.9e-28  Score=231.08  Aligned_cols=309  Identities=17%  Similarity=0.287  Sum_probs=262.5

Q ss_pred             chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc
Q 010470          185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY  264 (510)
Q Consensus       185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  264 (510)
                      .+..+..|+..|.+.+|+...         .+.+++++++...|+++.=+|-=+.++.|..+|+|.|+++..++.+.++.
T Consensus       171 YLNKIvvGs~~G~lql~Nvrt---------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk  241 (910)
T KOG1539|consen  171 YLNKIVVGSSQGRLQLWNVRT---------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK  241 (910)
T ss_pred             heeeEEEeecCCcEEEEEecc---------CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE
Confidence            345566778888888888554         56889999999999999999988899999999999999999999999998


Q ss_pred             ccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeEe---------------------------------------
Q 010470          265 GCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRHT---------------------------------------  304 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~---------------------------------------  304 (510)
                      ...+.|+.++|..||+.+++. +..|.+.+||++..+.+..                                       
T Consensus       242 ~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d  321 (910)
T KOG1539|consen  242 QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD  321 (910)
T ss_pred             ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence            667999999999999876555 4568999999874311100                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 010470          305 --------------------------------------------------------------------------------  304 (510)
Q Consensus       305 --------------------------------------------------------------------------------  304 (510)
                                                                                                      
T Consensus       322 g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~f  401 (910)
T KOG1539|consen  322 GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEF  401 (910)
T ss_pred             CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceee
Confidence                                                                                            


Q ss_pred             -------------------------------------e-----cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470          305 -------------------------------------L-----TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       305 -------------------------------------~-----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~  342 (510)
                                                           +     +.....+++++.++ .|++.+.|+..|.|-+|++.+|
T Consensus       402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG  480 (910)
T KOG1539|consen  402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG  480 (910)
T ss_pred             ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC
Confidence                                                 0     01124567777777 7888888888899999999888


Q ss_pred             eEeeee----eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcE
Q 010470          343 YCVNTI----IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH  418 (510)
Q Consensus       343 ~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  418 (510)
                      -....+    .+..+|++++...-++.+++++.+|.+.+||..+......+...  .++.++.++.....++.+..|-.|
T Consensus       481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s~l~a~~~ddf~I  558 (910)
T KOG1539|consen  481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVSDLLAIALDDFSI  558 (910)
T ss_pred             eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeehhhhhhhhcCceeE
Confidence            887777    34466999999988899999999999999999988888777766  688999999999999999999999


Q ss_pred             EEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEE
Q 010470          419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA  498 (510)
Q Consensus       419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  498 (510)
                      .++|..+.+.++.|.+|++.+..    ++|||||++|++++.|++|++||+.++.++..+. -..+++++.|+|+|.+|+
T Consensus       559 ~vvD~~t~kvvR~f~gh~nritd----~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LA  633 (910)
T KOG1539|consen  559 RVVDVVTRKVVREFWGHGNRITD----MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLA  633 (910)
T ss_pred             EEEEchhhhhhHHhhccccceee----eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEE
Confidence            99999999999999999988876    9999999999999999999999999999987775 456889999999999999


Q ss_pred             EeeCC-CeEEEcC
Q 010470          499 SADKN-GVVCVWT  510 (510)
Q Consensus       499 s~~~d-g~i~iwd  510 (510)
                      |...| .-|++|.
T Consensus       634 T~Hvd~~gIylWs  646 (910)
T KOG1539|consen  634 TVHVDQNGIYLWS  646 (910)
T ss_pred             EEEecCceEEEEE
Confidence            99988 5699994

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=7.2e-29  Score=241.31  Aligned_cols=281  Identities=21%  Similarity=0.285  Sum_probs=228.8

Q ss_pred             HHhhhhc--CCceEEecccccccc---cccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-----
Q 010470          187 EKLAKQQ--VDGVVRRSEEGAEFF---AESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-----  256 (510)
Q Consensus       187 ~~~~~~~--~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-----  256 (510)
                      ..++++.  .|+.+++|.......   .....-.+...+...|.+.|+|+.|+|||.+||+||.|+.|.||....     
T Consensus        26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~  105 (942)
T KOG0973|consen   26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT  105 (942)
T ss_pred             eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc
Confidence            4566776  788888998554221   111213456677889999999999999999999999999999999872     


Q ss_pred             --C-----------cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470          257 --G-----------SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR  323 (510)
Q Consensus       257 --~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  323 (510)
                        |           +....+.+|.+.|.+++|+|++.++++++.|++|.|||..+.+.+..+.+|.+.|.++.|.| -+.
T Consensus       106 ~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gk  184 (942)
T KOG0973|consen  106 VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGK  184 (942)
T ss_pred             cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccC
Confidence              1           24566789999999999999999999999999999999999999999999999999999999 899


Q ss_pred             EEEEEeCCCcEEEEECCCCeEeeeeeec-------CceeEEEEcCCCCEEEEecC----CCcEEEEECCCCceeeeeccc
Q 010470          324 HVVSAAYDRTLKVWDLHKGYCVNTIIFH-------SNCNALAFSMDGQTIFSGHI----DGNLRLWDIQTGKLLSEVAAH  392 (510)
Q Consensus       324 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~  392 (510)
                      +|++-+.|++|+||.+.+-...+.+..+       .-+..+.|+|||.+|++...    -.++.|.+-.+.+.-..+.+|
T Consensus       185 y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH  264 (942)
T KOG0973|consen  185 YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH  264 (942)
T ss_pred             eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC
Confidence            9999999999999998775565555443       23788999999999998542    336888887777777888888


Q ss_pred             ccccEEEEEEcCC-----CC------------EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470          393 SLAAVTSISLSRS-----GN------------IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       393 ~~~~i~~i~~~~~-----~~------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  455 (510)
                      . .++.++.|+|.     ..            .+++|+.|+.|.||.....+++....   +.....+..++|+|||..|
T Consensus       265 ~-~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~---~lf~~SI~DmsWspdG~~L  340 (942)
T KOG0973|consen  265 S-APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH---NLFNKSIVDMSWSPDGFSL  340 (942)
T ss_pred             C-CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh---hhhcCceeeeeEcCCCCeE
Confidence            8 79999999981     11            67889999999999987766654432   2223345669999999999


Q ss_pred             EEEcCCCeEEEEeCCCc
Q 010470          456 AAGSADGSVYIWSISKA  472 (510)
Q Consensus       456 ~~~~~dg~i~iwd~~~~  472 (510)
                      +++|.||+|.++.+...
T Consensus       341 facS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  341 FACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEEecCCeEEEEEcchH
Confidence            99999999999998753

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=9.7e-29  Score=218.14  Aligned_cols=263  Identities=19%  Similarity=0.289  Sum_probs=213.2

Q ss_pred             HhhhhcCCceEEecccccccc-----cc------cCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC
Q 010470          188 KLAKQQVDGVVRRSEEGAEFF-----AE------STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT  256 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  256 (510)
                      ...+.+.++.+..|.......     ..      ...|.+...  ++|...|.+++.|+||+||++|+.|..|.||+..+
T Consensus       156 ~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t  233 (479)
T KOG0299|consen  156 RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT  233 (479)
T ss_pred             ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc
Confidence            445667788888887443221     11      223333333  59999999999999999999999999999999999


Q ss_pred             CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEE
Q 010470          257 GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV  336 (510)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i  336 (510)
                      .+.+..+.+|.+.|.+++|-.....+++++.|..|++|+++....+.++.+|.+.|.+|.... -...+-+|+.|+++++
T Consensus       234 ~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rl  312 (479)
T KOG0299|consen  234 LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRL  312 (479)
T ss_pred             cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEE
Confidence            999999999999999999998889999999999999999999999999999999999998876 5666777779999999


Q ss_pred             EECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc-----------ccEEEEEEcCC
Q 010470          337 WDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-----------AAVTSISLSRS  405 (510)
Q Consensus       337 wd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~i~~i~~~~~  405 (510)
                      |++.....+-.....+.+-|++|- +...+++|+.+|.|.+|++-+.+++......+.           ..|++++..|.
T Consensus       313 wKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~  391 (479)
T KOG0299|consen  313 WKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG  391 (479)
T ss_pred             EeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence            999655544444444578999987 667889999999999999999988877654321           27899999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCc----eeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          406 GNIILTSGRDNLHNLFDIRSL----EVCGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       406 ~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      .+++++|+.+|.|++|-+..+    .++..++     ....++.++|+++|++|++|.
T Consensus       392 sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-----~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  392 SDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-----LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             CceEEecCCCCceEEEEecCCccccceeeecc-----cccEEEEEEEccCCCEEEEec
Confidence            999999999999999998765    2222222     334456699999999777764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=5.2e-29  Score=221.88  Aligned_cols=278  Identities=20%  Similarity=0.329  Sum_probs=232.3

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC---cceeccc--ccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTLY--GCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      -.|..-|.++++|...++++||+ .|.|+|||+...   .++..+.  ...+.|.++...|||+.|++|+.-.++.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            36778889999999999999998 578999999532   2233332  34678899999999999999999999999999


Q ss_pred             CCCCee--EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCC
Q 010470          297 NSGRVR--HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDG  373 (510)
Q Consensus       297 ~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg  373 (510)
                      ....+.  ..+....-..++++.+| +.+..+++..||.|.|||+.+...++.+.++. .+.||.+++||..|.+|+-|.
T Consensus       495 AapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence            765543  33444445677889999 88999999999999999999999999999885 499999999999999999999


Q ss_pred             cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      +|+.||++.++.+......  +.|.++.++|++.++++|-.++.+.|......+. ..+..|...+.    ++.|++.|+
T Consensus       574 tvRcWDlregrqlqqhdF~--SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhlheScVL----SlKFa~cGk  646 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHDFS--SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHLHESCVL----SLKFAYCGK  646 (705)
T ss_pred             ceeehhhhhhhhhhhhhhh--hhheecccCCCccceeeecccCcEEEEecCCccc-eeecccccEEE----EEEecccCc
Confidence            9999999999887766554  7899999999999999999999998888765443 23333444443    389999999


Q ss_pred             EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          454 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       454 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ++++.+.|+-+..|.+.-|..+...+ ..++|.++.+|.|.++++||+.|....||
T Consensus       647 wfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  647 WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             eeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEE
Confidence            99999999999999999888776665 46789999999999999999999887776

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=3.3e-27  Score=219.43  Aligned_cols=268  Identities=16%  Similarity=0.149  Sum_probs=207.8

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEE-EEeCCCeEEEEEcCCCCeeEeecCCCCceEEE
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI-AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV  315 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i  315 (510)
                      +..+++++.|+.|.+||+.+++.+..+..+. .+.+++|+|++..++ +++.++.|++||+.+++....+..+.. +..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF   78 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence            3578899999999999999998888777654 467899999999774 566789999999999888777765443 5678


Q ss_pred             EEecCCCCEE-EEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCC-cEEEEECCCCceeeeecccc
Q 010470          316 DVSKISSRHV-VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG-NLRLWDIQTGKLLSEVAAHS  393 (510)
Q Consensus       316 ~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~  393 (510)
                      .|+| +++.+ ++++.++.|++||+.++..+..+.....+.+++|+|+|.+++++..++ .+.+||..+++........ 
T Consensus        79 ~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-  156 (300)
T TIGR03866        79 ALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-  156 (300)
T ss_pred             EECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-
Confidence            8998 55555 455668999999999988887776666688999999999999888765 4677899888776554433 


Q ss_pred             cccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCee---ecCceeEEEcCCCCEEEE-EcCCCeEEEEe
Q 010470          394 LAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRV---ASNWSRSCISPDESYVAA-GSADGSVYIWS  468 (510)
Q Consensus       394 ~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd  468 (510)
                       ..+.++.|+|+|.+++++ ..++.|.+||+.+++....+.......   ......++|+|+|+++++ .+.++.|.+||
T Consensus       157 -~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d  235 (300)
T TIGR03866       157 -QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD  235 (300)
T ss_pred             -CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence             456789999999988655 468999999999988766654322111   111234789999998654 45567899999


Q ss_pred             CCCcceeecccccCcCEEEEEEeCCCCcEEEe-eCCCeEEEcC
Q 010470          469 ISKADIVRTLKEHTAPVLSCSWSGLGKPLASA-DKNGVVCVWT  510 (510)
Q Consensus       469 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd  510 (510)
                      +.+++.+..+. +...+.+++|+|+|++|+++ +.+|.|.+||
T Consensus       236 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       236 AKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             CCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            99888776553 44578999999999998876 5689999997

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.1e-28  Score=226.86  Aligned_cols=292  Identities=18%  Similarity=0.276  Sum_probs=235.0

Q ss_pred             ceeeccccccceEEEEEecC-----------CCEEEEeeCCCeEEEEeCCCCcce-------------e-----------
Q 010470          217 CKHKINAHEGGCASILFEYN-----------SARLISGGQDKSIKLWDTNTGSLS-------------S-----------  261 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~-----------~~~l~s~~~dg~i~iwd~~~~~~~-------------~-----------  261 (510)
                      ..+.+--|...|+.+.--|.           ...|+|++.|++|++||+..+..-             .           
T Consensus       361 k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~  440 (1080)
T KOG1408|consen  361 KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM  440 (1080)
T ss_pred             ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence            34455678888888766551           236899999999999999752110             0           


Q ss_pred             -------------cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC--CCCEEE
Q 010470          262 -------------TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI--SSRHVV  326 (510)
Q Consensus       262 -------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~  326 (510)
                                   ...+....+.+++.+|+|++|++|..-|.++||++...+....+..|...|.|+.|+..  ...+|+
T Consensus       441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA  520 (1080)
T KOG1408|consen  441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA  520 (1080)
T ss_pred             hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh
Confidence                         00112347899999999999999999999999999999999999999999999999863  357899


Q ss_pred             EEeCCCcEEEEECCCCe-Eeeeeeec-CceeEEEEcCCC--CEEEEecCCCcEEEEECCCCceeeeeccc----ccccEE
Q 010470          327 SAAYDRTLKVWDLHKGY-CVNTIIFH-SNCNALAFSMDG--QTIFSGHIDGNLRLWDIQTGKLLSEVAAH----SLAAVT  398 (510)
Q Consensus       327 s~~~dg~i~iwd~~~~~-~~~~~~~~-~~i~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~  398 (510)
                      +++.|+.|.|||+.... +++++..| +.|+++.|..+|  ..+++++.|..|.+--.........+..+    ....+.
T Consensus       521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY  600 (1080)
T KOG1408|consen  521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY  600 (1080)
T ss_pred             hccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence            99999999999997553 55666665 459999998877  67888888887765333221111112111    125789


Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470          399 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  478 (510)
                      .+.+.|+.+++++++.|..|+|||+.+++..+.|++....-. ....+...|.|.||++.+.|.++.++|..+|+++...
T Consensus       601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG-~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m  679 (1080)
T KOG1408|consen  601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG-DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM  679 (1080)
T ss_pred             EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC-ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence            999999999999999999999999999999999987554322 2334788999999999999999999999999999999


Q ss_pred             cccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          479 KEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       479 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      .+|...|+++.|.+|.+.|++.+.||+|.||
T Consensus       680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             cCcchheeeeeecccchhheeecCCceEEEE
Confidence            9999999999999999999999999999999

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.1e-27  Score=226.64  Aligned_cols=278  Identities=21%  Similarity=0.329  Sum_probs=230.7

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC-cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG-SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR  300 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  300 (510)
                      -+|+++-+.++|.|+|.+|++++.||.|++|+..+. ....++..+...|.+++.  ++.+|++|+.+++|.+|.+.++.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence            379999999999999999999999999999998765 445555547777777776  45689999999999999999888


Q ss_pred             eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470          301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWD  379 (510)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d  379 (510)
                      .-..+...+-++.+++|+. ++.+++.||.|-.|++.++.+......+..+ .+|.++.|+|.+++|++.+.||.|++||
T Consensus        88 ~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             ccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            7666666778899999988 8999999999999999999988888887776 5699999999999999999999999999


Q ss_pred             CCCCceeeeeccc-------ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC
Q 010470          380 IQTGKLLSEVAAH-------SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE  452 (510)
Q Consensus       380 ~~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  452 (510)
                      +.++.....+..-       ....+..++|+|+|..+++.+.|+.|++|+..++.....++.....  +.++.+.|+|+|
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s--s~~~~~~wsPnG  244 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS--SKFSDLQWSPNG  244 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc--cceEEEEEcCCC
Confidence            9988766655431       1246778899999999999999999999999999988877654433  336779999999


Q ss_pred             CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          453 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       453 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      .|||+++.||.|.|||+.+...    ......|.+++|.|+++.+-.-...|...+
T Consensus       245 ~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  245 KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccccc
Confidence            9999999999999999988322    223567999999999886655544554443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=9.6e-28  Score=218.29  Aligned_cols=292  Identities=19%  Similarity=0.280  Sum_probs=234.4

Q ss_pred             cCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCE-EEEEeCCC
Q 010470          211 STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRS-VIAASSSN  289 (510)
Q Consensus       211 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~  289 (510)
                      .++|..|...+.||++.|.|+..+|.|.+|++|+.||+|+||.+.+|.++.++.. .+.|.|++|+|.+.. ++++....
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~  464 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGE  464 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecC
Confidence            3578889999999999999999999999999999999999999999999988753 568999999997653 22222222


Q ss_pred             eEEEEEcCCC-------------------------------------CeeEeecCCCCceEEEEEecCCCCEEEEEeCC-
Q 010470          290 NLYVWDVNSG-------------------------------------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-  331 (510)
Q Consensus       290 ~i~iwd~~~~-------------------------------------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-  331 (510)
                      .+.|.+..-|                                     .-++..-.|...|..+.|+. .|.+|++...+ 
T Consensus       465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~  543 (733)
T KOG0650|consen  465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDS  543 (733)
T ss_pred             ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCC
Confidence            3333332111                                     01223334788999999998 88999887653 


Q ss_pred             --CcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCE
Q 010470          332 --RTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI  408 (510)
Q Consensus       332 --g~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  408 (510)
                        ..|.|+++.......-| ...+.+.++.|+|...+|++++. ..|++||+.....+..+.... ..|.+++++|.|..
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~-kwiS~msihp~GDn  621 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS-KWISSMSIHPNGDN  621 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC-eeeeeeeecCCCCe
Confidence              57899999766655445 33456999999999999998886 489999998888887777665 78999999999999


Q ss_pred             EEEEecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC------C---cceeecc
Q 010470          409 ILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS------K---ADIVRTL  478 (510)
Q Consensus       409 l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~------~---~~~~~~~  478 (510)
                      |++++.|+.+..||+.- .++.+++..|...+..    ++|++.-.++++|+.||++.||.-.      .   --++..+
T Consensus       622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~----Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L  697 (733)
T KOG0650|consen  622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRS----VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL  697 (733)
T ss_pred             EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhh----hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence            99999999999999974 5667777777777665    8999999999999999999998521      1   1346778


Q ss_pred             cccCcC----EEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          479 KEHTAP----VLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       479 ~~~~~~----v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++|...    |.++.|+|.-.+|+++|.||+|++|.
T Consensus       698 ~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  698 RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            888655    89999999999999999999999995

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=4.1e-27  Score=196.30  Aligned_cols=287  Identities=18%  Similarity=0.279  Sum_probs=223.8

Q ss_pred             ccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcc----------e-----ecccccccceeEEEEec-CCCEEE
Q 010470          221 INAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSL----------S-----STLYGCLGSVLDLAITH-DNRSVI  283 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~----------~-----~~~~~~~~~v~~~~~~~-~~~~l~  283 (510)
                      ...|.|.|+++.+.+ .|+++++|+.||.|.+||++....          .     ..-.+|.-.|.++.|-| |...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            346889999999988 689999999999999999975320          1     11236788999999988 455777


Q ss_pred             EEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEc
Q 010470          284 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFS  360 (510)
Q Consensus       284 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~  360 (510)
                      +++.|.++++||.++.+....|+ ..+.|++-+++|..  ..++++|..|-.|++.|+.+|.+..++.+|. .|.++.|+
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence            88899999999999988887777 56788888888853  3567888888999999999999999999885 59999999


Q ss_pred             CCCCE-EEEecCCCcEEEEECCCC-ceeeee-------------cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          361 MDGQT-IFSGHIDGNLRLWDIQTG-KLLSEV-------------AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       361 ~~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~-------------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      |...+ |++|+.||.|++||++.. .+...+             ...+.+.+.+++|+.++.++++++.|..+++|+..+
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            97665 568999999999999854 222222             122337899999999999999999999999999987


Q ss_pred             ceeeeEeec---CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470          426 LEVCGSLRA---TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       426 ~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  502 (510)
                      |.....-.+   +.......+. +. +.+...++---.++.+.++++-.+..+..+..|...|.+.++-|+-....+|+.
T Consensus       278 G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~  355 (397)
T KOG4283|consen  278 GRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM  355 (397)
T ss_pred             CcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence            654322111   1111111111 12 334444444455688999999999999999999989999999999999999999


Q ss_pred             CCeEEEcC
Q 010470          503 NGVVCVWT  510 (510)
Q Consensus       503 dg~i~iwd  510 (510)
                      |+.|..|.
T Consensus       356 d~ni~~w~  363 (397)
T KOG4283|consen  356 NGNIYMWS  363 (397)
T ss_pred             CCcccccc
Confidence            99999883

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-27  Score=211.68  Aligned_cols=242  Identities=24%  Similarity=0.350  Sum_probs=200.1

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC-------
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN-------  297 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-------  297 (510)
                      .|+|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-.+|+++.|+.||.+|++|+.||.|.+|.+.       
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999873       


Q ss_pred             --CCCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCc
Q 010470          298 --SGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN  374 (510)
Q Consensus       298 --~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~  374 (510)
                        +-++.+.+..|+-+|+++...+. ...+++++|.|.++++||+..|..+.++..+..+.+++++|.+..+++|+.+|.
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence              34578899999999999998874 457899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      |.+.++.......       ..+..=.+++.+.                    .+..+.++.+.  ..+++++++.||..
T Consensus       241 I~~~~~~~~~~~~-------~~v~~k~~~~~~t--------------------~~~~~~Gh~~~--~~ITcLais~Dgtl  291 (476)
T KOG0646|consen  241 IFQNLLFKLSGQS-------AGVNQKGRHEENT--------------------QINVLVGHENE--SAITCLAISTDGTL  291 (476)
T ss_pred             EEeeehhcCCccc-------ccccccccccccc--------------------eeeeeccccCC--cceeEEEEecCccE
Confidence            9998875433210       1111111111111                    11222233221  45667999999999


Q ss_pred             EEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC
Q 010470          455 VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK  495 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  495 (510)
                      |++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-.+
T Consensus       292 LlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  292 LLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             EEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            99999999999999999999998886778899998865433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=8.3e-26  Score=210.02  Aligned_cols=284  Identities=15%  Similarity=0.220  Sum_probs=215.7

Q ss_pred             hhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceeccccccc
Q 010470          190 AKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLG  268 (510)
Q Consensus       190 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~  268 (510)
                      ++...|+.+.+|+...         .++...+.+|.. +.+++|+|+|..+ ++++.++.|++||..+++....+..+..
T Consensus         5 ~s~~~d~~v~~~d~~t---------~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~   74 (300)
T TIGR03866         5 VSNEKDNTISVIDTAT---------LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD   74 (300)
T ss_pred             EEecCCCEEEEEECCC---------CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC
Confidence            4556788899888543         234555665544 6789999999976 5677889999999999887776655433


Q ss_pred             ceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC-cEEEEECCCCeEee
Q 010470          269 SVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR-TLKVWDLHKGYCVN  346 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~  346 (510)
                       +..++|+|+++.+++++ .++.+++||+.+++.+..+.. ...+.++.|+| ++..+++++.++ .+.+||..++....
T Consensus        75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~  151 (300)
T TIGR03866        75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVD  151 (300)
T ss_pred             -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence             56789999999876654 689999999998887777653 34468899999 788888887665 57788998888776


Q ss_pred             eeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCCceeeeecccc------cccEEEEEEcCCCCEEEE-EecCCcE
Q 010470          347 TIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGKLLSEVAAHS------LAAVTSISLSRSGNIILT-SGRDNLH  418 (510)
Q Consensus       347 ~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~-~~~d~~i  418 (510)
                      .......+.+++|+|+|.+++++ ..+|.|++||+.+++.+..+....      ......+.|+|+++++++ .+.++.+
T Consensus       152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i  231 (300)
T TIGR03866       152 NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV  231 (300)
T ss_pred             EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence            66555667889999999988654 468999999999988776654221      113456889999998655 4556789


Q ss_pred             EEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE-cCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470          419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG-SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG  492 (510)
Q Consensus       419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  492 (510)
                      .+||+.+++....+....     .+..++|+|+|++|+++ +.+|.|.+||+.+++.+..+... ..+++++++|
T Consensus       232 ~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       232 AVVDAKTYEVLDYLLVGQ-----RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEEECCCCcEEEEEEeCC-----CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            999999888766553222     23458999999999886 46899999999999999888755 4558888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=4.1e-26  Score=203.69  Aligned_cols=308  Identities=19%  Similarity=0.270  Sum_probs=240.8

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--------
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--------  259 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--------  259 (510)
                      ..+++..+|.+.+|..+..         ...+...+|.++|.+++.-.+|.+| +|+.|..|..||-+-.+.        
T Consensus       259 dviTgDS~G~i~Iw~~~~~---------~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~  328 (626)
T KOG2106|consen  259 DVITGDSGGNILIWSKGTN---------RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQ  328 (626)
T ss_pred             CEEeecCCceEEEEeCCCc---------eEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchh
Confidence            4567888899999987652         2233334999999999999999655 599999999998421000        


Q ss_pred             ---e-----------------------------ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC
Q 010470          260 ---S-----------------------------STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG  307 (510)
Q Consensus       260 ---~-----------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  307 (510)
                         +                             ....+|....+.++.+|+...+++++.|+.+++|+  ..++..+.. 
T Consensus       329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-  405 (626)
T KOG2106|consen  329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-  405 (626)
T ss_pred             cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-
Confidence               0                             11246777888999999999999999999999999  455555544 


Q ss_pred             CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCC-Ccee
Q 010470          308 HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT-GKLL  386 (510)
Q Consensus       308 ~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~  386 (510)
                      ...++.|+.|+| .+ .++.|+..|...+.|.++...+.......+++++.|+|+|.+|++|+.|+.|++|-+.. +...
T Consensus       406 ~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y  483 (626)
T KOG2106|consen  406 IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY  483 (626)
T ss_pred             ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence            467889999999 55 99999999999999999977776666677899999999999999999999999998854 5555


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee--------------EeecCCCeeecCceeEEEcCCC
Q 010470          387 SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG--------------SLRATGNRVASNWSRSCISPDE  452 (510)
Q Consensus       387 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~~~  452 (510)
                      .....++.++|+.+.|++|++++.+.+.|-.|..|.....+...              -|..........+..++-+.+.
T Consensus       484 ~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~  563 (626)
T KOG2106|consen  484 SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE  563 (626)
T ss_pred             EEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh
Confidence            55555555899999999999999999999999999543221111              1111222223344446667788


Q ss_pred             CEEEEEcCCCeEEEEeCCCcc---eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          453 SYVAAGSADGSVYIWSISKAD---IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       453 ~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +.+++|...|+|++|...--+   +...+.+|++.|++++|..+...|++.+.|.+|..|+
T Consensus       564 ~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~  624 (626)
T KOG2106|consen  564 KLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR  624 (626)
T ss_pred             hhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence            999999999999999876543   3456678999999999999988999888999999995

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=5.8e-27  Score=214.86  Aligned_cols=280  Identities=21%  Similarity=0.331  Sum_probs=214.0

Q ss_pred             EEEec---CCCEEEEeeCCCeEEEEeCCCCcc------eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470          231 ILFEY---NSARLISGGQDKSIKLWDTNTGSL------SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       231 ~~~s~---~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      ..|++   ....|+.+..||.|.++|......      +.....|.+.|.++.|-|....|++++.|.++++||+.++++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            44544   345789999999999999865433      245568999999999999778899999999999999999988


Q ss_pred             eEe--ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--------------------Eee-------eeeec-
Q 010470          302 RHT--LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--------------------CVN-------TIIFH-  351 (510)
Q Consensus       302 ~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~-------~~~~~-  351 (510)
                      ...  +.+|.+.|.+++|.|.+...|++|+.||.|.|||++-..                    +..       ....+ 
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            776  889999999999999999999999999999999986321                    000       00001 


Q ss_pred             CceeE---EEEcCCCCEEEEecC-CCcEEEEECCCCceeeee--------ccc--ccccEEEEEEcCCCCEEEEEecCCc
Q 010470          352 SNCNA---LAFSMDGQTIFSGHI-DGNLRLWDIQTGKLLSEV--------AAH--SLAAVTSISLSRSGNIILTSGRDNL  417 (510)
Q Consensus       352 ~~i~~---i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~--------~~~--~~~~i~~i~~~~~~~~l~~~~~d~~  417 (510)
                      ..+.+   +.+..|...|++++. |+.|+|||++........        ..+  ....+.++..+..|.+|++.+.|+.
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s  294 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS  294 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence            11222   444458888998776 999999999876433221        111  1246888899999999999999999


Q ss_pred             EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-eeecccccCcCEEEEEEeCCCC-
Q 010470          418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTLKEHTAPVLSCSWSGLGK-  495 (510)
Q Consensus       418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-  495 (510)
                      |++|++.+....-.....+.........-..+|++.++++|+.|+..++|.+.+.+ ....+.+|.-.|++++|.|... 
T Consensus       295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t  374 (720)
T KOG0321|consen  295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT  374 (720)
T ss_pred             EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence            99999986443322222222222333345689999999999999999999998854 4667788999999999988643 


Q ss_pred             cEEEeeCCCeEEEcC
Q 010470          496 PLASADKNGVVCVWT  510 (510)
Q Consensus       496 ~l~s~~~dg~i~iwd  510 (510)
                      -+++|+.|..+++|+
T Consensus       375 ~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  375 PVATCSDDFRVKIWR  389 (720)
T ss_pred             CceeeccCcceEEEe
Confidence            588889999999995

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.6e-26  Score=193.57  Aligned_cols=239  Identities=18%  Similarity=0.272  Sum_probs=192.6

Q ss_pred             ccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCC-CCee-EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470          265 GCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNS-GRVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       265 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      .....|.+++||| ...++++++.||+|++|++.. |... .....|.++|.+++|+. ++..+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccC
Confidence            4567899999999 455566888999999999986 3433 34457999999999998 889999999999999999999


Q ss_pred             CeEeeeeeecCceeEEEEcCCCC--EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEE
Q 010470          342 GYCVNTIIFHSNCNALAFSMDGQ--TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN  419 (510)
Q Consensus       342 ~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~  419 (510)
                      ++....-.+..++.++.|-+...  .|++|+.|.+|++||++...++..+..+  ..+.++..  -...++++..+..|.
T Consensus       104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv--~~pm~vVata~r~i~  179 (347)
T KOG0647|consen  104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADV--LYPMAVVATAERHIA  179 (347)
T ss_pred             CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhc--cCceeEEEecCCcEE
Confidence            97666666667899999977555  8999999999999999999999988877  56666655  356788899999999


Q ss_pred             EEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce--eecccccC---------cCEEEE
Q 010470          420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI--VRTLKEHT---------APVLSC  488 (510)
Q Consensus       420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~---------~~v~~~  488 (510)
                      +|+++++...  +.....+......++++.+|....+.|+-+|.+.|..++.+.+  -.+++.|.         .+|+++
T Consensus       180 vynL~n~~te--~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi  257 (347)
T KOG0647|consen  180 VYNLENPPTE--FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI  257 (347)
T ss_pred             EEEcCCCcch--hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence            9999865432  2233333444456688888888889999999999999988633  33445554         257899


Q ss_pred             EEeCCCCcEEEeeCCCeEEEcC
Q 010470          489 SWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       489 ~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|+|.-..|+|+|.||.+.+||
T Consensus       258 ~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  258 AFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             EeecccceEEEecCCceEEEec
Confidence            9999989999999999999998

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2e-27  Score=200.17  Aligned_cols=254  Identities=20%  Similarity=0.374  Sum_probs=207.8

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeC------CC------------------------------C-
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT------NT------------------------------G-  257 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~------~~------------------------------~-  257 (510)
                      ..|..++.||.|.|+|+.|++.+.++++++.|++-.||..      ..                              + 
T Consensus       180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~  259 (481)
T KOG0300|consen  180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH  259 (481)
T ss_pred             ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence            5689999999999999999999999999999999999972      11                              0 


Q ss_pred             ---cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcE
Q 010470          258 ---SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL  334 (510)
Q Consensus       258 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i  334 (510)
                         .++..+.+|.+.|.++.|...|+.+++++.|.+..+||++++.++..+.+|....+.++-+| ...++++++.|.+.
T Consensus       260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTF  338 (481)
T KOG0300|consen  260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTF  338 (481)
T ss_pred             eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCcee
Confidence               12345678999999999999999999999999999999999999999999999999999999 88999999999999


Q ss_pred             EEEECCCC-eEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEE
Q 010470          335 KVWDLHKG-YCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILT  411 (510)
Q Consensus       335 ~iwd~~~~-~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~  411 (510)
                      ++||++.. ..+..|.+|. .++++.|..+ ..+++|+.|.+|++||+++.. ++.++...  ++++.++++..+.+|+.
T Consensus       339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAi  415 (481)
T KOG0300|consen  339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAI  415 (481)
T ss_pred             EeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC--CccceeEeecCCceEEe
Confidence            99999843 3455566664 4999999854 568899999999999999864 55666655  78999999998999999


Q ss_pred             EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC--CEEEEEcCCCeEEEEeCCCc
Q 010470          412 SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE--SYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       412 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~  472 (510)
                      -..+..|++||+.........+.........+++++|..+-  .-|++++.|..+.-|++...
T Consensus       416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            99999999999986655433322223333345567786543  34778888999999998653

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=4.3e-27  Score=197.54  Aligned_cols=279  Identities=22%  Similarity=0.303  Sum_probs=220.9

Q ss_pred             hHHhhhhcCCceEEeccccc--------ccccccCC-CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC
Q 010470          186 LEKLAKQQVDGVVRRSEEGA--------EFFAESTV-PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT  256 (510)
Q Consensus       186 ~~~~~~~~~d~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  256 (510)
                      -..+++|+.|..+++.+...        +....... ....+++|-.|..+|+++.|+|....|++|+.|++|++||+..
T Consensus       124 G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK  203 (430)
T KOG0640|consen  124 GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSK  203 (430)
T ss_pred             CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEeccc
Confidence            35577888888888776331        01111111 1246788999999999999999999999999999999999975


Q ss_pred             Ccceec--ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee---cCCCCceEEEEEecCCCCEEEEEeCC
Q 010470          257 GSLSST--LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYD  331 (510)
Q Consensus       257 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~~~d  331 (510)
                      ....+.  ......+|.++.|+|.|.+|++|.....+++||+++-++...-   ..|.+.|+++.+++ .+++.++++.|
T Consensus       204 ~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkD  282 (430)
T KOG0640|consen  204 TSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKD  282 (430)
T ss_pred             HHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccC
Confidence            433222  2244678999999999999999999999999999998765443   46899999999999 89999999999


Q ss_pred             CcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc----cEEEEEEcC
Q 010470          332 RTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA----AVTSISLSR  404 (510)
Q Consensus       332 g~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~i~~i~~~~  404 (510)
                      |.|++||--+++|+.++...   +.|.+..|..+|+++++.+.|..+++|.+.+++++..+.+....    .-+...|+.
T Consensus       283 G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh  362 (430)
T KOG0640|consen  283 GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH  362 (430)
T ss_pred             CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC
Confidence            99999999999999988643   45899999999999999999999999999999999988765311    123455777


Q ss_pred             CCCEEEEEe-cCCcEEEEEcCCceeeeEee-cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          405 SGNIILTSG-RDNLHNLFDIRSLEVCGSLR-ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       405 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      ...|++.-. ..+.+.-||.++......+. +|.+.+.    .+.-||.+.-+++|+.|..+++|--
T Consensus       363 tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R----~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  363 TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR----WIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             ccceEEccccccCceeeccccchhhhhhcccCCCCCce----EEEeCCCCCceeeecccceeeeeee
Confidence            777766544 44678899999877665554 3444443    3778999999999999999999963

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=6.3e-26  Score=214.24  Aligned_cols=309  Identities=14%  Similarity=0.240  Sum_probs=247.4

Q ss_pred             hhcCCceEEecccccccccccCCC-ccceeeccccccceEEEEEecC--CCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470          191 KQQVDGVVRRSEEGAEFFAESTVP-STCKHKINAHEGGCASILFEYN--SARLISGGQDKSIKLWDTNTGSLSSTLYGCL  267 (510)
Q Consensus       191 ~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  267 (510)
                      ....++.+.+|.....     ..| .....-++.-.+.|+++. +|.  =+.++.|+.+|.+++|++.+++.+.++.++.
T Consensus       129 a~d~~~~l~vw~~s~~-----~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~  202 (910)
T KOG1539|consen  129 AVDISNILFVWKTSSI-----QEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF  202 (910)
T ss_pred             EEEccCcEEEEEeccc-----cccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccc
Confidence            3445666777764442     011 111112222233377764 453  3468999999999999999999999999999


Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---  344 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---  344 (510)
                      ..|+++.=+|-=..++.|..+|+|.++++..++.+.+|+...++|++++|..++...+++|+..|.+.+||++..+.   
T Consensus       203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v  282 (910)
T KOG1539|consen  203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV  282 (910)
T ss_pred             cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee
Confidence            99999999999999999999999999999999999999955699999999986667788888889999998643210   


Q ss_pred             --------------------------------------------------------------------------------
Q 010470          345 --------------------------------------------------------------------------------  344 (510)
Q Consensus       345 --------------------------------------------------------------------------------  344 (510)
                                                                                                      
T Consensus       283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f  362 (910)
T KOG1539|consen  283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF  362 (910)
T ss_pred             eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------ee------------eeeec
Q 010470          345 -------------------------------------------------------------VN------------TIIFH  351 (510)
Q Consensus       345 -------------------------------------------------------------~~------------~~~~~  351 (510)
                                                                                   ..            .+...
T Consensus       363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~  442 (910)
T KOG1539|consen  363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK  442 (910)
T ss_pred             hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence                                                                         00            00000


Q ss_pred             ------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec--ccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          352 ------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA--AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       352 ------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                            ..+++++.++.|++.+.|+..|.|.+|++.+|-....+.  ..+.++|++++.+.-++.+++++.+|.+.+||.
T Consensus       443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f  522 (910)
T KOG1539|consen  443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF  522 (910)
T ss_pred             cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence                  125677788889999999999999999999998888873  233489999999999999999999999999999


Q ss_pred             CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      .+......+.....     +..+..+.....++.+..|-.|.++|+.+.+.++.+.+|.+.|++++|||||++|++++.|
T Consensus       523 ~~k~l~~~l~l~~~-----~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD  597 (910)
T KOG1539|consen  523 KKKVLKKSLRLGSS-----ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD  597 (910)
T ss_pred             CCcceeeeeccCCC-----cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence            98887666654332     3336677788889999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEcC
Q 010470          504 GVVCVWT  510 (510)
Q Consensus       504 g~i~iwd  510 (510)
                      ++|++||
T Consensus       598 ~tIr~wD  604 (910)
T KOG1539|consen  598 STIRTWD  604 (910)
T ss_pred             CcEEEEe
Confidence            9999998

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.5e-26  Score=214.21  Aligned_cols=259  Identities=26%  Similarity=0.428  Sum_probs=217.6

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEE-EEEec-CCCEEEEeeCCCeEEEEeCCCCcceecccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCAS-ILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLYG  265 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  265 (510)
                      .++.++.||.+++|......+       ...+.+.+|.+.|.+ ++|-+ ++..+++|+.|++|.+|.+.+..+..++.+
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~-------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg   99 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQY-------LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG   99 (745)
T ss_pred             EEeecCCCCceeeeeccCccc-------ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhc
Confidence            356778899999998644222       234567889998888 88885 556799999999999999999999999999


Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      |...|.++....++. +++||.|.++++|-.  +++...+.+|...|+++...| .+ .++|||.|.+|++|.-  ++.+
T Consensus       100 H~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l  172 (745)
T KOG0301|consen  100 HKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLL  172 (745)
T ss_pred             cccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--Cchh
Confidence            999999999888887 999999999999965  567777999999999999988 44 8999999999999975  8889


Q ss_pred             eeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          346 NTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       346 ~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      +++.+|.. |..+++-+++ .|++++.||.|+.|++ +|..+....+|. .-+.++...+++..+++++.|++++||+..
T Consensus       173 ~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  173 KTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             hhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccc-eEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            99998865 8999998654 5788999999999998 888999998888 899999999999999999999999999987


Q ss_pred             CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          425 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                        .+.+.+..+...+.    ++++-++|. |++|++||.|+||...
T Consensus       250 --e~~q~I~lPttsiW----sa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  250 --ECVQVITLPTTSIW----SAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             --ceEEEEecCccceE----EEEEeeCCC-EEEeccCceEEEEEec
Confidence              56666655543332    255666676 5567779999999876

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.9e-26  Score=204.23  Aligned_cols=256  Identities=22%  Similarity=0.365  Sum_probs=207.5

Q ss_pred             CeEEEEeCCCCcceeccccc-ccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470          247 KSIKLWDTNTGSLSSTLYGC-LGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH  324 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  324 (510)
                      .++.+||+.+|....++.+. ...-.++..- ++.+++++. ....+.+|.+..........--.++|.++.-+| .+.+
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n-~G~~   95 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSN-LGYF   95 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCC-CceE
Confidence            45999999999988887765 2222222222 346677665 445899999876554443344568899999998 8888


Q ss_pred             EEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECC---------CCceeeeeccccc
Q 010470          325 VVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQ---------TGKLLSEVAAHSL  394 (510)
Q Consensus       325 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~  394 (510)
                      ++.|+..|.|++|.+.+|..+..+..|. +|+|+.|+.||.+|++|+.||.|.+|++.         +.++...+..|. 
T Consensus        96 l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht-  174 (476)
T KOG0646|consen   96 LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT-  174 (476)
T ss_pred             EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc-
Confidence            8888899999999999999999887774 59999999999999999999999999863         346677777777 


Q ss_pred             ccEEEEEEcCC--CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470          395 AAVTSISLSRS--GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       395 ~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  472 (510)
                      -+|+++...+.  ..++++++.|.++++||+..+..+.++..+..     +.+++++|.+..+++|+.+|.|.+.++...
T Consensus       175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s-----i~av~lDpae~~~yiGt~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS-----IKAVALDPAERVVYIGTEEGKIFQNLLFKL  249 (476)
T ss_pred             ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc-----ceeEEEcccccEEEecCCcceEEeeehhcC
Confidence            89999988775  45899999999999999999988887765433     344899999999999999999999887542


Q ss_pred             ----------------ceeecccccCc--CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          473 ----------------DIVRTLKEHTA--PVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       473 ----------------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                                      ..+..+.+|.+  +|+|++.+-||..|++|+.||.|+|||
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence                            23455678888  999999999999999999999999997

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.7e-27  Score=190.89  Aligned_cols=248  Identities=17%  Similarity=0.261  Sum_probs=195.5

Q ss_pred             ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC---cceecccccccceeEEEEec--CCCEEEEEeCCCeEEEEE
Q 010470          221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd  295 (510)
                      -..|...|..+..+..|++|+|+++|++|+|+.+.++   +.+.++.+|.++|+.++|..  .|.+|+++++||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3579999999999999999999999999999998654   45788999999999999976  799999999999999999


Q ss_pred             cCCCC--eeEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCC--eEeeee--eecCceeEEEEcCC---C--
Q 010470          296 VNSGR--VRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKG--YCVNTI--IFHSNCNALAFSMD---G--  363 (510)
Q Consensus       296 ~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~--~~~~~~--~~~~~i~~i~~~~~---~--  363 (510)
                      -.+++  .......|...|++++|.|.+ +-.|++++.||.|.|++.++.  .....+  .+.-.+++++|.|.   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            87775  345567899999999999953 456889999999999998754  222222  22345899999985   4  


Q ss_pred             ---------CEEEEecCCCcEEEEECCCCc--eeeeecccccccEEEEEEcCCC----CEEEEEecCCcEEEEEcCCcee
Q 010470          364 ---------QTIFSGHIDGNLRLWDIQTGK--LLSEVAAHSLAAVTSISLSRSG----NIILTSGRDNLHNLFDIRSLEV  428 (510)
Q Consensus       364 ---------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~i~d~~~~~~  428 (510)
                               +.|++|+.|..|+||+..++.  .-..+..|. ..|+.++|.|.-    .+|++++.||++.||..+....
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~-dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e  245 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK-DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE  245 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc-hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence                     569999999999999998763  233466666 899999999964    4799999999999998763211


Q ss_pred             eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      ...... -......+.++.||+.|++|++++.|+.|.+|.-.
T Consensus       246 ~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  246 PWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            111100 11122334568999999999999999999999743

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=4.3e-27  Score=209.75  Aligned_cols=238  Identities=22%  Similarity=0.379  Sum_probs=206.2

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      ..+.|.++.+.|||+.|++|+.-.++.|||+.....  ...+....-.+++++.+||.+..++++.||.|.|||+.+...
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~  543 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL  543 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence            345799999999999999999999999999975443  334444456778899999999999999999999999999999


Q ss_pred             eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470          302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  381 (510)
                      ++.|.+|.+.+.||.+++ ++..|.+|+-|++|+.||++.++.+....+.+.|.++.++|++.++++|-.++.+.+....
T Consensus       544 VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s  622 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS  622 (705)
T ss_pred             eecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence            999999999999999998 8999999999999999999999999998899999999999999999999999999998864


Q ss_pred             CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470          382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD  461 (510)
Q Consensus       382 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  461 (510)
                      .. ....+..|. +.|.++.|.+.|+++++.+.|+.+..|...-+..+.......     .+.++.+|.|.+||++|+.|
T Consensus       623 kp-~kyqlhlhe-ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S-----sVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  623 KP-EKYQLHLHE-SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-----SVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             Cc-cceeecccc-cEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC-----cceeeeeccCceEEEecCCC
Confidence            33 334444554 899999999999999999999999999988777665554333     33447889999999999999


Q ss_pred             CeEEEEeC
Q 010470          462 GSVYIWSI  469 (510)
Q Consensus       462 g~i~iwd~  469 (510)
                      ....||.+
T Consensus       696 kkATVYeV  703 (705)
T KOG0639|consen  696 KKATVYEV  703 (705)
T ss_pred             cceEEEEE
Confidence            88888865

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=7.9e-25  Score=195.55  Aligned_cols=277  Identities=18%  Similarity=0.288  Sum_probs=215.5

Q ss_pred             ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec---cccc-ccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST---LYGC-LGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      .+.-+..|....|+|.+..++.....|.+.+|++..+.....   +..+ ...|.|++|.++|. +++|.++|.|.||+.
T Consensus       196 vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~  274 (626)
T KOG2106|consen  196 VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSK  274 (626)
T ss_pred             ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeC
Confidence            344566788999999776665555678999999988766443   3322 36799999999987 889999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-----------Eee-------------------
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-----------CVN-------------------  346 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~-------------------  346 (510)
                      .+.+..+....|.+.|.+++...  +..|++|+.|+.|..||-.-.+           .++                   
T Consensus       275 ~~~~~~k~~~aH~ggv~~L~~lr--~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL  352 (626)
T KOG2106|consen  275 GTNRISKQVHAHDGGVFSLCMLR--DGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL  352 (626)
T ss_pred             CCceEEeEeeecCCceEEEEEec--CccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence            88887777779999999999876  4456779999999999832110           000                   


Q ss_pred             -----------eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470          347 -----------TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD  415 (510)
Q Consensus       347 -----------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  415 (510)
                                 .+.+......++.+|+.+.+++++.|+.+++|+  ..++.......  .+..|+.|+|.| .++.|+..
T Consensus       353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~--d~~~~~~fhpsg-~va~Gt~~  427 (626)
T KOG2106|consen  353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE--DPAECADFHPSG-VVAVGTAT  427 (626)
T ss_pred             EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec--CceeEeeccCcc-eEEEeecc
Confidence                       011112356788899999999999999999999  55555554444  789999999999 99999999


Q ss_pred             CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-eeecc-cccCcCEEEEEEeCC
Q 010470          416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTL-KEHTAPVLSCSWSGL  493 (510)
Q Consensus       416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~~~~v~~~~~~~~  493 (510)
                      |...+.|..+...+..-.. +.    +++.+.|+|+|.+||.|+.|+.|+||.+..+. ..... +.|..+|+.+.||+|
T Consensus       428 G~w~V~d~e~~~lv~~~~d-~~----~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D  502 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIHTD-NE----QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD  502 (626)
T ss_pred             ceEEEEecccceeEEEEec-CC----ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence            9999999998555443332 33    44559999999999999999999999987643 33333 224589999999999


Q ss_pred             CCcEEEeeCCCeEEEcC
Q 010470          494 GKPLASADKNGVVCVWT  510 (510)
Q Consensus       494 ~~~l~s~~~dg~i~iwd  510 (510)
                      +++|.+-+.|-.|..|.
T Consensus       503 s~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  503 SQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CceEEeccCceEEEEEc
Confidence            99999999999998883

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.5e-27  Score=219.14  Aligned_cols=277  Identities=22%  Similarity=0.351  Sum_probs=215.8

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc----eecccc---cccceeEEEEec-CCCEEEEEeCCCeEEEEEcC
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSL----SSTLYG---CLGSVLDLAITH-DNRSVIAASSSNNLYVWDVN  297 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~  297 (510)
                      +...+|..+++-..++.++.. .++||.++....    ...+.+   -.-.+..+.|.. +.++|++++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            346677777888888888754 678887654322    111111   122345667753 46789999999999999998


Q ss_pred             C---CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcC-CCCEEEEecCC
Q 010470          298 S---GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM-DGQTIFSGHID  372 (510)
Q Consensus       298 ~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~-~~~~l~~~~~d  372 (510)
                      .   .+.+..|..|...++++.|++...++|++||.||+|++||++......++...+ .|..+.|+| .+..|+++...
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence            7   566778899999999999999999999999999999999999988888887765 499999999 67899999999


Q ss_pred             CcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          373 GNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       373 g~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      |.+.+||+|... +...+..|. ++|.++.|+|++.+|++|++|+.|+|||..+.+.......+   ...++.++.|-|.
T Consensus       199 G~lqlWDlRqp~r~~~k~~AH~-GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn---Tiapv~rVkWRP~  274 (839)
T KOG0269|consen  199 GYLQLWDLRQPDRCEKKLTAHN-GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN---TIAPVGRVKWRPA  274 (839)
T ss_pred             ceEEEeeccCchhHHHHhhccc-CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe---ecceeeeeeeccC
Confidence            999999999765 455566665 99999999999999999999999999999865432222211   2234556899997


Q ss_pred             CCE-EEEEcC--CCeEEEEeCCCc-ceeecccccCcCEEEEEEeC-CCCcEEEeeCCCeEE
Q 010470          452 ESY-VAAGSA--DGSVYIWSISKA-DIVRTLKEHTAPVLSCSWSG-LGKPLASADKNGVVC  507 (510)
Q Consensus       452 ~~~-l~~~~~--dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~  507 (510)
                      ..+ |++++.  |-.|+|||+... -+..++..|...++.++|.. |...|.+|+.||.|.
T Consensus       275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            765 555553  778999999765 45677888999999999965 344788999999864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=207.16  Aligned_cols=274  Identities=18%  Similarity=0.276  Sum_probs=207.5

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce------
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS------  260 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------  260 (510)
                      ..+++|+.|-.++.|+...   ....++. .......-...|.++.|++.|..|++.+.....+|+|.......      
T Consensus       180 aR~~sGs~Dy~v~~wDf~g---Mdas~~~-fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD  255 (641)
T KOG0772|consen  180 ARFVSGSLDYTVKFWDFQG---MDASMRS-FRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGD  255 (641)
T ss_pred             ceeeeccccceEEEEeccc---ccccchh-hhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccc
Confidence            4678889999999998543   1111111 11122233447999999999999998888899999998754332      


Q ss_pred             ------ecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCC-eeEeec-----CCCCceEEEEEecCCCCEEEE
Q 010470          261 ------STLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGR-VRHTLT-----GHTDKVCAVDVSKISSRHVVS  327 (510)
Q Consensus       261 ------~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~-----~~~~~v~~i~~~~~~~~~l~s  327 (510)
                            ....||...++|.+|+|+.+ .+++++.||+++|||++..+ ....++     +..-+++.++|++ ++..|++
T Consensus       256 QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAa  334 (641)
T KOG0772|consen  256 QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAA  334 (641)
T ss_pred             hhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-Ccchhhh
Confidence                  22358999999999999865 68899999999999998654 233332     2345688999999 8889999


Q ss_pred             EeCCCcEEEEECCCCeEeeee---ee---cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeecc-cccccEEE
Q 010470          328 AAYDRTLKVWDLHKGYCVNTI---IF---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAA-HSLAAVTS  399 (510)
Q Consensus       328 ~~~dg~i~iwd~~~~~~~~~~---~~---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~~i~~  399 (510)
                      |+.||+|.+|+..+...-..+   ..   ...|+|+.|+++|++|++-+.|+++++||++..+ ++....+ ....+-+.
T Consensus       335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~td  414 (641)
T KOG0772|consen  335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTD  414 (641)
T ss_pred             cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCc
Confidence            999999999998543221111   11   2369999999999999999999999999999764 3333322 22256778


Q ss_pred             EEEcCCCCEEEEEe------cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          400 ISLSRSGNIILTSG------RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       400 i~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      ++|||+.++|++|.      ..|.+.+||..+...+..+......+.    .+.|+|.-+.|++|+.||.++||--
T Consensus       415 c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv----~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  415 CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVV----RCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             cccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEE----EEeecchhhheeeecCCCceEEEEC
Confidence            99999999999986      346899999999999888877654443    4889999999999999999999853

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=7.5e-26  Score=190.31  Aligned_cols=236  Identities=16%  Similarity=0.293  Sum_probs=194.8

Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      ....|+++.|+|.++.|++++.||.+++||+........+. |..++.+.+|.+  ...+++|+.||.|+.+|+.++...
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEeccCceEEEEEecCCcce
Confidence            46789999999999999999999999999999887666666 899999999976  678999999999999999998877


Q ss_pred             eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      ..-.+...+.|+.+++....+++|+.|++|++||.+.......+...  ..|.++..  .|+.|++|+.+..+.+||+++
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCMDV--SGNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--ceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence            77677788999999998899999999999999999986555555544  47777765  578999999999999999998


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc----ceeecccccC---------cCEEEEEEeC
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA----DIVRTLKEHT---------APVLSCSWSG  492 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~~~~~~  492 (510)
                      .........  ........++++-|++.-+++++-||+|.+=.++..    +....|+.|.         -||++++|+|
T Consensus       165 ~~~~~q~re--S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  165 LDEPFQRRE--SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccchhhhcc--ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            765443222  222233456888898888999999999988776655    3334455553         3799999999


Q ss_pred             CCCcEEEeeCCCeEEEcC
Q 010470          493 LGKPLASADKNGVVCVWT  510 (510)
Q Consensus       493 ~~~~l~s~~~dg~i~iwd  510 (510)
                      --..|+|||.||.|.+||
T Consensus       243 ~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             ccceEEecCCCceEEEcc
Confidence            988999999999999997

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=2.8e-26  Score=202.74  Aligned_cols=244  Identities=19%  Similarity=0.323  Sum_probs=194.0

Q ss_pred             cccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCCCc----------ceecccccccceeEEEEecCC-CEEEEEeCCC
Q 010470          222 NAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGS----------LSSTLYGCLGSVLDLAITHDN-RSVIAASSSN  289 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~  289 (510)
                      -.|.|.|+.+.+-|.. ..+++++..+.|.|||.....          +-..+.+|...-++++|++.. ..+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            4699999999999954 567788889999999985421          122677898878889998864 4688999999


Q ss_pred             eEEEEEcCCCC-------eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC--CeEeeeeeec-CceeEEEE
Q 010470          290 NLYVWDVNSGR-------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK--GYCVNTIIFH-SNCNALAF  359 (510)
Q Consensus       290 ~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~-~~i~~i~~  359 (510)
                      .|++||+....       +...+.+|...|..++|++.....|.+++.|+.+.|||+++  .++......+ ..++|++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            99999997532       45678899999999999999999999999999999999994  4444555554 56999999


Q ss_pred             cC-CCCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceee-------
Q 010470          360 SM-DGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVC-------  429 (510)
Q Consensus       360 ~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~-------  429 (510)
                      +| ++..|++|+.|++|.+||+|+. +++..+..|. ..|..+.|+|.. ..|++++.|+.+.+||+..-...       
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~-dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~  359 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE-DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE  359 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCC-cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence            99 6677889999999999999986 4566777776 899999999964 57888999999999999742221       


Q ss_pred             -------eEeecCCCeeecCceeEEEcCCCCE-EEEEcCCCeEEEEeCC
Q 010470          430 -------GSLRATGNRVASNWSRSCISPDESY-VAAGSADGSVYIWSIS  470 (510)
Q Consensus       430 -------~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~  470 (510)
                             ..-.+|..    .++.+.|+|+..+ |++.+.|+.+.||.+.
T Consensus       360 dgppEllF~HgGH~~----kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  360 DGPPELLFIHGGHTA----KVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cCCcceeEEecCccc----ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                   22223333    3445889998776 6778899999999975

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=4.8e-26  Score=201.00  Aligned_cols=291  Identities=17%  Similarity=0.237  Sum_probs=217.6

Q ss_pred             eeeccccccceEEEEEecCC--CEEEEeeCCCeEEEEeCCCCc----ceecccccccceeEEEEecCC-CEEEEEeCCCe
Q 010470          218 KHKINAHEGGCASILFEYNS--ARLISGGQDKSIKLWDTNTGS----LSSTLYGCLGSVLDLAITHDN-RSVIAASSSNN  290 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~  290 (510)
                      ....+-|.+.|++++|+|..  +++++|..-|.|-+||+.+..    -+..+..|.++|.++.|+|.+ ..+++.++||+
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            34567789999999999964  478999999999999995322    245577899999999999965 57899999999


Q ss_pred             EEEEEcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-eeeeeec-CceeEEEEcCC-CCE
Q 010470          291 LYVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIFH-SNCNALAFSMD-GQT  365 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-~~i~~i~~~~~-~~~  365 (510)
                      |++-|++.+.....+.  .....+.++.|+. +...++.+..=|.+.+||++++.. ...+..+ ..|++++++|. ..+
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            9999998765433333  2445567777877 666677777777999999997654 3333333 46999999995 457


Q ss_pred             EEEecCCCcEEEEECCCCce----eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC----CceeeeEeecCCC
Q 010470          366 IFSGHIDGNLRLWDIQTGKL----LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR----SLEVCGSLRATGN  437 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~  437 (510)
                      |++++.|++.+|||++....    +.....|. ..|.+..|||++..|++.+.|+.|+|||..    ...+...+.....
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr-rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~  416 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHR-RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR  416 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceeccccc-ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence            78999999999999986322    22233343 899999999998889999999999999984    3334344432221


Q ss_pred             e-eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCc-CEEEE-EEeCCCC-cEEEeeCCCeEEEcC
Q 010470          438 R-VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA-PVLSC-SWSGLGK-PLASADKNGVVCVWT  510 (510)
Q Consensus       438 ~-~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~-~~~~~~~-~l~s~~~dg~i~iwd  510 (510)
                      . -........|.|+..+|++|..-..|-|||-..++.+..+..... .|.++ .|+|-+. +++.++..|.|+||.
T Consensus       417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence            1 111223367999999999999999999999888887877655433 55554 8999988 445556778999984

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=3e-26  Score=202.53  Aligned_cols=242  Identities=24%  Similarity=0.358  Sum_probs=193.8

Q ss_pred             cccccceeEEEEecCCCEEEE-EeCCCeEEEEEcCCCC----------eeEeecCCCCceEEEEEecCCCCEEEEEeCCC
Q 010470          264 YGCLGSVLDLAITHDNRSVIA-ASSSNNLYVWDVNSGR----------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR  332 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg  332 (510)
                      ..|.+.|+.+.+.|.+..|++ .+..+.|+|||..+..          +-..+.+|...-++++|++.....+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            468889999999998776555 5677899999986422          22367889988889999998889999999999


Q ss_pred             cEEEEECCCCeE-------eeeeeec-CceeEEEEcC-CCCEEEEecCCCcEEEEECC--CCceeeeecccccccEEEEE
Q 010470          333 TLKVWDLHKGYC-------VNTIIFH-SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQ--TGKLLSEVAAHSLAAVTSIS  401 (510)
Q Consensus       333 ~i~iwd~~~~~~-------~~~~~~~-~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~i~~i~  401 (510)
                      +|++||+.....       ...+..+ ..|..++|+| +...|++++.|+.+.|||+|  +.++......|. +.+.|++
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~-~~vn~~~  279 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS-AEVNCVA  279 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC-CceeEEE
Confidence            999999974322       2333444 3489999999 56678899999999999999  455555666666 9999999


Q ss_pred             EcCC-CCEEEEEecCCcEEEEEcCCc-eeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCc------
Q 010470          402 LSRS-GNIILTSGRDNLHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKA------  472 (510)
Q Consensus       402 ~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~------  472 (510)
                      |+|- +.+|++|+.|++|.+||+|+. ..+.++.+|...+..    +.|||+ ...|++++.|+.+.|||+..-      
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~----V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ----VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEE----EEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence            9994 567888999999999999974 456777777777665    999995 567888999999999998652      


Q ss_pred             --------ceeecccccCcCEEEEEEeCCCCc-EEEeeCCCeEEEcC
Q 010470          473 --------DIVRTLKEHTAPVLSCSWSGLGKP-LASADKNGVVCVWT  510 (510)
Q Consensus       473 --------~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd  510 (510)
                              +++..-.||...|..++|+|+..+ +++.+.|+.+.||.
T Consensus       356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence                    223445679999999999999885 66889999999994

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=7.5e-28  Score=223.66  Aligned_cols=254  Identities=24%  Similarity=0.423  Sum_probs=225.6

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEE
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV  317 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~  317 (510)
                      .+++.+..+-.+++||..      .+..|...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|
T Consensus         5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f   78 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF   78 (825)
T ss_pred             cccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence            344555556667788754      34567888888888777888999999999999999887788889999999999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccccc
Q 010470          318 SKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA  396 (510)
Q Consensus       318 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  396 (510)
                      ++ ...+|++|+.+|+|++||+..++.++++.++ .++.++.|+|.+.+++.|+.|+.+.+||++...+...+..|. ..
T Consensus        79 ~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~-~v  156 (825)
T KOG0267|consen   79 DT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT-RV  156 (825)
T ss_pred             Cc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc-ce
Confidence            98 8889999999999999999999999988877 569999999999999999999999999999888899998865 89


Q ss_pred             EEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470          397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR  476 (510)
Q Consensus       397 i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  476 (510)
                      +.++.|+|+|++++.++.|..++|||+..++....|..|...+..    +.|+|..-+++.|+.|++|++||+.+.+.+.
T Consensus       157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~s----le~hp~e~Lla~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQS----LEFHPLEVLLAPGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccc----cccCchhhhhccCCCCceeeeeccceeEEee
Confidence            999999999999999999999999999999999999888777665    7799999999999999999999999999998


Q ss_pred             cccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          477 TLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       477 ~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      ........|.+.+|+|++..+.+|...
T Consensus       233 s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  233 SGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ccCCccCCceeeeecCCceeeecCchh
Confidence            888888899999999999988887654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=213.96  Aligned_cols=243  Identities=19%  Similarity=0.311  Sum_probs=206.6

Q ss_pred             cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC-CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~  342 (510)
                      ..|....+.++|.|+|.+|++++.||.|++|+..+. ..-.++..+...|.+++..   .++|++|+.+++|.+|.+.++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCC
Confidence            468888999999999999999999999999998765 3334444478888888874   469999999999999999887


Q ss_pred             eEeeee-eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          343 YCVNTI-IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       343 ~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      ..-..+ ...-++++++|+-+|.+++.|+.|-.|++.++.+......+.+|. ++|.++.|+|++.+|++.+.||.|++|
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-APVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-CceeeeeEcCCCCEEEEEecCceEEEE
Confidence            654333 334568999999999999999999999999999999999999988 999999999999999999999999999


Q ss_pred             EcCCceeeeEeecCCCe---e-ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc--cCcCEEEEEEeCCCC
Q 010470          422 DIRSLEVCGSLRATGNR---V-ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE--HTAPVLSCSWSGLGK  495 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~---~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~  495 (510)
                      |+.++....++..-...   . ....+.++|+|+|..+++.+.|+.|.+|+..+++....+..  +...+..+.|+|+|+
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~  245 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK  245 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence            99988777666532221   1 33456789999988888888899999999999988877754  455599999999999


Q ss_pred             cEEEeeCCCeEEEcC
Q 010470          496 PLASADKNGVVCVWT  510 (510)
Q Consensus       496 ~l~s~~~dg~i~iwd  510 (510)
                      |||+++.||.|.|||
T Consensus       246 YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  246 YIAASTLDGQILVWN  260 (933)
T ss_pred             EEeeeccCCcEEEEe
Confidence            999999999999997

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=9.9e-25  Score=201.82  Aligned_cols=276  Identities=16%  Similarity=0.250  Sum_probs=230.1

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-eecccc-cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTLYG-CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      -..+|.+++|+.+.+.||.+-.||.|.||++..+-. ...+.+ ....|.+++|+ ++..|++.+.+|.|.-||+.+++.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence            456899999999999999999999999999987644 333444 45689999999 566699999999999999999999


Q ss_pred             eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                      ...+....+.|++++.+| .+..++.|+.||.+..++...+.........   +.+.++.|+|++..++.|+.||.|++|
T Consensus       103 ~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw  181 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW  181 (691)
T ss_pred             eEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence            999999999999999999 7889999999998888888887766554433   569999999999999999999999999


Q ss_pred             ECCCCceeeeec-------ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          379 DIQTGKLLSEVA-------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       379 d~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      |..++..+....       .....-|.++.|-. ...|++|...|+|.+||...+..+..+..+...+.+    ++.+++
T Consensus       182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~----Lav~~~  256 (691)
T KOG2048|consen  182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA----LAVADN  256 (691)
T ss_pred             EcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeE----EEEcCC
Confidence            999988766222       11123567777764 467899999999999999999999888888777665    899999


Q ss_pred             CCEEEEEcCCCeEEEEeCCCcce----eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          452 ESYVAAGSADGSVYIWSISKADI----VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      ++++++++.|+.|.-|...+++.    ......|...|.+++..++  .|++||.|+.+.+
T Consensus       257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            99999999999999998776543    2233458888999999877  8999999988865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.2e-26  Score=185.36  Aligned_cols=242  Identities=21%  Similarity=0.341  Sum_probs=191.6

Q ss_pred             cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC---CeeEeecCCCCceEEEEEe-cCCCCEEEEEeCCCcEEEEEC
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG---RVRHTLTGHTDKVCAVDVS-KISSRHVVSAAYDRTLKVWDL  339 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~-~~~~~~l~s~~~dg~i~iwd~  339 (510)
                      ..|...|.++...-.|+.|++++.|++|+|+.++.+   +++.++.+|.++|+.++|. |.-+.+|++++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            467888888888888999999999999999999764   4678899999999999996 446889999999999999999


Q ss_pred             CCCeEeeeee---ecCceeEEEEcCC--CCEEEEecCCCcEEEEECCCC--ceeeeecccccccEEEEEEcCC---C---
Q 010470          340 HKGYCVNTII---FHSNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTG--KLLSEVAAHSLAAVTSISLSRS---G---  406 (510)
Q Consensus       340 ~~~~~~~~~~---~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~i~~~~~---~---  406 (510)
                      .+++-.+...   +...+++++|.|.  |-.|++++.||.|.|++.+..  -....+...+.-.|++++|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            8885433332   2356999999884  668899999999999988754  2333343344488999999986   4   


Q ss_pred             --------CEEEEEecCCcEEEEEcCCc--eeeeEeecCCCeeecCceeEEEcCCC----CEEEEEcCCCeEEEEeCCCc
Q 010470          407 --------NIILTSGRDNLHNLFDIRSL--EVCGSLRATGNRVASNWSRSCISPDE----SYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       407 --------~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~  472 (510)
                              +.|++|+.|+.|+||+..++  ..-.++..|...+..    ++|.|.-    .+|++++.||+|.||.....
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD----VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e  243 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD----VAWAPSVGLPKSTIASCSQDGTVIIWTKDEE  243 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh----hhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence                    56999999999999998874  233446666666655    7888853    57999999999999986632


Q ss_pred             -ce--eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          473 -DI--VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       473 -~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                       +.  ...+......+..++||+.|+.|+.++.|+.|.+|
T Consensus       244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence             11  12233356789999999999999999999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2.3e-27  Score=220.41  Aligned_cols=239  Identities=26%  Similarity=0.463  Sum_probs=217.4

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN  297 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  297 (510)
                      .+.+..|...|.|+..-..++.+++|+.|..+.+|.+..-..+..+.+|..+|-++.|+++..+|++|+.+|+|++||+.
T Consensus        21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle  100 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE  100 (825)
T ss_pred             chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence            34567899999999987788999999999999999998777778899999999999999999999999999999999999


Q ss_pred             CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEE
Q 010470          298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLR  376 (510)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~  376 (510)
                      .++.++++.+|...+.++.|+| -+.++++|+.|+.+++||++..-|...+..+.. +.++.|+|+|+++++|+.|..++
T Consensus       101 eAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  101 EAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             hhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence            9999999999999999999999 788889999999999999998888888887654 88999999999999999999999


Q ss_pred             EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEE
Q 010470          377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA  456 (510)
Q Consensus       377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  456 (510)
                      +||...|+....|..|. +.+.++.|+|..-+++.|+.|+++++||+++.+.+.........    +.+..|+|+|..++
T Consensus       180 i~d~~agk~~~ef~~~e-~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~----v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  180 IWDLTAGKLSKEFKSHE-GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDG----VRSLAFNPDGKIVL  254 (825)
T ss_pred             eeccccccccccccccc-ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCC----ceeeeecCCceeee
Confidence            99999999999999887 89999999999999999999999999999998887776665444    44589999999999


Q ss_pred             EEcCCC
Q 010470          457 AGSADG  462 (510)
Q Consensus       457 ~~~~dg  462 (510)
                      +|....
T Consensus       255 ~G~q~s  260 (825)
T KOG0267|consen  255 SGEQIS  260 (825)
T ss_pred             cCchhh
Confidence            887654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=4.7e-25  Score=204.30  Aligned_cols=317  Identities=22%  Similarity=0.331  Sum_probs=241.8

Q ss_pred             HHhhhhcCCceEEecccccccc--------cccC---CCc-cce----------eeccccccceEEEEEecCCCEEEEee
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFF--------AEST---VPS-TCK----------HKINAHEGGCASILFEYNSARLISGG  244 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~--------~~~~---~~~-~~~----------~~~~~h~~~v~~~~~s~~~~~l~s~~  244 (510)
                      -.+++++.|..||+|.......        ....   .|. .+.          ..+.||.+.|.++.|+|.+..|++++
T Consensus       207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS  286 (764)
T KOG1063|consen  207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS  286 (764)
T ss_pred             EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence            3467889999999997322110        0000   111 111          22459999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcc-------eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC---CeeEeecCCCCceEE
Q 010470          245 QDKSIKLWDTNTGSL-------SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG---RVRHTLTGHTDKVCA  314 (510)
Q Consensus       245 ~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~  314 (510)
                      .|.++.+|...+..-       +....+..+...+..|+|+++.+++-+..|..++|.....   .....+.||.+.|.+
T Consensus       287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~d  366 (764)
T KOG1063|consen  287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKD  366 (764)
T ss_pred             cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccccee
Confidence            999999998765421       2333455677899999999999999999999999983222   244456899999999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCCeEe--eee----eecCceeEEEEcCCCCEEEEecCCCcEEEEECCC------
Q 010470          315 VDVSKISSRHVVSAAYDRTLKVWDLHKGYCV--NTI----IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT------  382 (510)
Q Consensus       315 i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~------  382 (510)
                      ++|.| .+.++++.|.|.+-++|-.- |+..  ..+    .+....+|+++-+....+++|.....+++|+...      
T Consensus       367 v~W~p-sGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l  444 (764)
T KOG1063|consen  367 VDWDP-SGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL  444 (764)
T ss_pred             eeecC-CCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence            99999 88999999999999998754 2211  111    2234589999987667788888888899997521      


Q ss_pred             ----C----------------------ce--------------------------------------------eeeeccc
Q 010470          383 ----G----------------------KL--------------------------------------------LSEVAAH  392 (510)
Q Consensus       383 ----~----------------------~~--------------------------------------------~~~~~~~  392 (510)
                          +                      +.                                            +.++.+|
T Consensus       445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH  524 (764)
T KOG1063|consen  445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH  524 (764)
T ss_pred             HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence                0                      00                                            0111223


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCC-----cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470          393 SLAAVTSISLSRSGNIILTSGRDN-----LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW  467 (510)
Q Consensus       393 ~~~~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw  467 (510)
                      . ..|.+++.+|+|+++++++...     .|++|+..+......+..|.-.+..    ++|||||+||++.+.|.++.+|
T Consensus       525 G-yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~----l~FSpdg~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  525 G-YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR----LAFSPDGRYLLSVSRDRTVSLY  599 (764)
T ss_pred             c-eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE----EEECCCCcEEEEeecCceEEee
Confidence            3 6799999999999999998664     6899999998888888888776655    9999999999999999999999


Q ss_pred             eCCCcc----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          468 SISKAD----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       468 d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ......    .....+.|..-|.++.|+|++.+++|++.|.+|+||.
T Consensus       600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            875432    2344678999999999999999999999999999994

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.9e-25  Score=196.26  Aligned_cols=272  Identities=18%  Similarity=0.330  Sum_probs=221.7

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcce--eccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLS--STLY  264 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~  264 (510)
                      .+.++..|+.++++.....       ....++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+..  ....
T Consensus       227 lllvaG~d~~lrifqvDGk-------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~  299 (514)
T KOG2055|consen  227 LLLVAGLDGTLRIFQVDGK-------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY  299 (514)
T ss_pred             eEEEecCCCcEEEEEecCc-------cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC
Confidence            3445566666666653331       1224555555677999999999999 8999999999999999987763  3344


Q ss_pred             ccc-cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470          265 GCL-GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY  343 (510)
Q Consensus       265 ~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~  343 (510)
                      ++. ..+.....+|++++|+..+..|.|.+....+++.+.+++ ..+.|..++|+. ++..|++++.+|.|.+||++...
T Consensus       300 g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~  377 (514)
T KOG2055|consen  300 GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNS  377 (514)
T ss_pred             CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcc
Confidence            443 356677889999999999999999999999999998887 668899999997 77888888889999999999999


Q ss_pred             EeeeeeecCce--eEEEEcCCCCEEEEecCCCcEEEEECCC------CceeeeecccccccEEEEEEcCCCCEEEEEec-
Q 010470          344 CVNTIIFHSNC--NALAFSMDGQTIFSGHIDGNLRLWDIQT------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-  414 (510)
Q Consensus       344 ~~~~~~~~~~i--~~i~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-  414 (510)
                      +++.+...+.+  +++|.+++|.+|++|+..|.|.|||..+      .+++..+..-. ..|+++.|+|++.+|+.++. 
T Consensus       378 ~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt-t~Itsl~Fn~d~qiLAiaS~~  456 (514)
T KOG2055|consen  378 CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT-TAITSLQFNHDAQILAIASRV  456 (514)
T ss_pred             eEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh-eeeeeeeeCcchhhhhhhhhc
Confidence            99999877664  6788889999999999999999999643      45666666555 78999999999999988774 


Q ss_pred             -CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          415 -DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       415 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                       .+.+++..+.+......++.....+ ..+.+++|||.|.++|.|...|.|.+|.+.
T Consensus       457 ~knalrLVHvPS~TVFsNfP~~n~~v-g~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  457 KKNALRLVHVPSCTVFSNFPTSNTKV-GHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             cccceEEEeccceeeeccCCCCCCcc-cceEEEEecCCCceEEeecCCCceeeEeec
Confidence             5689999998888877777665444 457789999999999999999999999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=4e-25  Score=205.27  Aligned_cols=245  Identities=18%  Similarity=0.274  Sum_probs=209.2

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecC---CCEEEEEeCCCeEEEEEcCCC
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD---NRSVIAASSSNNLYVWDVNSG  299 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~  299 (510)
                      +...+|.+++.||+|++||+|..-|+++||++........+..|...|.|+.|+..   .++|++++.|..|.|||+...
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            34557999999999999999999999999999999988899999999999999753   578999999999999998644


Q ss_pred             -CeeEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEeeeee------ecCceeEEEEcCCCCEEEEecC
Q 010470          300 -RVRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTII------FHSNCNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       300 -~~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~~  371 (510)
                       .++.++.+|...|+++.|...+ +..+++++.|..|.+--.........+.      .+..+..+++.|+.+++++++.
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence             4788899999999999998733 2578899999887654333111111221      2245889999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccc--cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470          372 DGNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       372 dg~i~i~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                      |.+|+|||+.+|+..+.|++.+  .+..--+..+|.|.|+++++.|.++.+||..+++.+....+|...+..    +.|.
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG----~kF~  692 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTG----VKFL  692 (1080)
T ss_pred             ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheee----eeec
Confidence            9999999999999999998654  256777889999999999999999999999999999999999888776    9999


Q ss_pred             CCCCEEEEEcCCCeEEEEeCCC
Q 010470          450 PDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       450 ~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      +|-+.|++.+.||.|.||.+..
T Consensus       693 nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  693 NDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ccchhheeecCCceEEEEECch
Confidence            9999999999999999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=209.89  Aligned_cols=242  Identities=17%  Similarity=0.290  Sum_probs=197.4

Q ss_pred             ceEEEEEec-CCCEEEEeeCCCeEEEEeCCC---CcceecccccccceeEEEEecC-CCEEEEEeCCCeEEEEEcCCCCe
Q 010470          227 GCASILFEY-NSARLISGGQDKSIKLWDTNT---GSLSSTLYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       227 ~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      .+..|.|+. +.++|||++..|.|.+||+..   .+.+..+..|...++++.|++. ..+|++|+.||.|++||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            355667764 567999999999999999987   5667788899999999999875 45788999999999999999999


Q ss_pred             eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470          302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWD  379 (510)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d  379 (510)
                      ..++.+....|..+.|+|..++.|+++...|.+.+||++.. ++...+..| +++.|+.|+|++.+|++|+.|+.|+|||
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            99999999999999999988999999999999999999854 444555544 6799999999999999999999999999


Q ss_pred             CCCCceeeeecccccccEEEEEEcCCCCE-EEEEe--cCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcC-CCCE
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSRSGNI-ILTSG--RDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISP-DESY  454 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~--~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~  454 (510)
                      ..+++.-.....+...++.++.|-|...+ |++++  .|-.|+|||++. .-+..++..|...+..    ++|.. |...
T Consensus       249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~----i~W~~~d~~~  324 (839)
T KOG0269|consen  249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG----IAWDSGDRIN  324 (839)
T ss_pred             ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc----eeccCCCcee
Confidence            98776555555555589999999998765 45544  466899999985 3445566666666655    77754 5567


Q ss_pred             EEEEcCCCeEEEEeCCCc
Q 010470          455 VAAGSADGSVYIWSISKA  472 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~  472 (510)
                      +.+++.||+|..-.+++.
T Consensus       325 l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  325 LWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eEeecCccHHHHhhhhcc
Confidence            889999998876655544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=9.3e-25  Score=194.67  Aligned_cols=262  Identities=18%  Similarity=0.247  Sum_probs=210.2

Q ss_pred             ceEEEEEecCCC-EEEEeeCCCeEEEEeCCCC--cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          227 GCASILFEYNSA-RLISGGQDKSIKLWDTNTG--SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       227 ~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      ++.++.|+.... .+++.+.|..|++|.-...  .....-......-.|++......|+++|+..+.|+|||+....+.+
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr  115 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR  115 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence            489999987653 2344456788999975432  1211111112244555555566899999999999999999777888


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC--ceeEEEEcCCCCEEE-EecCCCcEEEEEC
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS--NCNALAFSMDGQTIF-SGHIDGNLRLWDI  380 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~-~~~~dg~i~i~d~  380 (510)
                      .+++|...|+++.++. .+.+|++++..|.|.|..+.++.....+...+  .+.-+.|+|..++++ +++.+|.|.+||+
T Consensus       116 ~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv  194 (673)
T KOG4378|consen  116 FLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV  194 (673)
T ss_pred             hccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence            8899999999999988 78999999999999999999998887777663  367899999777655 7889999999999


Q ss_pred             CCCceeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          381 QTGKLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       381 ~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      ....++..+...|..+...|+|+|.+ .+|++.+.|..|.+||.+.......+...     .+++.++|+++|.+|++|+
T Consensus       195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-----~Plstvaf~~~G~~L~aG~  269 (673)
T KOG4378|consen  195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-----HPLSTVAFSECGTYLCAGN  269 (673)
T ss_pred             cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec-----CCcceeeecCCceEEEeec
Confidence            88888888877776899999999965 57788999999999999977665555433     2345599999999999999


Q ss_pred             CCCeEEEEeCCC-cceeecccccCcCEEEEEEeCCC
Q 010470          460 ADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLG  494 (510)
Q Consensus       460 ~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~  494 (510)
                      ..|.|..||+.. ..++..+..|...|++++|-|.-
T Consensus       270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            999999999986 56788899999999999998764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5e-24  Score=179.14  Aligned_cols=260  Identities=18%  Similarity=0.365  Sum_probs=191.3

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC----cceecccccccceeEEEEec--CCCEEEEEeCCCeEEEEE
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd  295 (510)
                      .+|.+-|+|+.|++.|+++|+|+.|++|+|||..+.    .+......|.+.|..+.|.+  -|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            478899999999999999999999999999996433    33455678999999999965  488999999999999997


Q ss_pred             cCC---------CCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEee------eee--------ec
Q 010470          296 VNS---------GRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKGYCVN------TII--------FH  351 (510)
Q Consensus       296 ~~~---------~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~--------~~  351 (510)
                      -..         .....++......|+++.|.|. -+-.+++++.||.++||+......+.      .+.        .+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            521         1134556667889999999995 35578999999999999876432221      121        23


Q ss_pred             CceeEEEEcCC---CCEEEEecCC-----CcEEEEECCCC----ceeeeecccccccEEEEEEcCC----CCEEEEEecC
Q 010470          352 SNCNALAFSMD---GQTIFSGHID-----GNLRLWDIQTG----KLLSEVAAHSLAAVTSISLSRS----GNIILTSGRD  415 (510)
Q Consensus       352 ~~i~~i~~~~~---~~~l~~~~~d-----g~i~i~d~~~~----~~~~~~~~~~~~~i~~i~~~~~----~~~l~~~~~d  415 (510)
                      ....|+.|+|.   ..+|++|+.+     +.++||....+    ..+..+..+. .+|++|+|.|+    -..|++++.|
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~-dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT-DPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC-CcceeeeeccccCCceeeEEEeecC
Confidence            45789999873   4678888866     47888876443    2344555555 89999999996    3478999999


Q ss_pred             CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC
Q 010470          416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK  495 (510)
Q Consensus       416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  495 (510)
                      | |+||.+.......    .....        ..|+        .-+     ++ .-+.+..+.+|.+.|..+.|+-.|.
T Consensus       249 g-v~I~~v~~~~s~i----~~ee~--------~~~~--------~~~-----~l-~v~~vs~~~~H~~~VWrv~wNmtGt  301 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAI----EEEEV--------LAPD--------LMT-----DL-PVEKVSELDDHNGEVWRVRWNMTGT  301 (361)
T ss_pred             c-EEEEEEeeccchh----hhhcc--------cCCC--------Ccc-----cc-ceEEeeeccCCCCceEEEEEeeeee
Confidence            9 9999886321100    00000        0111        111     11 1234566788999999999999999


Q ss_pred             cEEEeeCCCeEEEc
Q 010470          496 PLASADKNGVVCVW  509 (510)
Q Consensus       496 ~l~s~~~dg~i~iw  509 (510)
                      .|++.|.||+|++|
T Consensus       302 iLsStGdDG~VRLW  315 (361)
T KOG2445|consen  302 ILSSTGDDGCVRLW  315 (361)
T ss_pred             EEeecCCCceeeeh
Confidence            99999999999999

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=4e-24  Score=180.83  Aligned_cols=274  Identities=18%  Similarity=0.279  Sum_probs=212.1

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--------e----ecc-cccccceeEEEEe-------cCCCEEEEE
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--------S----STL-YGCLGSVLDLAIT-------HDNRSVIAA  285 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--------~----~~~-~~~~~~v~~~~~~-------~~~~~l~~~  285 (510)
                      .-...+.|||||..|++-+.|..+.+|++...-.        .    .++ ......|...+|-       |+..++++.
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            3466789999999999999999999999853110        0    011 1234567777774       678899999


Q ss_pred             eCCCeEEEEEcCCCCeeEeecC--CCC---ceEEEEEecCCCCEEEEEeCCCcEEEEEC-CCCeEee---eeee-----c
Q 010470          286 SSSNNLYVWDVNSGRVRHTLTG--HTD---KVCAVDVSKISSRHVVSAAYDRTLKVWDL-HKGYCVN---TIIF-----H  351 (510)
Q Consensus       286 ~~d~~i~iwd~~~~~~~~~~~~--~~~---~v~~i~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~---~~~~-----~  351 (510)
                      +.+.-|++||.-+|+....+.+  |.+   ...++.|+| ++..|++|. .+.|++||+ +.|..-.   ++..     .
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence            9999999999999998877754  333   346899999 888888776 789999999 5553211   1111     2


Q ss_pred             CceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec-CCcEEEEEcCC-cee
Q 010470          352 SNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRS-LEV  428 (510)
Q Consensus       352 ~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~-~~~  428 (510)
                      +-+.+++|+|.. ..+++|+....+-||.-..+.++..+.++. +.|+.++|.++|+.|++|.+ +..|..||++. ..+
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~-gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG-GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC-CCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            348899999954 588999988889999888888888888777 99999999999999999885 57899999985 444


Q ss_pred             eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      +..+..+.......+ ...+.|+|++|++|+.||.|++||+++ +..+..+..|...++.++++|--+++++++..
T Consensus       287 v~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  287 VYALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             hhhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            555544443222211 145689999999999999999999998 77788888899999999999998888887654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=2.6e-24  Score=185.57  Aligned_cols=208  Identities=23%  Similarity=0.395  Sum_probs=174.1

Q ss_pred             cceeeccccccceEEEEEecCC--CEEEEeeCCCeEEEEeCCC----------------CcceecccccccceeEEEEec
Q 010470          216 TCKHKINAHEGGCASILFEYNS--ARLISGGQDKSIKLWDTNT----------------GSLSSTLYGCLGSVLDLAITH  277 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~  277 (510)
                      ......-+|.+.|+.+..++-|  .+.++-+..|.|+||++..                .+++.++.+|.+.=+.++|||
T Consensus       142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP  221 (440)
T ss_pred             cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence            3444556899999999888765  4667777899999999842                345677889999999999999


Q ss_pred             CC-CEEEEEeCCCeEEEEEcCCCCe---eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC---eEeeeeee
Q 010470          278 DN-RSVIAASSSNNLYVWDVNSGRV---RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNTIIF  350 (510)
Q Consensus       278 ~~-~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~  350 (510)
                      -. ..|++|..-+.|++|...+|.-   ...+.+|+..|-.+.|+|...+.|++||.||+|+|||++.+   .++.+-.+
T Consensus       222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh  301 (440)
T KOG0302|consen  222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH  301 (440)
T ss_pred             ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc
Confidence            43 2478888888999999988763   23567899999999999999999999999999999999988   55555556


Q ss_pred             cCceeEEEEcCCCCEEEEecCCCcEEEEECCC---CceeeeecccccccEEEEEEcCC-CCEEEEEecCCcEEEEEcC
Q 010470          351 HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT---GKLLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       351 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~  424 (510)
                      .+.|+.|.|+....+|++|+.||++.|||+|.   ++++..|..|. .+|++|.|+|. ...|++++.|.+|.+||+.
T Consensus       302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk-~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK-APITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc-CCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            67899999999888999999999999999985   56788888887 99999999995 4578889999999999985

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.93  E-value=2.8e-24  Score=198.29  Aligned_cols=271  Identities=14%  Similarity=0.257  Sum_probs=216.3

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  306 (510)
                      .|..++|-|||..|+.+.. ..+.+||.+.|..+.++++|...|++++|+.||+.+++|+.|..|.+|+..- +-+-.+ 
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY-   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY-   90 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-
Confidence            7999999999998887764 4799999999999999999999999999999999999999999999998542 222233 


Q ss_pred             CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 010470          307 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL  386 (510)
Q Consensus       307 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  386 (510)
                      .|++.|.|+.|+| -...+++++- ...-+|.... +.+........+.+.+|..||.+++.|..+|+|.+-+- +++..
T Consensus        91 SH~D~IQCMsFNP-~~h~LasCsL-sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek  166 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNP-ITHQLASCSL-SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEK  166 (1081)
T ss_pred             ccCCeeeEeecCc-hHHHhhhcch-hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcc
Confidence            4999999999999 6778888874 4577887753 33444455567899999999999999999999999864 45444


Q ss_pred             eeec--ccccccEEEEEEcCCC-----CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          387 SEVA--AHSLAAVTSISLSRSG-----NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       387 ~~~~--~~~~~~i~~i~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      ..+.  +...++|.+++|+|+.     ..+++...+.++.+|.+.. +.+.    ..........++.+.++|.|+..|+
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Ig----k~r~L~FdP~CisYf~NGEy~LiGG  241 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIG----KDRALNFDPCCISYFTNGEYILLGG  241 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeec----ccccCCCCchhheeccCCcEEEEcc
Confidence            3333  3344899999999963     3677788888888887753 2222    1222222334578889999999999


Q ss_pred             CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          460 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       460 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .|+.+.+|. ..|-.+.++......|+.++..|++++++.|+.||+|--|+
T Consensus       242 sdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  242 SDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             CCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            999999997 56777788777788999999999999999999999997654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.7e-24  Score=189.46  Aligned_cols=237  Identities=19%  Similarity=0.341  Sum_probs=185.9

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcc---------------------eecccccccceeEEEEecCC-CEEEEEeCCCeEEEE
Q 010470          237 SARLISGGQDKSIKLWDTNTGSL---------------------SSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVW  294 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw  294 (510)
                      |+++|.|+.|..|.|||+.--..                     -..-.+|...|.+++|+.+- +.|++||.|.+|.+|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            67999999999999999852110                     01123688888899997764 467888999999999


Q ss_pred             EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEeeeeeecCceeEEEEcCC-CCEEEEecCC
Q 010470          295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYCVNTIIFHSNCNALAFSMD-GQTIFSGHID  372 (510)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d  372 (510)
                      |+.++++..++..|.+.|.++.|+|..+.++++|+.|++|.+.|.+. +..-..+...+.|-.++|.|. ...+++++.|
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd  351 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD  351 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence            99999999999999999999999999999999999999999999984 333445566778999999984 4577789999


Q ss_pred             CcEEEEECCCC-ceeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470          373 GNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP  450 (510)
Q Consensus       373 g~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  450 (510)
                      |+|+-+|+|+. +++.++..|. ++|.++++++.- .++++++.|+.+++|++.......... +.... ....+.++.|
T Consensus       352 G~v~~~D~R~~~~~vwt~~AHd-~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~~-~rl~c~~~~~  428 (463)
T KOG0270|consen  352 GTVYYFDIRNPGKPVWTLKAHD-DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFKL-GRLHCFALDP  428 (463)
T ss_pred             ceEEeeecCCCCCceeEEEecc-CCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-ccccc-cceeecccCC
Confidence            99999999975 8999999988 899999999864 578889999999999987533321111 11111 1123355566


Q ss_pred             CCC-EEEEEcCCCeEEEEeCCCcceee
Q 010470          451 DES-YVAAGSADGSVYIWSISKADIVR  476 (510)
Q Consensus       451 ~~~-~l~~~~~dg~i~iwd~~~~~~~~  476 (510)
                      +-. +++.|+..+.++|||+.+...+.
T Consensus       429 ~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  429 DVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             CcceEEEecCccceEEEeecccChhHH
Confidence            544 57778888899999998876543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.7e-24  Score=182.93  Aligned_cols=292  Identities=16%  Similarity=0.210  Sum_probs=221.6

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC------Ccceeccc-ccccceeEEEEecCCCEEEEEeCCC
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT------GSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSN  289 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~  289 (510)
                      |.+-+.+|.|.|+++.||.++++|++|+.|..+++|+++.      .+++.... .|...|.|++|...+..+++|..++
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            5667889999999999999999999999999999999863      24444333 4568999999999999999999999


Q ss_pred             eEEEEEcCCCCeeEeecC--CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-Eee---eeeecCceeEEEEcCC-
Q 010470          290 NLYVWDVNSGRVRHTLTG--HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVN---TIIFHSNCNALAFSMD-  362 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~---~~~~~~~i~~i~~~~~-  362 (510)
                      +|..-|+++.+.+..+..  ..+.|+.+..+| ..+.|++.+.+|.|.+||.+... .+.   .-..+.....+.|+|. 
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            999999999888777752  235899999999 58889999999999999998654 222   2233455788999995 


Q ss_pred             CCEEEEecCCCcEEEEECCCCce-eeeecccc-----cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee-eeEeecC
Q 010470          363 GQTIFSGHIDGNLRLWDIQTGKL-LSEVAAHS-----LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CGSLRAT  435 (510)
Q Consensus       363 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~  435 (510)
                      ..+|++.+..|-+-+||.+.... +.......     ...-.++.|+|+|+.|.+--....-.+||+-+..+ +..+...
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N  286 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN  286 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence            45677888889999999987542 22211111     12335788999999998887777777888876433 3333211


Q ss_pred             --CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc-----------------------ceeecccccCcCEEEEEE
Q 010470          436 --GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA-----------------------DIVRTLKEHTAPVLSCSW  490 (510)
Q Consensus       436 --~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~~~~~  490 (510)
                        +....+.+.+++|..|- .+++|+.+-.|++|.+...                       +.+..+++|.+-++.+.|
T Consensus       287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF  365 (609)
T KOG4227|consen  287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF  365 (609)
T ss_pred             CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence              11222334446665544 4999999999999987531                       124557899999999999


Q ss_pred             eCCCCcEEEeeCCCeEEEcC
Q 010470          491 SGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       491 ~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|...+|++.|-.+.+++|+
T Consensus       366 ~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  366 SQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             cCCcceEeccchhhheeccc
Confidence            99999999999999999995

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.93  E-value=2e-24  Score=177.60  Aligned_cols=288  Identities=18%  Similarity=0.236  Sum_probs=204.8

Q ss_pred             CCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeE
Q 010470          213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNL  291 (510)
Q Consensus       213 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i  291 (510)
                      +|+.+.+.+++|.+.|+++.|..++ +|.+|..-|.|.+|++.+......+. .+...|+.+...|+ ..+.+-+.|+.+
T Consensus         2 ~pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L   79 (323)
T KOG0322|consen    2 VPPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL   79 (323)
T ss_pred             CCCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence            4677888999999999999999877 59999999999999999998888887 56778899988887 568899999999


Q ss_pred             EEEEcCCCCeeEeecCCCCceEEEEEecC----CC----CEEEEEeCCC-cEEEEECCCCeEeeeeeec-----CceeEE
Q 010470          292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKI----SS----RHVVSAAYDR-TLKVWDLHKGYCVNTIIFH-----SNCNAL  357 (510)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----~~----~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-----~~i~~i  357 (510)
                      .+|++.-+..+..   |.-.+.++.|.+.    ++    ..++.-+... .+.+-|......+......     +.+.|.
T Consensus        80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   80 ILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence            9999986554322   3333344444331    00    1111111000 1122222111111111111     235555


Q ss_pred             EEcC-CCC--EEEEecCCCcEEEEECCCCceee----------eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          358 AFSM-DGQ--TIFSGHIDGNLRLWDIQTGKLLS----------EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       358 ~~~~-~~~--~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      .+.. ++.  ++++|..+|.+.+||+.++..+.          ....+. .++.++.|.+.-..=++|+.+..+..|++.
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~-qpvlsldyas~~~rGisgga~dkl~~~Sl~  235 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK-QPVLSLDYASSCDRGISGGADDKLVMYSLN  235 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc-CcceeeeechhhcCCcCCCccccceeeeec
Confidence            5322 333  45689999999999999874333          333344 789999999877777788888888888876


Q ss_pred             Cc----eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          425 SL----EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       425 ~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      ..    +..........    .+..+.+-||++.+|+++.||+|+||+..+..++..++.|...|++++|+|+...++++
T Consensus       236 ~s~gslq~~~e~~lknp----Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaa  311 (323)
T KOG0322|consen  236 HSTGSLQIRKEITLKNP----GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAA  311 (323)
T ss_pred             cccCcccccceEEecCC----CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhc
Confidence            32    11122222222    23347899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEcC
Q 010470          501 DKNGVVCVWT  510 (510)
Q Consensus       501 ~~dg~i~iwd  510 (510)
                      +.|+.|.+|+
T Consensus       312 skD~rISLWk  321 (323)
T KOG0322|consen  312 SKDARISLWK  321 (323)
T ss_pred             cCCceEEeee
Confidence            9999999995

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.4e-23  Score=175.31  Aligned_cols=209  Identities=22%  Similarity=0.304  Sum_probs=174.4

Q ss_pred             cccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCCCC----------eeE-----eecCCCCceEEEEEecCCCCEEEE
Q 010470          264 YGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNSGR----------VRH-----TLTGHTDKVCAVDVSKISSRHVVS  327 (510)
Q Consensus       264 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~----------~~~-----~~~~~~~~v~~i~~~~~~~~~l~s  327 (510)
                      ..|.+.|+++.+.+ .|+|+++|+.||.|.+||+....          ...     .-.+|.-.|.++.|.|.+..+|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45778999998876 58899999999999999997532          111     124688889999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCC---CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC
Q 010470          328 AAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMD---GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR  404 (510)
Q Consensus       328 ~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~  404 (510)
                      ++.|.+++|||.++-+....|..+..|.+-+++|-   .-++++|..+-.|++.|+.+|.....+.+|. ..|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr-~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR-DGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc-CceEEEEecc
Confidence            99999999999999999999999999999999983   3467789999999999999999999999998 9999999999


Q ss_pred             CCCE-EEEEecCCcEEEEEcCCc-eeeeEeecCC----------CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470          405 SGNI-ILTSGRDNLHNLFDIRSL-EVCGSLRATG----------NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       405 ~~~~-l~~~~~d~~i~i~d~~~~-~~~~~~~~~~----------~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  472 (510)
                      ...+ |++|+.||.|++||++.. .....+..+.          ..+...+..++|+.+|.++++++.|..+++|+..+|
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence            8775 678999999999999864 3333333222          122335667999999999999999999999999877


Q ss_pred             c
Q 010470          473 D  473 (510)
Q Consensus       473 ~  473 (510)
                      +
T Consensus       279 ~  279 (397)
T KOG4283|consen  279 R  279 (397)
T ss_pred             c
Confidence            5

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-23  Score=177.58  Aligned_cols=236  Identities=16%  Similarity=0.297  Sum_probs=183.5

Q ss_pred             eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee
Q 010470          270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII  349 (510)
Q Consensus       270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  349 (510)
                      ..|+.|++.|.+|++|+.||.|.|||+.+...-+.+.+|..+|++++|++ +++.|+++|.|..|.+||+..|.+++.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            68999999999999999999999999999999899999999999999999 99999999999999999999999999999


Q ss_pred             ecCceeEEEEcCCCC-EEEEecCCCcEEEEECCCCceeeeecccc----cccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          350 FHSNCNALAFSMDGQ-TIFSGHIDGNLRLWDIQTGKLLSEVAAHS----LAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       350 ~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      ..++|....|+|... .+++.-.+..-.+.++..++.. .+....    .....+..|.+.|+++++|...|.+.+||..
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence            999999999999433 3333333333444454432211 111111    1122334689999999999999999999999


Q ss_pred             CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-------cce--eecccc--cCcCEEEEEEeCC
Q 010470          425 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-------ADI--VRTLKE--HTAPVLSCSWSGL  493 (510)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~--~~~~~~--~~~~v~~~~~~~~  493 (510)
                      +.+++..++...   ...+..+-++..|++|+..+.|..|+.|++..       +++  ...+..  ....-.+++|+.+
T Consensus       184 t~e~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  184 TLECVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             hheeeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence            999988887665   23344588999999999999999999999762       121  122221  2234568899999


Q ss_pred             CCcEEEeeC-CCeEEEcC
Q 010470          494 GKPLASADK-NGVVCVWT  510 (510)
Q Consensus       494 ~~~l~s~~~-dg~i~iwd  510 (510)
                      |.|++.++. -..++||.
T Consensus       261 geYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  261 GEYVCAGSARAHALYIWE  278 (405)
T ss_pred             ccEEEeccccceeEEEEe
Confidence            999887764 45688884

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=1e-23  Score=178.80  Aligned_cols=287  Identities=20%  Similarity=0.305  Sum_probs=212.8

Q ss_pred             ccccccceEEEEEec-----CCCEEEEeeCCCeEEEEeCCCCc---ceeccc--ccccceeEEEEecC----CCEEEEEe
Q 010470          221 INAHEGGCASILFEY-----NSARLISGGQDKSIKLWDTNTGS---LSSTLY--GCLGSVLDLAITHD----NRSVIAAS  286 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~-----~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~  286 (510)
                      ...|+.+|..++|++     ....+++.|. ..+.+|.....-   .+..+.  .|......++|+-+    +.++++++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            457889999999985     2345666664 578888875432   222222  36667778888654    45788899


Q ss_pred             CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec----CceeEEEEcCC
Q 010470          287 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH----SNCNALAFSMD  362 (510)
Q Consensus       287 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~i~~~~~  362 (510)
                      .-|.|+|.|+.++++...+.+|...|..+.++|...++++++|.|..|++|++.+..++..+.+-    ..|.++.|+++
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~  192 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD  192 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence            99999999999999999999999999999999988899999999999999999999999988643    45999999999


Q ss_pred             CCEEEEecCCCcEEEEECCCCceeeeec---------------------------ccccccEEEEEEcCCCCEEEEEecC
Q 010470          363 GQTIFSGHIDGNLRLWDIQTGKLLSEVA---------------------------AHSLAAVTSISLSRSGNIILTSGRD  415 (510)
Q Consensus       363 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------------------~~~~~~i~~i~~~~~~~~l~~~~~d  415 (510)
                      |.+|++++.|..|.+|++...+....+.                           ..+...|.|+.|-  |+++++-+-+
T Consensus       193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce  270 (385)
T KOG1034|consen  193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE  270 (385)
T ss_pred             CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence            9999999999999999997432111110                           0011233334432  6788998899


Q ss_pred             CcEEEEEcCC-ceeeeEe---------ecCCCeeec--CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee--cccc-
Q 010470          416 NLHNLFDIRS-LEVCGSL---------RATGNRVAS--NWSRSCISPDESYVAAGSADGSVYIWSISKADIVR--TLKE-  480 (510)
Q Consensus       416 ~~i~i~d~~~-~~~~~~~---------~~~~~~~~~--~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-  480 (510)
                      +.|..|.... .+.+...         .+......+  .+...+|.|-++.||.|...|.|++||+.+..+..  ++.. 
T Consensus       271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s  350 (385)
T KOG1034|consen  271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS  350 (385)
T ss_pred             ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence            9999998721 2211111         111111111  23345677889999999999999999999877632  2211 


Q ss_pred             -cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          481 -HTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       481 -~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                       ....|...+|+.||..|+..++||.|.-||
T Consensus       351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence             245688999999999999999999999886

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.7e-22  Score=185.83  Aligned_cols=270  Identities=18%  Similarity=0.327  Sum_probs=213.9

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeecccc-ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAH-EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      .++-+..+|.+.+|+.....+        +...+.|| ++.|.+++|+ +|..|++.+.+|.|.-||+.+++....+...
T Consensus        39 ~lAvsRt~g~IEiwN~~~~w~--------~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~  109 (691)
T KOG2048|consen   39 QLAVSRTDGNIEIWNLSNNWF--------LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN  109 (691)
T ss_pred             ceeeeccCCcEEEEccCCCce--------eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCC
Confidence            366677899999999766433        44455555 4579999999 5568888899999999999999999999999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE--eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH--TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC  344 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  344 (510)
                      .+.|++++.+|.+..+++|+.||.++.++...++...  .+....+.|.+++|+| ++..+++|+.||.|++||..++..
T Consensus       110 gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t  188 (691)
T KOG2048|consen  110 GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQT  188 (691)
T ss_pred             CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCce
Confidence            9999999999999999999999988888887776543  3445678999999999 888899999999999999999887


Q ss_pred             eeeeee-----cC--c--eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470          345 VNTIIF-----HS--N--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD  415 (510)
Q Consensus       345 ~~~~~~-----~~--~--i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  415 (510)
                      +.....     ..  +  +.++.+- ....|++|...|+|.+||...+..+..+..+. ..|.+++..++++++++++.|
T Consensus       189 ~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~-adVl~Lav~~~~d~vfsaGvd  266 (691)
T KOG2048|consen  189 LHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHD-ADVLALAVADNEDRVFSAGVD  266 (691)
T ss_pred             EEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhh-cceeEEEEcCCCCeEEEccCC
Confidence            763321     12  1  5666666 44578999999999999999999999999888 899999999999999999999


Q ss_pred             CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      +.|..|...+...-.............+.+++..++  .+++|+.|+.+.+-....
T Consensus       267 ~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  267 PKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             CceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence            999988877653311111111122223334666655  899999999988876544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.2e-24  Score=211.32  Aligned_cols=276  Identities=17%  Similarity=0.283  Sum_probs=213.5

Q ss_pred             EEEEecCCC-EEEEe----------eCCCeEEEEeCCC--Cc----ceecccccccceeEEEEecCCCE----EEEEeCC
Q 010470          230 SILFEYNSA-RLISG----------GQDKSIKLWDTNT--GS----LSSTLYGCLGSVLDLAITHDNRS----VIAASSS  288 (510)
Q Consensus       230 ~~~~s~~~~-~l~s~----------~~dg~i~iwd~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d  288 (510)
                      .++|+|.+. ++++|          +.+.++-||.+.-  ..    .+..+ ......+.++|.+.|..    |+.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence            467888776 45544          3355666776532  22    22222 23456789999988876    7777899


Q ss_pred             CeEEEEEcCC---C---CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee---eecCceeEEEE
Q 010470          289 NNLYVWDVNS---G---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALAF  359 (510)
Q Consensus       289 ~~i~iwd~~~---~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~i~~i~~  359 (510)
                      |.|.+||...   +   ..+.+...|.+.|..+.|++..++.+++|+.||.|.|||+.+-..-...   ...+.|.+++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            9999999865   2   2456677899999999999988889999999999999999864433333   23356999999


Q ss_pred             cC-CCCEEEEecCCCcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCC-EEEEEecCC---cEEEEEcCC-ceeeeEe
Q 010470          360 SM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGN-IILTSGRDN---LHNLFDIRS-LEVCGSL  432 (510)
Q Consensus       360 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~-~l~~~~~d~---~i~i~d~~~-~~~~~~~  432 (510)
                      +. ....|++++.+|.+.|||++..+++..+..+.. ..+..+.|+|++. .+++++.|.   .|.+||+|. ..+.+.+
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~  249 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL  249 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence            87 445677899999999999999988888876643 4588999999865 455554443   799999985 4455666


Q ss_pred             ecCCCeeecCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEeeCCCeEEEcC
Q 010470          433 RATGNRVASNWSRSCISPDE-SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASADKNGVVCVWT  510 (510)
Q Consensus       433 ~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd  510 (510)
                      .+|...+.+    +.|++.+ .++++++.|+.|.+|+.++++.+..+....+.+..+.|+|... .++.++.||.|.||+
T Consensus       250 ~~H~~Gils----lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  250 EGHQRGILS----LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             cccccceee----eccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence            677666554    8888865 8999999999999999999999999998888999999999887 778889999999874

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.6e-23  Score=181.21  Aligned_cols=270  Identities=18%  Similarity=0.277  Sum_probs=197.2

Q ss_pred             EEEecCCCEEEEeeCCC---e--EEEEeCCCCcceeccccc-----ccceeEEEEec-------CCCEEEEEeCCCeEEE
Q 010470          231 ILFEYNSARLISGGQDK---S--IKLWDTNTGSLSSTLYGC-----LGSVLDLAITH-------DNRSVIAASSSNNLYV  293 (510)
Q Consensus       231 ~~~s~~~~~l~s~~~dg---~--i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~-------~~~~l~~~~~d~~i~i  293 (510)
                      +..-|..++++++-.+.   .  |+||+-...    .+..|     .....|+.|..       .|+|++.|+.|..|.|
T Consensus       131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~----nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI  206 (463)
T KOG0270|consen  131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEE----NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI  206 (463)
T ss_pred             ceeccCCcEEEEeeccCCceEEEEEEEcCCCc----ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence            44456556666664432   2  555554321    12222     22335666643       3679999999999999


Q ss_pred             EEcCCCC---ee------------------EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-
Q 010470          294 WDVNSGR---VR------------------HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-  351 (510)
Q Consensus       294 wd~~~~~---~~------------------~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-  351 (510)
                      ||+.--.   +.                  ....+|++.|.++.|+....+.|++||.|.+|++||+.++++..++..+ 
T Consensus       207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~  286 (463)
T KOG0270|consen  207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG  286 (463)
T ss_pred             eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence            9985210   11                  1123689999999999877899999999999999999999999999865 


Q ss_pred             CceeEEEEcC-CCCEEEEecCCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCc-e
Q 010470          352 SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSL-E  427 (510)
Q Consensus       352 ~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~-~  427 (510)
                      ..|.++.|+| ...+|++|+.|++|.++|.|... .-..+...  +.|-.+.|.|.. ..++++..||+++-+|+|+. +
T Consensus       287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~--g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~  364 (463)
T KOG0270|consen  287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD--GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK  364 (463)
T ss_pred             CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec--cceEEEEecCCCceeEEEecCCceEEeeecCCCCC
Confidence            5699999999 56688899999999999999532 22233332  789999999964 56778889999999999975 8


Q ss_pred             eeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcce--eecccccCcCEEEEEEeCCCC-cEEEeeCC
Q 010470          428 VCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKADI--VRTLKEHTAPVLSCSWSGLGK-PLASADKN  503 (510)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d  503 (510)
                      ++.++..|...+.+    +++++. ..++++++.|+.|++|++....+  +..-.-.-+...|+++.|+-. .++.||..
T Consensus       365 ~vwt~~AHd~~ISg----l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k  440 (463)
T KOG0270|consen  365 PVWTLKAHDDEISG----LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK  440 (463)
T ss_pred             ceeEEEeccCCcce----EEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCcc
Confidence            89999999887765    888764 55788999999999999875443  222111223456777777765 57788888


Q ss_pred             CeEEEcC
Q 010470          504 GVVCVWT  510 (510)
Q Consensus       504 g~i~iwd  510 (510)
                      +.++|||
T Consensus       441 ~~~~vwd  447 (463)
T KOG0270|consen  441 AVLRVWD  447 (463)
T ss_pred             ceEEEee
Confidence            8899997

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=2.5e-23  Score=191.16  Aligned_cols=250  Identities=22%  Similarity=0.309  Sum_probs=182.8

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec--ccccccceeEEEEecCCC-EEEEEeCCCeEEEE
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNR-SVIAASSSNNLYVW  294 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw  294 (510)
                      .....+|.+.|..+.|-|....|++++.|.++++||+.++.+...  +.+|.+.|.++||.|.+. .|++|+.||.|.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            455678999999999999777899999999999999999988777  889999999999999765 57788899999999


Q ss_pred             EcCCCC---------------------------eeEeecCCCCceEE---EEEecCCCCEEEEEeC-CCcEEEEECCCCe
Q 010470          295 DVNSGR---------------------------VRHTLTGHTDKVCA---VDVSKISSRHVVSAAY-DRTLKVWDLHKGY  343 (510)
Q Consensus       295 d~~~~~---------------------------~~~~~~~~~~~v~~---i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~  343 (510)
                      |++-..                           -+.....+...|.+   +.+.. +...|++++. |+.|+|||++..+
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccc
Confidence            986321                           01111233344444   33444 6788888887 9999999998765


Q ss_pred             Eeeeee--------ec----CceeEEEEcCCCCEEEEecCCCcEEEEECCCCc--eeeeeccccccc-EEEEEEcCCCCE
Q 010470          344 CVNTII--------FH----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK--LLSEVAAHSLAA-VTSISLSRSGNI  408 (510)
Q Consensus       344 ~~~~~~--------~~----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~-i~~i~~~~~~~~  408 (510)
                      ......        .+    ..+.++.....|.++++.+.|+.|++|++.+..  ++..+.++.... -..-..+|++.+
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS  331 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence            433221        11    237788888889999988889999999997643  333333332111 122346899999


Q ss_pred             EEEEecCCcEEEEEcCCcee-eeEeecCCCeeecCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCc
Q 010470          409 ILTSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCISPDE-SYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       409 l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~  472 (510)
                      +++|+.|...++|.+.+.+. ...+.+|...+..    ++|.|.. .-++++++|.+++||++.++
T Consensus       332 l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~----V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  332 LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT----VRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EeccCCCcceeeeeecCccCChhhhhCcceEEEE----EeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999999987543 3334455544443    7776632 33666699999999998654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=2.7e-22  Score=186.12  Aligned_cols=315  Identities=20%  Similarity=0.279  Sum_probs=236.4

Q ss_pred             HHhhhhcCCceEEeccccccc-ccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC---cceec
Q 010470          187 EKLAKQQVDGVVRRSEEGAEF-FAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSST  262 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~  262 (510)
                      ..+.+.+.|..+.+|.++... ....   ........|..++..+..|+|+++.+++-+..|-.++|.....   .....
T Consensus       280 ~~LLSASaDksmiiW~pd~~tGiWv~---~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~  356 (764)
T KOG1063|consen  280 LDLLSASADKSMIIWKPDENTGIWVD---VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPV  356 (764)
T ss_pred             hhheecccCcceEEEecCCccceEEE---EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccc
Confidence            457778899999999876531 1111   1123333466778999999999999999999999999983221   23445


Q ss_pred             ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC----eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      +.||.+.|.+++|+|.|.+|++.+.|.+-++|-.-..+    .+..-+-|...++|+++-+ ....|++|.....+++|+
T Consensus       357 iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~  435 (764)
T KOG1063|consen  357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFE  435 (764)
T ss_pred             cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeec
Confidence            67999999999999999999999999999998754111    2233356888899999987 577889998888999996


Q ss_pred             CCC-------------------------------------------CeE-------------------------------
Q 010470          339 LHK-------------------------------------------GYC-------------------------------  344 (510)
Q Consensus       339 ~~~-------------------------------------------~~~-------------------------------  344 (510)
                      ...                                           |..                               
T Consensus       436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw  515 (764)
T KOG1063|consen  436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW  515 (764)
T ss_pred             CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence            421                                           000                               


Q ss_pred             --eeeeeec-CceeEEEEcCCCCEEEEecCCC-----cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC
Q 010470          345 --VNTIIFH-SNCNALAFSMDGQTIFSGHIDG-----NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN  416 (510)
Q Consensus       345 --~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~  416 (510)
                        +.++.+| ..+.+++.+|+|+++++++...     .|++|+..+-.....+..|. -.|+.+.|||||++|++.++|.
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs-LTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS-LTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc-eEEEEEEECCCCcEEEEeecCc
Confidence              0111122 3489999999999999987543     59999998888888888887 8999999999999999999999


Q ss_pred             cEEEEEcCCceee----eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc--ceeec--ccccCcCEEEE
Q 010470          417 LHNLFDIRSLEVC----GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA--DIVRT--LKEHTAPVLSC  488 (510)
Q Consensus       417 ~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~~  488 (510)
                      ++.+|........    ...+.|..    -+..+.|+|++.+++++|.|.+|.||.....  +.+..  ...+..+|+.+
T Consensus       595 t~sl~~~~~~~~~e~~fa~~k~HtR----IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv  670 (764)
T KOG1063|consen  595 TVSLYEVQEDIKDEFRFACLKAHTR----IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAV  670 (764)
T ss_pred             eEEeeeeecccchhhhhccccccce----EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeE
Confidence            9999987532211    11223333    3344789999999999999999999998877  44333  23478899999


Q ss_pred             EEeCC-----CCcEEEeeCCCeEEEcC
Q 010470          489 SWSGL-----GKPLASADKNGVVCVWT  510 (510)
Q Consensus       489 ~~~~~-----~~~l~s~~~dg~i~iwd  510 (510)
                      +|.|-     +..++.|-..|.|.+|.
T Consensus       671 ~~~~~~~~e~~~~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  671 AYLPVDHNEKGDVVAVGLEKGEIVLWR  697 (764)
T ss_pred             EeeccccccccceEEEEecccEEEEEe
Confidence            99874     22567788899999984

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=1.7e-22  Score=178.84  Aligned_cols=277  Identities=19%  Similarity=0.261  Sum_probs=210.3

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcce--ecc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLS--STL  263 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~--~~~  263 (510)
                      ..++.|..-|.|-+|+.+.+     .....-+..+..|.++|+++.|+| +...+++.|.||+|++-|++.+...  ..+
T Consensus       201 ~lva~GdK~G~VG~Wn~~~~-----~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~  275 (498)
T KOG4328|consen  201 KLVAVGDKGGQVGLWNFGTQ-----EKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL  275 (498)
T ss_pred             eEEEEccCCCcEEEEecCCC-----CCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc
Confidence            34556677788888886521     112235667889999999999999 4568999999999999999876543  333


Q ss_pred             cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe-eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~  342 (510)
                      ......+.++.|+.+...++++..=|...+||.+++.. ...+.-|...|++++++|....+++++|.|++.+|||++.-
T Consensus       276 ~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l  355 (498)
T KOG4328|consen  276 DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQL  355 (498)
T ss_pred             CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhh
Confidence            33556778888998888899998888999999998764 66677788999999999999999999999999999999853


Q ss_pred             e-----EeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECC----CCceeeeeccccc----ccEEEEEEcCCCCEE
Q 010470          343 Y-----CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ----TGKLLSEVAAHSL----AAVTSISLSRSGNII  409 (510)
Q Consensus       343 ~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~----~~i~~i~~~~~~~~l  409 (510)
                      .     .+.++.+...|++..|+|++-.|++.+.|..|+|||..    ...+...+...+.    -.+.-..|.|+.+++
T Consensus       356 ~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li  435 (498)
T KOG4328|consen  356 RGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLI  435 (498)
T ss_pred             cCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEE
Confidence            2     24445555679999999988889999999999999983    3333333332221    134456899999999


Q ss_pred             EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE-EEEEcCCCeEEEEeCC
Q 010470          410 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY-VAAGSADGSVYIWSIS  470 (510)
Q Consensus       410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~  470 (510)
                      ++|..-..|-|||-..++.+..+..+......  +...|+|-+.. ++.|+..|.|+||.-.
T Consensus       436 ~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~--~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  436 VVGRYPRPIDVFDGNGGQMVCELHDPESSTIP--SVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             EEeccCcceeEEcCCCCEEeeeccCccccccc--cceeecccccceeccCCccceEEEEecC
Confidence            99999999999999999877776544432222  23678998884 4555567889998644

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=2.8e-22  Score=174.84  Aligned_cols=290  Identities=19%  Similarity=0.284  Sum_probs=205.1

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCC--------C---
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN--------T---  256 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--------~---  256 (510)
                      .++++..|..+++|...................+..|...|+++.|+|+|..|++|+.+|.|.+|...        +   
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~  107 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD  107 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence            68899999999999865543333333445667889999999999999999999999999999999765        2   


Q ss_pred             -----CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC
Q 010470          257 -----GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD  331 (510)
Q Consensus       257 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d  331 (510)
                           ......+.+|...|..++|+|++.++++++.|+.+++||+..|.....+..|...|..++|.| -+.++++-+.|
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~d  186 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSD  186 (434)
T ss_pred             hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccC
Confidence                 112345678999999999999999999999999999999999999999999999999999999 78899999989


Q ss_pred             CcEEEEECCCCeEeeeee--------------------ec----CceeEEEEcCCCCEEEEecC----CCcE-----EEE
Q 010470          332 RTLKVWDLHKGYCVNTII--------------------FH----SNCNALAFSMDGQTIFSGHI----DGNL-----RLW  378 (510)
Q Consensus       332 g~i~iwd~~~~~~~~~~~--------------------~~----~~i~~i~~~~~~~~l~~~~~----dg~i-----~i~  378 (510)
                      ...+.+.+.....+....                    +.    +-...++|+|+|..+++...    .|.+     ++|
T Consensus       187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvf  266 (434)
T KOG1009|consen  187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVF  266 (434)
T ss_pred             cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEee
Confidence            877777765433322221                    00    11456778888888886532    1222     233


Q ss_pred             ECCC-CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEE
Q 010470          379 DIQT-GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA  457 (510)
Q Consensus       379 d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  457 (510)
                      +-.. .++...+.... .+...+.|+|              ..|.++....      ...        +..-|.+-.+++
T Consensus       267 srk~l~rP~~~lp~~~-k~~lavr~~p--------------Vy~elrp~~~------~~~--------~~~lpyrlvfai  317 (434)
T KOG1009|consen  267 SRKDLKRPAARLPSPK-KPALAVRFSP--------------VYYELRPLSS------EKF--------LFVLPYRLVFAI  317 (434)
T ss_pred             ccccccCceeecCCCC-cceEEEEeee--------------eEEEeccccc------ccc--------ccccccceEEEE
Confidence            2211 11122222221 2222333322              1233321100      000        112355566777


Q ss_pred             EcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          458 GSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       458 ~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      ++.| .|+|||..+-.++....+ |-.+|++++|++||..|+..+.||...+
T Consensus       318 At~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  318 ATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             eecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence            7765 599999999888877755 8999999999999999999999998643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=8.6e-22  Score=166.51  Aligned_cols=241  Identities=21%  Similarity=0.273  Sum_probs=176.6

Q ss_pred             ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-----eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470          261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK  335 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~  335 (510)
                      ..+.+|.+.|++++|+.||++|++++.|+.|++|+++...     +++. +-.-+..+.+.|.|+...+++++-...+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            4578999999999999999999999999999999997632     1111 112235678899997777888888788999


Q ss_pred             EEECCCC---eEeeeee------ec----CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEE
Q 010470          336 VWDLHKG---YCVNTII------FH----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISL  402 (510)
Q Consensus       336 iwd~~~~---~~~~~~~------~~----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~  402 (510)
                      +|.+...   .....+.      .+    -.+..+-+..++.+|++++.|..|.+|+++ |+.+..+.... ..-+..++
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-~~n~~aav  236 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-SSNYDAAV  236 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc-ccccceee
Confidence            9976432   1111110      11    124556666788999999999999999997 99888888776 67778899


Q ss_pred             cCCCCEEEEEecCCcEEEEEcC---Cc-----eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC---
Q 010470          403 SRSGNIILTSGRDNLHNLFDIR---SL-----EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK---  471 (510)
Q Consensus       403 ~~~~~~l~~~~~d~~i~i~d~~---~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~---  471 (510)
                      ||+|+++++++..-.|++|.+-   .|     ..+..+.+|...+..    ++|+++...+++.+.||+++|||++-   
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~----~aFsn~S~r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLA----AAFSNSSTRAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheee----eeeCCCcceeEEEecCCcEEEeeccceEe
Confidence            9999999999999999999863   22     223445556555544    89999999999999999999999753   


Q ss_pred             -c---ceeeccc----ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          472 -A---DIVRTLK----EHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       472 -~---~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                       +   +.+++..    .-.+....++.+|.|..|+.+.. ..+++|
T Consensus       313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~  357 (420)
T KOG2096|consen  313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVF  357 (420)
T ss_pred             cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEE
Confidence             1   2222221    12233458999999998876543 345443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-22  Score=180.40  Aligned_cols=257  Identities=17%  Similarity=0.210  Sum_probs=196.6

Q ss_pred             CCeEEEEeCCCCcceeccccc--ccceeEEEEecCCCEEEEEe--CCCeEEEEEcCCCC---eeEeecCCCCceEEEEEe
Q 010470          246 DKSIKLWDTNTGSLSSTLYGC--LGSVLDLAITHDNRSVIAAS--SSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVS  318 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~  318 (510)
                      ...+++||.........+..|  ...+.+++|...+. |++++  .|..+++|.-. |+   ....-....+.-.|+...
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~~~Cv~~~   88 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDNAFCVACA   88 (673)
T ss_pred             CCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEeccc-CCCCccceeeccccchHHHHhhh
Confidence            347999998765443333322  33588999987665 44443  67788999743 33   111111122244555554


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccE
Q 010470          319 KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAV  397 (510)
Q Consensus       319 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i  397 (510)
                      . ...++++|+..+.|+|||++...+.+.+..| +.|+++.++....+|++++..|.|.|..+.++.....|.......+
T Consensus        89 s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv  167 (673)
T KOG4378|consen   89 S-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV  167 (673)
T ss_pred             h-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence            4 4589999999999999999977777777666 4599999999999999999999999999999988888887765778


Q ss_pred             EEEEEcCCCCE-EEEEecCCcEEEEEcCCceeeeEee-cCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcce
Q 010470          398 TSISLSRSGNI-ILTSGRDNLHNLFDIRSLEVCGSLR-ATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       398 ~~i~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      .-+.|+|..++ |.+++.+|.|.+||+....++..+. .|..+...    +||+|. ..+|++.+.|..|.+||+.....
T Consensus       168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~g----icfspsne~l~vsVG~Dkki~~yD~~s~~s  243 (673)
T KOG4378|consen  168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRG----ICFSPSNEALLVSVGYDKKINIYDIRSQAS  243 (673)
T ss_pred             EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCc----ceecCCccceEEEecccceEEEeecccccc
Confidence            89999998774 5678899999999999877665543 45555544    899995 55788899999999999998777


Q ss_pred             eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       475 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ...+. ...|...++|+++|.+|+.|+..|.|+.||
T Consensus       244 ~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  244 TDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             cceee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence            76665 456889999999999999999999999987

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.90  E-value=7.8e-24  Score=200.03  Aligned_cols=276  Identities=21%  Similarity=0.344  Sum_probs=220.6

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      .+..+.||.+.|.|+.|+..|.++++|+.|..|+||..+++.++....||.+.|+.++.+.++.++++++.|..|++|.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee------eecCceeEEEEcCCCCEEEEec
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI------IFHSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~~~  370 (510)
                      .++.++..+.+|++.|++++|+|.     .+.+.||++++||.+- .++...      ....-+.++.|..++.-+.+|+
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccc-cccccCCCCCCcccccceeeeecccccccccccc
Confidence            999999999999999999999992     2778899999999871 111111      1123367778888888999999


Q ss_pred             CCCcEEEEECCCCceeeeecccccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470          371 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       371 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                      .|+.-..|.+.....      +. ..+.-+.++.+ ..+.+++-.+..+.+|++.++...+.+.++......    +.++
T Consensus       336 ~d~ea~n~e~~~l~~------~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yv----Ld~H  404 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAW------RS-NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYV----LDVH  404 (1113)
T ss_pred             CCcccccchhhHhhh------hc-cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceee----eeec
Confidence            999888876542110      00 11111111111 245666667778999999999888888887776654    7888


Q ss_pred             CCC-CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          450 PDE-SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       450 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      |-. ....+++.||+..|||+-.|.+++.+....+.+....||++|..++....-|.++|.
T Consensus       405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence            854 455678999999999999998877665445667888999999999988888888875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1e-22  Score=184.89  Aligned_cols=259  Identities=20%  Similarity=0.319  Sum_probs=202.8

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC--------CcceecccccccceeEEEEecCCCEEEEEeCC
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT--------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSS  288 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  288 (510)
                      ...++..|...|..++|.|....|++++.||.+++|++..        -+++.++.+|.++|.|+++.+++..+++|+.|
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D  365 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID  365 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence            4457889999999999999999999999999999999932        24577889999999999999999999999999


Q ss_pred             CeEEEEEcCCC----------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee---cCcee
Q 010470          289 NNLYVWDVNSG----------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF---HSNCN  355 (510)
Q Consensus       289 ~~i~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~i~  355 (510)
                      |+|+.|++...          .....+.||.+.|+.+++++ ....|++++.||+++.|+.....+ .++..   +.-+.
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            99999976522          23456789999999999998 677899999999999999876665 33332   23366


Q ss_pred             EEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecccc------cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee
Q 010470          356 ALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHS------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV  428 (510)
Q Consensus       356 ~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~  428 (510)
                      ++.+-... .+.++...-+.-.++++..+..+..+....      ...+.-+.++|.+.+.+++..|+.|+++|..++.+
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence            67665433 223333333434444544444444443221      13467788999999999999999999999999999


Q ss_pred             eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc
Q 010470          429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH  481 (510)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  481 (510)
                      +.....+...+.+    +++.|+|-+|++|+.||.+++|.+....++.....|
T Consensus       524 l~s~~a~~~svts----lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  524 LHSMVAHKDSVTS----LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             chheeeccceecc----eeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            9888888777665    999999999999999999999999877766555444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-22  Score=181.28  Aligned_cols=293  Identities=21%  Similarity=0.290  Sum_probs=232.3

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecC--CCEEEEEeCCCeEE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHD--NRSVIAASSSNNLY  292 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~  292 (510)
                      .....|.+|.|.|..|.|+..|..|++|+.|..|.+||+..++....+. +|...|..-.|-|.  ...+++++.||.|+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            3556788999999999999999999999999999999999888766654 78888888888774  45789999999999


Q ss_pred             EEEcCCC-Ce--eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec----C---ceeEEEEcCC
Q 010470          293 VWDVNSG-RV--RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH----S---NCNALAFSMD  362 (510)
Q Consensus       293 iwd~~~~-~~--~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~---~i~~i~~~~~  362 (510)
                      +=.+... .+  ...+..|.++|.-++.-|.....|.+++.|+.+.-+|++.+.+...+...    .   ....++.+|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            8776433 22  34456799999999999988899999999999999999987665555422    1   2578888985


Q ss_pred             C-CEEEEecCCCcEEEEECCCCc------eeeeeccc-----ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC--c--
Q 010470          363 G-QTIFSGHIDGNLRLWDIQTGK------LLSEVAAH-----SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS--L--  426 (510)
Q Consensus       363 ~-~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~--~--  426 (510)
                      . ..+++|+.|-.+++||.+.-.      .+..+..+     ....|+++.|+.++.-++++..|-.|++|.-..  +  
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            5 488899999999999987532      22333322     235799999999999888999999999995432  2  


Q ss_pred             --------eeee-EeecCCCeeecCceeE-EEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc
Q 010470          427 --------EVCG-SLRATGNRVASNWSRS-CISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP  496 (510)
Q Consensus       427 --------~~~~-~~~~~~~~~~~~~~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  496 (510)
                              ..+. .+++|.+.-.  +-.+ -|-|...|+++|++-|.|.||+-.+++.+..+.+...-|+|+.-+|.-..
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~T--VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv  450 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRT--VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV  450 (559)
T ss_pred             CCCCcchhhccchhhcccccccc--cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence                    1111 2445444322  2223 36789999999999999999999999999999886668999999999999


Q ss_pred             EEEeeCCCeEEEcC
Q 010470          497 LASADKNGVVCVWT  510 (510)
Q Consensus       497 l~s~~~dg~i~iwd  510 (510)
                      |+++|-|..|+||.
T Consensus       451 LAsSGid~DVKIWT  464 (559)
T KOG1334|consen  451 LASSGIDHDVKIWT  464 (559)
T ss_pred             hhccCCccceeeec
Confidence            99999999999995

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=6.9e-23  Score=200.88  Aligned_cols=243  Identities=22%  Similarity=0.338  Sum_probs=199.0

Q ss_pred             cceEEEEEecCCCE----EEEeeCCCeEEEEeCCCC------cceecccccccceeEEEEecCCC-EEEEEeCCCeEEEE
Q 010470          226 GGCASILFEYNSAR----LISGGQDKSIKLWDTNTG------SLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVW  294 (510)
Q Consensus       226 ~~v~~~~~s~~~~~----l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw  294 (510)
                      ...+.++|.+.|..    ||.|..||.|.+||...-      ..+.+...|.+.|..+.|++... .|++|++||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45788999987776    889999999999998652      33667789999999999999876 89999999999999


Q ss_pred             EcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc---eeEEEEcCCCC-EEEE
Q 010470          295 DVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN---CNALAFSMDGQ-TIFS  368 (510)
Q Consensus       295 d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---i~~i~~~~~~~-~l~~  368 (510)
                      |+...+.-..+.  ...+.|.+++|+....++|++++.+|.+.|||++..+.+-.+..+..   +..+.|+|++. .+++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            998755444432  24678999999987788999999999999999998887777766654   88999999764 4555


Q ss_pred             ecCCC---cEEEEECCCCc-eeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470          369 GHIDG---NLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW  443 (510)
Q Consensus       369 ~~~dg---~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  443 (510)
                      ++.|.   .|.+||+|... +++.+..|. .+|.++.|++.+ .++++++.|+.|.+|+..+++.+..+...++.+..  
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~~H~-~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd--  301 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILEGHQ-RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD--  301 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhcccc-cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee--
Confidence            55443   59999998754 555565665 899999999976 89999999999999999999999999876666554  


Q ss_pred             eeEEEcCCCC-EEEEEcCCCeEEEEeCCCcc
Q 010470          444 SRSCISPDES-YVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       444 ~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  473 (510)
                        +.|+|... .|++.+.||.|.||.+.+..
T Consensus       302 --v~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  302 --VQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             --eeecCCCcchhhhheeccceeeeeeecCC
Confidence              88999655 78889999999999987654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=6.9e-22  Score=170.76  Aligned_cols=238  Identities=22%  Similarity=0.354  Sum_probs=180.4

Q ss_pred             cccccceeEEEEecCCC--EEEEEeCCCeEEEEEcCC----------------CCeeEeecCCCCceEEEEEecCCCCEE
Q 010470          264 YGCLGSVLDLAITHDNR--SVIAASSSNNLYVWDVNS----------------GRVRHTLTGHTDKVCAVDVSKISSRHV  325 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~v~~i~~~~~~~~~l  325 (510)
                      .+|.+.+..+.-++-++  +.++-+..|.|+||++..                .+++.++.+|...=++++|+|.....+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            35677777777776654  444446789999999852                257788899999999999999777889


Q ss_pred             EEEeCCCcEEEEECCCCeEee---eeeec-CceeEEEEcCCC-CEEEEecCCCcEEEEECCCCc--eeeeecccccccEE
Q 010470          326 VSAAYDRTLKVWDLHKGYCVN---TIIFH-SNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGK--LLSEVAAHSLAAVT  398 (510)
Q Consensus       326 ~s~~~dg~i~iwd~~~~~~~~---~~~~~-~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~  398 (510)
                      ++|..-+.|++|...+|....   .+..| ..|-.++|+|.. ..|++|+.||+|+|||+|.+.  .......|. +.|+
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~-sDVN  306 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN-SDVN  306 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC-Ccee
Confidence            999989999999998875322   12223 458999999954 578899999999999999872  222224444 8999


Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEcCC---ceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcce
Q 010470          399 SISLSRSGNIILTSGRDNLHNLFDIRS---LEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      .|.|+....+|++|+.||+++|||++.   ++++..|..|..++.+    +.|+|. ...|++++.|..|.+||+.-..-
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIts----ieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITS----IEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeE----EEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            999999988999999999999999985   5667788888777665    999994 56788888999999999853211


Q ss_pred             -----------ee-----ccccc--CcCEEEEEEeCCCC-cEEEeeCCCeE
Q 010470          475 -----------VR-----TLKEH--TAPVLSCSWSGLGK-PLASADKNGVV  506 (510)
Q Consensus       475 -----------~~-----~~~~~--~~~v~~~~~~~~~~-~l~s~~~dg~i  506 (510)
                                 +.     .+--|  ...|..+.|++.-+ +|++.+.||.-
T Consensus       383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn  433 (440)
T KOG0302|consen  383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN  433 (440)
T ss_pred             hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence                       11     11124  33577889998755 78888888753

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=4.6e-22  Score=182.75  Aligned_cols=123  Identities=20%  Similarity=0.346  Sum_probs=104.9

Q ss_pred             ceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCccee------cccccccceeEEEEecCCCEEEEEeCCC
Q 010470          217 CKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSS------TLYGCLGSVLDLAITHDNRSVIAASSSN  289 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~  289 (510)
                      .+..+.+|...|+.+.|+| +..+|++|+.|..|+||.+..|....      .+.+..-.|-++.|+|...-|+..+..|
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            4556889999999999999 44588999999999999997442211      1223345778999999888888888889


Q ss_pred             eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 010470          290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH  340 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~  340 (510)
                      .++|||+.+++....+.+|.+.|.+..|+. ++.++++++.|..|+|||.+
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPR  200 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPR  200 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCc
Confidence            999999999999999999999999999998 89999999999999999865

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.3e-21  Score=178.61  Aligned_cols=242  Identities=15%  Similarity=0.238  Sum_probs=195.4

Q ss_pred             ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 010470          261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH  340 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~  340 (510)
                      ..+.+|.+.|.++...|.|..|++|+.||+|+||.+.+|.++.++. ..+.|.|++|+|....-++.....+.+.|.+..
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            3467999999999999999999999999999999999999999987 567899999999655555555445555555432


Q ss_pred             CCe--------------------------------------EeeeeeecCceeEEEEcCCCCEEEEecC---CCcEEEEE
Q 010470          341 KGY--------------------------------------CVNTIIFHSNCNALAFSMDGQTIFSGHI---DGNLRLWD  379 (510)
Q Consensus       341 ~~~--------------------------------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d  379 (510)
                      -|.                                      .-..+.....|+.+.|+..|.+|++...   ...|.|++
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence            110                                      1122334456899999999999998654   34699999


Q ss_pred             CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      +...+....|.... +.|.++.|+|...+|++++. ..|+|||+.....+..+......+.    .++++|.|.-|+.|+
T Consensus       553 LSK~~sQ~PF~ksk-G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS----~msihp~GDnli~gs  626 (733)
T KOG0650|consen  553 LSKRKSQSPFRKSK-GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWIS----SMSIHPNGDNLILGS  626 (733)
T ss_pred             cccccccCchhhcC-CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeee----eeeecCCCCeEEEec
Confidence            98777666665554 88999999999999888865 4799999998777776655554444    489999999999999


Q ss_pred             CCCeEEEEeCCCc-ceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          460 ADGSVYIWSISKA-DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       460 ~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      .|+.+..||+.-+ ++.+++..|...+.+++|++.-+++++|+.||.+.||
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            9999999999764 6788899999999999999999999999999999886

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.8e-21  Score=166.28  Aligned_cols=270  Identities=17%  Similarity=0.281  Sum_probs=194.6

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEec--CCCEEEEEeCCCeEEEEEcCCCCe--eEeecCCC-Cce
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVWDVNSGRV--RHTLTGHT-DKV  312 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~-~~v  312 (510)
                      ..+|++.+.|.|++||..+++.+..+.++...+..+.|..  ....+++|+.||+|++||+++...  ...+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5788999999999999999999999999999999999977  467799999999999999987653  34444555 456


Q ss_pred             EEEEEecCCCCEEEEEeC----CCcEEEEECCCCeE-eeeee--ecCceeEEEEcC-CCCEEEEecCCCcEEEEECCCCc
Q 010470          313 CAVDVSKISSRHVVSAAY----DRTLKVWDLHKGYC-VNTII--FHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGK  384 (510)
Q Consensus       313 ~~i~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~-~~~~~--~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~  384 (510)
                      .+++.+- ..+++++|..    +-.|.+||++..+. +..+.  ++..|++++|+| +.+.|++|+.||.|.+||+....
T Consensus       121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            6666654 5667776653    67899999998765 55543  345699999999 66789999999999999986542


Q ss_pred             ---eeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCee-------ecCceeEEEcC-CC
Q 010470          385 ---LLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV-------ASNWSRSCISP-DE  452 (510)
Q Consensus       385 ---~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~-~~  452 (510)
                         .+.....+. +.|.++.|..++ +.|.+-+......+|++..+.....+..+....       ......-+.+| ++
T Consensus       200 EeDaL~~viN~~-sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~  278 (376)
T KOG1188|consen  200 EEDALLHVINHG-SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDK  278 (376)
T ss_pred             chhhHHHhhccc-ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCc
Confidence               122222222 679999999877 357788888999999998876544443321111       00111112334 44


Q ss_pred             CEEEEEcC-CCeEEEEeCC---C---cceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          453 SYVAAGSA-DGSVYIWSIS---K---ADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       453 ~~l~~~~~-dg~i~iwd~~---~---~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ..++.++. -|...++-+.   +   .+.+..+.+ |..-|.++.|...+..+.|||.||.+.+|
T Consensus       279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W  343 (376)
T KOG1188|consen  279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW  343 (376)
T ss_pred             ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence            45444443 4555555433   2   344555666 67778899999889999999999999999

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=1.9e-19  Score=176.18  Aligned_cols=284  Identities=35%  Similarity=0.613  Sum_probs=226.7

Q ss_pred             eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-ceecccccc-cceeEEEE-ecCCC-EEEEEeC-CCeEEEE
Q 010470          220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-LSSTLYGCL-GSVLDLAI-THDNR-SVIAASS-SNNLYVW  294 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-d~~i~iw  294 (510)
                      .+.+|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+.++. ..+..+.+ ++++. +++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            567899999999999999999999999999999998886 556666544 36777777 78887 5555444 8999999


Q ss_pred             EcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCC-EEEEec
Q 010470          295 DVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-TIFSGH  370 (510)
Q Consensus       295 d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~-~l~~~~  370 (510)
                      +... ......+..|...|.++.|+| ++..+++++. |+.+++|++..+..+..+..+ ..+.++.|+|++. .+++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            9988 778888999999999999999 6668888875 999999999988888888764 5699999999998 555558


Q ss_pred             CCCcEEEEECCCCceee-eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee-eeEeecCCCeeecCceeEEE
Q 010470          371 IDGNLRLWDIQTGKLLS-EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCI  448 (510)
Q Consensus       371 ~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~  448 (510)
                      .|+.|.+||...+.... .+..+. ... ...|+|++.++++++.|+.+++|+++.... ...+..+    ...+..+.|
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~  292 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH----SSSVLSVAF  292 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCC-cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC----CccEEEEEE
Confidence            99999999998777777 466654 333 238999999999999999999999987654 3333233    233445789


Q ss_pred             cCCCCEEEEEcCCCeEEEEeCCCcceeeccc--ccCcCEEEEEEeCCCCcEEEe-eCCCeEEEcC
Q 010470          449 SPDESYVAAGSADGSVYIWSISKADIVRTLK--EHTAPVLSCSWSGLGKPLASA-DKNGVVCVWT  510 (510)
Q Consensus       449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd  510 (510)
                      +|++..+++++.|+.+.+|+..+........  .|...+..+.|.+++..++.+ ..|+.+.+|+
T Consensus       293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             CCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence            9988888889889999999988877666665  788789999994332455555 6788888885

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=1.2e-20  Score=157.60  Aligned_cols=256  Identities=21%  Similarity=0.354  Sum_probs=193.1

Q ss_pred             CCeEEEEeCCCCc--c-eecccccccceeEEEEecCCCEEEEEeCC--------CeEEEEEcCCCC---------eeEee
Q 010470          246 DKSIKLWDTNTGS--L-SSTLYGCLGSVLDLAITHDNRSVIAASSS--------NNLYVWDVNSGR---------VRHTL  305 (510)
Q Consensus       246 dg~i~iwd~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~---------~~~~~  305 (510)
                      |+.|.+.+++.+.  . ...+..|.+.|+.++-+|-...+++...+        ..+.||.+....         ++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            6777777765432  2 34566788999999999987766655432        257899886432         23333


Q ss_pred             c-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-eeeeeec------CceeEEEEcC--CCCEEEEecCCCcE
Q 010470          306 T-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIFH------SNCNALAFSM--DGQTIFSGHIDGNL  375 (510)
Q Consensus       306 ~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~------~~i~~i~~~~--~~~~l~~~~~dg~i  375 (510)
                      . .+-+.|.|+.|.| ++..+++-. |..|.+|++..+.. +..+...      ...++-+|+|  +|+.+++.+ |+++
T Consensus       119 dteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl  195 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTL  195 (370)
T ss_pred             CHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcE
Confidence            3 4556899999999 777777766 89999999987765 3333222      2377889998  788777655 7899


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcC-CC
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISP-DE  452 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~-~~  452 (510)
                      ..||+++.+....+...+...+..+.|+|+.. +|++|+.||.|+|||.++ ..++..+..|...+-.    +.|+| ..
T Consensus       196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~----VRfn~~hd  271 (370)
T KOG1007|consen  196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA----VRFNPEHD  271 (370)
T ss_pred             EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE----EEecCccc
Confidence            99999999999888887768899999999866 678889999999999986 4566777777665544    88888 46


Q ss_pred             CEEEEEcCCCeEEEEeCCCc-----------------------------ceeecccccCcCEEEEEEeCCCCc-EEEeeC
Q 010470          453 SYVAAGSADGSVYIWSISKA-----------------------------DIVRTLKEHTAPVLSCSWSGLGKP-LASADK  502 (510)
Q Consensus       453 ~~l~~~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~  502 (510)
                      ++|.+|+.|..|.+|...+-                             ..+.++..|...|.+++||.-.++ +++-+.
T Consensus       272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY  351 (370)
T KOG1007|consen  272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY  351 (370)
T ss_pred             eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence            78899999999999965321                             123356679999999999987774 677899


Q ss_pred             CCeEEE
Q 010470          503 NGVVCV  508 (510)
Q Consensus       503 dg~i~i  508 (510)
                      ||.+.|
T Consensus       352 DGRviI  357 (370)
T KOG1007|consen  352 DGRVII  357 (370)
T ss_pred             CceEEe
Confidence            999876

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.2e-21  Score=175.48  Aligned_cols=209  Identities=19%  Similarity=0.295  Sum_probs=162.9

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEec--CCCEEEEEeCCCeEEE
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITH--DNRSVIAASSSNNLYV  293 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i  293 (510)
                      ....+.||+|.|+|+.|+.+|.+|++|+.|-.+.|||.-..+++..+. +|.+.|.++.|-|  +++.+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            456789999999999999999999999999999999998888777664 8999999999988  4678899999999999


Q ss_pred             EEcCCC----------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-Eeeeeeec----------C
Q 010470          294 WDVNSG----------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFH----------S  352 (510)
Q Consensus       294 wd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~----------~  352 (510)
                      ||+...          .....+..|...|..++..|...+.+.+++.||+|+-+|++... +......+          -
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            999842          24455678999999999999777999999999999999998632 11111111          2


Q ss_pred             ceeEEEEcC-CCCEEEEecCCCcEEEEECCCC--------c----------eeeeeccccc-----------ccEEEEEE
Q 010470          353 NCNALAFSM-DGQTIFSGHIDGNLRLWDIQTG--------K----------LLSEVAAHSL-----------AAVTSISL  402 (510)
Q Consensus       353 ~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~--------~----------~~~~~~~~~~-----------~~i~~i~~  402 (510)
                      ...|+.++| +..+|++|+.|-..++||.+..        .          ++..+...+.           ..++-+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            367899999 4567889999999999995321        1          1222221110           12567889


Q ss_pred             cCCCCEEEEEecCCcEEEEEcCC
Q 010470          403 SRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       403 ~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      +|+|.-|++.-....|++||+..
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecC
Confidence            99999888887777889888753

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=1.1e-21  Score=166.65  Aligned_cols=243  Identities=21%  Similarity=0.342  Sum_probs=186.1

Q ss_pred             ccccceEEEEEecC----CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 010470          223 AHEGGCASILFEYN----SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVN  297 (510)
Q Consensus       223 ~h~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~  297 (510)
                      .|......++|+.+    ..++|.||.-|.|+|.|+.++++...+.+|.+.|+.+.+.|+. +++++++.|..|++|++.
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            36667788888764    3478999999999999999999999999999999999999986 678899999999999999


Q ss_pred             CCCeeEee---cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-------------------------
Q 010470          298 SGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-------------------------  349 (510)
Q Consensus       298 ~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------  349 (510)
                      +..++..+   .+|.+.|.++.|++ ++.+|++++.|.++++|++...+....+.                         
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            99998887   46999999999999 88899999999999999997332111000                         


Q ss_pred             ---ec-CceeEEEEcCCCCEEEEecCCCcEEEEECC-CCce-------------eeeecccccccEEEE--EEcCCCCEE
Q 010470          350 ---FH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKL-------------LSEVAAHSLAAVTSI--SLSRSGNII  409 (510)
Q Consensus       350 ---~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-------------~~~~~~~~~~~i~~i--~~~~~~~~l  409 (510)
                         .| ..|.|+.|.  |+++++-+.++.|..|... -++.             +..+.... ..+.-+  +|+|-++.|
T Consensus       246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~-c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM-CDIWFIRFAFDPWQKML  322 (385)
T ss_pred             ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc-cceEEEEEeecHHHHHH
Confidence               00 113444443  6889998888999999872 1221             12222222 334444  556778999


Q ss_pred             EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          410 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      +.|...|.+.+||++..++..............+...+|+.||.+|+..++|++|.-||.
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            999999999999999877643333333333345666899999999999999999999985

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.88  E-value=1e-19  Score=170.58  Aligned_cols=267  Identities=16%  Similarity=0.225  Sum_probs=179.3

Q ss_pred             EEEeeCCCeEEEEeCCC-Cc--ceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcC-CCCe--eEeecCCCCce
Q 010470          240 LISGGQDKSIKLWDTNT-GS--LSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVN-SGRV--RHTLTGHTDKV  312 (510)
Q Consensus       240 l~s~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~-~~~~--~~~~~~~~~~v  312 (510)
                      +++...++.|.+|++.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|++. ++..  ..... .....
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p   82 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP   82 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence            34446789999999964 33  334443 345677899999999988775 57889999997 3432  22222 33456


Q ss_pred             EEEEEecCCCCEEEEEe-CCCcEEEEECCC-Ce---EeeeeeecCceeEEEEcCCCCEEEE-ecCCCcEEEEECCCCcee
Q 010470          313 CAVDVSKISSRHVVSAA-YDRTLKVWDLHK-GY---CVNTIIFHSNCNALAFSMDGQTIFS-GHIDGNLRLWDIQTGKLL  386 (510)
Q Consensus       313 ~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~---~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~  386 (510)
                      ..+.++| +++++++++ .++.|.+|++.+ +.   .+..+.....+.+++++|+|+++++ ...++.|.+||+.+...+
T Consensus        83 ~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l  161 (330)
T PRK11028         83 THISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL  161 (330)
T ss_pred             eEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence            7899999 677666655 489999999964 32   2333333345788999999998865 456689999999763322


Q ss_pred             e-----eecccccccEEEEEEcCCCCEEEEEec-CCcEEEEEcCC--c--eeeeEeecCCCe--eecCceeEEEcCCCCE
Q 010470          387 S-----EVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRS--L--EVCGSLRATGNR--VASNWSRSCISPDESY  454 (510)
Q Consensus       387 ~-----~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~--~--~~~~~~~~~~~~--~~~~~~~~~~s~~~~~  454 (510)
                      .     .........+..+.|+|+|+++++++. ++.|.+|++..  +  +.+..+......  .......+.++|+|++
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence            1     111122256788999999999988876 89999999973  2  233333221111  1111224789999999


Q ss_pred             EEEEcC-CCeEEEEeCCCcce----eecccccCcCEEEEEEeCCCCcEEEeeC-CCeEEEcC
Q 010470          455 VAAGSA-DGSVYIWSISKADI----VRTLKEHTAPVLSCSWSGLGKPLASADK-NGVVCVWT  510 (510)
Q Consensus       455 l~~~~~-dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd  510 (510)
                      ++++.. ++.|.+|++.....    +...... .....+.|+|+|++|++++. ++.|.+|+
T Consensus       242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             EEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            998854 68999999865432    2222211 24568899999999887765 88999983

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=9.2e-21  Score=164.79  Aligned_cols=208  Identities=24%  Similarity=0.328  Sum_probs=169.8

Q ss_pred             cccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCC-------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCc
Q 010470          262 TLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSG-------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT  333 (510)
Q Consensus       262 ~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~  333 (510)
                      .+.+|.++|..++|+|.+ ..|++||.|.+|.||.+..+       +++..+.+|...|.-+.|+|.-.+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            456999999999999965 56778889999999998754       3567788999999999999988999999999999


Q ss_pred             EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470          334 LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG  413 (510)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  413 (510)
                      |.+||+.+|..+-++.++.-|.+++|+.||..|++.+.|..|+|||.++++.+..-..|.......+.|-.+|.++-+|.
T Consensus       156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf  235 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF  235 (472)
T ss_pred             EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence            99999999999888886677999999999999999999999999999999999988777766777788888898554443


Q ss_pred             ---cCCcEEEEEcCCceee---eEeecCCCeeecCceeEEEcCCCCEEEE-EcCCCeEEEEeCCCcce
Q 010470          414 ---RDNLHNLFDIRSLEVC---GSLRATGNRVASNWSRSCISPDESYVAA-GSADGSVYIWSISKADI  474 (510)
Q Consensus       414 ---~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~  474 (510)
                         .+..+-+||..+....   ..+....+...     .-+.+|...|+. |-.|+.|+.|.+.+..+
T Consensus       236 sr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~-----PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  236 SRMSERQIALWDPNNLEEPIALQELDTSNGVLL-----PFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             ccccccceeccCcccccCcceeEEeccCCceEE-----eeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence               4568999998764432   22323322222     457888887664 55699999999887653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=7.3e-19  Score=172.09  Aligned_cols=287  Identities=33%  Similarity=0.578  Sum_probs=228.1

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeC-CCeEEEEeCCCCcceecccccccceeEEEEecCCC-EEEEEeCCCeEE
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLY  292 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~  292 (510)
                      ......+.+|...|.+++|+|++..+++++. |+.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|.
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            4567788999999999999999999999886 99999999999888888889999999999999998 555558999999


Q ss_pred             EEEcCCCCeeE-eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-eeeeee-cCceeEEEEcCCCCEEEEe
Q 010470          293 VWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTIIF-HSNCNALAFSMDGQTIFSG  369 (510)
Q Consensus       293 iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~i~~i~~~~~~~~l~~~  369 (510)
                      +||...+.... .+.+|...+ ...|+| ++..+++++.|+.+++||+..... ...+.. ...+.++.|.|++..++++
T Consensus       225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  302 (466)
T COG2319         225 LWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG  302 (466)
T ss_pred             EEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence            99988788777 688888875 447888 557888999999999999986664 444423 3568999999988888888


Q ss_pred             cCCCcEEEEECCCCceeeeec--ccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeE
Q 010470          370 HIDGNLRLWDIQTGKLLSEVA--AHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS  446 (510)
Q Consensus       370 ~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  446 (510)
                      +.|+.+.+||..+........  .+. ..+..+.|.+++..++.+ ..|+.+.+|+...............     ...+
T Consensus       303 ~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~  376 (466)
T COG2319         303 SSDGTVRLWDLETGKLLSSLTLKGHE-GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-----VLSV  376 (466)
T ss_pred             eCCCcEEEEEcCCCceEEEeeecccC-CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-----EEEE
Confidence            888899999998887666665  443 468899984333555555 6788999999987762222222221     3347


Q ss_pred             EEcCCCCEEEE-EcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          447 CISPDESYVAA-GSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       447 ~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+++ ...+.. +..++.+.+|+............+...+....+++++..+++++.++.+.+|+
T Consensus       377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (466)
T COG2319         377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD  440 (466)
T ss_pred             EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence            7777 544444 68899999999998887776665437889999999999999999999999985

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=4.3e-19  Score=164.40  Aligned_cols=226  Identities=15%  Similarity=0.276  Sum_probs=169.8

Q ss_pred             CCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec----------c
Q 010470          194 VDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST----------L  263 (510)
Q Consensus       194 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------~  263 (510)
                      +||.-.+-..+...+..+........+++||.+.|.|++|+.||+.+++|+.|..|.+|+..-.-.++.          +
T Consensus        22 PDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsF  101 (1081)
T KOG1538|consen   22 PDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSF  101 (1081)
T ss_pred             CCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeec
Confidence            344333333333333344445678899999999999999999999999999999999998642111100          0


Q ss_pred             ---------------------------cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee---cCCCCceE
Q 010470          264 ---------------------------YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL---TGHTDKVC  313 (510)
Q Consensus       264 ---------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~  313 (510)
                                                 ......|.+++|..||.+++.|-.+|+|.+-+ .+++....+   .+.+.+|+
T Consensus       102 NP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiw  180 (1081)
T KOG1538|consen  102 NPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIW  180 (1081)
T ss_pred             CchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCce
Confidence                                       01123567778888999999999999999986 445443333   35778999


Q ss_pred             EEEEecCC----CCEEEEEeCCCcEEEEECCCCeEee-eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 010470          314 AVDVSKIS----SRHVVSAAYDRTLKVWDLHKGYCVN-TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE  388 (510)
Q Consensus       314 ~i~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  388 (510)
                      +++|+|..    ...+++.....++.+|.+. |+.+. .-...-.+.|+.+.|+|.+++.|+.|+.+.+|. +.|-.+.+
T Consensus       181 si~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGT  258 (1081)
T KOG1538|consen  181 SICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGT  258 (1081)
T ss_pred             EEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEee
Confidence            99999953    3567788888888888884 55444 333445688999999999999999999999997 67777777


Q ss_pred             ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          389 VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       389 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      +.... ..|..+...|++++++.|+.||+|..|++
T Consensus       259 vg~~D-~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  259 VGEQD-SWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ccccc-eeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            76654 89999999999999999999999987765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=2.4e-20  Score=158.13  Aligned_cols=236  Identities=18%  Similarity=0.276  Sum_probs=183.1

Q ss_pred             eeEEEEecCCCEEEEEeCCCeEEEEEcCCCC------------eeEeec-CCCCceEEEEEec------CCCCEEEEEeC
Q 010470          270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGR------------VRHTLT-GHTDKVCAVDVSK------ISSRHVVSAAY  330 (510)
Q Consensus       270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~-~~~~~v~~i~~~~------~~~~~l~s~~~  330 (510)
                      ...+.|+|||..|++.+.|..+.+|++...-            ....+. .....|...+|.+      .+.+++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            3568999999999999999999999985311            011111 1335577777752      16788999999


Q ss_pred             CCcEEEEECCCCeEeeeeeec------CceeEEEEcCCCCEEEEecCCCcEEEEEC-CCCceeeeec------ccccccE
Q 010470          331 DRTLKVWDLHKGYCVNTIIFH------SNCNALAFSMDGQTIFSGHIDGNLRLWDI-QTGKLLSEVA------AHSLAAV  397 (510)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~------~~~~~~i  397 (510)
                      +.-|++||.-+|+....+..-      ....+++|+|||..|++|.. ..|++||+ |.|.......      ....+.+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            999999999999887776543      23679999999999998875 68999999 5554322111      1123678


Q ss_pred             EEEEEcCCCC-EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCCC-cce
Q 010470          398 TSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGSVYIWSISK-ADI  474 (510)
Q Consensus       398 ~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~-~~~  474 (510)
                      .+++|+|-.. .+++++....+-||.-....++..+.++.+.+..    ++|.++|+.|++|.. |-.|.+||++. +.+
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh----L~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH----LQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee----EEeccCcCeecccccCCCeEEEEeehhccch
Confidence            9999999655 8999999999999999999999888888777665    999999999999886 67899999986 567


Q ss_pred             eecccccCc-CEEE--EEEeCCCCcEEEeeCCCeEEEcC
Q 010470          475 VRTLKEHTA-PVLS--CSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       475 ~~~~~~~~~-~v~~--~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +..+..|.. .=..  +...|+|++|++|+.||.|++||
T Consensus       287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd  325 (406)
T KOG2919|consen  287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD  325 (406)
T ss_pred             hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence            788877765 2233  45568999999999999999997

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.5e-21  Score=175.93  Aligned_cols=247  Identities=21%  Similarity=0.281  Sum_probs=191.1

Q ss_pred             cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC--------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCc
Q 010470          262 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS--------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT  333 (510)
Q Consensus       262 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~  333 (510)
                      ++..|...|..+.|.|....|++++.||.+.+|++..        -+++.+|.+|.++|.|+++.+ ++..+++|+.||+
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGT  367 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCce
Confidence            4567888999999999999999999999999999932        247889999999999999988 8999999999999


Q ss_pred             EEEEECCCC------e----EeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-cccEEEEE
Q 010470          334 LKVWDLHKG------Y----CVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSIS  401 (510)
Q Consensus       334 i~iwd~~~~------~----~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~  401 (510)
                      |+.|++...      .    ....+.++. .+..+++++....|++++.||+++.|+.....+ ..+.... .+...++.
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd  446 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD  446 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence            999966421      1    223334443 477999999999999999999999999876655 3333221 14566666


Q ss_pred             EcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeee---cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470          402 LSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA---SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT  477 (510)
Q Consensus       402 ~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  477 (510)
                      +-... .+.++...-+.-.+++......+..+.....+..   ..+..+...|.+.+.+++..|+.|+++|..+++++..
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s  526 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS  526 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence            65443 3344444444444555554444444443322222   4456678899999999999999999999999999999


Q ss_pred             ccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          478 LKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       478 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ...|...++++++.|+|.+|++++.||.+.+|.
T Consensus       527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             eeeccceecceeecCCCceEEeecCCceeehhh
Confidence            999999999999999999999999999999994

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=7.2e-20  Score=177.81  Aligned_cols=284  Identities=21%  Similarity=0.339  Sum_probs=206.4

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc---ccceeEEEEec--CCCEEEEEeCCCeEEEEEcC
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC---LGSVLDLAITH--DNRSVIAASSSNNLYVWDVN  297 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~  297 (510)
                      +..++...+.|+|-...++++...-.|+|||.+.++....+..+   ...|+.+.+-.  |..++++|+.||.|+||+--
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            33345677889998889999988889999999999887776643   45788888854  45689999999999999753


Q ss_pred             CC-----CeeEeecC-------CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--eeEEEEcC-C
Q 010470          298 SG-----RVRHTLTG-------HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSM-D  362 (510)
Q Consensus       298 ~~-----~~~~~~~~-------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~-~  362 (510)
                      ..     +.+..+.+       ..+.-.-+.|.. ...+|+++|.-..|+|||.....+...+...+.  ++++.-+- .
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence            22     22322221       112224466766 445555555588999999999888888876654  56655443 5


Q ss_pred             CCEEEEecCCCcEEEEECCCCc---eeeeeccccccc--EEEEEEcCCCCE-EEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470          363 GQTIFSGHIDGNLRLWDIQTGK---LLSEVAAHSLAA--VTSISLSRSGNI-ILTSGRDNLHNLFDIRSLEVCGSLRATG  436 (510)
Q Consensus       363 ~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~--i~~i~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~  436 (510)
                      |+.|++|..||.|++||.+...   .+.....|. ..  |..+.+.+.|-- |++|+.+|.|++||++.......+....
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~-~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHN-DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccC-CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            7999999999999999998654   344555554 44  889999987765 9999999999999999752222222111


Q ss_pred             Cee-ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-------cCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          437 NRV-ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-------HTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       437 ~~~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      ..- .+..+++.++++...+|+|+. +.|.||++. |+.+..++.       ..+++.+++|+|..-.|++|+.|..|.|
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence            111 113566889999999999998 899999975 444444332       3456899999999989999999999999


Q ss_pred             cC
Q 010470          509 WT  510 (510)
Q Consensus       509 wd  510 (510)
                      |.
T Consensus      1378 Ys 1379 (1387)
T KOG1517|consen 1378 YS 1379 (1387)
T ss_pred             ee
Confidence            84

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.85  E-value=2.3e-19  Score=177.02  Aligned_cols=295  Identities=14%  Similarity=0.186  Sum_probs=211.5

Q ss_pred             cceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCC-------cceecccccccceeEEEEecCCCEEEEEeC
Q 010470          216 TCKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTG-------SLSSTLYGCLGSVLDLAITHDNRSVIAASS  287 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  287 (510)
                      ..+..+..|.+.|..++.++. +.+|+|||.||+|++|+...-       +...++....+.+.++.+.+.+..+++++.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            355667788999999988765 599999999999999998531       122333445778999999999999999999


Q ss_pred             CCeEEEEEcCCC--C-----eeEeecCC--CCceEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEeeeeee---cCce
Q 010470          288 SNNLYVWDVNSG--R-----VRHTLTGH--TDKVCAVDVSKISSR-HVVSAAYDRTLKVWDLHKGYCVNTIIF---HSNC  354 (510)
Q Consensus       288 d~~i~iwd~~~~--~-----~~~~~~~~--~~~v~~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~i  354 (510)
                      ||.|.+.+++..  .     .......+  ...|..-++...... .++.+...+.|..||++..........   ++-+
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence            999999998752  1     11112222  222333344333334 788888889999999987766655543   4569


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCC---CEEEEEe--cCCcEEEEEcCCceee
Q 010470          355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG---NIILTSG--RDNLHNLFDIRSLEVC  429 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~--~d~~i~i~d~~~~~~~  429 (510)
                      ++++.+|.++++++|+..|.+.+||+|-+.++..+..+...++..+..+|-.   ...++++  ..+.|.+|++.++...
T Consensus      1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred             eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence            9999999999999999999999999999999998887776888888877643   3444443  5678999999988766


Q ss_pred             eEeecCCC-e--------------eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee-------------------
Q 010470          430 GSLRATGN-R--------------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV-------------------  475 (510)
Q Consensus       430 ~~~~~~~~-~--------------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------  475 (510)
                      ..+..... +              ........++...+.++.+|+.|+.|+.||.......                   
T Consensus      1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred             EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence            66554411 1              1111112334445668889999999999997532110                   


Q ss_pred             ----------e-------------------cc--------cccCcCEEEEEEeCCC-CcEEEeeCCCeEEEcC
Q 010470          476 ----------R-------------------TL--------KEHTAPVLSCSWSGLG-KPLASADKNGVVCVWT  510 (510)
Q Consensus       476 ----------~-------------------~~--------~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd  510 (510)
                                .                   .+        ..|..+|+++++.... .+|++++.||.|+||-
T Consensus      1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                      0                   00        1377788888876544 4889999999999994

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.85  E-value=4.4e-18  Score=147.32  Aligned_cols=236  Identities=17%  Similarity=0.204  Sum_probs=183.5

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC--CeEEEEEcCCCCee
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS--NNLYVWDVNSGRVR  302 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~  302 (510)
                      ...+..+.|+.+...|..|+.|| .++|+.+..............|..+-|+  ..+++..+.+  ..+++++...+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence            34577778999999999999988 6788776554433333334455556665  4556665543  35899999888888


Q ss_pred             EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-C---ceeEEEEcCCCCEEEE--ecCCCcEE
Q 010470          303 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-S---NCNALAFSMDGQTIFS--GHIDGNLR  376 (510)
Q Consensus       303 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~---~i~~i~~~~~~~~l~~--~~~dg~i~  376 (510)
                      +.+. ...+|.++.++.   +.++++-.+ .|+|||+++.+.+.++... .   .+.++.+++.+.+++.  ....|.|.
T Consensus        82 Ce~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             EEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            7776 567899998864   555555543 4999999999998888654 2   2555556666678884  34578999


Q ss_pred             EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCc-EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470          377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL-HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  455 (510)
                      +||..+-+++..+..|. +++.+++|+++|.+|++++..|+ |+||.+.+++.+..|+....  ...+.+++|+|++++|
T Consensus       157 l~d~~nl~~v~~I~aH~-~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHK-GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPDSQFL  233 (391)
T ss_pred             EEEcccceeeeEEEecC-CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCCCCeE
Confidence            99999999999999887 99999999999999999999985 79999999999999876555  4456779999999999


Q ss_pred             EEEcCCCeEEEEeCCC
Q 010470          456 AAGSADGSVYIWSISK  471 (510)
Q Consensus       456 ~~~~~dg~i~iwd~~~  471 (510)
                      ++.+..++|+||.+..
T Consensus       234 ~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEK  249 (391)
T ss_pred             EEecCCCeEEEEEecc
Confidence            9999999999998753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=1e-19  Score=158.40  Aligned_cols=206  Identities=19%  Similarity=0.298  Sum_probs=166.6

Q ss_pred             eccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCC-------cceecccccccceeEEEEecCC-CEEEEEeCCCe
Q 010470          220 KINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTG-------SLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNN  290 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~  290 (510)
                      .+.||+++|..++|+| +...||+||.|.+|.||.+..+       .++..+.+|...|--+.|+|.. +.|++++.|+.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4679999999999999 4567899999999999998654       3356678999999999999964 57889999999


Q ss_pred             EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEE
Q 010470          291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFS  368 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~  368 (510)
                      |.+||+.+|+.+.++. |.+.|+++.|+. ++.++++.+.|..|+|||.++++.+..-..|..  ...+.|..+|..+-+
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence            9999999999888888 999999999998 899999999999999999999999888755533  455667778885555


Q ss_pred             ec---CCCcEEEEECCCCce-eeeecccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCce
Q 010470          369 GH---IDGNLRLWDIQTGKL-LSEVAAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLE  427 (510)
Q Consensus       369 ~~---~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~  427 (510)
                      |.   .+..+.+||..+... +..........|.---|+++.+.++.+ -.|+.|+.|.+..-.
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            53   467899999876432 222222333677777889998877655 478999999987644

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.4e-19  Score=144.14  Aligned_cols=232  Identities=15%  Similarity=0.237  Sum_probs=178.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCC---------C-CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNS---------G-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      .|..-+|+|.+++|++|+.+|.|.++.+.+         + ..+....+|.++++.++|+   ..++++|+ ||.|+-|.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEee
Confidence            455668999999999999999999998863         2 2455668999999999996   46777877 69999997


Q ss_pred             CCCCeE------eeeee--------ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC
Q 010470          339 LHKGYC------VNTII--------FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR  404 (510)
Q Consensus       339 ~~~~~~------~~~~~--------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~  404 (510)
                      .+....      +....        .-..|+++.+.|..+.++.++.|+.++.||+++|+..+.+.+|. ..+.++.--.
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt-DYvH~vv~R~  166 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT-DYVHSVVGRN  166 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc-ceeeeeeecc
Confidence            653211      11111        11348999999988888877799999999999999999999998 8999998866


Q ss_pred             CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec--Ccee--EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc
Q 010470          405 SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS--NWSR--SCISPDESYVAAGSADGSVYIWSISKADIVRTLKE  480 (510)
Q Consensus       405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~--~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  480 (510)
                      ....+++|+.||++++||+++.+.+..+....++...  .+..  .++.-+..++++|+.- .+.+|++.+.++...++ 
T Consensus       167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-~lslwhLrsse~t~vfp-  244 (325)
T KOG0649|consen  167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-KLSLWHLRSSESTCVFP-  244 (325)
T ss_pred             cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-ceeEEeccCCCceEEEe-
Confidence            6778999999999999999999998888655443322  1222  5667788899988855 59999999998887776 


Q ss_pred             cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          481 HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       481 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      -..+|..+.|..|  .++++|..+.|.-|
T Consensus       245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  245 IPARVHLVDFVDD--CVLIGGEGNHVQSY  271 (325)
T ss_pred             cccceeEeeeecc--eEEEeccccceeee
Confidence            3456788888654  56677655555544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4.7e-18  Score=138.71  Aligned_cols=231  Identities=20%  Similarity=0.251  Sum_probs=173.1

Q ss_pred             chHHhhhhcCCceEEecccccccccccCCCcc-ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc----
Q 010470          185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPST-CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL----  259 (510)
Q Consensus       185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----  259 (510)
                      ....++.+..+|.+.+.............|.+ .+..+++|.++|+.++|.  ..+|++|+ ||.|+-|.......    
T Consensus        21 ~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~   97 (325)
T KOG0649|consen   21 SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLAT   97 (325)
T ss_pred             cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccc
Confidence            33446677788888776644433333333333 445568999999999998  34777777 59999998753221    


Q ss_pred             --eec--cccc-----ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC
Q 010470          260 --SST--LYGC-----LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY  330 (510)
Q Consensus       260 --~~~--~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~  330 (510)
                        +..  ..-|     -..|+++...|..+.++.++.|+.++-||+++|+....+.+|++.|.++.--. ....+++|+.
T Consensus        98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~E  176 (325)
T KOG0649|consen   98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAE  176 (325)
T ss_pred             hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCC
Confidence              111  1112     24688999999988888888999999999999999999999999999998754 5678999999


Q ss_pred             CCcEEEEECCCCeEeeeeeecCce---------eEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEE
Q 010470          331 DRTLKVWDLHKGYCVNTIIFHSNC---------NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS  401 (510)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~~i---------~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~  401 (510)
                      ||++++||.++++++..+......         .-.++.-+..++++|+. ..+.+|.+++.++...+..+  .++..+.
T Consensus       177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfpip--a~v~~v~  253 (325)
T KOG0649|consen  177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP--ARVHLVD  253 (325)
T ss_pred             CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEecc--cceeEee
Confidence            999999999999999887543221         11333346778887764 57999999999998888877  6888888


Q ss_pred             EcCCCCEEEEEecCCcEEEEEcC
Q 010470          402 LSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       402 ~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      |.  .+.+++++..+.|.-|.+.
T Consensus       254 F~--~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  254 FV--DDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ee--cceEEEeccccceeeeeec
Confidence            85  4567888888888888775

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.3e-18  Score=166.60  Aligned_cols=281  Identities=16%  Similarity=0.241  Sum_probs=205.7

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC--C--cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNT--G--SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      .|.-.++|.++||+++++|+|..||.|.+|.--.  +  .....++-|...|.+++|+++|.+|++|+..|.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4666799999999999999999999999996432  1  22455677999999999999999999999999999999999


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec------------CceeEEEEcCCCCEE
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH------------SNCNALAFSMDGQTI  366 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~i~~i~~~~~~~~l  366 (510)
                      ++ .+-++.-.++|..+.++| ++.+......|+.|.+....+.....++.+.            +-.+.++++|.-+.+
T Consensus       283 ~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~  360 (792)
T KOG1963|consen  283 GK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL  360 (792)
T ss_pred             CC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence            88 555666789999999999 7777777778999999987654433333221            115788999977778


Q ss_pred             EEecCCCcEEEEECCCCceeeeeccc----------ccccEEEEEEcCCCCEEEEEe--------cCC--cEEEEEcCCc
Q 010470          367 FSGHIDGNLRLWDIQTGKLLSEVAAH----------SLAAVTSISLSRSGNIILTSG--------RDN--LHNLFDIRSL  426 (510)
Q Consensus       367 ~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~i~~i~~~~~~~~l~~~~--------~d~--~i~i~d~~~~  426 (510)
                      +..+..|.|.+||+-+...+..+...          ..-.++.+..+..|.++++.-        .||  .+++|-....
T Consensus       361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~  440 (792)
T KOG1963|consen  361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN  440 (792)
T ss_pred             eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence            88888999999999887766554311          113577788888899998864        233  5677865533


Q ss_pred             ee----eeEee-cCCCeeecCceeEEE-cC-CCCEEEEEcCCCeEEEEeCCCcc----------eeecccccCcCEEEEE
Q 010470          427 EV----CGSLR-ATGNRVASNWSRSCI-SP-DESYVAAGSADGSVYIWSISKAD----------IVRTLKEHTAPVLSCS  489 (510)
Q Consensus       427 ~~----~~~~~-~~~~~~~~~~~~~~~-s~-~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~  489 (510)
                      ..    ...+. .|......    .++ ++ .....++++.||.++||-+...+          +...-..|..++++++
T Consensus       441 ~kt~~L~T~I~~PH~~~~va----t~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~  516 (792)
T KOG1963|consen  441 SKTFILNTKINNPHGNAFVA----TIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC  516 (792)
T ss_pred             cceeEEEEEEecCCCceeEE----EEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence            22    22222 22222221    233 33 33378999999999999884322          1111123788999999


Q ss_pred             EeCCCCcEEEeeCCCeEEEcC
Q 010470          490 WSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       490 ~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |+.|| .+++++.|+.|.+||
T Consensus       517 fs~dG-slla~s~~~~Itiwd  536 (792)
T KOG1963|consen  517 FSQDG-SLLAVSFDDTITIWD  536 (792)
T ss_pred             hcCCC-cEEEEecCCEEEEec
Confidence            99999 566777888999997

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.84  E-value=6.4e-19  Score=149.51  Aligned_cols=204  Identities=17%  Similarity=0.197  Sum_probs=166.1

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc---ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS---LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      .---.+|+|.+|++|+..+|++.....|.||......   ...++..|...|++++|+|..+.|++|+.|..-++|....
T Consensus         7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            3345689999999999999999999999999987655   5778889999999999999999999999999999999843


Q ss_pred             -CC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe-----eeeeecCceeEEEEcCCCCEEEEec
Q 010470          299 -GR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV-----NTIIFHSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       299 -~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~i~~i~~~~~~~~l~~~~  370 (510)
                       ++  +.-.+..++...+++.|+| ..+.|++|+....|.||-++...--     -.....+.|+++.|+|++-.+++|+
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence             33  4555667899999999999 8899999999999999987643221     1112335699999999999999999


Q ss_pred             CCCcEEEEECC-----C-------------CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce
Q 010470          371 IDGNLRLWDIQ-----T-------------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE  427 (510)
Q Consensus       371 ~dg~i~i~d~~-----~-------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~  427 (510)
                      .|+..++|..-     .             |.....+. ...+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            99999999641     0             12222332 233789999999999999999999999999987653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=7.8e-19  Score=167.97  Aligned_cols=260  Identities=18%  Similarity=0.202  Sum_probs=189.2

Q ss_pred             CCeEEEEeCCCCcceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCe--eEe----ecCCCCceEEEEEe
Q 010470          246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRV--RHT----LTGHTDKVCAVDVS  318 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~--~~~----~~~~~~~v~~i~~~  318 (510)
                      ++.+.||++...............|+++.|+|... +++.|+.+|.|.+||+..+..  ...    ...|..+++.+.|.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            34799999987644444445678999999999655 556666899999999987654  222    24688999999998


Q ss_pred             cCC-CCEEEEEeCCCcEEEEECCCCeE------eee-------eeecCceeEEEEcC-CCCEEEEecCCCcEEEEECCC-
Q 010470          319 KIS-SRHVVSAAYDRTLKVWDLHKGYC------VNT-------IIFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQT-  382 (510)
Q Consensus       319 ~~~-~~~l~s~~~dg~i~iwd~~~~~~------~~~-------~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~-  382 (510)
                      ... +.-|++++.||.|..|+++.-..      ...       ......++++.|.+ +...+++|+..|.|+.-+-.. 
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            731 24489999999999998864322      111       11123478999988 566788999999998743222 


Q ss_pred             --Cc-----eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC-CceeeeEeecCCCeeecCceeEEEcCCC-C
Q 010470          383 --GK-----LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR-SLEVCGSLRATGNRVASNWSRSCISPDE-S  453 (510)
Q Consensus       383 --~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~  453 (510)
                        +.     ....+..|. ++|+++.++|-+..++.++.|.+++||... ...++..+..+...+    ..++|||.- .
T Consensus       381 ~~~~~~~~~~~~~~~~h~-g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v----~~vaWSptrpa  455 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHI-GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYV----TDVAWSPTRPA  455 (555)
T ss_pred             cccccccccccccccccC-cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcccee----eeeEEcCcCce
Confidence              11     122333444 899999999988777666669999999987 555555555544443    448999965 5


Q ss_pred             EEEEEcCCCeEEEEeCCC--cceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          454 YVAAGSADGSVYIWSISK--ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       454 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .|+++..||.|.+||+..  ..++.+.+.+....+.+.|++.|+.|++|+..|.+.+|+
T Consensus       456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            678888899999999865  355666655666778889999999999999999999874

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.84  E-value=1.7e-18  Score=147.40  Aligned_cols=276  Identities=13%  Similarity=0.223  Sum_probs=202.9

Q ss_pred             EEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCC
Q 010470          230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGH  308 (510)
Q Consensus       230 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~  308 (510)
                      -++|||+|+++|+++.- .+.|-|.++.+....+. .-..|.-+.|..|.-+++.+. .++.|.+|++...+-..++...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            36799999999999865 88888988877654433 356777899998888777664 6789999999999888899888


Q ss_pred             CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC----------------
Q 010470          309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID----------------  372 (510)
Q Consensus       309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----------------  372 (510)
                      ..++.+++|+|++..++.+...+-.|.+|.+.+.+....-.....+..++|+|||++.+..+..                
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            9999999999955577778888999999999887766555555667889999999987665432                


Q ss_pred             --------------------CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEe
Q 010470          373 --------------------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL  432 (510)
Q Consensus       373 --------------------g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  432 (510)
                                          ..+.+||.--.-.+..  -+..-++..+.|+|.++++++|+.|+.+++.+--+.+....+
T Consensus       171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a--Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef  248 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA--YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF  248 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEEEecchhhheeee--eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence                                1233444211111111  122257889999999999999999998887553322221110


Q ss_pred             ------------------------------------------------------------ecCC--CeeecCceeEEEcC
Q 010470          433 ------------------------------------------------------------RATG--NRVASNWSRSCISP  450 (510)
Q Consensus       433 ------------------------------------------------------------~~~~--~~~~~~~~~~~~s~  450 (510)
                                                                                  +...  ......+..++|++
T Consensus       249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~  328 (447)
T KOG4497|consen  249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC  328 (447)
T ss_pred             ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence                                                                        0000  00122455689999


Q ss_pred             CCCEEEEEcCC--CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          451 DESYVAAGSAD--GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       451 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |..|+++-.+.  +.+.+||+...+....+. ...+|....|+|....|+.+.....+++|.
T Consensus       329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence            99999987653  679999999887766654 456899999999999999888888899984

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.5e-19  Score=153.25  Aligned_cols=269  Identities=16%  Similarity=0.250  Sum_probs=187.5

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec--CCCEEEEeeCCCeEEEEeCCCCcceec--cc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY--NSARLISGGQDKSIKLWDTNTGSLSST--LY  264 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~  264 (510)
                      ++.+-..|.+++++.+.         .+....|++|.+.++.+.|..  .+..+.+|+.||+|++||+.+......  ..
T Consensus        43 vav~lSngsv~lyd~~t---------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   43 VAVSLSNGSVRLYDKGT---------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             EEEEecCCeEEEEeccc---------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence            44555667777766543         446778899999999999987  467899999999999999987655433  33


Q ss_pred             ccc-cceeEEEEecCCCEEEEEe----CCCeEEEEEcCCCCe-eEee-cCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470          265 GCL-GSVLDLAITHDNRSVIAAS----SSNNLYVWDVNSGRV-RHTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW  337 (510)
Q Consensus       265 ~~~-~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw  337 (510)
                      .+. .+..+++....++.+++|.    .+-.|.+||++..+. +..+ ..|.+.|+++.|+|.+.++|++||.||.|.+|
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf  193 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF  193 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence            444 4566666666777777775    466899999987764 4443 57999999999999999999999999999999


Q ss_pred             ECCCC----eEeeeeeecCceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeeccccc-----------ccEEEEE
Q 010470          338 DLHKG----YCVNTIIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-----------AAVTSIS  401 (510)
Q Consensus       338 d~~~~----~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~i~~i~  401 (510)
                      |+...    ....++...+.|.++.|..++ +.|.+-+..+...+|++..+.....+..+..           ..+-...
T Consensus       194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~  273 (376)
T KOG1188|consen  194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH  273 (376)
T ss_pred             ecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc
Confidence            99754    234555666779999998776 3577778888999999998876555443310           1111111


Q ss_pred             EcCCCCEEEEEec-CCcEEEEEcC---C---ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          402 LSRSGNIILTSGR-DNLHNLFDIR---S---LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       402 ~~~~~~~l~~~~~-d~~i~i~d~~---~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      ...++..++.++. -|...++-+.   +   ......+.++...+   +..+.|...+.++++|+.||.+.+|..
T Consensus       274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei---VR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI---VRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH---HHHHhhhcccceeeccCCCceEEEEec
Confidence            1223444444444 5555555443   2   22233333322222   233667788999999999999999985

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=5.7e-19  Score=159.59  Aligned_cols=262  Identities=16%  Similarity=0.233  Sum_probs=190.8

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccce-eEEEEe-------cCCCEEEEEeCCCeEEEE
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSV-LDLAIT-------HDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~-------~~~~~l~~~~~d~~i~iw  294 (510)
                      -|...|.|+.|+.+...+.+++++..+.-||+.+... ..+.-....+ +.+..-       .....++.+++||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            4666778999998877777666555455555543221 1111111111 111111       123578899999999998


Q ss_pred             EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCCCEEEEecCCC
Q 010470          295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGHIDG  373 (510)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg  373 (510)
                      + ..++....+..|.+.+.+-.|+| ++.-+++++.||.|++|.- +|....++. ...+|.|++|.|+.+.++.+.. |
T Consensus        91 ~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~  166 (737)
T KOG1524|consen   91 N-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-G  166 (737)
T ss_pred             c-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence            7 66888888999999999999999 8899999999999999985 565544443 3466999999998877665543 5


Q ss_pred             cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      .+.|=.+.....+..+..|. +-|.++.|+|..+++++|+.|-..+|||... ..+..-..+..++    ++++|.|+ .
T Consensus       167 h~~IKpL~~n~k~i~WkAHD-GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~I----TSva~npd-~  239 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRAHD-GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAI----TSVAFNPE-K  239 (737)
T ss_pred             eEEEeecccccceeEEeccC-cEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccce----eeeeeccc-c
Confidence            78887777777777888887 8999999999999999999999999999753 4444444555554    44999999 6


Q ss_pred             EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          454 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       454 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      .++.||.+ ++++=           +...++|..++||+||..++.|+..|.+.+
T Consensus       240 ~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  240 DYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence            66666643 34411           124578999999999999999999998754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=1.7e-18  Score=165.73  Aligned_cols=242  Identities=16%  Similarity=0.178  Sum_probs=179.7

Q ss_pred             ccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcc--ee----cccccccceeEEEEecCCCE--EEEEeCCCeEEEEE
Q 010470          225 EGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSL--SS----TLYGCLGSVLDLAITHDNRS--VIAASSSNNLYVWD  295 (510)
Q Consensus       225 ~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~iwd  295 (510)
                      ...|+|+.|+| +..+++.|+.+|.|.+||+..+..  ..    ....|..+++.+.|..+-.-  +++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            45799999999 667889999999999999976654  22    23478899999999765544  99999999999998


Q ss_pred             cCCCCe-e-----Eeec------CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE--------eeee-eecCce
Q 010470          296 VNSGRV-R-----HTLT------GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--------VNTI-IFHSNC  354 (510)
Q Consensus       296 ~~~~~~-~-----~~~~------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~-~~~~~i  354 (510)
                      ++.-.. .     ....      .....+++++|.+.+.+.|+.|+..|.|..-+-...+.        ...+ .+.+.+
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            764321 1     1111      12346889999998999999999999998844332211        1122 234669


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEECC-CCceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCCc--eeee
Q 010470          355 NALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSL--EVCG  430 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~--~~~~  430 (510)
                      +++.++|-+..++..+.|.++++|... ...++..+..+. ..+++++|||... .|+++..+|.+.+||+...  .++.
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~-~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~  480 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP-DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL  480 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc-ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence            999999977766655559999999987 666776666665 6799999999765 6777778999999999743  3333


Q ss_pred             EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      +....    ......+.|+++|+.|++|...|++++|++..
T Consensus       481 s~~~~----~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  481 SQKVC----SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccccc----ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            33333    22234477899999999999999999999863

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=1.4e-19  Score=160.81  Aligned_cols=268  Identities=22%  Similarity=0.310  Sum_probs=210.3

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      ...+...+.|+.+|.+|+.|+.-|.|-.+|+.++++...+.. ...|.++.|..+..+++++- .+.++||| ..|..++
T Consensus       128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElH  204 (545)
T KOG1272|consen  128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELH  204 (545)
T ss_pred             cccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEe
Confidence            344667899999999999999999999999999998777653 56788899988777666654 56899999 6687788


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCC
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQT  382 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~  382 (510)
                      .+..| ..|..+.|.| ...+|++++..|.++.-|+.+|+.+..+... +.+..++-+|-+..+-+|..+|+|.+|...+
T Consensus       205 Clk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  205 CLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             ehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            77755 6788999999 7778889999999999999999998888665 5588899999999999999999999999999


Q ss_pred             CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC
Q 010470          383 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG  462 (510)
Q Consensus       383 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg  462 (510)
                      ..++..+..|. ++|.+|++.++|+|+++++.|..++|||+++...+.++..+...     ..+++|..|- ||.+- ..
T Consensus       283 kePLvKiLcH~-g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a-----~~ls~Sqkgl-LA~~~-G~  354 (545)
T KOG1272|consen  283 KEPLVKILCHR-GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA-----SNLSLSQKGL-LALSY-GD  354 (545)
T ss_pred             cchHHHHHhcC-CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCc-----cccccccccc-eeeec-CC
Confidence            99999998888 99999999999999999999999999999998876666552221     2266766553 34333 34


Q ss_pred             eEEEEe-CCCcc--eeecccc--cCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          463 SVYIWS-ISKAD--IVRTLKE--HTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       463 ~i~iwd-~~~~~--~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                      .|.||. ...+.  ....+-.  ..++|.++.|.|-...|-.|-..|
T Consensus       355 ~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  355 HVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             eeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            599995 22221  1111111  345899999998766555544433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=1.7e-18  Score=167.22  Aligned_cols=232  Identities=18%  Similarity=0.151  Sum_probs=165.1

Q ss_pred             CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCe--eEeecCCCCceEEEEEecC
Q 010470          246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRV--RHTLTGHTDKVCAVDVSKI  320 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~  320 (510)
                      +..|.+||..... ...+..|...+.++.|+|||+.|+.++.+   ..|++||+.+++.  +..+.+|   ...++|+| 
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-  257 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-  257 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-
Confidence            4689999987554 45567788889999999999999988753   3799999988764  3333333   34689999 


Q ss_pred             CCCEEEEE-eCCCcEEE--EECCCCeEeeeeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCC-ceeeeecccccc
Q 010470          321 SSRHVVSA-AYDRTLKV--WDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTG-KLLSEVAAHSLA  395 (510)
Q Consensus       321 ~~~~l~s~-~~dg~i~i--wd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~-~~~~~~~~~~~~  395 (510)
                      +++.|+.+ +.+|.+.|  ||+.++...........+....|+|||+.|+.+ ..+|...+|++... .....+ .+. .
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~  335 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-G  335 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC-C
Confidence            77766655 46776555  577666654433333457889999999987754 45788888876432 222223 222 2


Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC--Ccc
Q 010470          396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS--KAD  473 (510)
Q Consensus       396 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~  473 (510)
                        .+..|+|+|++|++.+.++ +.+||+.++.........  ..    ..+.|+|||++|++++.+|.+.+|.+.  +|.
T Consensus       336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~----~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~  406 (429)
T PRK01742        336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LD----ESPSISPNGIMIIYSSTQGLGKVLQLVSADGR  406 (429)
T ss_pred             --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CC----CCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence              4578999999998887765 556999887654322221  11    236799999999999999988888753  577


Q ss_pred             eeecccccCcCEEEEEEeCC
Q 010470          474 IVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       474 ~~~~~~~~~~~v~~~~~~~~  493 (510)
                      ....+..|.+.+..++|+|-
T Consensus       407 ~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        407 FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ceEEccCCCCCCCCcccCCC
Confidence            88888888888999999985

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.82  E-value=3.6e-17  Score=152.59  Aligned_cols=290  Identities=17%  Similarity=0.191  Sum_probs=188.9

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEE
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYV  293 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i  293 (510)
                      .+...++......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++++||+++++++ ..+.+.+
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v  104 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSV  104 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred             CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeE
Confidence            34566666554444557899999999999999999999999999998887544 457899999999999886 6889999


Q ss_pred             EEcCCCCeeEeecCC-------CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe--eeeeecCceeEEEEcCCCC
Q 010470          294 WDVNSGRVRHTLTGH-------TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV--NTIIFHSNCNALAFSMDGQ  364 (510)
Q Consensus       294 wd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~i~~i~~~~~~~  364 (510)
                      +|..+.+++..+...       ...+.++..+|....++++.-..+.|.+.|......+  ..+..........|+|+++
T Consensus       105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr  184 (369)
T PF02239_consen  105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR  184 (369)
T ss_dssp             EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred             eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence            999999988877532       3467788888833335555555588988898765433  3444455688999999999


Q ss_pred             EEEEe-cCCCcEEEEECCCCceeeeeccc---ccccEEEEE-------Ec--CCCCEEEEEecCCcEEEEEcCCceeeeE
Q 010470          365 TIFSG-HIDGNLRLWDIQTGKLLSEVAAH---SLAAVTSIS-------LS--RSGNIILTSGRDNLHNLFDIRSLEVCGS  431 (510)
Q Consensus       365 ~l~~~-~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~i~-------~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~  431 (510)
                      +++++ ..+..|.++|..+++.+..+...   +..+...+-       |.  ..+...++.-..+.+.+||..+++.+..
T Consensus       185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~  264 (369)
T PF02239_consen  185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT  264 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred             eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence            87764 55678999999998877655432   112232221       11  1222332333344666789999999999


Q ss_pred             eecCCCeeecCceeEEEcCCCCEEEEE----cCCCeEEEEeCCCcceeeccccc-CcCEEEEEEeCCCCcEEEee--CCC
Q 010470          432 LRATGNRVASNWSRSCISPDESYVAAG----SADGSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGKPLASAD--KNG  504 (510)
Q Consensus       432 ~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~dg  504 (510)
                      +...+.+..     +..+|+++++++.    ...++|.++|..+.+.+..+... ...+..+.|+++|+.+..+.  .+|
T Consensus       265 I~~~G~glF-----i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~  339 (369)
T PF02239_consen  265 IPTQGGGLF-----IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG  339 (369)
T ss_dssp             EE-SSSS-------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred             EECCCCcce-----eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence            988776643     6789999999998    44588999999999888777532 23589999999999665443  344


Q ss_pred             eEEEcC
Q 010470          505 VVCVWT  510 (510)
Q Consensus       505 ~i~iwd  510 (510)
                      .|.+||
T Consensus       340 ~i~v~D  345 (369)
T PF02239_consen  340 AIVVYD  345 (369)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            698886

...

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=2.3e-17  Score=154.69  Aligned_cols=263  Identities=13%  Similarity=0.201  Sum_probs=174.2

Q ss_pred             cCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEee-CCCeEEEEeCC-CCcc--eeccccccc
Q 010470          193 QVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGG-QDKSIKLWDTN-TGSL--SSTLYGCLG  268 (510)
Q Consensus       193 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~~~~~~~~  268 (510)
                      ..++.+..|+....      -.......+. +.+....++++|++++|++++ .++.|.+|++. ++..  ..... ..+
T Consensus         9 ~~~~~I~~~~~~~~------g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~   80 (330)
T PRK11028          9 PESQQIHVWNLNHE------GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG   80 (330)
T ss_pred             CCCCCEEEEEECCC------CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence            44666777764211      0112334443 345678899999999987664 57889999986 3432  22222 234


Q ss_pred             ceeEEEEecCCCEEEEEe-CCCeEEEEEcCCC-C---eeEeecCCCCceEEEEEecCCCCEE-EEEeCCCcEEEEECCCC
Q 010470          269 SVLDLAITHDNRSVIAAS-SSNNLYVWDVNSG-R---VRHTLTGHTDKVCAVDVSKISSRHV-VSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~-~---~~~~~~~~~~~v~~i~~~~~~~~~l-~s~~~dg~i~iwd~~~~  342 (510)
                      ....++|+|+++++++++ .++.|.+|++.+. .   ....+. +.....++.++| +++++ ++...++.|.+||+.+.
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCC
Confidence            567899999999999887 4889999999743 2   222232 234467788999 66666 45556799999999763


Q ss_pred             eEee-------eeeecCceeEEEEcCCCCEEEEecC-CCcEEEEECCC--Cc--eeeeeccc-----ccccEEEEEEcCC
Q 010470          343 YCVN-------TIIFHSNCNALAFSMDGQTIFSGHI-DGNLRLWDIQT--GK--LLSEVAAH-----SLAAVTSISLSRS  405 (510)
Q Consensus       343 ~~~~-------~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~-----~~~~i~~i~~~~~  405 (510)
                      ..+.       .......+..+.|+|+|+++++++. ++.|.+||+..  +.  .+..+...     .......+.++|+
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd  238 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD  238 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence            2221       1223445788999999999988765 89999999973  32  23333211     1112346889999


Q ss_pred             CCEEEEEec-CCcEEEEEcCCce----eeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCC
Q 010470          406 GNIILTSGR-DNLHNLFDIRSLE----VCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGSVYIWSIS  470 (510)
Q Consensus       406 ~~~l~~~~~-d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~  470 (510)
                      |++++++.. ++.|.+|++....    .+......     .....+.++|+|++|++++. +++|.+|+++
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-----~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-----TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-----ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999998864 6899999986432    22222211     12234789999999998775 8899999875

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=1.7e-17  Score=143.72  Aligned_cols=231  Identities=17%  Similarity=0.247  Sum_probs=178.7

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC--CcEEEEECCCCeEe
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCV  345 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~  345 (510)
                      ..+..+.|+.+...|..|+.|| .++|+................|.-+-|+   ..+++..+.+  +.+++++++.+..+
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCceE
Confidence            3556677888888888888887 5777766543321112122334444443   4555555544  45999999999999


Q ss_pred             eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc--ccccEEEEEEcCCCCEEEEEe--cCCcEEEE
Q 010470          346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH--SLAAVTSISLSRSGNIILTSG--RDNLHNLF  421 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~--~d~~i~i~  421 (510)
                      ..+..+.+|.++.++  .+.|+++-.+ .|+|||+++.+.+.++...  +...+.++.+++.+.+++.-+  ..|.|.+|
T Consensus        82 Ce~~fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   82 CEIFFPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             EEEecCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            999999999999986  4556655554 4999999999999888755  324566666666677887643  46899999


Q ss_pred             EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe-EEEEeCCCcceeeccccc--CcCEEEEEEeCCCCcEE
Q 010470          422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS-VYIWSISKADIVRTLKEH--TAPVLSCSWSGLGKPLA  498 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~  498 (510)
                      |+.+.+.+..+..|...+..    ++|+++|.+||++|..|+ |+||.+.+|+.+..|+..  ...|.+++|+|++.+|+
T Consensus       159 d~~nl~~v~~I~aH~~~lAa----lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  159 DTINLQPVNTINAHKGPLAA----LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             EcccceeeeEEEecCCceeE----EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence            99999999999999888876    999999999999999997 699999999999998753  34578999999999999


Q ss_pred             EeeCCCeEEEc
Q 010470          499 SADKNGVVCVW  509 (510)
Q Consensus       499 s~~~dg~i~iw  509 (510)
                      +.|..++|++|
T Consensus       235 ~sS~TeTVHiF  245 (391)
T KOG2110|consen  235 ASSNTETVHIF  245 (391)
T ss_pred             EecCCCeEEEE
Confidence            99999999987

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=6.7e-19  Score=155.10  Aligned_cols=194  Identities=19%  Similarity=0.276  Sum_probs=156.8

Q ss_pred             EEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC-
Q 010470          229 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG-  307 (510)
Q Consensus       229 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-  307 (510)
                      .+++|+++|..+++|+.||+++||++++...+.....|.+.|.++.|+|||+.|++.+.| ..+||+.+++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999998888888888999999999999999999999999 899999999976655542 


Q ss_pred             -CCCceEEEEEecCCC---CE--EEEEeCCCcEEEEECCCC------eEeeeeeecCceeEEEEcCCCCEEEEecCCCcE
Q 010470          308 -HTDKVCAVDVSKISS---RH--VVSAAYDRTLKVWDLHKG------YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       308 -~~~~v~~i~~~~~~~---~~--l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                       .+.....+.|+. ++   .+  ++.....+.|..||+...      +..+.+.....+++++++++|++++.|+.||.|
T Consensus       227 ~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  227 SKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             ccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence             223345566665 33   22  223334566777665421      112222334569999999999999999999999


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      .+++..+.+.+..++..|...|+.+.|+|+.+++++.+.+....+..+.
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9999999999988887777899999999999999999999888887664

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.1e-17  Score=141.17  Aligned_cols=212  Identities=22%  Similarity=0.347  Sum_probs=149.2

Q ss_pred             cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC----CeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEE
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd  338 (510)
                      .+|..-|.++.|.+.|+.+++|+.|++|+|||..+.    .+....+.|.+.|..+.|.+. -|..+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            468888999999999999999999999999997543    356667889999999999764 578899999999999997


Q ss_pred             CCCC-------eE--eeee-eecCceeEEEEcC--CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCC
Q 010470          339 LHKG-------YC--VNTI-IFHSNCNALAFSM--DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG  406 (510)
Q Consensus       339 ~~~~-------~~--~~~~-~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~  406 (510)
                      -...       +-  ..++ ...+.++.++|.|  -|-.+++++.||.++||+....-.+......+  .+..+. +|-|
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~--Ei~~~~-~pp~  166 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH--EIQNVI-DPPG  166 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh--hhhhcc-CCcc
Confidence            5211       11  1122 2235699999999  57789999999999999986554444333221  111000 0101


Q ss_pred             CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC---CCCEEEEEcCC-----CeEEEEeCCCc----ce
Q 010470          407 NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP---DESYVAAGSAD-----GSVYIWSISKA----DI  474 (510)
Q Consensus       407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~d-----g~i~iwd~~~~----~~  474 (510)
                      +                               ......++.|+|   ...+|++|+.+     +.++||....+    ..
T Consensus       167 ~-------------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k  215 (361)
T KOG2445|consen  167 K-------------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK  215 (361)
T ss_pred             c-------------------------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee
Confidence            0                               011112244443   23467777655     46888876543    34


Q ss_pred             eecccccCcCEEEEEEeCCC----CcEEEeeCCCeEEEcC
Q 010470          475 VRTLKEHTAPVLSCSWSGLG----KPLASADKNGVVCVWT  510 (510)
Q Consensus       475 ~~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg~i~iwd  510 (510)
                      +.++.+|..+|++++|.|+-    ..|++++.|| |+||.
T Consensus       216 va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~  254 (361)
T KOG2445|consen  216 VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFK  254 (361)
T ss_pred             ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEE
Confidence            66788999999999999973    3689999999 99984

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.2e-17  Score=147.23  Aligned_cols=194  Identities=23%  Similarity=0.275  Sum_probs=146.8

Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc
Q 010470          313 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA  391 (510)
Q Consensus       313 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  391 (510)
                      .+++|++ ++..+++|+.||++++|+..+...+... ..+..|.++.|+|||++|++-+.| ..+||+..++..+.....
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            6788888 8899999999999999996665544444 455779999999999999999988 899999999977766552


Q ss_pred             -cccccEEEEEEcCCC---CE--EEEEecCCcEEEEEcCCceeeeEeecCCCe-eecCceeEEEcCCCCEEEEEcCCCeE
Q 010470          392 -HSLAAVTSISLSRSG---NI--ILTSGRDNLHNLFDIRSLEVCGSLRATGNR-VASNWSRSCISPDESYVAAGSADGSV  464 (510)
Q Consensus       392 -~~~~~i~~i~~~~~~---~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~i  464 (510)
                       ........+.|+.++   .+  ++.....+.|..||+....--..++..... ....+++++++++|++++.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence             223456778888776   33  333344567777776543221111111111 11246679999999999999999999


Q ss_pred             EEEeCCCcceeeccc-ccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          465 YIWSISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       465 ~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      .|++..+-+.+...+ .|...|+.+.|+|+.+++++.+.|..+.|
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence            999999888776664 59999999999999999999888877665

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=5.1e-18  Score=148.51  Aligned_cols=159  Identities=22%  Similarity=0.374  Sum_probs=135.8

Q ss_pred             cceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCc---------ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          226 GGCASILFEYNSA-RLISGGQDKSIKLWDTNTGS---------LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       226 ~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      .+|..+.|.+++. .++||+.|..|++|-++.+.         ....+..|...|+++.|+|+|..|++|+.+|.|.+|-
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            4799999998776 99999999999999875432         2456778999999999999999999999999999997


Q ss_pred             cC--------C--------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEE
Q 010470          296 VN--------S--------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALA  358 (510)
Q Consensus       296 ~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~  358 (510)
                      ..        +        ......+.+|...|..++|+| ++.++++++.|..+++||+..|.....+..+. .+..++
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            65        2        123456678999999999999 89999999999999999999999998887775 489999


Q ss_pred             EcCCCCEEEEecCCCcEEEEECCCCce
Q 010470          359 FSMDGQTIFSGHIDGNLRLWDIQTGKL  385 (510)
Q Consensus       359 ~~~~~~~l~~~~~dg~i~i~d~~~~~~  385 (510)
                      |.|-++++++-+.|...+.+.+.....
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQV  199 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeee
Confidence            999999999988888777777654433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.3e-17  Score=157.19  Aligned_cols=278  Identities=18%  Similarity=0.247  Sum_probs=201.9

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCC---EEEEEeCCCeEEEEEcCC
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR---SVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~  298 (510)
                      .|-..--..-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|...   ++++++.+|.|++||...
T Consensus        13 gg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~   91 (792)
T KOG1963|consen   13 GGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD   91 (792)
T ss_pred             ccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence            33333344457899998888777 45899999999999999999999999999987654   678999999999999988


Q ss_pred             CCeeEeecCCCCceE-----------------------------------------------------------EEEEec
Q 010470          299 GRVRHTLTGHTDKVC-----------------------------------------------------------AVDVSK  319 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~-----------------------------------------------------------~i~~~~  319 (510)
                      +..+.++..+. ++.                                                           ++.+++
T Consensus        92 ~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~  170 (792)
T KOG1963|consen   92 GELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN  170 (792)
T ss_pred             cEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence            87666554221 111                                                           111111


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEeeeee----ec--CceeEEEEcCCCCEEEEecCCCcEEEEECCC----Cceeeee
Q 010470          320 ISSRHVVSAAYDRTLKVWDLHKGYCVNTII----FH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQT----GKLLSEV  389 (510)
Q Consensus       320 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~  389 (510)
                       .+. +.....+..+.+|+..++. .....    .+  -.+++.+++|+++++++|..||.|.+|.--.    ......+
T Consensus       171 -~ge-~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l  247 (792)
T KOG1963|consen  171 -SGE-FKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL  247 (792)
T ss_pred             -Cce-EEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE
Confidence             111 1111223345566665543 11111    11  2368999999999999999999999996322    1234455


Q ss_pred             cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          390 AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       390 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      .-|+ ..|.++.|+++|.+|++|+..+.+.+|.+.+++ ...++.-+.+    +..+.+|||+.+.+....|+.|.+...
T Consensus       248 HWH~-~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~----I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  248 HWHH-DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSP----ILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             Eecc-cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCe----eEEEEEcCCCCeEEEEecCceEEEEec
Confidence            6666 899999999999999999999999999999887 3344333333    445899999999999999999999998


Q ss_pred             CCcceeeccccc-----------CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          470 SKADIVRTLKEH-----------TAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       470 ~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+.....++.+-           .+-.+.++++|.-+.++-.+..|.|.+||
T Consensus       322 ~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~yd  373 (792)
T KOG1963|consen  322 SDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYD  373 (792)
T ss_pred             cchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEe
Confidence            776555444331           33467889999778899999999999986

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.80  E-value=4.5e-18  Score=153.98  Aligned_cols=247  Identities=15%  Similarity=0.152  Sum_probs=171.6

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce----ecccccccceeEEEE-----ecCCCEEEEEeCCCeEEEEEcC
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLS----STLYGCLGSVLDLAI-----THDNRSVIAASSSNNLYVWDVN  297 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~iwd~~  297 (510)
                      .+....++-.|++|+..-. ..+.+|+...+..+    ....-.....+|-+|     .|.+--+++|-.-|.|.+.|..
T Consensus       125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            3455555666777655432 36888887643221    111111122233334     4566678889889999999876


Q ss_pred             CCCeeEeec----CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCC
Q 010470          298 SGRVRHTLT----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG  373 (510)
Q Consensus       298 ~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg  373 (510)
                      ..+....+.    -....|+|+.|-|.+...++.+-.+|.+++||..       +.......+....+++..+.....-+
T Consensus       204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~~k~~~~f~i~t~ks  276 (636)
T KOG2394|consen  204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQALKDGDQFAILTSKS  276 (636)
T ss_pred             hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------ccccCCCCcccccCCCCeeEEeeeec
Confidence            533222221    1347899999999888899999999999999972       11122222233344666655443221


Q ss_pred             cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      .      .+..++..+.... +.|..++|+|||++|++.+.||.++|||..+.+....++.-...    ..+++|||||+
T Consensus       277 k------~~rNPv~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG----LLCvcWSPDGK  345 (636)
T KOG2394|consen  277 K------KTRNPVARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG----LLCVCWSPDGK  345 (636)
T ss_pred             c------ccCCccceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc----eEEEEEcCCcc
Confidence            1      1224555555444 68999999999999999999999999999987776655544433    44599999999


Q ss_pred             EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470          454 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG  492 (510)
Q Consensus       454 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  492 (510)
                      ||++|+.|.-|.||.+..++.+..-.+|.+.|+.|+|.|
T Consensus       346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999999999999999999999999999999999999983

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=4.3e-17  Score=136.59  Aligned_cols=278  Identities=18%  Similarity=0.279  Sum_probs=197.1

Q ss_pred             eeeccccccceEEEEEec--C-CCEEEEeeC----CCeEEEEeCC--CCcceec-ccccccceeEEEEecCCC----EEE
Q 010470          218 KHKINAHEGGCASILFEY--N-SARLISGGQ----DKSIKLWDTN--TGSLSST-LYGCLGSVLDLAITHDNR----SVI  283 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~--~-~~~l~s~~~----dg~i~iwd~~--~~~~~~~-~~~~~~~v~~~~~~~~~~----~l~  283 (510)
                      +.++.++- ++.++.|+.  + +.+|+.|+-    .+.|.|..+.  +++.+.. -..|.-+++.+.|.|+..    .++
T Consensus        38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL  116 (364)
T KOG0290|consen   38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL  116 (364)
T ss_pred             EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence            44555443 578888883  3 346888874    4567776553  3443322 246888999999999863    233


Q ss_pred             EEeCCCeEEEEEcCC--CCe--eEe-----ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE----eeeeee
Q 010470          284 AASSSNNLYVWDVNS--GRV--RHT-----LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC----VNTIIF  350 (510)
Q Consensus       284 ~~~~d~~i~iwd~~~--~~~--~~~-----~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~  350 (510)
                      +.+. ..+++|.+..  .+.  ...     -..+..+++++.|+..+.++|.+++-|-+..|||+.++..    .+.+.+
T Consensus       117 ATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH  195 (364)
T KOG0290|consen  117 ATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH  195 (364)
T ss_pred             hccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence            3333 3799999873  221  111     1236678999999999999999999999999999998732    333444


Q ss_pred             cCceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecccc--cccEEEEEEcCC-CCEEEEEecC-CcEEEEEcCC
Q 010470          351 HSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRS-GNIILTSGRD-NLHNLFDIRS  425 (510)
Q Consensus       351 ~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~i~~~~~-~~~l~~~~~d-~~i~i~d~~~  425 (510)
                      ...|..++|...+ +.|++.+.||.+++||+|.......+....  ..+...++|++. -+++++-..| ..|.|.|++.
T Consensus       196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence            5679999999754 478899999999999999876554443322  267888999874 4577765555 5799999996


Q ss_pred             -ceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcc------eeecccccCcCEEEEEEeCC-CCc
Q 010470          426 -LEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKAD------IVRTLKEHTAPVLSCSWSGL-GKP  496 (510)
Q Consensus       426 -~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~-~~~  496 (510)
                       ..++..++.|...+..    ++|.|. +..|+++++|..+.|||+...-      ++..+. -.+.|+.+.|++. +.+
T Consensus       276 P~tpva~L~~H~a~VNg----IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dw  350 (364)
T KOG0290|consen  276 PCTPVARLRNHQASVNG----IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDW  350 (364)
T ss_pred             CCcceehhhcCcccccc----eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCE
Confidence             4567778888777766    999995 5689999999999999987632      222222 4567999999965 446


Q ss_pred             EEEeeC
Q 010470          497 LASADK  502 (510)
Q Consensus       497 l~s~~~  502 (510)
                      ++.+..
T Consensus       351 iai~~~  356 (364)
T KOG0290|consen  351 IAICFG  356 (364)
T ss_pred             EEEEec
Confidence            666643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=2.4e-18  Score=158.64  Aligned_cols=239  Identities=20%  Similarity=0.294  Sum_probs=175.2

Q ss_pred             EecCCCEEEE--eeCCCeEEEEeCCC-Ccceec-cc--ccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCCC------
Q 010470          233 FEYNSARLIS--GGQDKSIKLWDTNT-GSLSST-LY--GCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNSG------  299 (510)
Q Consensus       233 ~s~~~~~l~s--~~~dg~i~iwd~~~-~~~~~~-~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~------  299 (510)
                      |+.+..++++  .|..|.|-||+++. |++... +.  .....|+++.|.| |...|++++.||.|++|.+..+      
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            3334445543  45578999999864 333211 11  2356799999998 5678999999999999998754      


Q ss_pred             -CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEE
Q 010470          300 -RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRL  377 (510)
Q Consensus       300 -~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i  377 (510)
                       .+...++.|...|+++.|+|.-.+.|+++++|.+|++||+.+++....+.+|. .|.+++|+|+|+.+++.+.||+|++
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV  746 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence             35567889999999999999888999999999999999999998888887774 5999999999999999999999999


Q ss_pred             EECCCCce-eeeecccccccEEEEEEcCCCCEEEEEecCC----cEEEEEcCCce--eeeEeecCCCeeecCceeEEEcC
Q 010470          378 WDIQTGKL-LSEVAAHSLAAVTSISLSRSGNIILTSGRDN----LHNLFDIRSLE--VCGSLRATGNRVASNWSRSCISP  450 (510)
Q Consensus       378 ~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~  450 (510)
                      |..+++.. +..-.+.....--.|.|--+|+++++.+.|.    .|.+||..+..  .+.+......+   ......+.+
T Consensus       747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap---s~LvP~YD~  823 (1012)
T KOG1445|consen  747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP---SPLVPHYDY  823 (1012)
T ss_pred             eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC---ccccccccC
Confidence            99987653 3333333334455678888999999888764    68889877532  22222111111   011123566


Q ss_pred             CCC-EEEEEcCCCeEEEEeCCCcce
Q 010470          451 DES-YVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       451 ~~~-~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      |.+ ++++|-.|..|++|.+-...+
T Consensus       824 Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  824 DSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             CCceEEEecCCCceEEEEEecCCCc
Confidence            655 567888899999999865543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.79  E-value=1.1e-15  Score=130.14  Aligned_cols=269  Identities=15%  Similarity=0.252  Sum_probs=185.8

Q ss_pred             eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccc--eeEEEEecCCCEEE-EEeCC------CeEEEEEcCC
Q 010470          228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS--VLDLAITHDNRSVI-AASSS------NNLYVWDVNS  298 (510)
Q Consensus       228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~-~~~~d------~~i~iwd~~~  298 (510)
                      ..+++|+.|...+++|..+| .+||+.+.-+.......+.+.  +..+-|  ..++++ +|+.+      +.|.|||-..
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence            44599999999999988776 899998875443332222222  222223  234444 34333      4899999766


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEeeeeeecCcee---EEEEcCCCCEEEE-ecCCC
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNTIIFHSNCN---ALAFSMDGQTIFS-GHIDG  373 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~i~---~i~~~~~~~~l~~-~~~dg  373 (510)
                      .+++.++. ...+|.++.+.+   ..|++.- .+.|+||... +.+.++.+....++.   +++-+.+..+|+. |..-|
T Consensus        85 ~~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G  159 (346)
T KOG2111|consen   85 ERCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG  159 (346)
T ss_pred             CcEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence            77777776 678999999976   4455554 6799999987 445555554443332   3332223444543 56679


Q ss_pred             cEEEEECCCCce--eeeecccccccEEEEEEcCCCCEEEEEecCCc-EEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470          374 NLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDNL-HNLFDIRSLEVCGSLRATGNRVASNWSRSCISP  450 (510)
Q Consensus       374 ~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  450 (510)
                      .|.|-|+...+.  ...+..|. +.|.|++++-+|..+++++..|+ |+|||..++..+..++....  ...+.+++|||
T Consensus       160 qvQi~dL~~~~~~~p~~I~AH~-s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d--~A~iy~iaFSp  236 (346)
T KOG2111|consen  160 QVQIVDLASTKPNAPSIINAHD-SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD--RADIYCIAFSP  236 (346)
T ss_pred             eEEEEEhhhcCcCCceEEEccc-CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc--hheEEEEEeCC
Confidence            999999976655  46666666 99999999999999999999995 89999999999988764433  34567799999


Q ss_pred             CCCEEEEEcCCCeEEEEeCCCcceee------------------------cccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          451 DESYVAAGSADGSVYIWSISKADIVR------------------------TLKEHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       451 ~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                      ++.+|++.|+.|+|+||.+.....-.                        .+.-..++..-++|..+.+.++..+.||..
T Consensus       237 ~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy  316 (346)
T KOG2111|consen  237 NSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY  316 (346)
T ss_pred             CccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence            99999999999999999876522110                        011123455666777665667777777765


Q ss_pred             E
Q 010470          507 C  507 (510)
Q Consensus       507 ~  507 (510)
                      +
T Consensus       317 ~  317 (346)
T KOG2111|consen  317 Y  317 (346)
T ss_pred             E
Confidence            3

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1.5e-16  Score=153.34  Aligned_cols=235  Identities=16%  Similarity=0.131  Sum_probs=163.5

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe---CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS---SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR  323 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  323 (510)
                      ..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+   .+..|++|++.+++.... ....+.+..+.|+| ++.
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SP-DG~  255 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSP-DGS  255 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECC-CCC
Confidence            3699999875543 34455667899999999999988765   245799999988764332 22333455689999 666


Q ss_pred             EEEE-EeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC-C--cEEEEECCCCceeeeecccccccE
Q 010470          324 HVVS-AAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID-G--NLRLWDIQTGKLLSEVAAHSLAAV  397 (510)
Q Consensus       324 ~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~i  397 (510)
                      .|+. .+.+|  .|++||+.++...........+....|+|||+.|+..+.+ |  .|+++|+.++... .+.... ...
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~-~~~  333 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEG-SQN  333 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCC-CCc
Confidence            6654 44455  5899999988766555455567889999999988766543 4  4555677666543 333322 445


Q ss_pred             EEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe---EEEEeCCC
Q 010470          398 TSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS---VYIWSISK  471 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~---i~iwd~~~  471 (510)
                      ....|+|+|++|+..+.+   ..|.+||+.++.... +.... ..    ....|+|||++|+.++.++.   +.++++ +
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~-~~----~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~  406 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTF-LD----ETPSIAPNGTMVIYSSSQGMGSVLNLVST-D  406 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCC-CC----CCceECCCCCEEEEEEcCCCceEEEEEEC-C
Confidence            678999999998876544   358889998776432 22211 11    12679999999999887764   677776 4


Q ss_pred             cceeecccccCcCEEEEEEeCC
Q 010470          472 ADIVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       472 ~~~~~~~~~~~~~v~~~~~~~~  493 (510)
                      |.....+..|.+.+...+|+|-
T Consensus       407 G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        407 GRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCCeEECccCCCCcCCcccCCC
Confidence            6666777778888999999983

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=4.1e-19  Score=157.83  Aligned_cols=229  Identities=18%  Similarity=0.250  Sum_probs=199.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI  348 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  348 (510)
                      ....+.++.+|++++.|+..|.|..+|..++++...+. -...|.++.|.. +..+|+++- ...++|||- .|..+..+
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~-~GtElHCl  206 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAVAQ-KKYVYVYDN-NGTELHCL  206 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHhhh-hceEEEecC-CCcEEeeh
Confidence            44779999999999999999999999999999888876 457788999987 566666554 788999996 58889999


Q ss_pred             eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee
Q 010470          349 IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV  428 (510)
Q Consensus       349 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~  428 (510)
                      ..+..+..+.|.|.--+|++++..|.+..-|+.+|+.+..+.... +.+..++-+|-+..+-+|..+|+|.+|...+.++
T Consensus       207 k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~-G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  207 KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA-GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-CccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            999999999999999999999999999999999999999998877 8999999999999999999999999999999988


Q ss_pred             eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      +..+..|..++.+    +++.++|+|+++.+.|..++|||+.+...+.++.. ..+...+++|..|  +++++....|.|
T Consensus       286 LvKiLcH~g~V~s----iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i  358 (545)
T KOG1272|consen  286 LVKILCHRGPVSS----IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI  358 (545)
T ss_pred             HHHHHhcCCCcce----EEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence            8888888877766    99999999999999999999999999877666654 4567788898765  444455568888


Q ss_pred             c
Q 010470          509 W  509 (510)
Q Consensus       509 w  509 (510)
                      |
T Consensus       359 w  359 (545)
T KOG1272|consen  359 W  359 (545)
T ss_pred             e
Confidence            8

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=1.2e-17  Score=151.23  Aligned_cols=209  Identities=16%  Similarity=0.214  Sum_probs=163.0

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEE
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD  316 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~  316 (510)
                      ...|+.+++||.+.|.+-. ++....+..|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++-....+|.|++
T Consensus        75 ~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence            3478888999999998754 777788899999999999999999999999999999998 67777777777788999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc
Q 010470          317 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA  395 (510)
Q Consensus       317 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  395 (510)
                      |.|+.++.+++.+  +.+.|=.+.....+-....| +-|.++.|+|..+.+++|+.|-..++||. -|..+..-..+. .
T Consensus       153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~e-y  228 (737)
T KOG1524|consen  153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEE-Y  228 (737)
T ss_pred             ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhc-c
Confidence            9996666666665  45555555544444444444 44899999999999999999999999996 677777666666 8


Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       396 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      +|++++|+|+ ..++.++.+ +.++-               .+....+..++||+||..+++|+..|.+.+-.
T Consensus       229 ~ITSva~npd-~~~~v~S~n-t~R~~---------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  229 AITSVAFNPE-KDYLLWSYN-TARFS---------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             ceeeeeeccc-cceeeeeee-eeeec---------------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence            9999999999 555655532 23311               11223344589999999999999999876543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.77  E-value=8.8e-17  Score=136.66  Aligned_cols=237  Identities=16%  Similarity=0.203  Sum_probs=177.7

Q ss_pred             ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC-C
Q 010470          265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL-H  340 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~-~  340 (510)
                      ....+|+|.+|++|+..++++..+..|.||......   ..+++..|...|++++|+| ..+.|++|+.|..-++|.. .
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCC
Confidence            345789999999999999999999999999987654   6788999999999999999 8889999999999999998 4


Q ss_pred             CCeEee---eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee---eeecccccccEEEEEEcCCCCEEEEEec
Q 010470          341 KGYCVN---TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL---SEVAAHSLAAVTSISLSRSGNIILTSGR  414 (510)
Q Consensus       341 ~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~  414 (510)
                      .++-..   .+......+++.|+|.++.|++|+....|.||-+.....-   +.+..+..+.|++++|+|++-++++|+.
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence            444333   3345567999999999999999999999999887654322   2333344478999999999999999999


Q ss_pred             CCcEEEEEcCCce--------------eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-eeeccc
Q 010470          415 DNLHNLFDIRSLE--------------VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTLK  479 (510)
Q Consensus       415 d~~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~  479 (510)
                      |+..+||..--..              +...+..........+..+.|+|+|..|+-.+.|+++.+-|..... .+..+.
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~  246 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA  246 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence            9999998642100              0000111111223345568999999999999999999999976654 344444


Q ss_pred             ccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          480 EHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       480 ~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      ...-|..++.|-.+. .++.++.|
T Consensus       247 ~~~lP~ls~~~ise~-~vv~ag~~  269 (361)
T KOG1523|consen  247 TAQLPLLSVSWISEN-SVVAAGYD  269 (361)
T ss_pred             hccCCceeeEeecCC-ceeecCCC
Confidence            334677788876543 34444444

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.3e-17  Score=142.00  Aligned_cols=247  Identities=13%  Similarity=0.136  Sum_probs=185.9

Q ss_pred             ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC------CCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCc
Q 010470          261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS------GRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRT  333 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~  333 (510)
                      +.+.+|.+.|.++.|+.++++|++|+.|..+++|++..      .+++.... .|...|.|++|.. .+.++++|+.+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcce
Confidence            34568999999999999999999999999999999853      35555443 3568999999987 8889999999999


Q ss_pred             EEEEECCCCeEeeeeeecC---ceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeee-cccccccEEEEEEcCCC-C
Q 010470          334 LKVWDLHKGYCVNTIIFHS---NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEV-AAHSLAAVTSISLSRSG-N  407 (510)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~-~~~~~~~i~~i~~~~~~-~  407 (510)
                      |...|+.+.+.+..+....   .|..+..+|..+.|++.+.+|.|.+||.+... +...+ .........++-|+|.. .
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            9999999999888887664   69999999999999999999999999998654 22222 22223678889999965 4


Q ss_pred             EEEEEecCCcEEEEEcCCceee-eEeecCC--CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce-eecccc---
Q 010470          408 IILTSGRDNLHNLFDIRSLEVC-GSLRATG--NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI-VRTLKE---  480 (510)
Q Consensus       408 ~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~---  480 (510)
                      +|++.+..+-+.+||.+..... .......  ..-...|..+.|+|+|+.+.+--....-.+||+.+..+ +..+..   
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~  288 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN  288 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence            6777888889999999864321 1111111  11123466688999999988776655666778776443 222221   


Q ss_pred             ---cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          481 ---HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       481 ---~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                         ....+.+++|..|- .+++|+.+-.|++|
T Consensus       289 GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~W  319 (609)
T KOG4227|consen  289 GYCNIKTIKSMTFIDDY-TVATGSDHWGIHIW  319 (609)
T ss_pred             cceeeeeeeeeeeecce-eeeccCcccceEEE
Confidence               12246778887664 49999999999999

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4e-16  Score=134.83  Aligned_cols=277  Identities=17%  Similarity=0.209  Sum_probs=180.3

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC----Ce
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----RV  301 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~  301 (510)
                      .+..++|++.-..++++..|-.|++||-.. +....++ .....|++++|-|.+..-++.+..+-|.+|.....    ..
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~  178 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN  178 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence            477789998777789999999999999876 3333333 44678999999998765554444556999986521    11


Q ss_pred             ----------eEeecCCCCceEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEe
Q 010470          302 ----------RHTLTGHTDKVCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSG  369 (510)
Q Consensus       302 ----------~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~  369 (510)
                                +....+| .+|+++.|.+ ++..+++++. |..|.|||..++..+... ...+.+.-+.|+|||.+|+++
T Consensus       179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             cccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence                      1122344 7899999999 7888887775 678999999999887766 445668899999999999999


Q ss_pred             cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee---------------eeEe--
Q 010470          370 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV---------------CGSL--  432 (510)
Q Consensus       370 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------------~~~~--  432 (510)
                      +.|+..++|............... +.|...+|+|+|++|+..+... -.+|.+.....               +..+  
T Consensus       257 t~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e  334 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE  334 (445)
T ss_pred             cccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchh
Confidence            999999999654433333333333 6899999999999776554332 22343321000               0000  


Q ss_pred             ---ecCCCeeecCceeEEEcCCCCEEEEEcCCC--------eEEEEeCCCcceeecc----cccCcCEEEEEEeC---CC
Q 010470          433 ---RATGNRVASNWSRSCISPDESYVAAGSADG--------SVYIWSISKADIVRTL----KEHTAPVLSCSWSG---LG  494 (510)
Q Consensus       433 ---~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~---~~  494 (510)
                         ......+.....+++|+|.|.++++.-..+        .|.+||....-++.-.    .+.. ....++|+|   +|
T Consensus       335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge-~P~~IsF~pl~n~g  413 (445)
T KOG2139|consen  335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGE-YPAYISFGPLKNEG  413 (445)
T ss_pred             hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCC-CCceEEeeecccCC
Confidence               011111223455689999999999876543        3667776543322211    1111 134455554   34


Q ss_pred             CcEEEeeCCCeEEEc
Q 010470          495 KPLASADKNGVVCVW  509 (510)
Q Consensus       495 ~~l~s~~~dg~i~iw  509 (510)
                      ..|..+=..|.+.-|
T Consensus       414 ~lLsiaWsTGriq~y  428 (445)
T KOG2139|consen  414 RLLSIAWSTGRIQRY  428 (445)
T ss_pred             cEEEEEeccCceEee
Confidence            455555556665543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.77  E-value=5e-17  Score=136.07  Aligned_cols=223  Identities=20%  Similarity=0.266  Sum_probs=165.2

Q ss_pred             EecccccccccccCCCccceeecc-ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-eeccc-----cccccee
Q 010470          199 RRSEEGAEFFAESTVPSTCKHKIN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTLY-----GCLGSVL  271 (510)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~  271 (510)
                      .+|......-.....+..++..+. .|-|.|.|+.|.|++..+++-. |..|.+|++..+.. +..+.     .+....+
T Consensus        96 aiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ft  174 (370)
T KOG1007|consen   96 AIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFT  174 (370)
T ss_pred             EEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceec
Confidence            444433333333445567777776 6778999999999999998877 88999999987765 22221     3455677


Q ss_pred             EEEEec--CCCEEEEEeCCCeEEEEEcCCCCeeEee-cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeee
Q 010470          272 DLAITH--DNRSVIAASSSNNLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNT  347 (510)
Q Consensus       272 ~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~  347 (510)
                      +-+|+|  +++.++ ...|+++..||+++.+....+ ..|...|..+.|+|....+|++|+.||.|++||.+.- .++..
T Consensus       175 sg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e  253 (370)
T KOG1007|consen  175 SGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE  253 (370)
T ss_pred             ccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence            889998  555554 456789999999988766665 4688899999999987889999999999999999854 56677


Q ss_pred             eeecCc-eeEEEEcCC-CCEEEEecCCCcEEEEECCCCc-----------------------------eeeeeccccccc
Q 010470          348 IIFHSN-CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGK-----------------------------LLSEVAAHSLAA  396 (510)
Q Consensus       348 ~~~~~~-i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~~  396 (510)
                      +..|+. +.++.|+|. ..+|++|+.|..|.+|...+-.                             .+.++..|. ..
T Consensus       254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE-DS  332 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE-DS  332 (370)
T ss_pred             cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc-cc
Confidence            776654 999999994 5677799999999999653211                             122334444 78


Q ss_pred             EEEEEEcCCCCE-EEEEecCCcEEEEEcC
Q 010470          397 VTSISLSRSGNI-ILTSGRDNLHNLFDIR  424 (510)
Q Consensus       397 i~~i~~~~~~~~-l~~~~~d~~i~i~d~~  424 (510)
                      |.+++|+.-..+ |++-+.||.+.|-.+.
T Consensus       333 VY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  333 VYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             eEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            999999986664 5667889988776554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1e-16  Score=146.38  Aligned_cols=276  Identities=13%  Similarity=0.109  Sum_probs=199.1

Q ss_pred             cccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee
Q 010470          224 HEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR  302 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  302 (510)
                      |....+.|..+|||+|+ +||..--.|++||+.+..+...-......|.-.-++.|-..++.-..|.+|-+-.- .|...
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~hy  128 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRHY  128 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCeee
Confidence            55667889999999986 67777889999999876654333333455665666666666777777777766542 22211


Q ss_pred             EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470          303 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       303 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  381 (510)
                       .+. -...-..++++..+- -|++++....|+-+++..|..+..+... ..++++.+++-..+|++|+.+|.|.+||.+
T Consensus       129 -~~R-IP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR  205 (703)
T KOG2321|consen  129 -RTR-IPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR  205 (703)
T ss_pred             -eee-cCcCCccccccCCCc-cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence             111 112234455655333 3555555778999999999999888776 569999999999999999999999999999


Q ss_pred             CCceeeeecccc----------cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          382 TGKLLSEVAAHS----------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       382 ~~~~~~~~~~~~----------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      +...+..+....          ...|+++.|+.+|-.+++|+.+|.+.|||++..+++..-.. ...  .++..+.|.+.
T Consensus       206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh-~~e--~pi~~l~~~~~  282 (703)
T KOG2321|consen  206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH-GYE--LPIKKLDWQDT  282 (703)
T ss_pred             hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc-CCc--cceeeeccccc
Confidence            876665554321          12499999999999999999999999999999887655432 222  23344667554


Q ss_pred             --CCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          452 --ESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       452 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                        ++.+++. +...++|||-.+|+....+.. ...++.+|+-|++.+++++..++.+..
T Consensus       283 ~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  283 DQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             CCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence              3445543 456799999999999888764 445999999999999999988876643

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=8.7e-17  Score=134.82  Aligned_cols=236  Identities=16%  Similarity=0.211  Sum_probs=169.6

Q ss_pred             ccccceEEEEEecCCC-----EEEEeeCCCeEEEEeCCC--Ccc--eec-----ccccccceeEEEEec-CCCEEEEEeC
Q 010470          223 AHEGGCASILFEYNSA-----RLISGGQDKSIKLWDTNT--GSL--SST-----LYGCLGSVLDLAITH-DNRSVIAASS  287 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~-----~l~s~~~dg~i~iwd~~~--~~~--~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~  287 (510)
                      .|.-+++.+.|.|+..     +|||++  ..+++|.+..  .+.  ...     -..+.+++++..|+. +-+++.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            5788999999999863     566654  4799999863  221  111     124567899999976 5567888899


Q ss_pred             CCeEEEEEcCCCC---eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee----cCceeEEEEc
Q 010470          288 SNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF----HSNCNALAFS  360 (510)
Q Consensus       288 d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~i~~i~~~  360 (510)
                      |-+..|||++++.   ....+-.|...|..++|...+.+.|++.|.||++++||++.-..-..+..    +.+...++|+
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn  251 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN  251 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence            9999999999873   45667789999999999987778999999999999999986543322221    2346778888


Q ss_pred             C-CCCEEEEec-CCCcEEEEECCCC-ceeeeecccccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEe-ecC
Q 010470          361 M-DGQTIFSGH-IDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSL-RAT  435 (510)
Q Consensus       361 ~-~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~  435 (510)
                      + |-+++++-. ....|.+.|+|.. .++..+..|. +.|+.|+|.|. ...|++++.|..+.+||+......... ...
T Consensus       252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~-a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil  330 (364)
T KOG0290|consen  252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ-ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL  330 (364)
T ss_pred             cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc-ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence            7 455666543 4457999999975 5677788887 99999999995 568999999999999999753320000 000


Q ss_pred             CCeeecCceeEEEcC-CCCEEEEEcCC
Q 010470          436 GNRVASNWSRSCISP-DESYVAAGSAD  461 (510)
Q Consensus       436 ~~~~~~~~~~~~~s~-~~~~l~~~~~d  461 (510)
                      .......+..+.|++ .+.+|+++..+
T Consensus       331 ay~a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  331 AYTAGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             hhhccceeeeeeecccCCCEEEEEecC
Confidence            011122345588885 57778777643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=1e-18  Score=165.80  Aligned_cols=237  Identities=22%  Similarity=0.374  Sum_probs=190.6

Q ss_pred             ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      .+..+.+|.+.|+|+.|...|.++++|+.|..++||...++.+.....||.+.++.++++. ++.++++++.|..|++|-
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEe
Confidence            3556779999999999999999999999999999999999999999999999999999987 788899999999999999


Q ss_pred             CCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee---eeecccccccEEEEEEcCCCCEEEEEec
Q 010470          339 LHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL---SEVAAHSLAAVTSISLSRSGNIILTSGR  414 (510)
Q Consensus       339 ~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~  414 (510)
                      +..+.++..+.++. .|++++|+|-.    +.+.||++++||.+-.-.+   .........-+.++.|..++..+++++.
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            99999999998875 59999999965    7788999999998711111   1112222256788888889999999999


Q ss_pred             CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCC
Q 010470          415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       415 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  493 (510)
                      |+.-..|.......      +......    +..+.+ ..+.++.-.+-.+++|++.+|..+..+.+|...+..+.++|-
T Consensus       337 d~ea~n~e~~~l~~------~~~~lif----~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAW------RSNLLIF----VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF  406 (1113)
T ss_pred             CcccccchhhHhhh------hccceEE----EeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence            99888876642111      1111000    111112 245666777888999999999999999999999999999998


Q ss_pred             CCcE-EEeeCCCeEEEcC
Q 010470          494 GKPL-ASADKNGVVCVWT  510 (510)
Q Consensus       494 ~~~l-~s~~~dg~i~iwd  510 (510)
                      +..+ .+++.||...|||
T Consensus       407 n~ri~msag~dgst~iwd  424 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWD  424 (1113)
T ss_pred             CcHhhhhccCCCceEeee
Confidence            7754 5899999999997

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=3.2e-16  Score=136.85  Aligned_cols=261  Identities=18%  Similarity=0.195  Sum_probs=193.4

Q ss_pred             cccceEEEEEecCCC--EEEEeeCCCeEEEEeCCCCcceec------ccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          224 HEGGCASILFEYNSA--RLISGGQDKSIKLWDTNTGSLSST------LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       224 h~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      -...|+.++|.-+++  .+...+.|..+..+......+...      .....++|..+...  +..|++|-.+|.+.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence            345688888876554  455555677777777765554333      33445666666654  44688889999999999


Q ss_pred             cCCCC----eeEeecCCCCceEEEEEecCCCCEEEEEeCC--CcEEEEECCCCeEeeeeeec----------CceeEEEE
Q 010470          296 VNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCVNTIIFH----------SNCNALAF  359 (510)
Q Consensus       296 ~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~----------~~i~~i~~  359 (510)
                      ...+.    ....+..+ ..+..+.-++....++++||..  ..+.+||+...+.+..-...          --++++.|
T Consensus       132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            87432    23333322 5677777777677888889998  89999999988655543322          12678889


Q ss_pred             cCC--CCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE-eecC
Q 010470          360 SMD--GQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS-LRAT  435 (510)
Q Consensus       360 ~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~  435 (510)
                      .+.  ...|++++.-+.+++||++.+ +++..+.... .+++++...|+|+.+++|..-+.+..||++.+..... +.+.
T Consensus       211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E-~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE-NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             cCCCCCceEEEEecceeEEEecCcccCcceeEecccc-CcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence            887  789999999999999999876 4566666655 8999999999999999999999999999999887665 4444


Q ss_pred             CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCC
Q 010470          436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  493 (510)
                      .+    .+..+..+|.+.++++++-|..|+|+|+.+.+++...- -...++++-+.++
T Consensus       290 tG----sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  290 TG----SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             cC----CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            44    34458899999999999999999999999977665443 2344567766554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=2e-16  Score=152.91  Aligned_cols=219  Identities=16%  Similarity=0.162  Sum_probs=151.8

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCC---CeEEEEeCCCCcc--eecccccccceeEEEEecCCCEEEEEe-CCCeE
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNTGSL--SSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNL  291 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i  291 (510)
                      ...+..|...+.+..|||||+.|+.++.+   ..|++||+.++..  +..+.++   ...++|+|||+.|++++ .+|.+
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence            45567788899999999999999887654   3699999988754  3333333   34689999999888765 57765


Q ss_pred             EE--EEcCCCCeeEeecCCCCceEEEEEecCCCCEEE-EEeCCCcEEEEECCCC-eEeeeeeecCceeEEEEcCCCCEEE
Q 010470          292 YV--WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV-SAAYDRTLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIF  367 (510)
Q Consensus       292 ~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~  367 (510)
                      .|  ||+.++. ...+..+...+....|+| ++..|+ ++..+|...+|++... .....+. +.. .+..|+|+|+.|+
T Consensus       273 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~-~~~-~~~~~SpDG~~ia  348 (429)
T PRK01742        273 NIYVMGANGGT-PSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVG-GRG-YSAQISADGKTLV  348 (429)
T ss_pred             EEEEEECCCCC-eEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEec-CCC-CCccCCCCCCEEE
Confidence            55  5665555 445666777788999999 666555 4446788888876432 2222222 222 4578999999998


Q ss_pred             EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC--CceeeeEeecCCCeeecCcee
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR--SLEVCGSLRATGNRVASNWSR  445 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~  445 (510)
                      .++.+ .+.+||+.++........   ....++.|+|+|++|+.++.++.+.+|++.  ++.....+..+...+..    
T Consensus       349 ~~~~~-~i~~~Dl~~g~~~~lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~----  420 (429)
T PRK01742        349 MINGD-NVVKQDLTSGSTEVLSST---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKF----  420 (429)
T ss_pred             EEcCC-CEEEEECCCCCeEEecCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCC----
Confidence            87765 466799988875432222   223567899999999999999988888763  46666666555443332    


Q ss_pred             EEEcCC
Q 010470          446 SCISPD  451 (510)
Q Consensus       446 ~~~s~~  451 (510)
                      ++|+|-
T Consensus       421 p~wsp~  426 (429)
T PRK01742        421 PAWSPY  426 (429)
T ss_pred             cccCCC
Confidence            667763

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=5.2e-16  Score=150.35  Aligned_cols=234  Identities=17%  Similarity=0.190  Sum_probs=160.6

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR  323 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  323 (510)
                      ..|.+||.... ....+..+...+.+..|+|||+.|+.++.+   ..|++||+.+++... +..+.+...+..|+| ++.
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-DG~  260 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-DGR  260 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-CCC
Confidence            46999998644 445566677789999999999999988743   479999998876543 333444556789999 565


Q ss_pred             EE-EEEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec-CCCc--EEEEECCCCceeeeecccccccE
Q 010470          324 HV-VSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGN--LRLWDIQTGKLLSEVAAHSLAAV  397 (510)
Q Consensus       324 ~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~i  397 (510)
                      .+ ++.+.+|  .|++||+.++...............+|+|||+.|+.++ .+|.  |+++|+.+++... +.... ...
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g-~~~  338 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQG-NYN  338 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCC-CCc
Confidence            44 5556555  59999998887544333333356789999999888665 3444  7777876665433 22222 344


Q ss_pred             EEEEEcCCCCEEEEEecCC---cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCC
Q 010470          398 TSISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISK  471 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~  471 (510)
                      ..++|+|+|++|+..+.++   .|.+||+.++... .+.. ....    ....|+|||++|+..+.+   +.|+++++. 
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~----~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-  411 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLD----ESPSFAPNGSMVLYATREGGRGVLAAVSTD-  411 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCC----CCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence            5789999999998765443   6899999877654 2221 1111    126899999998876653   468888875 


Q ss_pred             cceeecccccCcCEEEEEEeC
Q 010470          472 ADIVRTLKEHTAPVLSCSWSG  492 (510)
Q Consensus       472 ~~~~~~~~~~~~~v~~~~~~~  492 (510)
                      +.....+..+.+.+...+|+|
T Consensus       412 g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        412 GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCceEEcccCCCCCCCCccCC
Confidence            445555655667778888987

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=4e-16  Score=154.55  Aligned_cols=249  Identities=16%  Similarity=0.206  Sum_probs=177.2

Q ss_pred             CcceecccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCC-------CeeEeecCCCCceEEEEEecCCCCEEEEE
Q 010470          257 GSLSSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSG-------RVRHTLTGHTDKVCAVDVSKISSRHVVSA  328 (510)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~  328 (510)
                      |..+..+..|...+..++.++.. .++++|+.||+|++|+...-       +...++......+.++...+ .++.++.+
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVS 1116 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEE
Confidence            67788888999999999887766 99999999999999998631       23344444567889999988 78899999


Q ss_pred             eCCCcEEEEECCCCe-------Eeeeeeec--Cc-eeEEEEcC-CCC-EEEEecCCCcEEEEECCCCceeeeecc--ccc
Q 010470          329 AYDRTLKVWDLHKGY-------CVNTIIFH--SN-CNALAFSM-DGQ-TIFSGHIDGNLRLWDIQTGKLLSEVAA--HSL  394 (510)
Q Consensus       329 ~~dg~i~iwd~~~~~-------~~~~~~~~--~~-i~~i~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~  394 (510)
                      +.||.|.+.++....       +.......  +. +..-++.. .+. .++.++..+.|..||+++......+..  .+ 
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h- 1195 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH- 1195 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc-
Confidence            999999999987521       11111111  22 22333322 233 677888899999999998776665543  33 


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC---CCEEEE-Ec-CCCeEEEEeC
Q 010470          395 AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD---ESYVAA-GS-ADGSVYIWSI  469 (510)
Q Consensus       395 ~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~-~~-~dg~i~iwd~  469 (510)
                      +.|++++.+|.+++++.|+..|.+.+||+|-+.++..+..+..   .++..++.+|-   ..+.++ |+ ..+-|.+|++
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~---~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR---APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc---CCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            8899999999999999999999999999998887776654433   34444555543   344444 44 5778999999


Q ss_pred             CCcceeeccccc-------------------CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          470 SKADIVRTLKEH-------------------TAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       470 ~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+|..-..+...                   .-+...+.+...+..+.+|+.|+.|+.||
T Consensus      1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred             ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence            987544433211                   11122334444456899999999999998

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=2.2e-15  Score=146.17  Aligned_cols=234  Identities=14%  Similarity=0.141  Sum_probs=160.7

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC---CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS---SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR  323 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  323 (510)
                      ..|.+||... .....+..+...+.+..|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+.+..|+| ++.
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG~  258 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-DGR  258 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-CCC
Confidence            4788999864 444556678889999999999999888763   468999999888653 4455666778899999 565


Q ss_pred             EE-EEEeCCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeecccccccE
Q 010470          324 HV-VSAAYDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAV  397 (510)
Q Consensus       324 ~l-~s~~~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i  397 (510)
                      .| ++.+.++.  |++||+.++................|+|||+.|+..+. +|  .|+++|+..+... .+.... ..+
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~-~~~  336 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGG-GRY  336 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCC-Ccc
Confidence            54 56665654  77889988766443333334667899999998886653 33  6888898665543 333322 456


Q ss_pred             EEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC------CeEEEEe
Q 010470          398 TSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD------GSVYIWS  468 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d------g~i~iwd  468 (510)
                      ....|+|+|+.|+..+.+   ..|.+||+.++.. ..+... ..    ...+.|+|||+.|+..+.+      ..++++|
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~-~~----~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d  410 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG-FL----VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD  410 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC-CC----CCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence            778899999999887654   3688888865443 222221 11    2337899999998765542      3588888


Q ss_pred             CCCcceeecccccCcCEEEEEEeCC
Q 010470          469 ISKADIVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       469 ~~~~~~~~~~~~~~~~v~~~~~~~~  493 (510)
                      +..+.. ..+. ..+.+...+|+|-
T Consensus       411 l~g~~~-~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        411 LTGRNE-REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             CCCCce-EEcc-CCCCccCcccCCC
Confidence            876554 3444 2445677788873

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=1.6e-15  Score=129.11  Aligned_cols=232  Identities=15%  Similarity=0.257  Sum_probs=165.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEE-EEEeCC------CcEEEEECCC
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV-VSAAYD------RTLKVWDLHK  341 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~s~~~d------g~i~iwd~~~  341 (510)
                      ...+++|+.|..-++++..+| .+||+.+.-+....-..+.+.+.-+...- ..+++ ++||.+      +.|.|||-..
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEEeccc
Confidence            345589999988888887766 89999876333222222222221111111 23343 344433      5799999888


Q ss_pred             CeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECC-CCceeeeecccc-cccEEEEEEcCCCCEEEEE-ecCCcE
Q 010470          342 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKLLSEVAAHS-LAAVTSISLSRSGNIILTS-GRDNLH  418 (510)
Q Consensus       342 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~-~~d~~i  418 (510)
                      .+++..+...++|.++.+.++  .|++.- .+.|+||... +.+.+..+.... .....+++-..+..+|+.- -.-|.|
T Consensus        85 ~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   85 ERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             CcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            999999999999999999754  455554 4689999987 556666665432 2345445444444555553 355899


Q ss_pred             EEEEcCCcee--eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe-EEEEeCCCcceeecccc--cCcCEEEEEEeCC
Q 010470          419 NLFDIRSLEV--CGSLRATGNRVASNWSRSCISPDESYVAAGSADGS-VYIWSISKADIVRTLKE--HTAPVLSCSWSGL  493 (510)
Q Consensus       419 ~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~  493 (510)
                      .|-|+...+.  ...+..|...+.+    ++++.+|..+|++|..|+ |+|||..+|+.+..++.  ....|.+++|||+
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iac----v~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~  237 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIAC----VALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN  237 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeE----EEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence            9999986554  4666677766654    999999999999999997 79999999999999865  3457999999999


Q ss_pred             CCcEEEeeCCCeEEEc
Q 010470          494 GKPLASADKNGVVCVW  509 (510)
Q Consensus       494 ~~~l~s~~~dg~i~iw  509 (510)
                      +.+|+++|+-|+|.||
T Consensus       238 ~s~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  238 SSWLAVSSDKGTLHIF  253 (346)
T ss_pred             ccEEEEEcCCCeEEEE
Confidence            9999999999999997

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.73  E-value=4e-17  Score=137.60  Aligned_cols=157  Identities=37%  Similarity=0.470  Sum_probs=77.3

Q ss_pred             HHHHHHHHhhhhhhhcccchhhHhhcCccc-----------------------------------cccccHHHHHHHHHH
Q 010470           12 KHALKALRKRHLVEEGAHAPAIIALSRPII-----------------------------------SQGSEWKEKADNLET   56 (510)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~l~~   56 (510)
                      .+++.+|+.||+.| .+|.++|.+|++...                                   .....+++++..++.
T Consensus         3 ~~il~~L~~Rd~~e-~~~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~   81 (194)
T PF08614_consen    3 DEILAQLRERDRRE-KAFAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQE   81 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            57899999999999 999999999988771                                   112256788999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           57 ELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLE  136 (510)
Q Consensus        57 el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~  136 (510)
                      ||+++|+.++++.++|......+..++..+.+....|..++.++..++.++..+..++++..+.++.+++|+..++.++.
T Consensus        82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~  161 (194)
T PF08614_consen   82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN  161 (194)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010470          137 EMTMKAKNAEAENKMLVDRWMLQKMQDAERLNE  169 (510)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (510)
                      .++.++..++.+|..|++|||..++++++.||+
T Consensus       162 ~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~mN~  194 (194)
T PF08614_consen  162 MLEEKLRKLEEENRELVERWMQRKAQEAERMNE  194 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999998874

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.8e-15  Score=146.12  Aligned_cols=234  Identities=18%  Similarity=0.223  Sum_probs=155.2

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR  323 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  323 (510)
                      ..|.+||.. +.....+..+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+.+..|+| ++.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~  252 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGR  252 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCC
Confidence            467778874 44445556677889999999999999887743   469999999887543 333445567889999 665


Q ss_pred             EE-EEEeCCCcEEEE--ECCCCeEeeeeeec-CceeEEEEcCCCCEEEEec-CCCcEEEE--ECCCCceeeeeccccccc
Q 010470          324 HV-VSAAYDRTLKVW--DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGH-IDGNLRLW--DIQTGKLLSEVAAHSLAA  396 (510)
Q Consensus       324 ~l-~s~~~dg~i~iw--d~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~  396 (510)
                      .| ++.+.+|...+|  |+.++.. ..+..+ .......|+|||+.|+..+ .+|...+|  ++.++... .+.... ..
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g-~~  329 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTG-SY  329 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCC-CC
Confidence            55 466777775555  5554443 333332 3356788999999887654 34555555  44444432 222222 33


Q ss_pred             EEEEEEcCCCCEEEEEecCC---cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC---eEEEEeCC
Q 010470          397 VTSISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG---SVYIWSIS  470 (510)
Q Consensus       397 i~~i~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~  470 (510)
                      .....|+|+|++|+..+.++   .|.+||+.++........ . ..    ....|+|||++|+..+.++   .+++.++ 
T Consensus       330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~-~~----~~p~~spdg~~l~~~~~~~g~~~l~~~~~-  402 (427)
T PRK02889        330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-T-RD----ESPSFAPNGRYILYATQQGGRSVLAAVSS-  402 (427)
T ss_pred             cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-C-Cc----cCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence            44678999999998877654   699999988765433221 1 11    2368999999988877543   3666666 


Q ss_pred             CcceeecccccCcCEEEEEEeCC
Q 010470          471 KADIVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~  493 (510)
                      ++.....+..+.+.+...+|+|-
T Consensus       403 ~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        403 DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCceEEeecCCCCCCCCccCCC
Confidence            46666666667777888899874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=6.6e-16  Score=150.71  Aligned_cols=247  Identities=19%  Similarity=0.307  Sum_probs=176.2

Q ss_pred             ccceEEEEEec--CCCEEEEeeCCCeEEEEeCC-CC----cceeccc-------ccccceeEEEEecCCCEEEEEeCCCe
Q 010470          225 EGGCASILFEY--NSARLISGGQDKSIKLWDTN-TG----SLSSTLY-------GCLGSVLDLAITHDNRSVIAASSSNN  290 (510)
Q Consensus       225 ~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~-~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~  290 (510)
                      ...|+.+.+-.  |..++++|+.||.|+||+-- ++    +.+....       +..+.-.-+.|.....+|++++.-..
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence            34688888865  45689999999999999742 22    2222111       11111134677777778888887889


Q ss_pred             EEEEEcCCCCeeEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe---EeeeeeecC---ceeEEEEcCCC
Q 010470          291 LYVWDVNSGRVRHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY---CVNTIIFHS---NCNALAFSMDG  363 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~---~i~~i~~~~~~  363 (510)
                      |+|||.....+...+.. ...-|+++.-+...++.+++|..||.|++||.+...   .+.....|.   +|..+.+.+.|
T Consensus      1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred             EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence            99999988777776653 445677777766678999999999999999987543   344444442   37888888866


Q ss_pred             CE-EEEecCCCcEEEEECCCCceee--eecccc--cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC--
Q 010470          364 QT-IFSGHIDGNLRLWDIQTGKLLS--EVAAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG--  436 (510)
Q Consensus       364 ~~-l~~~~~dg~i~i~d~~~~~~~~--~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--  436 (510)
                      -- |++|+.+|.|++||++......  .+..+.  ++..+++..++....+++|+. +.|+||++... .+..++...  
T Consensus      1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGF 1346 (1387)
T ss_pred             CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCccc
Confidence            54 9999999999999999852222  222221  235999999999999999998 99999998643 233333222  


Q ss_pred             -CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470          437 -NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       437 -~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  473 (510)
                       +.-....++++|+|.--.+++|+.|.+|.||......
T Consensus      1347 ~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence             2222345779999999999999999999999876543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.72  E-value=9.8e-15  Score=136.34  Aligned_cols=268  Identities=15%  Similarity=0.064  Sum_probs=176.8

Q ss_pred             EEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEec
Q 010470          240 LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSK  319 (510)
Q Consensus       240 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  319 (510)
                      +++-..+|.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++... ....++++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~   87 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP   87 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence            345667899999999999999988765554456789999999999999999999999999999998754 4567899999


Q ss_pred             CCCCEEEEE-eCCCcEEEEECCCCeEeeeeeec--------CceeEEEEcCCCCEEE-EecCCCcEEEEECCCCceeeee
Q 010470          320 ISSRHVVSA-AYDRTLKVWDLHKGYCVNTIIFH--------SNCNALAFSMDGQTIF-SGHIDGNLRLWDIQTGKLLSEV  389 (510)
Q Consensus       320 ~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~  389 (510)
                       ++++++++ ...+.+.++|..+.+.++.+...        +.+..+..+|....++ +.-..+.|.+.|....+.+..-
T Consensus        88 -DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   88 -DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             -CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence             77777655 46899999999999998887643        2466787888888555 4455688999998776554332


Q ss_pred             cccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeE-------EE--cCCCCEEEEEc
Q 010470          390 AAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS-------CI--SPDESYVAAGS  459 (510)
Q Consensus       390 ~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~--s~~~~~l~~~~  459 (510)
                      ............|+|++++++++ ..++.|.++|..+++.+..+.....+.......+       .|  ...+...++.-
T Consensus       167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i  246 (369)
T PF02239_consen  167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI  246 (369)
T ss_dssp             EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence            22222678889999999987664 5667999999999888776654333322211111       12  12222322222


Q ss_pred             CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe----eCCCeEEEcC
Q 010470          460 ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA----DKNGVVCVWT  510 (510)
Q Consensus       460 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~----~~dg~i~iwd  510 (510)
                      ..+.+.+|+..+.+.+..+....++ ..+..+|+++++.+.    ...+.|.++|
T Consensus       247 g~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD  300 (369)
T PF02239_consen  247 GTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID  300 (369)
T ss_dssp             E--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred             cCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence            2345667888899999999877666 788999999999887    4447777765

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.72  E-value=1.7e-15  Score=130.09  Aligned_cols=280  Identities=15%  Similarity=0.269  Sum_probs=189.1

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-----ceecccccc------------cceeEEEEecCCC--EEEEEe
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGS-----LSSTLYGCL------------GSVLDLAITHDNR--SVIAAS  286 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~~  286 (510)
                      .-|.+|.|+..|.+|+||..+|.|.+|.-....     ....+..|.            ..|..+.|.++++  .++..+
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            458999999999999999999999999754322     223333342            3678899988764  577888


Q ss_pred             CCCeEEEEEcCCCC-----------------------------------eeEee-cCCCCceEEEEEecCCCCEEEEEeC
Q 010470          287 SSNNLYVWDVNSGR-----------------------------------VRHTL-TGHTDKVCAVDVSKISSRHVVSAAY  330 (510)
Q Consensus       287 ~d~~i~iwd~~~~~-----------------------------------~~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~  330 (510)
                      .|.+|++|.+....                                   +.+.+ ..|+-.|.++.++. +...++++. 
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-  183 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSAD-  183 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeecc-
Confidence            99999999875321                                   01111 35778889999987 777777776 


Q ss_pred             CCcEEEEECCCC-eEeeee--eec------CceeEEEEcC-CCCEEEEecCCCcEEEEECCCCcee----eee-------
Q 010470          331 DRTLKVWDLHKG-YCVNTI--IFH------SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLL----SEV-------  389 (510)
Q Consensus       331 dg~i~iwd~~~~-~~~~~~--~~~------~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~----~~~-------  389 (510)
                      |-.|.+|++.-. +....+  ...      .-|++..|+| ..+.++-.+..|+|++.|++....-    ..+       
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            889999998632 222221  221      1278999999 4567777888999999999843211    011       


Q ss_pred             ----cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC-CceeeeEeecCCCee-----------ecCceeEEEcCCCC
Q 010470          390 ----AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR-SLEVCGSLRATGNRV-----------ASNWSRSCISPDES  453 (510)
Q Consensus       390 ----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~~~  453 (510)
                          ...-...|..+.|+++|+|+++-+. -+|++||+. ..+++.++..|....           ...-..++|+.++.
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~  342 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS  342 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence                1111256889999999999987543 589999994 566666665543211           11223478999999


Q ss_pred             EEEEEcCCCeEEEEeCCCccee--------------ec------cc-c-c------------CcCEEEEEEeCCCCcEEE
Q 010470          454 YVAAGSADGSVYIWSISKADIV--------------RT------LK-E-H------------TAPVLSCSWSGLGKPLAS  499 (510)
Q Consensus       454 ~l~~~~~dg~i~iwd~~~~~~~--------------~~------~~-~-~------------~~~v~~~~~~~~~~~l~s  499 (510)
                      ++++|+.+..+++|++..|...              ..      .. + +            ...+...+|+|..+.++.
T Consensus       343 ~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~  422 (433)
T KOG1354|consen  343 YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAV  422 (433)
T ss_pred             eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeee
Confidence            9999999999999996543210              00      00 0 0            112456689999988888


Q ss_pred             eeCCCeEEEc
Q 010470          500 ADKNGVVCVW  509 (510)
Q Consensus       500 ~~~dg~i~iw  509 (510)
                      +..+ .+++|
T Consensus       423 aatn-nlyif  431 (433)
T KOG1354|consen  423 AATN-NLYIF  431 (433)
T ss_pred             eecC-ceEEe
Confidence            7665 45554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.72  E-value=6.8e-15  Score=125.71  Aligned_cols=272  Identities=15%  Similarity=0.205  Sum_probs=191.6

Q ss_pred             cceEEEEEecCCCEEEE-eeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEE-EEeCCCeEEEEEcCCCCeeE
Q 010470          226 GGCASILFEYNSARLIS-GGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI-AASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~  303 (510)
                      ..|.-+.|..|.-++++ ...++.|.+|++...+-...+.....++.+++|+|||+.++ +...+-.|.+|.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            46888899988877655 45688999999988887788888889999999999996555 55578899999998766443


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeC------------------------------------CCcEEEEECCCCeEeee
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAY------------------------------------DRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~------------------------------------dg~i~iwd~~~~~~~~~  347 (510)
                       ++-....+..++|+| ++.+.+.++.                                    +..+.+||.--...+..
T Consensus       129 -~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  129 -LPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             -ecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence             232344567788888 6666655432                                    12345555433333334


Q ss_pred             eeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee-----------------------------------------
Q 010470          348 IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL-----------------------------------------  386 (510)
Q Consensus       348 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------------------  386 (510)
                      +...-++..+.|+|.++++++|+.|+.+++.+--+-++.                                         
T Consensus       207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a  286 (447)
T KOG4497|consen  207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA  286 (447)
T ss_pred             eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence            444456889999999999999999999887643211100                                         


Q ss_pred             -------------------eeec-----ccccccEEEEEEcCCCCEEEEEecC--CcEEEEEcCCceeeeEeecCCCeee
Q 010470          387 -------------------SEVA-----AHSLAAVTSISLSRSGNIILTSGRD--NLHNLFDIRSLEVCGSLRATGNRVA  440 (510)
Q Consensus       387 -------------------~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~  440 (510)
                                         ..++     .....++.-++|++|..++++-.+.  +.+.+||+++.+....+... .+  
T Consensus       287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk-~p--  363 (447)
T KOG4497|consen  287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK-HP--  363 (447)
T ss_pred             CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhc-cc--
Confidence                               0000     0112356678999999998886544  67999999987664444322 22  


Q ss_pred             cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470          441 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGV  505 (510)
Q Consensus       441 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  505 (510)
                        +....|+|....|+.+.....+++|.......+.. +...-.|..+.|.-+|..++.++.|..
T Consensus       364 --iraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  364 --IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             --eeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence              33378999988888888888899999765444433 334467999999999999999998854

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.9e-16  Score=143.96  Aligned_cols=217  Identities=22%  Similarity=0.352  Sum_probs=159.2

Q ss_pred             ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-cCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEE
Q 010470          261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd  338 (510)
                      ..+.||.+.|.++.|+.+|.+|++|+.|-.+.|||.-..++++.+ ++|...|.++.|.|. ++.++++|..|..|++||
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            568899999999999999999999999999999999888888777 589999999999996 456788999999999999


Q ss_pred             CCCC----------eEeeeeeec-CceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeee-------ec--ccccccE
Q 010470          339 LHKG----------YCVNTIIFH-SNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSE-------VA--AHSLAAV  397 (510)
Q Consensus       339 ~~~~----------~~~~~~~~~-~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~-------~~--~~~~~~i  397 (510)
                      +...          .....+..+ ..|..++..|++ +.+.+++.||+|+-||++....-..       +.  ....-..
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            9742          122233333 347888889988 7888999999999999987432111       11  0111357


Q ss_pred             EEEEEcCC-CCEEEEEecCCcEEEEEcCCc--------e----------eeeEeec-CC----C---eeecCceeEEEcC
Q 010470          398 TSISLSRS-GNIILTSGRDNLHNLFDIRSL--------E----------VCGSLRA-TG----N---RVASNWSRSCISP  450 (510)
Q Consensus       398 ~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~--------~----------~~~~~~~-~~----~---~~~~~~~~~~~s~  450 (510)
                      .++.++|. ..+|++|+.|-..++||.+..        .          .+..+.. +.    .   ......+.+.|+|
T Consensus       204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp  283 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP  283 (758)
T ss_pred             eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence            78999996 458899999999999995421        1          0111111 11    0   0011134578999


Q ss_pred             CCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470          451 DESYVAAGSADGSVYIWSISKADIVRT  477 (510)
Q Consensus       451 ~~~~l~~~~~dg~i~iwd~~~~~~~~~  477 (510)
                      +|.-|.+.-....|++||+..++....
T Consensus       284 NGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  284 NGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             CCcEEEEeeCCeEEEEEeecCCCCcee
Confidence            998877766666799999988765433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.1e-15  Score=129.43  Aligned_cols=228  Identities=16%  Similarity=0.267  Sum_probs=159.2

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC----
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG----  342 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~----  342 (510)
                      ..+..++|++.-..++++..|..|++|+-.+ +....++. ....|+|++|-|.....|+.|+. +.|.+|.....    
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence            4567789998777788999999999999765 44444442 45679999999988888888884 56999976421    


Q ss_pred             eE----------eeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE
Q 010470          343 YC----------VNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT  411 (510)
Q Consensus       343 ~~----------~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  411 (510)
                      ..          +....++..|+++.|.+||..+++++ .+..|.|||..++..+....... +.++-+.|||||.+|++
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl-gg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL-GGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC-CceeeEEEcCCCCEEEE
Confidence            11          11223345699999999999999876 46789999999887665443332 78999999999999999


Q ss_pred             EecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc---------------ee
Q 010470          412 SGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD---------------IV  475 (510)
Q Consensus       412 ~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------------~~  475 (510)
                      +.-|+..++|.... .....-.-+.+ .+.    ..+|+|+|.+|...+. |.-.+|.+....               ++
T Consensus       256 At~davfrlw~e~q~wt~erw~lgsg-rvq----tacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli  329 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILGSG-RVQ----TACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI  329 (445)
T ss_pred             ecccceeeeehhcccceecceeccCC-cee----eeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence            99999999995543 33222222222 333    3789999998765543 233444432110               11


Q ss_pred             eccc------c---cCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          476 RTLK------E---HTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       476 ~~~~------~---~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                      ..+.      +   ..+++.+++|.|.|.+|++.-..+
T Consensus       330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence            1111      1   246789999999999999865543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.71  E-value=2.7e-16  Score=130.14  Aligned_cols=225  Identities=21%  Similarity=0.284  Sum_probs=165.5

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeecc-ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee----
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKIN-AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS----  261 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----  261 (510)
                      +.+..+...|.+..|.....         .....++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++.-+..+.    
T Consensus        26 ~rL~sg~~~G~V~~w~lqt~---------r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si   95 (323)
T KOG0322|consen   26 ERLMSGLSVGIVKMWVLQTE---------RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSI   95 (323)
T ss_pred             hhhhcccccceEEEEEeecC---------ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeee
Confidence            34667788899999985442         2333455 45668888888886 578888899999999886422110    


Q ss_pred             ----------ccc---------------------------------------ccccceeEEEEec-CCC--EEEEEeCCC
Q 010470          262 ----------TLY---------------------------------------GCLGSVLDLAITH-DNR--SVIAASSSN  289 (510)
Q Consensus       262 ----------~~~---------------------------------------~~~~~v~~~~~~~-~~~--~l~~~~~d~  289 (510)
                                .+.                                       +..+.+.+..+.. +++  ++++|..+|
T Consensus        96 ~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg  175 (323)
T KOG0322|consen   96 VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG  175 (323)
T ss_pred             eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC
Confidence                      000                                       0012333433321 222  456677899


Q ss_pred             eEEEEEcCCCC----------eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEe--eeee-ecCce
Q 010470          290 NLYVWDVNSGR----------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG--YCV--NTII-FHSNC  354 (510)
Q Consensus       290 ~i~iwd~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~--~~~~-~~~~i  354 (510)
                      .|.+||+.++.          .......|..+|.++.+.+ .-..=++|+.+..+..|++...  .+.  ..+. .+..+
T Consensus       176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv  254 (323)
T KOG0322|consen  176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGV  254 (323)
T ss_pred             eEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCc
Confidence            99999999873          3344557999999999987 4555677888888999988643  211  1111 23458


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      ..+.+-||++.+++++.||.|+||..++..++..+..|. ..|++++|+|+..++++++.|++|.+|++
T Consensus       255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-agvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  255 SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-AGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-cceeEEEeCCCCchhhhccCCceEEeeec
Confidence            899999999999999999999999999999999999998 99999999999999999999999999986

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.70  E-value=4.5e-15  Score=127.62  Aligned_cols=248  Identities=15%  Similarity=0.291  Sum_probs=190.0

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEe-CCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEE
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLY  292 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~  292 (510)
                      +.....++||...|+....-|...-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|++|-.+|++.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            346678899999999999999888999999999999994 45555433332 3467889999999999999999999999


Q ss_pred             EEEcC----CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE
Q 010470          293 VWDVN----SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS  368 (510)
Q Consensus       293 iwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  368 (510)
                      -+.+.    .....+.+..|...|..+-|+- ....+++.+.|..+.-.-.+.+..+..+......+++.+.-.  +.+.
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fv  170 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFV  170 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEe
Confidence            88764    3345667778999999999987 788999999998887776777766666555544444444333  6667


Q ss_pred             ecCCCcEEEEEC--CCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee-eeEeecCCCeeecCcee
Q 010470          369 GHIDGNLRLWDI--QTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSR  445 (510)
Q Consensus       369 ~~~dg~i~i~d~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~  445 (510)
                      |...|.|....+  ..-.++.++.++. +.+.+++|.|....+++|..|..+.+||+...+- ...+.++...+..    
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~-~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~----  245 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHT-GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA----  245 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcc-cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh----
Confidence            877787766554  3456677777777 9999999999999999999999999999975433 2333444444433    


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          446 SCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       446 ~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      ++..+--+.+.+++.||.|.+|+++
T Consensus       246 l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  246 LSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhhhhhheeeeeccCCCeEEEEecc
Confidence            4555666788899999999999986

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=1.2e-14  Score=132.96  Aligned_cols=269  Identities=13%  Similarity=0.201  Sum_probs=172.0

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-----C-----CCeEEEEE
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-----S-----SNNLYVWD  295 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~-----d~~i~iwd  295 (510)
                      .+++..++|++|++++.+. +..++|++..++..+.+....  .+.++.|+|-|.+|.+--     .     .-.+.+|+
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            3477888999998887765 668999999888644443332  789999999999887631     1     23578999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC--EEEE-----
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ--TIFS-----  368 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~-----  368 (510)
                      +.++.....+......-++..|++ +.. +++--..+.+.+|++.+.+.+..-.....++.+.++|.+.  .+++     
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~  189 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK  189 (566)
T ss_pred             eccceehhheehhhhcCccccccc-chh-hhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence            998655555543333336777776 332 2222234677777776543332222233455555554311  1111     


Q ss_pred             ecCCCc---------------------------------------------------------EEEEECCCCceeeeecc
Q 010470          369 GHIDGN---------------------------------------------------------LRLWDIQTGKLLSEVAA  391 (510)
Q Consensus       369 ~~~dg~---------------------------------------------------------i~i~d~~~~~~~~~~~~  391 (510)
                      ++.-+.                                                         ++++++.......  ..
T Consensus       190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V--~L  267 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV--PL  267 (566)
T ss_pred             CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE--ec
Confidence            122223                                                         4444433112222  22


Q ss_pred             cccccEEEEEEcCCCCEEEE--EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC---CCeEEE
Q 010470          392 HSLAAVTSISLSRSGNIILT--SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA---DGSVYI  466 (510)
Q Consensus       392 ~~~~~i~~i~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~i  466 (510)
                      ...++|.++.|+|+|+-+++  |-.-..+.|||++..- +..+.  .++-    +++-|+|.|++|+.++.   -|.|-|
T Consensus       268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~df~--egpR----N~~~fnp~g~ii~lAGFGNL~G~mEv  340 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VFDFP--EGPR----NTAFFNPHGNIILLAGFGNLPGDMEV  340 (566)
T ss_pred             CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eEeCC--CCCc----cceEECCCCCEEEEeecCCCCCceEE
Confidence            22389999999999986655  4456789999997543 33332  1222    23789999999887765   489999


Q ss_pred             EeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC------CCeEEEcC
Q 010470          467 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK------NGVVCVWT  510 (510)
Q Consensus       467 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~iwd  510 (510)
                      ||+.+.+.+..+....  -+-+.|+|||.+|+|+..      |+.++||+
T Consensus       341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence            9999998888887544  356799999999998875      67788884

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.3e-14  Score=138.18  Aligned_cols=221  Identities=16%  Similarity=0.151  Sum_probs=146.3

Q ss_pred             eeccccccceEEEEEecCCCEEEEee---CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCC--eEE
Q 010470          219 HKINAHEGGCASILFEYNSARLISGG---QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSN--NLY  292 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~  292 (510)
                      ..+..+...+.+.+|||||+.|+..+   .+..|.+|++.+++... +....+.+..+.|+|||+.|+.. +.+|  .|+
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence            34455667899999999999988654   24579999998875422 22223344578999999988865 3344  599


Q ss_pred             EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC-CC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEe
Q 010470          293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-DR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSG  369 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  369 (510)
                      +||+.+++.... ..+...+....|+| +++.|+..+. ++  .|.++|+.++................|+|||++|+..
T Consensus       271 ~~d~~tg~~~~l-t~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~  348 (429)
T PRK03629        271 VMDLASGQIRQV-TDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV  348 (429)
T ss_pred             EEECCCCCEEEc-cCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence            999988776543 33445678899999 7777766554 34  4555577766543332223345678999999998865


Q ss_pred             cCC---CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCc---EEEEEcCCceeeeEeecCCCeeecCc
Q 010470          370 HID---GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL---HNLFDIRSLEVCGSLRATGNRVASNW  443 (510)
Q Consensus       370 ~~d---g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~---i~i~d~~~~~~~~~~~~~~~~~~~~~  443 (510)
                      +.+   ..|++||+.++... .+...  .......|+|||+.|+.++.++.   +.++++. +.....+..+...+..  
T Consensus       349 ~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~--  422 (429)
T PRK03629        349 SSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKF--  422 (429)
T ss_pred             EccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCC--
Confidence            433   35888999877643 33322  23446789999999999887764   6667764 4334444443333322  


Q ss_pred             eeEEEcC
Q 010470          444 SRSCISP  450 (510)
Q Consensus       444 ~~~~~s~  450 (510)
                        .+|+|
T Consensus       423 --p~Wsp  427 (429)
T PRK03629        423 --PAWSP  427 (429)
T ss_pred             --cccCC
Confidence              55665

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.68  E-value=4.1e-13  Score=125.95  Aligned_cols=269  Identities=17%  Similarity=0.248  Sum_probs=174.7

Q ss_pred             EEEeeCC----CeEEEEeC--CCCcce--ecccccccceeEEEEecCCCEEEEEeC----CCeEEEEEcCCC--C--eeE
Q 010470          240 LISGGQD----KSIKLWDT--NTGSLS--STLYGCLGSVLDLAITHDNRSVIAASS----SNNLYVWDVNSG--R--VRH  303 (510)
Q Consensus       240 l~s~~~d----g~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~--~--~~~  303 (510)
                      +++|+..    +.|.+|++  .+++..  .. .........++++|++++|+++..    ++.|..|.+...  .  .+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            3445544    67888877  444432  22 223456677999999999999986    569999998764  3  333


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCC-CeEeee---ee-----------ecCceeEEEEcCCCCEEE
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHK-GYCVNT---II-----------FHSNCNALAFSMDGQTIF  367 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~---~~-----------~~~~i~~i~~~~~~~~l~  367 (510)
                      .........+.++++| ++.+++++. .+|.|.++++.. |.....   +.           ....+.++.++|+|++++
T Consensus        81 ~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~  159 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY  159 (345)
T ss_dssp             EEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred             eeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence            3443455667899999 666666665 589999999986 443322   21           113378999999999888


Q ss_pred             Eec-CCCcEEEEECCCCc--e--eeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcC--Cce--eeeEeecC--
Q 010470          368 SGH-IDGNLRLWDIQTGK--L--LSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIR--SLE--VCGSLRAT--  435 (510)
Q Consensus       368 ~~~-~dg~i~i~d~~~~~--~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~--~~~--~~~~~~~~--  435 (510)
                      +.. ....|.+|++....  .  ...+........+.+.|+|+++++++.+ .++.|.+|++.  ++.  ....+...  
T Consensus       160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred             EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence            753 34579999987654  2  2334444447899999999999886655 56789999988  332  23333221  


Q ss_pred             CCeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCC--cc--eeecccccCcCEEEEEEeCCCCcEEEee-CCCeEEEc
Q 010470          436 GNRVASNWSRSCISPDESYVAAGS-ADGSVYIWSISK--AD--IVRTLKEHTAPVLSCSWSGLGKPLASAD-KNGVVCVW  509 (510)
Q Consensus       436 ~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iw  509 (510)
                      ..........+.++|||++|+++. ..++|.+|++..  +.  .+..+.........++++|+|++|++++ .++.|.+|
T Consensus       240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence            111111345688999999988765 467899999842  33  2333443344589999999999888776 56678877


Q ss_pred             C
Q 010470          510 T  510 (510)
Q Consensus       510 d  510 (510)
                      +
T Consensus       320 ~  320 (345)
T PF10282_consen  320 D  320 (345)
T ss_dssp             E
T ss_pred             E
Confidence            3

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=7.7e-15  Score=128.33  Aligned_cols=238  Identities=14%  Similarity=0.202  Sum_probs=180.1

Q ss_pred             cccceeEEEEecCCC--EEEEEeCCCeEEEEEcCCCCeeEe------ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470          266 CLGSVLDLAITHDNR--SVIAASSSNNLYVWDVNSGRVRHT------LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW  337 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~------~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw  337 (510)
                      -...|+.++|..++.  .++..+.+..+..+.+....+...      ......+|.++...   +..|++|-.+|.+.+|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEE
Confidence            345677788865554  344444666777777665554333      23445666666553   4678888889999999


Q ss_pred             ECCCC----eEeeeeeecCceeEEEEcCCCCE-EEEecCC--CcEEEEECCCCceeeeecccc--------cccEEEEEE
Q 010470          338 DLHKG----YCVNTIIFHSNCNALAFSMDGQT-IFSGHID--GNLRLWDIQTGKLLSEVAAHS--------LAAVTSISL  402 (510)
Q Consensus       338 d~~~~----~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d--g~i~i~d~~~~~~~~~~~~~~--------~~~i~~i~~  402 (510)
                      ....+    ..+..+..+.++..+.-++...+ +++|+..  ..+.+||+...+.+..-....        .-.++++.|
T Consensus       131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            98743    24445555666777777775554 4558887  789999998886665544322        135788899


Q ss_pred             cCC--CCEEEEEecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec-c
Q 010470          403 SRS--GNIILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-L  478 (510)
Q Consensus       403 ~~~--~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~  478 (510)
                      -+.  ...|++++.-+.+++||.+. .+++..|....+++.    ++...|+|++|++|..-|.+..||++.++.... +
T Consensus       211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is----~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~  286 (412)
T KOG3881|consen  211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS----STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL  286 (412)
T ss_pred             cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce----eeeecCCCcEEEEecccchhheecccCceeecccc
Confidence            887  88999999999999999986 455666666555544    488999999999999999999999999998877 8


Q ss_pred             cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          479 KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       479 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++..++|.++..+|.+++|++||-|..|+|+|
T Consensus       287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             CCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence            88999999999999999999999999999987

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.9e-14  Score=130.64  Aligned_cols=243  Identities=13%  Similarity=0.202  Sum_probs=181.2

Q ss_pred             cccccc--ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          221 INAHEG--GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       221 ~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      |.-|..  .|.-.-++.|-..++.-..|.+|.+...........++   ..-.+++++.-..-|++++....|+-++++.
T Consensus        88 FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEq  164 (703)
T KOG2321|consen   88 FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ  164 (703)
T ss_pred             eeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEccc
Confidence            444532  45555556665666666667777765433211111111   1224566665555567777777899999999


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc------------eeEEEEcCCCCEE
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN------------CNALAFSMDGQTI  366 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------i~~i~~~~~~~~l  366 (510)
                      |..+..+....+.++++.+++ ...+|++|+.+|.|-.||.++...+.++.....            |+++.|+.+|-.+
T Consensus       165 GrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~  243 (703)
T KOG2321|consen  165 GRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHV  243 (703)
T ss_pred             cccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeE
Confidence            999999988889999999999 788999999999999999998777666654332            8999999899999


Q ss_pred             EEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470          367 FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR  445 (510)
Q Consensus       367 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  445 (510)
                      ++|+.+|.+.|||++..+++..-......+|..+.|.+.+. --+++.....++|||-.+++....+.....     +..
T Consensus       244 aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~-----lND  318 (703)
T KOG2321|consen  244 AVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD-----LND  318 (703)
T ss_pred             EeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCC-----cCc
Confidence            99999999999999999988776666567999999987632 233444567899999999988776654433     444


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470          446 SCISPDESYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~  472 (510)
                      +|+-|++.+++++..++.+..|-+..-
T Consensus       319 ~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  319 FCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             eeeecCCceEEEecCCCcceeEEcccc
Confidence            899999999999999998888876653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.8e-14  Score=138.27  Aligned_cols=204  Identities=16%  Similarity=0.150  Sum_probs=141.4

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCC---CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEE-EeCCC--e
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIA-ASSSN--N  290 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~  290 (510)
                      ....+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.++.... +....+...++.|+|||+.++. .+.+|  .
T Consensus       195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~  273 (433)
T PRK04922        195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE  273 (433)
T ss_pred             CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence            445566777889999999999999887643   469999998876532 3333445567899999998764 44554  6


Q ss_pred             EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEe-CCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE
Q 010470          291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF  367 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  367 (510)
                      |++||+.+++.. .+..+........|+| ++..++.++ .+|.  |+++|+.++...............+|+|+|++|+
T Consensus       274 Iy~~d~~~g~~~-~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        274 IYVMDLGSRQLT-RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA  351 (433)
T ss_pred             EEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence            999999887654 4555555567789999 677666555 3444  7777877765433322223345789999999998


Q ss_pred             EecCCC---cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCCc
Q 010470          368 SGHIDG---NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRSL  426 (510)
Q Consensus       368 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~  426 (510)
                      ..+.++   .|.+||+.++... .+...  .......|+|||++++..+.+   +.+.++++...
T Consensus       352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLSTGSVR-TLTPG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEECCCCceeEEEEECCCCCeE-ECCCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            754333   5999999877654 33322  234567899999988776653   35777777543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=8.3e-14  Score=135.25  Aligned_cols=203  Identities=20%  Similarity=0.191  Sum_probs=140.2

Q ss_pred             CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE
Q 010470          289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT  365 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~  365 (510)
                      ..|.+||.. +.....+..|...+.+..|+| +++.|+..+.   +..|.+||+.++...........+....|+|||+.
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence            378899875 445556677888999999999 6777776653   46899999998876544334455678899999998


Q ss_pred             EE-EecCCCc--EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec-CC--cEEEEEcCCceeeeEeecCCCee
Q 010470          366 IF-SGHIDGN--LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DN--LHNLFDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       366 l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~  439 (510)
                      |+ +.+.+|.  |++||+.++... .+..+. .......|+|||+.|+..+. +|  .|+++|+.++....... .... 
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-~~~~-  335 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF-GGGR-  335 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceE-EccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec-CCCc-
Confidence            76 4455554  888898877653 344333 45677899999998887664 33  68888887665433322 2211 


Q ss_pred             ecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470          440 ASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  502 (510)
                         .....|+|||++|+..+.+   ..|.+||+.++.. ..+.. ...+..+.|+|||+.|+..+.
T Consensus       336 ---~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        336 ---YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ---ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEc
Confidence               2236799999999876543   3688889765543 33322 234678899999998876544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.65  E-value=9e-14  Score=135.26  Aligned_cols=232  Identities=18%  Similarity=0.181  Sum_probs=154.7

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR  323 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  323 (510)
                      ..|.++|..... ...+..+...+....|+|||++|+.++.+   ..|++||+.+++... +..+...+.++.|+| +++
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~  246 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGS  246 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCC
Confidence            468888876443 34555666778899999999999987754   489999998876543 333556677789999 565


Q ss_pred             EE-EEEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeecccccccE
Q 010470          324 HV-VSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAV  397 (510)
Q Consensus       324 ~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i  397 (510)
                      .| ++.+.++  .|++||+.++................|+|+|+.|+..+. +|  .|+++|+.+++.. .+.... ..+
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~-~~~  324 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRG-GYN  324 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCC-CCc
Confidence            55 4555444  589999987765443333333456789999998876543 33  5888898776643 333232 556


Q ss_pred             EEEEEcCCCCEEEEEecCC---cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC---eEEEEeCCC
Q 010470          398 TSISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG---SVYIWSISK  471 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~  471 (510)
                      ..+.|+|+|++++.++.++   .|.+||+.++.... +..... .    ....|+|+|++|+..+.++   .+++.+.. 
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~-~----~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-  397 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGL-D----ESPSFAPNGRMILYATTRGGRGVLGLVSTD-  397 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCC-C----CCceECCCCCEEEEEEeCCCcEEEEEEECC-
Confidence            7889999999999888776   78899988754422 222111 1    1257999999988877654   45565643 


Q ss_pred             cceeecccccCcCEEEEEE
Q 010470          472 ADIVRTLKEHTAPVLSCSW  490 (510)
Q Consensus       472 ~~~~~~~~~~~~~v~~~~~  490 (510)
                      +.....+..+.+.+..++|
T Consensus       398 g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       398 GRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             CceeeECCCCCCCcCCCCC
Confidence            4444555444555555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=9.2e-14  Score=134.56  Aligned_cols=234  Identities=15%  Similarity=0.155  Sum_probs=152.7

Q ss_pred             eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470          248 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH  324 (510)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  324 (510)
                      .|.++|...... ..+..+...+.+..|+|||+.|+..+.+   ..|++||+.+++... +....+......|+| +++.
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~  275 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKK  275 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCE
Confidence            677778765433 4455667788999999999998877543   368999998876533 222233345688999 5665


Q ss_pred             E-EEEeCCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeecccccccEE
Q 010470          325 V-VSAAYDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAVT  398 (510)
Q Consensus       325 l-~s~~~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~  398 (510)
                      | ++.+.+|.  |++||+.++...............+|+|||+.|+..+. +|  .|+++|+.+++... +.... ....
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g-~~~~  353 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG-EQNL  353 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC-CCCc
Confidence            5 45566664  88889987765443333344677899999998876543 33  47777887776433 22221 2334


Q ss_pred             EEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-C--eEEEEeCCCc
Q 010470          399 SISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-G--SVYIWSISKA  472 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~  472 (510)
                      ...|+|+|++|+..+.+ +  .|.++|+.++.... +.... ...    ...|+|||+.|+..+.+ |  .+++++. +|
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~----~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G  426 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDE----SPSVAPNGTMVIYSTTYQGKQVLAAVSI-DG  426 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCC----CceECCCCCEEEEEEecCCceEEEEEEC-CC
Confidence            57899999998876653 3  45667887766432 22111 111    24799999988775543 3  3777786 56


Q ss_pred             ceeecccccCcCEEEEEEeCC
Q 010470          473 DIVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       473 ~~~~~~~~~~~~v~~~~~~~~  493 (510)
                      .....+..+.+.+...+|+|-
T Consensus       427 ~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        427 RFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CceEECcCCCCCcCCCccCCC
Confidence            666666666667788899873

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2.2e-13  Score=132.56  Aligned_cols=234  Identities=16%  Similarity=0.175  Sum_probs=155.1

Q ss_pred             eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470          248 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH  324 (510)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  324 (510)
                      .|.++|.+.+. ...+..+...+....|+|||+.|+..+.+   ..|++|++.+++... +....+.+....|+| +++.
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~  256 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSK  256 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCE
Confidence            47788887554 34555667788999999999999877643   379999998886543 333344455789999 6665


Q ss_pred             EE-EEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeecccccccEE
Q 010470          325 VV-SAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAVT  398 (510)
Q Consensus       325 l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~  398 (510)
                      |+ +.+.+|  .|++||+.++................|+|||+.|+..+. +|  .|+++|+.+++..... ... ....
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~-~~~~  334 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVG-NYNA  334 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCC-CCcc
Confidence            54 555555  688889988765443333334567889999998775543 33  5888888777643322 221 3344


Q ss_pred             EEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCc
Q 010470          399 SISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKA  472 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~  472 (510)
                      ...|+|+|+.++..+.+ +  .|.+||+.++.... +... ....    ...|+|||+.++..+.+   ..|+++++. +
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~~~~----~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g  407 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-SLDE----SPSVAPNGTMLIYATRQQGRGVLMLVSIN-G  407 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-CCCC----CceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence            57899999999877654 3  58889998776432 2211 1111    25799999998876653   357777875 4


Q ss_pred             ceeecccccCcCEEEEEEeCC
Q 010470          473 DIVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       473 ~~~~~~~~~~~~v~~~~~~~~  493 (510)
                      .....+..+.+.+...+|+|-
T Consensus       408 ~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        408 RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CceEECcCCCCCcCCCccCCC
Confidence            444445555566778888874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=9e-14  Score=134.28  Aligned_cols=205  Identities=19%  Similarity=0.234  Sum_probs=136.1

Q ss_pred             CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE
Q 010470          289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT  365 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~  365 (510)
                      ..|.++|.. +.....+..+...+.+.+|+| +++.|+..+.+   ..|.+||+.++.............+..|+|||+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            467777764 555555666788899999999 77777766542   4599999998876544334455678999999998


Q ss_pred             EE-EecCCCcEEEE--ECCCCceeeeecccccccEEEEEEcCCCCEEEEEec-CCcEEEEEc--CCceeeeEeecCCCee
Q 010470          366 IF-SGHIDGNLRLW--DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDI--RSLEVCGSLRATGNRV  439 (510)
Q Consensus       366 l~-~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~--~~~~~~~~~~~~~~~~  439 (510)
                      |+ +.+.+|...+|  |+..+. ...+..+. ....+..|+|||+.|+..+. +|...+|.+  .++...... ......
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~  330 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYN  330 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCc
Confidence            87 45667765555  554444 44444433 45667889999998876654 455556554  444332222 121111


Q ss_pred             ecCceeEEEcCCCCEEEEEcCCC---eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          440 ASNWSRSCISPDESYVAAGSADG---SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                          ....|+|||++|+..+.++   .|++||+.+++...... + .......|+|||+.|+.++.++
T Consensus       331 ----~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        331 ----TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             ----CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecC
Confidence                1368999999998776554   69999998876543322 2 2346789999999887766543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.62  E-value=4.6e-12  Score=115.51  Aligned_cols=257  Identities=12%  Similarity=0.089  Sum_probs=169.2

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC----------CCeEEEEEcCCCCeeEeecCCCC------
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS----------SNNLYVWDVNSGRVRHTLTGHTD------  310 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~------  310 (510)
                      ++|.+.|..+++.+..+.....+- .+ ++||++.++++..          +..|.+||..+++.+..+.....      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999888887544333 34 9999999988876          67999999999999988874222      


Q ss_pred             -ceEEEEEecCCCCEEEEEe-C-CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCC-Ccee
Q 010470          311 -KVCAVDVSKISSRHVVSAA-Y-DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT-GKLL  386 (510)
Q Consensus       311 -~v~~i~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~  386 (510)
                       ....+.++| ++++++... . +..|.+.|+.+++.+..+..+....-...+++..++.  +.||......+.+ |+..
T Consensus       105 ~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~  181 (352)
T TIGR02658       105 TYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPK  181 (352)
T ss_pred             CccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEE--eecCceEEEEecCCCceE
Confidence             234688898 777777554 4 7999999999999999888765433333333333222  2344444433322 2211


Q ss_pred             -eeecc--cccccE-EEEEEcC-CCCEEEEEecCCcEEEEEcCC-----ceeeeEeecC---CCeeecCceeEEEcCCCC
Q 010470          387 -SEVAA--HSLAAV-TSISLSR-SGNIILTSGRDNLHNLFDIRS-----LEVCGSLRAT---GNRVASNWSRSCISPDES  453 (510)
Q Consensus       387 -~~~~~--~~~~~i-~~i~~~~-~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~---~~~~~~~~~~~~~s~~~~  453 (510)
                       .....  ....++ ..-.|.+ +|.+++++.. |.|.+.|+..     ......+...   .......+..++++|+|+
T Consensus       182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~  260 (352)
T TIGR02658       182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD  260 (352)
T ss_pred             EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence             11010  000000 0003455 8888887777 9999999643     2222222211   122333445589999999


Q ss_pred             EEEEEc----------CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEee-CCCeEEEcC
Q 010470          454 YVAAGS----------ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASAD-KNGVVCVWT  510 (510)
Q Consensus       454 ~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~iwd  510 (510)
                      .+++..          ..+.|.++|..+++.+..+.. ...+.+++++||++ .|++.+ .++.|.++|
T Consensus       261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            888743          124799999999999988874 34789999999999 777655 577788765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.62  E-value=5.3e-12  Score=118.43  Aligned_cols=261  Identities=16%  Similarity=0.238  Sum_probs=169.5

Q ss_pred             ccceEEEEEecCCCEEEEeeC----CCeEEEEeCCCC--cc--eecccccccceeEEEEecCCCEEEEEe-CCCeEEEEE
Q 010470          225 EGGCASILFEYNSARLISGGQ----DKSIKLWDTNTG--SL--SSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWD  295 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd  295 (510)
                      ......++++|++++|++...    +|.|..|.+...  .+  +............++++|++++|+++. .+|.|.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            345677899999999988876    578999988653  33  333333445667899999999999998 488999999


Q ss_pred             cCC-CCeeEe---ec----------CCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCCCe--Eee--e--eeecCce
Q 010470          296 VNS-GRVRHT---LT----------GHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGY--CVN--T--IIFHSNC  354 (510)
Q Consensus       296 ~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~--~~~--~--~~~~~~i  354 (510)
                      +.. +.....   +.          .......++.++| +++++++.. ....|.+|++....  ...  .  +.....+
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP  194 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP  194 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence            987 432222   21          1234578899999 667666653 34689999987654  322  2  2334568


Q ss_pred             eEEEEcCCCCEEEEe-cCCCcEEEEECC--CCce--eeeeccc-----ccccEEEEEEcCCCCEEEEEec-CCcEEEEEc
Q 010470          355 NALAFSMDGQTIFSG-HIDGNLRLWDIQ--TGKL--LSEVAAH-----SLAAVTSISLSRSGNIILTSGR-DNLHNLFDI  423 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~-~~dg~i~i~d~~--~~~~--~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~  423 (510)
                      ..+.|+|+++++++. ..++.|.+|++.  ++..  +..+...     .......|.++|+|++|+++.. .+.|.+|++
T Consensus       195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            999999999988754 567789999987  4422  2222211     1126889999999999888764 468999999


Q ss_pred             C--Cc--eeeeEeecCCCeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCC--Ccceeeccc-ccCcCEEEEEE
Q 010470          424 R--SL--EVCGSLRATGNRVASNWSRSCISPDESYVAAGS-ADGSVYIWSIS--KADIVRTLK-EHTAPVLSCSW  490 (510)
Q Consensus       424 ~--~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~~-~~~~~v~~~~~  490 (510)
                      .  ++  ..+..+...+..    ...+.++|+|++|++++ .++.|.+|+++  +|.+...-. ..-....||.|
T Consensus       275 d~~~g~l~~~~~~~~~G~~----Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  275 DPATGTLTLVQTVPTGGKF----PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             CTTTTTEEEEEEEEESSSS----EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             ecCCCceEEEEEEeCCCCC----ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            3  23  333344332222    23488999999998876 46789999764  555443322 12344566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.5e-14  Score=130.04  Aligned_cols=251  Identities=18%  Similarity=0.281  Sum_probs=186.4

Q ss_pred             eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-cCCCCceEEEEEecC-CCCEEEEEeCCCcEEEE
Q 010470          260 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVW  337 (510)
Q Consensus       260 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iw  337 (510)
                      ...+..|.+.|..+.|+..|..+++|+.|..|.+||...++....+ .+|...|....|.|. +...+++++.||.+++=
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            3557799999999999999999999999999999999988876666 579999988888886 34678999999999987


Q ss_pred             ECC-CCeEeee---eeecCceeEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecc--cccc---cEEEEEEcCCCC
Q 010470          338 DLH-KGYCVNT---IIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAA--HSLA---AVTSISLSRSGN  407 (510)
Q Consensus       338 d~~-~~~~~~~---~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~---~i~~i~~~~~~~  407 (510)
                      .+. ++.+..+   ..+.+.+.-++.-|+. ..|.+++.|+.+.-+|++.+.+...+..  ....   ....|+..|...
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            764 3333322   2344668889998855 4677999999999999998765544432  1112   577889999665


Q ss_pred             -EEEEEecCCcEEEEEcCCcee------eeEeecCCC--eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC--c----
Q 010470          408 -IILTSGRDNLHNLFDIRSLEV------CGSLRATGN--RVASNWSRSCISPDESYVAAGSADGSVYIWSISK--A----  472 (510)
Q Consensus       408 -~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~----  472 (510)
                       .+++++.|..+++||.+....      +..+..+..  .....+++++++.++.-+.+.-.|-.|++|+-.-  |    
T Consensus       295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~  374 (559)
T KOG1334|consen  295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD  374 (559)
T ss_pred             cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence             889999999999999885332      222222211  2223577899998777777777777899995332  2    


Q ss_pred             ------ceeec-ccccCc--CEEEEE-EeCCCCcEEEeeCCCeEEEcC
Q 010470          473 ------DIVRT-LKEHTA--PVLSCS-WSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       473 ------~~~~~-~~~~~~--~v~~~~-~~~~~~~l~s~~~dg~i~iwd  510 (510)
                            ..+.. +++|.+  .|.++- |.|...++++|+.-|.|.||+
T Consensus       375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence                  12223 677754  466775 568889999999999999996

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=1.8e-13  Score=116.13  Aligned_cols=156  Identities=19%  Similarity=0.328  Sum_probs=113.9

Q ss_pred             EEEEEecCCCEEEEeeC----------CCeEEEEeCCC-Ccceeccc-ccccceeEEEEecCCCEEEEEe--CCCeEEEE
Q 010470          229 ASILFEYNSARLISGGQ----------DKSIKLWDTNT-GSLSSTLY-GCLGSVLDLAITHDNRSVIAAS--SSNNLYVW  294 (510)
Q Consensus       229 ~~~~~s~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iw  294 (510)
                      ..+.|+|+|++|+.-..          -|...+|.++. +.....+. ...++|.+++|+|+|+.+++..  .++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35788999987755433          13455555522 23334443 2345799999999999876653  56799999


Q ss_pred             EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC
Q 010470          295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  371 (510)
                      |+. ++.+..+.  ...+..+.|+| +++++++++.+   |.|.+||.++.+.+...... .++.++|+|+|++|++++.
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence            986 66666664  56778999999 88888888754   67999999988888776544 4789999999999998764


Q ss_pred             ------CCcEEEEECCCCceeeeec
Q 010470          372 ------DGNLRLWDIQTGKLLSEVA  390 (510)
Q Consensus       372 ------dg~i~i~d~~~~~~~~~~~  390 (510)
                            |..++||+. .|+.+....
T Consensus       164 ~~r~~~dng~~Iw~~-~G~~l~~~~  187 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSF-QGRLLYKKP  187 (194)
T ss_pred             ccceeccccEEEEEe-cCeEeEecc
Confidence                  678899997 566665443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=2.6e-13  Score=115.11  Aligned_cols=148  Identities=15%  Similarity=0.273  Sum_probs=108.8

Q ss_pred             eEEEEecCCCEEEEEeC----------CCeEEEEEcCC-CCeeEeecC-CCCceEEEEEecCCCCEEEE--EeCCCcEEE
Q 010470          271 LDLAITHDNRSVIAASS----------SNNLYVWDVNS-GRVRHTLTG-HTDKVCAVDVSKISSRHVVS--AAYDRTLKV  336 (510)
Q Consensus       271 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~-~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s--~~~dg~i~i  336 (510)
                      ..+.|+|+|.+|++-..          -+...+|.++. +.....+.- ..++|.+++|+| ++..|++  |..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence            46889999988776543          13455555532 234444432 345799999999 5555433  446789999


Q ss_pred             EECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC---CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470          337 WDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI---DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG  413 (510)
Q Consensus       337 wd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  413 (510)
                      ||++ +..+..+. ...++.+.|+|+|+++++++.   .|.|.+||.++.+.+.....   ..++.+.|+|+|++|+++.
T Consensus        88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---SDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---CcEEEEEEcCCCCEEEEEE
Confidence            9996 66666654 456889999999999998764   46799999998888776654   4578999999999999987


Q ss_pred             c------CCcEEEEEcC
Q 010470          414 R------DNLHNLFDIR  424 (510)
Q Consensus       414 ~------d~~i~i~d~~  424 (510)
                      .      |+.++||+..
T Consensus       163 t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  163 TSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             eccceeccccEEEEEec
Confidence            4      6788889875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.9e-13  Score=127.36  Aligned_cols=276  Identities=15%  Similarity=0.159  Sum_probs=198.7

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc---------------ceecccccccceeEEEEecCCCEEEEEeCCC
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS---------------LSSTLYGCLGSVLDLAITHDNRSVIAASSSN  289 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  289 (510)
                      .....|+.|+....++++||.||.++|..+.+..               .-.++.||.+.|.-+.|+.+.+.|-++..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4568899999999999999999999999875421               1246789999999999999999999999999


Q ss_pred             eEEEEEcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE
Q 010470          290 NLYVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF  367 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  367 (510)
                      .|.+|-+-.|.....+.  ...+.|.+++|+. ++..+.....||.|.+=.+..++.-..-........+.|++|...++
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence            99999998876544332  2456788999998 88889999999999887776443322222223356789999999999


Q ss_pred             EecCCCcEEEEECCCC-------ceeeeecc---cccccEEEEEEc--------CCCCEEEEEecCCcEEEEEcCCceee
Q 010470          368 SGHIDGNLRLWDIQTG-------KLLSEVAA---HSLAAVTSISLS--------RSGNIILTSGRDNLHNLFDIRSLEVC  429 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~-------~~~~~~~~---~~~~~i~~i~~~--------~~~~~l~~~~~d~~i~i~d~~~~~~~  429 (510)
                      .+-.+|.+.+||....       .+.....+   .....+..+.|.        |+...|+++..+|.+.|..-.+....
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            9999999999996422       01001110   011235556654        57789999999998888755443322


Q ss_pred             eEeecCCCeeecCceeEEEcCCCCEEEEEcCC---------CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          430 GSLRATGNRVASNWSRSCISPDESYVAAGSAD---------GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      ..+... ..+    ....|+++|..|++++.+         +.|.+|. .-|..+.+++.....|++++|-..|-.++.+
T Consensus       253 vv~dtg-m~~----vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  253 VVVDTG-MKI----VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             eEEecc-cEe----ecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE
Confidence            222222 222    237899999999998864         2567766 5588888888888899999998777666554


Q ss_pred             eCCCeEEE
Q 010470          501 DKNGVVCV  508 (510)
Q Consensus       501 ~~dg~i~i  508 (510)
                       .|+.|++
T Consensus       327 -vdsfiyf  333 (1189)
T KOG2041|consen  327 -VDSFIYF  333 (1189)
T ss_pred             -ecceEEE
Confidence             4556554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.57  E-value=3.5e-12  Score=122.02  Aligned_cols=256  Identities=16%  Similarity=0.142  Sum_probs=172.9

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeE-EEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceE-
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD-LAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVC-  313 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-  313 (510)
                      ++..++.++.+|.+..+|..+|+.+....... .+.+ ...  .+..++.++.+|.++.||..+|+.+..+......+. 
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~  180 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL  180 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence            46688888899999999999998876654322 2221 122  345678888899999999999998877754332211 


Q ss_pred             ----EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-----e---eEEEEcC--CCCEEEEecCCCcEEEEE
Q 010470          314 ----AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-----C---NALAFSM--DGQTIFSGHIDGNLRLWD  379 (510)
Q Consensus       314 ----~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----i---~~i~~~~--~~~~l~~~~~dg~i~i~d  379 (510)
                          +..+   .+..++.+..+|.+..+|+.+|+.+........     +   ..+.-+|  .+..+++++.+|.++.||
T Consensus       181 ~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       181 RGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             cCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence                1111   124677888889999999999987765432211     0   0111111  356778888899999999


Q ss_pred             CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      ..+|+.+.......   .....  ..+..+++++.+|.+..+|..+++.+............   ...+  .+..|++++
T Consensus       258 ~~tG~~~W~~~~~~---~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s---sp~i--~g~~l~~~~  327 (377)
T TIGR03300       258 LRSGRVLWKRDASS---YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT---APAV--VGGYLVVGD  327 (377)
T ss_pred             CCCCcEEEeeccCC---ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccc---cCEE--ECCEEEEEe
Confidence            99998877665321   11222  24678888889999999999998876655322111111   1112  467889999


Q ss_pred             CCCeEEEEeCCCcceeecccccCcCEE-EEEEeCCCCcEEEeeCCCeEEEc
Q 010470          460 ADGSVYIWSISKADIVRTLKEHTAPVL-SCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       460 ~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      .+|.|+++|..+++.+..++.+...+. +..+. ++ .|+.++.||.|+.|
T Consensus       328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            999999999999999988876654433 33333 33 58888999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.57  E-value=1.5e-13  Score=125.07  Aligned_cols=189  Identities=21%  Similarity=0.225  Sum_probs=129.0

Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCcceeccc----ccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCeeEeecCCC
Q 010470          235 YNSARLISGGQDKSIKLWDTNTGSLSSTLY----GCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHT  309 (510)
Q Consensus       235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  309 (510)
                      |.|--++.|-.-|.|.+.|....+....+.    -....|+++.|-|.+. .++++-.+|.+++||..-          .
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~----------~  252 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI----------V  252 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc----------c
Confidence            456668888888999999876533322221    1247899999988665 455666899999998621          1


Q ss_pred             CceEEEEEec-CCCCEEEEEeCCCcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceee
Q 010470          310 DKVCAVDVSK-ISSRHVVSAAYDRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS  387 (510)
Q Consensus       310 ~~v~~i~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  387 (510)
                      ...+...|.. .++..+.....-+.      .+..++..+ .....|+.++|+|||++|++.+.||.++|||..+.+.+.
T Consensus       253 ~~~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg  326 (636)
T KOG2394|consen  253 CGATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG  326 (636)
T ss_pred             ccCCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence            1111111111 02333322211100      011222222 233579999999999999999999999999999888776


Q ss_pred             eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeee
Q 010470          388 EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA  440 (510)
Q Consensus       388 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  440 (510)
                      .++..- +...|++|||||+||++|+.|..|.||.+...+++..-.+|...+.
T Consensus       327 ~mkSYF-GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  327 VMKSYF-GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS  378 (636)
T ss_pred             HHHhhc-cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence            666655 8899999999999999999999999999998888776666655443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.1e-12  Score=120.44  Aligned_cols=252  Identities=16%  Similarity=0.254  Sum_probs=162.8

Q ss_pred             ceEEEEEecCCCEEEEe-----eC-----CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          227 GCASILFEYNSARLISG-----GQ-----DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      .+.++.|||.|.+|.+-     ..     .-.+.+|++.++.....+......-++..|++|..+.+ --..+.+++|++
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~  153 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDL  153 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEec
Confidence            68899999999998762     11     23578999998665555543333336888888776332 223456788877


Q ss_pred             CCCCeeEeecCCCCceEEEEEecC----------------------------------------------------CCCE
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKI----------------------------------------------------SSRH  324 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~----------------------------------------------------~~~~  324 (510)
                      .+.+.+. -.-|...|..+.++|.                                                    ...+
T Consensus       154 ~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~L  232 (566)
T KOG2315|consen  154 GSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTAL  232 (566)
T ss_pred             CCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceE
Confidence            6532111 1113344444444442                                                    2222


Q ss_pred             EEEEeC--C---------CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE--ecCCCcEEEEECCCCceeeeecc
Q 010470          325 VVSAAY--D---------RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS--GHIDGNLRLWDIQTGKLLSEVAA  391 (510)
Q Consensus       325 l~s~~~--d---------g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~  391 (510)
                      |+..+.  |         .+++++++....+.-.+...++|.+++|+|+|+.+++  |..-..+.|||+ .++++..+..
T Consensus       233 LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~e  311 (566)
T KOG2315|consen  233 LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFPE  311 (566)
T ss_pred             EEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCCC
Confidence            222111  1         1344444443333344444577999999999987765  555678999998 5777766654


Q ss_pred             cccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC------CC
Q 010470          392 HSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA------DG  462 (510)
Q Consensus       392 ~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg  462 (510)
                         ++-+++-|+|.|++++.++.+   |.+.|||..+.+.+..+.......      +.|+|||.+|++++.      |+
T Consensus       312 ---gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~------~eW~PdGe~flTATTaPRlrvdN  382 (566)
T KOG2315|consen  312 ---GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV------FEWSPDGEYFLTATTAPRLRVDN  382 (566)
T ss_pred             ---CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE------EEEcCCCcEEEEEeccccEEecC
Confidence               677889999999999988765   789999999988888777665544      689999999998875      67


Q ss_pred             eEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470          463 SVYIWSISKADIVRTLKEHTAPVLSCSWSG  492 (510)
Q Consensus       463 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  492 (510)
                      .++||++. |..+....-. +....+.|-|
T Consensus       383 g~Kiwhyt-G~~l~~~~f~-sEL~qv~W~P  410 (566)
T KOG2315|consen  383 GIKIWHYT-GSLLHEKMFK-SELLQVEWRP  410 (566)
T ss_pred             CeEEEEec-Cceeehhhhh-HhHhheeeee
Confidence            79999965 5444332211 1356666664

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.56  E-value=5.7e-13  Score=123.11  Aligned_cols=183  Identities=21%  Similarity=0.322  Sum_probs=150.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEeeeeeec----CceeEEEEc--------------------CCCCEEEEecCCCcEE
Q 010470          321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH----SNCNALAFS--------------------MDGQTIFSGHIDGNLR  376 (510)
Q Consensus       321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~i~~~--------------------~~~~~l~~~~~dg~i~  376 (510)
                      ...+++....||.+++||...++....+...    +.+++..|.                    .+...++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            5678999999999999999998877776543    234444442                    1234678899999999


Q ss_pred             EEECCCCceeeeec-ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470          377 LWDIQTGKLLSEVA-AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       377 i~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  455 (510)
                      +|+...|+....+. ..+.++|+++.++.+-..|.+++.|+.+..|+......+..+........+    ++++|||..+
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s----l~is~D~~~l  159 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS----LCISPDGKIL  159 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce----EEEcCCCCEE
Confidence            99999999888887 555689999999999999999999999999999999998888877666655    9999999999


Q ss_pred             EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCC-----CCcEEE-eeCCCeEEEc
Q 010470          456 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL-----GKPLAS-ADKNGVVCVW  509 (510)
Q Consensus       456 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s-~~~dg~i~iw  509 (510)
                      ++++  +.|.+||+.+++.+..|.+|.++|.+++|..+     |.++.+ ...+..+.+|
T Consensus       160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence            9887  57999999999999999999999999999877     666555 3444455555

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=6.7e-13  Score=130.31  Aligned_cols=138  Identities=25%  Similarity=0.390  Sum_probs=115.0

Q ss_pred             hhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee-cccccccc
Q 010470          191 KQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-TLYGCLGS  269 (510)
Q Consensus       191 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~  269 (510)
                      .++.-+.+-+|...     +...|.    .+.||.|.|..+.|+.||.++++.|.|.++++|++++.+... +..+|+..
T Consensus       150 ~gsv~~~iivW~~~-----~dn~p~----~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR  220 (967)
T KOG0974|consen  150 SGSVFGEIIVWKPH-----EDNKPI----RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR  220 (967)
T ss_pred             eccccccEEEEecc-----ccCCcc----eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence            34455556666643     222222    789999999999999999999999999999999999988766 77899999


Q ss_pred             eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC-CceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470          270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT-DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      |+.++|.|+  ++++++.|.+.++|+.+ +.....+.+|. ..++.+.+.+ +...+++++.||.+++||+..
T Consensus       221 vw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  221 VWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence            999999988  89999999999999755 55556888876 4588999887 788999999999999999853

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=1.8e-12  Score=118.65  Aligned_cols=264  Identities=13%  Similarity=0.226  Sum_probs=166.9

Q ss_pred             eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC-----------CCeEEEEEc
Q 010470          228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-----------SNNLYVWDV  296 (510)
Q Consensus       228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~  296 (510)
                      =+-+.|||.|.||+|-..-| |.+|--.+...++.+.  ...|.-+.|||+.+||++-+.           ...+.|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            46789999999999988766 8899766655555553  346788999999999998653           258999999


Q ss_pred             CCCCeeEeecCCCC--ce-EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEecC-
Q 010470          297 NSGRVRHTLTGHTD--KV-CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGHI-  371 (510)
Q Consensus       297 ~~~~~~~~~~~~~~--~v-~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~-  371 (510)
                      .+|.....+....+  .+ .-+.|+. ++.+++.-.. .+|.||+..+-.++..-.. .++|....|+|.++.|+--+. 
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             cccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence            99998888765322  22 3467887 7788877664 5788888765332221111 133555555555554442110 


Q ss_pred             -C---C----------------------------------------------------cEEEEECCCCce-eeeeccccc
Q 010470          372 -D---G----------------------------------------------------NLRLWDIQTGKL-LSEVAAHSL  394 (510)
Q Consensus       372 -d---g----------------------------------------------------~i~i~d~~~~~~-~~~~~~~~~  394 (510)
                       +   .                                                    ++.||.++.... +..+..  .
T Consensus       368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel--k  445 (698)
T KOG2314|consen  368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL--K  445 (698)
T ss_pred             ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--c
Confidence             0   0                                                    122222221111 111111  1


Q ss_pred             ccEEEEEEcCCCCEEEEEecC---CcEEEEEcCC-c---eeeeEeecCCCeeecCceeEEEcCCCCEEEEE---cCCCeE
Q 010470          395 AAVTSISLSRSGNIILTSGRD---NLHNLFDIRS-L---EVCGSLRATGNRVASNWSRSCISPDESYVAAG---SADGSV  464 (510)
Q Consensus       395 ~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~---~~dg~i  464 (510)
                      ..|...+|.|.|+.+++-+.+   .++.+|.+.+ .   ..+..+..      ...+.+.|+|.|++++.+   |..|.+
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk------~~~N~vfwsPkG~fvvva~l~s~~g~l  519 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK------KFANTVFWSPKGRFVVVAALVSRRGDL  519 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc------cccceEEEcCCCcEEEEEEecccccce
Confidence            467788999999987765543   4788887763 1   11222211      123448899999998875   457889


Q ss_pred             EEEeCCCcceeecc-cccCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470          465 YIWSISKADIVRTL-KEHTAPVLSCSWSGLGKPLASADKNGV  505 (510)
Q Consensus       465 ~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~  505 (510)
                      .++|+.......+- ..|. ..+.+.|.|.|+|++++++-+.
T Consensus       520 ~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wr  560 (698)
T KOG2314|consen  520 EFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWR  560 (698)
T ss_pred             EEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhh
Confidence            99998753332222 2243 4578999999999999987543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.55  E-value=3.1e-12  Score=124.54  Aligned_cols=205  Identities=20%  Similarity=0.217  Sum_probs=138.5

Q ss_pred             CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE
Q 010470          289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT  365 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~  365 (510)
                      ..|.++|.... ....+..+...+.+..|+| +++.++.++.+   ..|++||+.++.............+++|+|||+.
T Consensus       170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGA-NPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCC-CCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            36888887543 3455555777888999999 77777766543   4799999998865544444455677899999997


Q ss_pred             EEE-ecCCC--cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEeecCCCee
Q 010470          366 IFS-GHIDG--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       366 l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~  439 (510)
                      |+. .+.++  .|++||+.++... .+..+. .......|+|+|+.|+..+.. +  .|+++|+.+++... +...... 
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~-  323 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGY-  323 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEE-ECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCC-
Confidence            764 44444  5999998876543 333332 345567899999988766543 3  57888887765432 2222222 


Q ss_pred             ecCceeEEEcCCCCEEEEEcCCC---eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          440 ASNWSRSCISPDESYVAAGSADG---SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                         .....|+|+|++|+.++.++   .|.+||+.++... .+... ......+|+|+|++|+..+.++
T Consensus       324 ---~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       324 ---NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             ---ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence               22378999999999888765   7999998875443 22222 2234568999999888766654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.55  E-value=2.1e-12  Score=119.44  Aligned_cols=188  Identities=14%  Similarity=0.236  Sum_probs=152.0

Q ss_pred             ecCCCEEEEeeCCCeEEEEeCCCCcceecccc---cccceeEEEEe------c--------------CCCEEEEEeCCCe
Q 010470          234 EYNSARLISGGQDKSIKLWDTNTGSLSSTLYG---CLGSVLDLAIT------H--------------DNRSVIAASSSNN  290 (510)
Q Consensus       234 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~~~d~~  290 (510)
                      .|.+.++|....||.++||+...++....+..   -.+..++..|.      |              +...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            35567999999999999999998877555442   23344445542      2              4456777888999


Q ss_pred             EEEEEcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEE
Q 010470          291 LYVWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIF  367 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~  367 (510)
                      |.+|++..|+....+.  +|.+.|.++.++. .-..|.+++.|+.+..|+...+..+..+.... .+.+++++|||..++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            9999999999888775  6999999999887 78899999999999999999998888887664 489999999999999


Q ss_pred             EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCC-----CCEEEEEe-cCCcEEEEEcCC
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS-----GNIILTSG-RDNLHNLFDIRS  425 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~~~~-~d~~i~i~d~~~  425 (510)
                      +++  +.|.+||+.+++.+..|.+|. ++|+++.|.-+     |.+++++. .+..+.+|-...
T Consensus       161 ~as--~~ik~~~~~~kevv~~ftgh~-s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFTGHG-SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEecCCC-cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            887  589999999999999999998 99999999876     67766654 344566665543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.54  E-value=8e-12  Score=119.55  Aligned_cols=258  Identities=16%  Similarity=0.123  Sum_probs=172.4

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEE
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV  315 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i  315 (510)
                      .+..+++++.+|.|..+|..+|+.+............+..  ++..+++++.+|.++.+|..+|+.+....... .+.+.
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~  140 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP  140 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence            3668889999999999999999987665433322222222  56788889999999999999999887765332 22221


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCcee------EEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 010470          316 DVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN------ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV  389 (510)
Q Consensus       316 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~------~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  389 (510)
                      -..  .+..++.++.+|.+..||..+|+.+..+.......      +..+  .+..++++..+|.+..+|..+|+.+...
T Consensus       141 p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       141 PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence            111  24567777789999999999999887775543321      1111  2346778888999999999999877654


Q ss_pred             cccccc---c---EEEEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470          390 AAHSLA---A---VTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD  461 (510)
Q Consensus       390 ~~~~~~---~---i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  461 (510)
                      ......   .   ...+.-+|  .+..+++++.+|.+..||..+++.........      .  .....++..+++++.+
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~------~--~~p~~~~~~vyv~~~~  288 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS------Y--QGPAVDDNRLYVTDAD  288 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC------c--cCceEeCCEEEEECCC
Confidence            321100   0   00111111  35678888899999999999988776554211      1  1122356788888899


Q ss_pred             CeEEEEeCCCcceeeccccc-CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          462 GSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       462 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |.|+.+|..+++.+...... .....+...  .+..|++++.+|.|++||
T Consensus       289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence            99999999999887665321 112222222  356888889999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=7.9e-13  Score=129.81  Aligned_cols=271  Identities=16%  Similarity=0.250  Sum_probs=185.3

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc-cccee---EEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC-LGSVL---DLAITHDNRSVIAASSSNNLYVWDVNSG  299 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~---~~~~~~~~~~l~~~~~d~~i~iwd~~~~  299 (510)
                      |-+++++..+-.  ++|..|. --.|.+||+.++..+..+... ...+.   .. ..-.+.+++++..-+.+..=+.. .
T Consensus         6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~-~~l~~~~~v~~~~~~~v~~~~~~-~   80 (967)
T KOG0974|consen    6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGK-VKLLSGKIVTCAKSDEVYVKEAS-N   80 (967)
T ss_pred             ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhccccccccccc-ceeccceEEEEEeecceeecchh-h
Confidence            345556665544  5666655 347999999988765544321 11111   00 00123345555544333332211 1


Q ss_pred             CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-----eeEEEEcCCCCEEEEecCCCc
Q 010470          300 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-----CNALAFSMDGQTIFSGHIDGN  374 (510)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----i~~i~~~~~~~~l~~~~~dg~  374 (510)
                      .....+   .+.+....+.. ....++.++.++.+.+||...+.....+.....     ..-+.++++.-++++|+.-|.
T Consensus        81 ~~~~~~---s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~  156 (967)
T KOG0974|consen   81 QIIERF---SDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE  156 (967)
T ss_pred             hhhhhc---cccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence            111222   23333334443 567788888899999999988877777666544     223344667778999999999


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      |.+|+....+....+.+|. +.|.++.++.||.++++.+.|..+++|++.+.+...   .....+...+..++|.|+  .
T Consensus       157 iivW~~~~dn~p~~l~GHe-G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~  230 (967)
T KOG0974|consen  157 IIVWKPHEDNKPIRLKGHE-GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--R  230 (967)
T ss_pred             EEEEeccccCCcceecccC-CceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--e
Confidence            9999987444444566666 999999999999999999999999999999877655   222233334445889888  9


Q ss_pred             EEEEcCCCeEEEEeCCCcceeecccccC-cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          455 VAAGSADGSVYIWSISKADIVRTLKEHT-APVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +++++.|-+.++|+.+ +..+..+..|. ..|..++..++...++|++.||.+++|+
T Consensus       231 i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  231 IITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             eEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            9999999999999754 55566777775 4689999999999999999999999996

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.53  E-value=7.8e-11  Score=107.55  Aligned_cols=236  Identities=13%  Similarity=0.112  Sum_probs=157.4

Q ss_pred             EecCCCEEEEeeC----------CCeEEEEeCCCCcceeccccc-------ccceeEEEEecCCCEEEEEe-C-CCeEEE
Q 010470          233 FEYNSARLISGGQ----------DKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITHDNRSVIAAS-S-SNNLYV  293 (510)
Q Consensus       233 ~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~-~-d~~i~i  293 (510)
                      +||||+.|+++..          +..|.+||..+++.+..+...       ......++++|||+++++.. . ++.|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998877765          789999999999998777632       22334789999999999877 4 789999


Q ss_pred             EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeE-eeeeee-cC---ce-eEEEEcC-CCCE
Q 010470          294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYC-VNTIIF-HS---NC-NALAFSM-DGQT  365 (510)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~-~~~~~~-~~---~i-~~i~~~~-~~~~  365 (510)
                      +|+.+++.+..+.-.. ...-... + +..+. +.+.||......+.+ |+. ...... +.   .+ ..-.|.+ +|.+
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t-~-e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~  208 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPT-A-NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL  208 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEe-c-CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence            9999999988887432 1111212 1 22222 333355555543322 221 111111 11   00 0013445 8888


Q ss_pred             EEEecCCCcEEEEECCCC-----ceeeeeccc------ccccEEEEEEcCCCCEEEEEe----------cCCcEEEEEcC
Q 010470          366 IFSGHIDGNLRLWDIQTG-----KLLSEVAAH------SLAAVTSISLSRSGNIILTSG----------RDNLHNLFDIR  424 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~~-----~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~----------~d~~i~i~d~~  424 (510)
                      +++... |.|++.|+...     .....+...      ..+.+.-++++|+++.+++..          ..+.|.++|..
T Consensus       209 ~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~  287 (352)
T TIGR02658       209 VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK  287 (352)
T ss_pred             EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence            887776 99999996432     222222211      123445599999999888743          22579999999


Q ss_pred             CceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEc-CCCeEEEEeCCCcceeecc
Q 010470          425 SLEVCGSLRATGNRVASNWSRSCISPDES-YVAAGS-ADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~  478 (510)
                      +++.+..+.......     .++++|||+ +|++.+ .++.|.++|..+++.+.++
T Consensus       288 t~kvi~~i~vG~~~~-----~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       288 TGKRLRKIELGHEID-----SINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCeEEEEEeCCCcee-----eEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            999998887654333     389999999 777666 5788999999999998887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=8e-12  Score=121.68  Aligned_cols=202  Identities=16%  Similarity=0.165  Sum_probs=135.5

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCC---CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCC--eE
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSN--NL  291 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i  291 (510)
                      ...+..+...+....|+|||+.|+..+.+   ..|.+||+.++.... +....+.+....|+|||+.|+.. +.+|  .|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            34455677789999999999998876643   369999998876533 33333455678999999988754 4444  68


Q ss_pred             EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEe-CCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE
Q 010470          292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS  368 (510)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  368 (510)
                      ++||+.++... .+..+........|+| ++..++..+ .+|  .|+++|+.++................|+|+|+.++.
T Consensus       270 y~~d~~~~~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        270 YVMDLASRQLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEECCCCCeE-EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence            88899887654 3555555667788999 666555444 333  578888877765433322233446789999999887


Q ss_pred             ecCC-C--cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCC
Q 010470          369 GHID-G--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRS  425 (510)
Q Consensus       369 ~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~  425 (510)
                      .+.+ +  .|.+||+.++... .+...  .......|+|+|+.++..+.+   ..+.++++..
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~-~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVR-ILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             EEccCCceEEEEEECCCCCEE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            6543 3  5888999877643 33222  122356899999988876654   2466666643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.52  E-value=1e-11  Score=112.81  Aligned_cols=272  Identities=15%  Similarity=0.220  Sum_probs=185.5

Q ss_pred             cceEEEEEecCCCEEEEeeCCC---------------eEEEEeCCCCcceecccccccc--ee-EEEEecCCCEEEEEeC
Q 010470          226 GGCASILFEYNSARLISGGQDK---------------SIKLWDTNTGSLSSTLYGCLGS--VL-DLAITHDNRSVIAASS  287 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~  287 (510)
                      ..|..+.|||.+++|.+-+..+               .+.+||..+|..+..+..-..+  .+ -+.|+-+.++++-. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            4588999999999999865433               4999999999999888776655  45 67888888877655 3


Q ss_pred             CCeEEEEEcCCCCe-eEeecC-CCCceEEEEEecC-CCCEEEE-----EeCCCcEEEEECCCCeEeeeeeec-CceeEEE
Q 010470          288 SNNLYVWDVNSGRV-RHTLTG-HTDKVCAVDVSKI-SSRHVVS-----AAYDRTLKVWDLHKGYCVNTIIFH-SNCNALA  358 (510)
Q Consensus       288 d~~i~iwd~~~~~~-~~~~~~-~~~~v~~i~~~~~-~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~  358 (510)
                      ...++|+++ ++.. ...+.. ....|....|+|. ++..|+.     .+..+++++|.+..+..+.+...- -.-..+.
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk  229 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK  229 (561)
T ss_pred             cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence            347999997 3332 111111 1356788888885 2333342     456789999999877665554332 2234688


Q ss_pred             EcCCCCEEEEec-----------CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe--cCCcEEEEEcCC
Q 010470          359 FSMDGQTIFSGH-----------IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG--RDNLHNLFDIRS  425 (510)
Q Consensus       359 ~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~i~d~~~  425 (510)
                      |.+.|.++++-.           ...+++++++......... .- .++|...+|.|.++.+++.+  ....+.++|++.
T Consensus       230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~-~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DL-KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cc-cccceeeeecccCCceeEEecccccceeeccccc
Confidence            888888776421           1246888988643333232 22 38999999999988776654  677899999987


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCcceee-cccccCcCEEEEEEeCCCCcEEEee
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVR-TLKEHTAPVLSCSWSGLGKPLASAD  501 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~  501 (510)
                      . ....+.....  .    .+.|+|.+++++.++.|   |.|-+||......+. .+.+..  ..-+.|+|||.++.+..
T Consensus       308 N-l~~~~Pe~~r--N----T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~  378 (561)
T COG5354         308 N-LRFYFPEQKR--N----TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDT  378 (561)
T ss_pred             c-eEEecCCccc--c----cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecC
Confidence            6 3333322221  1    26799999999887665   789999987654443 554433  45678999999877654


Q ss_pred             ------CCCeEEEcC
Q 010470          502 ------KNGVVCVWT  510 (510)
Q Consensus       502 ------~dg~i~iwd  510 (510)
                            .|..|.||+
T Consensus       379 ts~k~~~Dn~i~l~~  393 (561)
T COG5354         379 TSEKLRVDNSIKLWD  393 (561)
T ss_pred             CCcccccCcceEEEE
Confidence                  367788885

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.9e-11  Score=117.48  Aligned_cols=238  Identities=10%  Similarity=0.061  Sum_probs=147.4

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCE--E-EEEeCC--CeEEEEEcCCCCeeEeecCCCCceEEEEEecCC
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRS--V-IAASSS--NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS  321 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  321 (510)
                      +.|.+.|.+.+.. ..+......+.+-.|+|||+.  + ++...+  ..|++.++.+++.... ....+......|+| +
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSP-D  241 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSP-R  241 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECC-C
Confidence            4677778775544 334445566778899999975  2 234333  3688889887764333 32444556689999 6


Q ss_pred             CCEEEEEe-CCC----cEEEEECCCC---eEeeeeeec-CceeEEEEcCCCCEEEEec-CCCc--EEEEECCC-Cceeee
Q 010470          322 SRHVVSAA-YDR----TLKVWDLHKG---YCVNTIIFH-SNCNALAFSMDGQTIFSGH-IDGN--LRLWDIQT-GKLLSE  388 (510)
Q Consensus       322 ~~~l~s~~-~dg----~i~iwd~~~~---~~~~~~~~~-~~i~~i~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~  388 (510)
                      ++.|+..+ .+|    .+..|++..+   ......... ......+|+|||+.|+..+ .+|.  |+++++.. +.....
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~  321 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL  321 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence            66665544 223    3444776643   333333222 2346789999999877654 4565  44445532 233333


Q ss_pred             ecccccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC---CC
Q 010470          389 VAAHSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA---DG  462 (510)
Q Consensus       389 ~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg  462 (510)
                      +.... ..+....|+|||+.|+..+.+   ..|.+||+.+++....... ...    .....|+|||++|+..+.   .+
T Consensus       322 lt~~~-~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~----~~~p~wSpDG~~L~f~~~~~g~~  395 (428)
T PRK01029        322 LTKKY-RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PEN----KESPSWAIDSLHLVYSAGNSNES  395 (428)
T ss_pred             eccCC-CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCC----ccceEECCCCCEEEEEECCCCCc
Confidence            43333 466788999999988876543   3689999988776433322 111    223789999998875433   35


Q ss_pred             eEEEEeCCCcceeecccccCcCEEEEEEeCCC
Q 010470          463 SVYIWSISKADIVRTLKEHTAPVLSCSWSGLG  494 (510)
Q Consensus       463 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  494 (510)
                      .|++||+.+++...... ..+.+...+|+|-.
T Consensus       396 ~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~  426 (428)
T PRK01029        396 ELYLISLITKKTRKIVI-GSGEKRFPSWGAFP  426 (428)
T ss_pred             eEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence            68999988776544333 44556778998754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.52  E-value=3.6e-11  Score=127.14  Aligned_cols=242  Identities=13%  Similarity=0.150  Sum_probs=166.7

Q ss_pred             EEEEEecC-CCEEEEeeCCCeEEEEeCCCCcceecccc--------------cccceeEEEEecCCCEEEEEe-CCCeEE
Q 010470          229 ASILFEYN-SARLISGGQDKSIKLWDTNTGSLSSTLYG--------------CLGSVLDLAITHDNRSVIAAS-SSNNLY  292 (510)
Q Consensus       229 ~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~-~d~~i~  292 (510)
                      ..++++++ |.++++-+.++.|.+||... ..+..+.+              .-.....++++++++.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            56788874 66777778889999999864 33322221              112457899999988776665 457899


Q ss_pred             EEEcCCCCeeEeecCC-----------------CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-----
Q 010470          293 VWDVNSGRVRHTLTGH-----------------TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-----  350 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----  350 (510)
                      ++|+.++. +.++.+-                 -....+++++|.++.++++.+.++.|++||..++.... +..     
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER  727 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence            99987654 3333110                 12346789998666777787888999999998775432 211     


Q ss_pred             -----------cCceeEEEEcCCCCE-EEEecCCCcEEEEECCCCceeeeec-------------cc-------ccccEE
Q 010470          351 -----------HSNCNALAFSMDGQT-IFSGHIDGNLRLWDIQTGKLLSEVA-------------AH-------SLAAVT  398 (510)
Q Consensus       351 -----------~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~-------~~~~i~  398 (510)
                                 ...+..++++|+|.. +++.+.++.|++||+.++.......             ..       ......
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                       123678999999984 4566677899999998765321110             00       012356


Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC----------eeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          399 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN----------RVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      +++++++|+++++.+.++.|++||..++....... .+.          ........++++++|+++++.+.++.|++||
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            89999999999999999999999998776553322 111          0111345589999999999999999999999


Q ss_pred             CCCcce
Q 010470          469 ISKADI  474 (510)
Q Consensus       469 ~~~~~~  474 (510)
                      +.+++.
T Consensus       887 ~~~~~~  892 (1057)
T PLN02919        887 LNKGEA  892 (1057)
T ss_pred             CCCCcc
Confidence            988764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.52  E-value=2.2e-12  Score=111.27  Aligned_cols=243  Identities=16%  Similarity=0.297  Sum_probs=167.5

Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-----eeEeecCCC------------CceEEEEEecC-CCCEEEE
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-----VRHTLTGHT------------DKVCAVDVSKI-SSRHVVS  327 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~-~~~~l~s  327 (510)
                      ....|.++.|...|.+|++|+.+|.|.+|.-....     ....+..|.            .+|..+.|.+. +...++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            35678899999999999999999999999643322     233343443            36788888874 3356777


Q ss_pred             EeCCCcEEEEECCCCe-----------------------------------Eeeeeee--cCceeEEEEcCCCCEEEEec
Q 010470          328 AAYDRTLKVWDLHKGY-----------------------------------CVNTIIF--HSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       328 ~~~dg~i~iwd~~~~~-----------------------------------~~~~~~~--~~~i~~i~~~~~~~~l~~~~  370 (510)
                      .+.|.+|++|.+....                                   +.+.+..  ...++++.++.|+..++++.
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            7889999999875321                                   1111111  12378999999999888775


Q ss_pred             CCCcEEEEECCCCceee---eecccc----cccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceee----eEeecCCC-
Q 010470          371 IDGNLRLWDIQTGKLLS---EVAAHS----LAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVC----GSLRATGN-  437 (510)
Q Consensus       371 ~dg~i~i~d~~~~~~~~---~~~~~~----~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~-  437 (510)
                       |=.|.+|++.-.....   .++.+.    ...|++..|+|. .+.++-++..|.|++.|++.....    ..+..+.. 
T Consensus       184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence             5689999986433222   222221    135888999995 567888889999999999853322    11111111 


Q ss_pred             -------eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC-CcceeecccccC------------cCE---EEEEEeCCC
Q 010470          438 -------RVASNWSRSCISPDESYVAAGSADGSVYIWSIS-KADIVRTLKEHT------------APV---LSCSWSGLG  494 (510)
Q Consensus       438 -------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~v---~~~~~~~~~  494 (510)
                             .+...++.+.|+++|+|+++-+. -+|++||+. ..+++.+++-|.            ..|   ..++|+.++
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence                   12345677899999999998765 469999994 456666665443            223   568999999


Q ss_pred             CcEEEeeCCCeEEEcC
Q 010470          495 KPLASADKNGVVCVWT  510 (510)
Q Consensus       495 ~~l~s~~~dg~i~iwd  510 (510)
                      .+++||+....+++|+
T Consensus       342 ~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  342 SYVMTGSYNNVFRVFN  357 (433)
T ss_pred             ceEecccccceEEEec
Confidence            9999999999999875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=1.6e-13  Score=125.43  Aligned_cols=281  Identities=13%  Similarity=0.202  Sum_probs=194.9

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-------CcceecccccccceeEEEEecCCCEEEEEeCCCe
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN  290 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  290 (510)
                      ...+.||+..|..++--.+.+-+++++.|.+|++|.+..       ..+..++..|..+|.++.|-.+.++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            346889999999998777888999999999999999853       23566788999999999999988877654  788


Q ss_pred             EEEEEcCCCCeeEeecC--CCCceEEEEEecC-CCCEEEEE-eCCCcEEEEECCCCeEeeeeeec------CceeEEEEc
Q 010470          291 LYVWDVNSGRVRHTLTG--HTDKVCAVDVSKI-SSRHVVSA-AYDRTLKVWDLHKGYCVNTIIFH------SNCNALAFS  360 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~------~~i~~i~~~  360 (510)
                      |.+||.--++++..+..  ..+.+..+...+. +..+++.| +...+|+++|.+.+.....+...      .-+.++++.
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            99999887776553321  1233333444443 34444444 67899999999988766665432      237899999


Q ss_pred             CCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE-EEcCCceeeeEeecCCCee
Q 010470          361 MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL-FDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       361 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~  439 (510)
                      +.|++++++-.+|+|.+.|.++|+.+..+.... .....++ .|..+.++.+..|..+.+ |..-.+........+..+.
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa  963 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPME-CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA  963 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCccc-chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence            999999999999999999999999888776543 2222222 355667777778888888 8766655444443333222


Q ss_pred             ecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC----cceeeccc--ccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          440 ASNWSRSCISPDESYVAAGSADGSVYIWSISK----ADIVRTLK--EHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      ..      +..-|.-+++......+.||--..    ...+..++  ...+..++++--|-+..+..|+..|.|.+
T Consensus       964 hf------lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  964 HF------LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             hh------hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            11      122355667766666677774211    11111222  13466788888888888888888888875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=7.2e-12  Score=121.46  Aligned_cols=207  Identities=14%  Similarity=0.117  Sum_probs=132.3

Q ss_pred             eccccccceEEEEEecCCCEEEEeeCC---CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCC--eEEE
Q 010470          220 KINAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSN--NLYV  293 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~i  293 (510)
                      .+..+...+.+..|||||+.|+..+.+   ..|.+||+.+++... +....+......|+|||+.|+.. +.+|  .|++
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence            444556678899999999998876543   258899998876422 22223334578999999988754 4555  4888


Q ss_pred             EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEe-CCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec
Q 010470          294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  370 (510)
                      ||+.+++.. .+..+........|+| ++..++..+ .++  .|.++|+.++...............+|+|||++|+..+
T Consensus       291 ~dl~tg~~~-~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        291 VDIATKALT-RITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             EECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence            888877654 4444555667789999 666555444 333  57777887776543322222234578999999988654


Q ss_pred             C-CC--cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEee
Q 010470          371 I-DG--NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       371 ~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~  433 (510)
                      . ++  .|.++|+.++... .+...  .......|+|+|+.|+..+.+ +  .+.+++.. +.....+.
T Consensus       369 ~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~  433 (448)
T PRK04792        369 RTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLP  433 (448)
T ss_pred             ecCCceEEEEEECCCCCeE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc
Confidence            4 33  4667888777643 23222  122345799999988776544 3  36667764 44444443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.49  E-value=3.3e-10  Score=99.35  Aligned_cols=263  Identities=18%  Similarity=0.271  Sum_probs=173.3

Q ss_pred             CCeEEEEeCCCC--cc-eecccccccceeEEEEecCCCEEEEEeC---CCeEEEEEcCC--CCee--EeecCCCCceEEE
Q 010470          246 DKSIKLWDTNTG--SL-SSTLYGCLGSVLDLAITHDNRSVIAASS---SNNLYVWDVNS--GRVR--HTLTGHTDKVCAV  315 (510)
Q Consensus       246 dg~i~iwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~--~~~~--~~~~~~~~~v~~i  315 (510)
                      +.-|.+|++++.  +. ...+....+.++-++|+|+++.|+++..   +|.|..|.++.  |+..  ........+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            456999998742  22 2223356778899999999999998864   46777777664  5432  2222233444789


Q ss_pred             EEecCCCCEEEEEeC-CCcEEEEECCC-CeE---eeeeeecCc----------eeEEEEcCCCCEEEEec-CCCcEEEEE
Q 010470          316 DVSKISSRHVVSAAY-DRTLKVWDLHK-GYC---VNTIIFHSN----------CNALAFSMDGQTIFSGH-IDGNLRLWD  379 (510)
Q Consensus       316 ~~~~~~~~~l~s~~~-dg~i~iwd~~~-~~~---~~~~~~~~~----------i~~i~~~~~~~~l~~~~-~dg~i~i~d  379 (510)
                      ++++ ++.+++++.. .|.|.++-+.. |..   +..+.+...          +.+..+.|+++++++.+ .--.|.+|+
T Consensus        95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence            9988 7777777665 58999998865 332   222322222          78899999999998764 233799999


Q ss_pred             CCCCceeee--ecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCc----eeeeEeecCCC--eeecCceeEEEcC
Q 010470          380 IQTGKLLSE--VAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSL----EVCGSLRATGN--RVASNWSRSCISP  450 (510)
Q Consensus       380 ~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~----~~~~~~~~~~~--~~~~~~~~~~~s~  450 (510)
                      +..|+....  .........+-|.|+|++++.++.+ -+++|.+|.....    +.++.+.....  .-......+.+++
T Consensus       174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            987754321  1223337889999999999887655 5789999988763    22222221111  1112334578999


Q ss_pred             CCCEEEEEcC-CCeEEEEeCCCc-ce---eecccccCcCEEEEEEeCCCCcEEEeeCCC-eEEEc
Q 010470          451 DESYVAAGSA-DGSVYIWSISKA-DI---VRTLKEHTAPVLSCSWSGLGKPLASADKNG-VVCVW  509 (510)
Q Consensus       451 ~~~~l~~~~~-dg~i~iwd~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~iw  509 (510)
                      ||++|+++.. ...|.+|.+... ..   +.....+......+.|+|+|++|++++.++ .|.+|
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            9999998764 347888887653 22   222333555578999999999998887653 45554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.48  E-value=5.9e-11  Score=125.54  Aligned_cols=236  Identities=12%  Similarity=0.080  Sum_probs=158.1

Q ss_pred             eEEEEecC-CCEEEEEeCCCeEEEEEcCCCCeeEeecC--------------CCCceEEEEEecCCCCEEEE-EeCCCcE
Q 010470          271 LDLAITHD-NRSVIAASSSNNLYVWDVNSGRVRHTLTG--------------HTDKVCAVDVSKISSRHVVS-AAYDRTL  334 (510)
Q Consensus       271 ~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------~~~~v~~i~~~~~~~~~l~s-~~~dg~i  334 (510)
                      ..++++++ +..+++-+.++.|++||.. +..+..+.+              .-....++++.+ +++.|++ -..++.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            46888875 5566666778899999975 554444332              112357888988 5555444 4456789


Q ss_pred             EEEECCCCeEeeeeee------------------cCceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeeccc---
Q 010470          335 KVWDLHKGYCVNTIIF------------------HSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---  392 (510)
Q Consensus       335 ~iwd~~~~~~~~~~~~------------------~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---  392 (510)
                      +++|+.++.. .++..                  -..+..++++| ++..+++.+.++.|++||..++.... +...   
T Consensus       649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~  726 (1057)
T PLN02919        649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE  726 (1057)
T ss_pred             EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence            9999877653 33311                  12356899999 56667777888999999987765432 1110   


Q ss_pred             -----------ccccEEEEEEcCCCCE-EEEEecCCcEEEEEcCCceeeeEeecC-------------CC----eeecCc
Q 010470          393 -----------SLAAVTSISLSRSGNI-ILTSGRDNLHNLFDIRSLEVCGSLRAT-------------GN----RVASNW  443 (510)
Q Consensus       393 -----------~~~~i~~i~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~----~~~~~~  443 (510)
                                 ....+..|+++|+|.. +++.+.++.|++||+.++.......+.             ..    ......
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence                       1134677999999984 455566789999999876532111000             00    001123


Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc-------------ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          444 SRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK-------------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       444 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..++++++|+++++.+.+++|++||..++.......             +.-....+++++++|+.+++.+.++.|++||
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            458899999999999999999999988776542221             1223578999999999888888999999996

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.47  E-value=2e-11  Score=110.95  Aligned_cols=273  Identities=13%  Similarity=0.118  Sum_probs=184.7

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC--------------
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS--------------  288 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------  288 (510)
                      .-.-++..++|||.|.+|++....| |.+|+-..+..+..+.  ...|..+.|+|+++||.+-+..              
T Consensus        30 ~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          30 SENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             ccCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence            3556899999999999999887654 9999887776544443  4578999999999999987643              


Q ss_pred             -CeEEEEEcCCCCeeEeecCCCCc--eE-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEee-eee--ecCceeEEEEcC
Q 010470          289 -NNLYVWDVNSGRVRHTLTGHTDK--VC-AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN-TII--FHSNCNALAFSM  361 (510)
Q Consensus       289 -~~i~iwd~~~~~~~~~~~~~~~~--v~-~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~--~~~~i~~i~~~~  361 (510)
                       +.+.+||..+|..+..+.+...+  .+ -+.|+- ++.+++-. ....++|+++ ++.... .+.  ....+....|+|
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP  183 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP  183 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence             35999999999999998876666  44 567776 55555443 3457999997 332211 111  124588899998


Q ss_pred             CC--CEEEE-----ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe-----------cCCcEEEEEc
Q 010470          362 DG--QTIFS-----GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG-----------RDNLHNLFDI  423 (510)
Q Consensus       362 ~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-----------~d~~i~i~d~  423 (510)
                      .|  ..|+.     ++..+.+++|.+..+..+....... ..-..+.|.+.|.++++--           ....++++++
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~  262 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI  262 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence            54  34443     5667889999998777665544433 3344588999999876431           1246777877


Q ss_pred             CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE--cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEee
Q 010470          424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG--SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASAD  501 (510)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  501 (510)
                      ....+.-.. ....+    +...+|.|.++.+++.  -.+-.+.++|+... +...+  ....=+.+.|+|.+++++.+|
T Consensus       263 ~e~~i~V~~-~~~~p----Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         263 TERSIPVEK-DLKDP----VHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             cccccceec-ccccc----ceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEec
Confidence            633322211 22233    3348999988876654  46788999998765 33333  234446778888888888866


Q ss_pred             CC---CeEEEcC
Q 010470          502 KN---GVVCVWT  510 (510)
Q Consensus       502 ~d---g~i~iwd  510 (510)
                      -|   |.+-+||
T Consensus       335 F~nl~gni~i~~  346 (561)
T COG5354         335 FDNLQGNIEIFD  346 (561)
T ss_pred             CCccccceEEec
Confidence            55   5566664

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=7.2e-10  Score=97.26  Aligned_cols=265  Identities=13%  Similarity=0.206  Sum_probs=174.4

Q ss_pred             cccccceEEEEEecCCCEEEEeeCC---CeEEEEeCCC--Ccc--eecccccccceeEEEEecCCCEEEEEeC-CCeEEE
Q 010470          222 NAHEGGCASILFEYNSARLISGGQD---KSIKLWDTNT--GSL--SSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYV  293 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i  293 (510)
                      -.+.+.++-++|+|++++|.++..+   |.|-.|.++.  |..  +........+.+.++++++|++++++.. .|.|.+
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v  115 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV  115 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence            3566788999999999999888654   6777777654  544  2222233344488999999999999984 579999


Q ss_pred             EEcCC-CCeeEe--ecCCCCc----------eEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeee----eeecCcee
Q 010470          294 WDVNS-GRVRHT--LTGHTDK----------VCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNT----IIFHSNCN  355 (510)
Q Consensus       294 wd~~~-~~~~~~--~~~~~~~----------v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~----~~~~~~i~  355 (510)
                      +-+.. |.+...  ...|.+.          +....+.| +++++++.+- -..|.+|++..|.....    +.....+.
T Consensus       116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             EEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            99865 432221  2224444          88889999 7778777653 34799999987764332    23445689


Q ss_pred             EEEEcCCCCEEEEec-CCCcEEEEECCCC--c--eeeeecc-----cccccEEEEEEcCCCCEEEEEecC-CcEEEEEcC
Q 010470          356 ALAFSMDGQTIFSGH-IDGNLRLWDIQTG--K--LLSEVAA-----HSLAAVTSISLSRSGNIILTSGRD-NLHNLFDIR  424 (510)
Q Consensus       356 ~i~~~~~~~~l~~~~-~dg~i~i~d~~~~--~--~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d-~~i~i~d~~  424 (510)
                      .|.|+|++++..+.+ -+++|.+|.....  +  .++.+..     ........|.++|+|++|+++.+. ..|.+|.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            999999999887654 5889999988763  2  1222111     112567889999999999998754 467777765


Q ss_pred             C--ceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCC-CeEEEEeCC--Ccceeeccc-ccCcCEEEEEEe
Q 010470          425 S--LEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSAD-GSVYIWSIS--KADIVRTLK-EHTAPVLSCSWS  491 (510)
Q Consensus       425 ~--~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~-~~~~~v~~~~~~  491 (510)
                      .  ++..  .....++..    .....|+++|++|++.+.+ ..|.+|.++  +|++-.... .......|+.|.
T Consensus       275 ~~~g~L~~~~~~~teg~~----PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         275 PDGGKLELVGITPTEGQF----PRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCCCEEEEEEEeccCCcC----CccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            3  3221  112222221    2236789999999988865 468888765  454433322 133344566664

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.46  E-value=2.6e-11  Score=102.63  Aligned_cols=256  Identities=19%  Similarity=0.242  Sum_probs=168.0

Q ss_pred             CCeEEEEeCCCCccee--cc-cccccceeEEEEec---CCC-EEEEEeCCCeEEEEEcCCCCeeEeecCCCC------ce
Q 010470          246 DKSIKLWDTNTGSLSS--TL-YGCLGSVLDLAITH---DNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHTD------KV  312 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~--~~-~~~~~~v~~~~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~v  312 (510)
                      .|.+.+|++...+...  ++ ......+..+.|..   +|. .++-+...|.|.+|..........+.+-..      ..
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            4678899887665433  11 12344566677743   344 456667789999998765444444433211      24


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee--eeeec-CceeEEEEcC-CCCEEEEecCCCcEEEEECC-CCceee
Q 010470          313 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN--TIIFH-SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQ-TGKLLS  387 (510)
Q Consensus       313 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~-~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~  387 (510)
                      .++.|++ .+..++++..+|.+.+-+........  ....| -.+....|+. +.+.+++|+.||.+..||+| .++.+.
T Consensus       125 lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  125 LSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            5678888 67778888889999866654443332  44444 3466677765 45688899999999999999 344444


Q ss_pred             e-ecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCC--CCEEEEEcCCC
Q 010470          388 E-VAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPD--ESYVAAGSADG  462 (510)
Q Consensus       388 ~-~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg  462 (510)
                      . ...|+ ..|.+|.-+| .+.++++|+.|..|++||.|+ ++++..-     .+...+.++..+|.  +..++++-.+|
T Consensus       204 ~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-----~v~GGVWRi~~~p~~~~~lL~~CMh~G  277 (339)
T KOG0280|consen  204 HNSKVHT-SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-----KVGGGVWRIKHHPEIFHRLLAACMHNG  277 (339)
T ss_pred             ecceeee-cceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-----ccccceEEEEecchhhhHHHHHHHhcC
Confidence            4 33444 8899998876 577999999999999999995 4443322     23345666888884  44566666666


Q ss_pred             eEEEEeCCCcc-----eeecccccCcCEEEEEEeCCCCcEEEee-CCCeEE-Ec
Q 010470          463 SVYIWSISKAD-----IVRTLKEHTAPVLSCSWSGLGKPLASAD-KNGVVC-VW  509 (510)
Q Consensus       463 ~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~-iw  509 (510)
                       .+|-+...+.     .+...+.|.+-+.+-.|......|+||+ .|+.++ +|
T Consensus       278 -~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  278 -AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             -ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence             7788776543     3344566777777777755445688865 466644 66

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=5.7e-11  Score=114.28  Aligned_cols=209  Identities=12%  Similarity=0.100  Sum_probs=130.7

Q ss_pred             eccccccceEEEEEecCCCEE---EEeeCCC--eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC-CC----
Q 010470          220 KINAHEGGCASILFEYNSARL---ISGGQDK--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SN----  289 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~~~~l---~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----  289 (510)
                      .+......+.+-.|||||+.+   ++...+|  .|.+.++.++.... +....+......|+|||+.|+..+. +|    
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di  257 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDL  257 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence            344455567788999999752   2444343  57888888775432 2333445567899999998887653 22    


Q ss_pred             eEEEEEcCCC---CeeEeecCCCCceEEEEEecCCCCEEEEEe-CCCcEEEE--ECCC-CeEeeeeee-cCceeEEEEcC
Q 010470          290 NLYVWDVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVW--DLHK-GYCVNTIIF-HSNCNALAFSM  361 (510)
Q Consensus       290 ~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iw--d~~~-~~~~~~~~~-~~~i~~i~~~~  361 (510)
                      .+.+|++..+   ........+........|+| ++..|+..+ .+|...+|  ++.. +.....+.. ...+....|+|
T Consensus       258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP  336 (428)
T PRK01029        258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP  336 (428)
T ss_pred             eEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence            3444776653   33333333334456789999 676655544 46654454  5432 222333332 23467889999


Q ss_pred             CCCEEEEecCC---CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec---CCcEEEEEcCCceeeeEe
Q 010470          362 DGQTIFSGHID---GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR---DNLHNLFDIRSLEVCGSL  432 (510)
Q Consensus       362 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~  432 (510)
                      ||+.|+..+.+   ..|.+||+.+++... +.... ..+....|+|||+.|+....   ...|.++|+.+++.....
T Consensus       337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        337 DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSP-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            99988865432   369999998887543 33222 45678999999998875443   346888898877654444

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.2e-10  Score=111.15  Aligned_cols=212  Identities=16%  Similarity=0.152  Sum_probs=160.5

Q ss_pred             CCCccceeeccccccceEEEEEecCC------------CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecC-
Q 010470          212 TVPSTCKHKINAHEGGCASILFEYNS------------ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD-  278 (510)
Q Consensus       212 ~~~~~~~~~~~~h~~~v~~~~~s~~~------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-  278 (510)
                      ....+.+..+.-|...|+.+.|.|-.            -+||++...|.|.+||...+..+..+..|..++.+++|-+. 
T Consensus        42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r  121 (1062)
T KOG1912|consen   42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR  121 (1062)
T ss_pred             hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc
Confidence            34566778889999999999998732            25778888899999999999998999999999999999663 


Q ss_pred             --C-CEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-------CeEeeee
Q 010470          279 --N-RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-------GYCVNTI  348 (510)
Q Consensus       279 --~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~  348 (510)
                        . ..|++-.....+.+|+..+|+....+........|+.+.|.+...+...+..|.+.+.+.-.       |+..+..
T Consensus       122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~  201 (1062)
T KOG1912|consen  122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT  201 (1062)
T ss_pred             CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence              3 45666677889999999999999998877788889999999888888888888888876531       2222111


Q ss_pred             eecCc--------------------------eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEE
Q 010470          349 IFHSN--------------------------CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISL  402 (510)
Q Consensus       349 ~~~~~--------------------------i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~  402 (510)
                      ..++.                          +..++|+|.-+.++.......+.++|++-..++..+.... +.+.-+.+
T Consensus       202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier-~~akfv~v  280 (1062)
T KOG1912|consen  202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER-GGAKFVDV  280 (1062)
T ss_pred             cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc-CCcceeEe
Confidence            11100                          2235667766655555566789999998888877777665 55666677


Q ss_pred             cCCC--CEEEEEecCCcEEEEEcC
Q 010470          403 SRSG--NIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       403 ~~~~--~~l~~~~~d~~i~i~d~~  424 (510)
                      -|++  ..|++...||.+.+|-.+
T Consensus       281 lP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  281 LPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             ccCCCcceEEEEecCCeEEEEEee
Confidence            6665  478899999999888654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.42  E-value=3.9e-11  Score=101.54  Aligned_cols=198  Identities=17%  Similarity=0.179  Sum_probs=140.9

Q ss_pred             cceEEEEEec---CCC-EEEEeeCCCeEEEEeCCCCcceecccccc------cceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          226 GGCASILFEY---NSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCL------GSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       226 ~~v~~~~~s~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      ..+..+.|..   +|. .++-+..+|.|.+|..........+.+-.      ....++.|++.+..++++..+|.+.+-+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~  149 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY  149 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence            3466666653   455 56667778999999765433322222211      1245788999999999999999998666


Q ss_pred             cCCCCee--EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEeee--eeecCceeEEEEcC-CCCEEEEe
Q 010470          296 VNSGRVR--HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNT--IIFHSNCNALAFSM-DGQTIFSG  369 (510)
Q Consensus       296 ~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~--~~~~~~i~~i~~~~-~~~~l~~~  369 (510)
                      .......  +.++.|.-+.+...|+..+++++++||.|+.+..||++ .++.+..  ..+...|.+|.-+| .+.+|++|
T Consensus       150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG  229 (339)
T KOG0280|consen  150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG  229 (339)
T ss_pred             cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence            5555443  47889999999999998888999999999999999999 3333333  23345688888876 67899999


Q ss_pred             cCCCcEEEEECC-CCceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCC
Q 010470          370 HIDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       370 ~~dg~i~i~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~  425 (510)
                      +.|-.|++||.| .++++..-...  +.|..+.++|.-. .+++++.-+-.+|.+...
T Consensus       230 sYDe~i~~~DtRnm~kPl~~~~v~--GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~  285 (339)
T KOG0280|consen  230 SYDECIRVLDTRNMGKPLFKAKVG--GGVWRIKHHPEIFHRLLAACMHNGAKILDSSD  285 (339)
T ss_pred             ccccceeeeehhcccCccccCccc--cceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence            999999999999 46776655544  8999999999533 233333333455666553

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=1.1e-12  Score=120.08  Aligned_cols=239  Identities=17%  Similarity=0.294  Sum_probs=169.5

Q ss_pred             ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCc
Q 010470          261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT  333 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~  333 (510)
                      ..+.||...|..++--.+.+.+++++.|++|++|.+..       ..+..++..|..+|.++.|.. +.++++++  ||.
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGG  805 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCc
Confidence            45678888888888777888899999999999999863       237778899999999999987 66666655  799


Q ss_pred             EEEEECCCCeEeeeeee---cCceeEEEEcC--CCCEEEEe-cCCCcEEEEECCCCceeeeeccc----ccccEEEEEEc
Q 010470          334 LKVWDLHKGYCVNTIIF---HSNCNALAFSM--DGQTIFSG-HIDGNLRLWDIQTGKLLSEVAAH----SLAAVTSISLS  403 (510)
Q Consensus       334 i~iwd~~~~~~~~~~~~---~~~i~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~i~~~  403 (510)
                      |.+||.--++.+..+..   ++.+..+..-|  +...++.| +...+|+++|.+.+.....++..    ...-+.++++.
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            99999987776654432   23333344334  34445544 67889999999998776665432    22568999999


Q ss_pred             CCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEE-EeCCCcceeecccccC
Q 010470          404 RSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI-WSISKADIVRTLKEHT  482 (510)
Q Consensus       404 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~  482 (510)
                      +.|+.++++-.+|+|.+.|.++|..+..++...-....    + -.|..+.++....|.++.| |...+|......+...
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllq----l-aapsdq~L~~saldHslaVnWhaldgimh~q~kppp  960 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQ----L-AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP  960 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhh----h-cCchhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence            99999999999999999999999988776544332221    2 2577788888888999999 9877776555544322


Q ss_pred             cCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          483 APVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       483 ~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      .+..-+  -.-|..|+++.....+.+|
T Consensus       961 epahfl--qsvgpSLV~a~~Gn~lgVY  985 (1034)
T KOG4190|consen  961 EPAHFL--QSVGPSLVTAQNGNILGVY  985 (1034)
T ss_pred             cchhhh--hccCceeEEeccCcEEEEE
Confidence            221111  1124455555555455544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=3.9e-12  Score=131.22  Aligned_cols=222  Identities=16%  Similarity=0.275  Sum_probs=162.6

Q ss_pred             ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470          265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY  343 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~  343 (510)
                      .+-..|.++.-+|...+.++|+.||.|++|....+..+..+. .....|+.+.|+. .|+.+..+..||.+.+|.+. .+
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Cc
Confidence            345677788888999999999999999999998888776664 2347899999998 78888888889999999986 44


Q ss_pred             EeeeeeecC-ceeEEEEcCCCCEEEEe---cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEE
Q 010470          344 CVNTIIFHS-NCNALAFSMDGQTIFSG---HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN  419 (510)
Q Consensus       344 ~~~~~~~~~-~i~~i~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~  419 (510)
                      +......|. ....+.|-.  ..+++.   +.++++.+||.--.....-+...+.+.++++++-|....|++|+.+|.|.
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred             ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence            444444443 356666653  445543   35789999997533222222233348999999999999999999999999


Q ss_pred             EEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-c--CcC--E--EEEEEeC
Q 010470          420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-H--TAP--V--LSCSWSG  492 (510)
Q Consensus       420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~--~~~--v--~~~~~~~  492 (510)
                      +||++..+..+.+..             +. ...+|++|+..|.++||++.....+.+++. |  .+-  +  ..+-. .
T Consensus      2362 l~D~rqrql~h~~~~-------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v-~ 2426 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA-------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINV-G 2426 (2439)
T ss_pred             EeehHHHHHHHHhhh-------------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeee-c
Confidence            999998777666543             23 567899999999999999998887777754 2  111  0  11222 2


Q ss_pred             CCCcEEEeeCCCe
Q 010470          493 LGKPLASADKNGV  505 (510)
Q Consensus       493 ~~~~l~s~~~dg~  505 (510)
                      .++.|.+|+.||+
T Consensus      2427 ~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2427 QCNRIFSCGADGT 2439 (2439)
T ss_pred             cCceEEEecCCCC
Confidence            2456888888874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=1.4e-11  Score=116.21  Aligned_cols=234  Identities=15%  Similarity=0.177  Sum_probs=167.2

Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---------------eeEeecCCCCceEEEEEecCCCCEEEEEeC
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---------------VRHTLTGHTDKVCAVDVSKISSRHVVSAAY  330 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~  330 (510)
                      ......|+.|+....++++|+.||.+++..+.+..               .-+++.||...|..+.|+. ....+-++..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence            34567899999999999999999999999876431               2346789999999999987 7788999999


Q ss_pred             CCcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCC
Q 010470          331 DRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN  407 (510)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~  407 (510)
                      +|.|.+|-+-.|.........   +-|.+++|+.+|..++....||.|.+=.+. |..+.--.... .....+.|++|..
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg-~~l~hv~ws~D~~  169 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKG-QLLAHVLWSEDLE  169 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcch-heccceeecccHH
Confidence            999999998877655444333   448999999999999999999999887764 33332222211 3455789999999


Q ss_pred             EEEEEecCCcEEEEEcCCcee-----ee--EeecCCCeeecCceeEEE--------cCCCCEEEEEcCCCeEEEEeCCCc
Q 010470          408 IILTSGRDNLHNLFDIRSLEV-----CG--SLRATGNRVASNWSRSCI--------SPDESYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       408 ~l~~~~~d~~i~i~d~~~~~~-----~~--~~~~~~~~~~~~~~~~~~--------s~~~~~l~~~~~dg~i~iwd~~~~  472 (510)
                      .++.+-.+|.+.+||....-.     ..  ...+........+..++|        -|+-..++++-.+|.+.|..-.+.
T Consensus       170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND  249 (1189)
T KOG2041|consen  170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND  249 (1189)
T ss_pred             HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence            999999999999999753210     00  000000000011112332        468889999999999988865443


Q ss_pred             ceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          473 DIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       473 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      .....+. ..-.+.+..|+++|..|+.||.+
T Consensus       250 ~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  250 PEPVVVD-TGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             CCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence            3222222 22568899999999999999865

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=5e-12  Score=119.59  Aligned_cols=280  Identities=15%  Similarity=0.252  Sum_probs=187.4

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCC-CCcceeccc-ccccceeEEEEecC--CCEEEEEeCCCeEEEEEcCC--
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTN-TGSLSSTLY-GCLGSVLDLAITHD--NRSVIAASSSNNLYVWDVNS--  298 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~--  298 (510)
                      .+++.++.++|.|+-++.++.-| +.+.|+. .+.+..-+. ...-.|-.+.|+|.  -.+.++......-.+|++..  
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            46788999999999999999877 4455554 344333322 12234566778765  34666666667778998853  


Q ss_pred             -CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-Eeeeee-ecCceeEEEEcCCCCEEEEecCCCcE
Q 010470          299 -GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTII-FHSNCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       299 -~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                       ......+.+|...|+.+.|+|.....+++++.|-.+..||+++.. ++..+. -+.....+.|+.....+.+.+....|
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence             335566789999999999999888999999999999999998753 333332 34557789998754445555556789


Q ss_pred             EEEECCCCc-eeeeecccccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          376 RLWDIQTGK-LLSEVAAHSLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       376 ~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      ++||.+.|. ++..++.+. ..+.++.|..- ...+.+++.|++|+.||..+.........   ....++..-++-|-|.
T Consensus       183 ~vwd~r~gs~pl~s~K~~v-s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v---tt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHV-SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV---TTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             EEEeccCCCcceEEecccc-eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec---cccCcceeccccccCc
Confidence            999999864 555666654 78888888753 44678899999999999875332111111   1111222234445333


Q ss_pred             --EEEEEcCCCeEEEE---------eCCC-cceeecccccCcCEEEEEEeCCC----------CcEEEeeCCCeEEEc
Q 010470          454 --YVAAGSADGSVYIW---------SISK-ADIVRTLKEHTAPVLSCSWSGLG----------KPLASADKNGVVCVW  509 (510)
Q Consensus       454 --~l~~~~~dg~i~iw---------d~~~-~~~~~~~~~~~~~v~~~~~~~~~----------~~l~s~~~dg~i~iw  509 (510)
                        ++.---.+..|.++         +..+ ..++.++.||...|..+-|-..+          -.|+|-+.|..+++|
T Consensus       259 g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  259 GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             eeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence              22211112234444         3333 46788999999988877774322          269999999999999

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.37  E-value=5.8e-10  Score=107.15  Aligned_cols=256  Identities=13%  Similarity=0.144  Sum_probs=168.0

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCce----
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV----  312 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v----  312 (510)
                      +..++.++.+|.+..+|..+|+.+...............  .+..+++++.++.+..+|..+|+.+..+......+    
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            457778888999999999999987766543221111222  24567778889999999999999888776431111    


Q ss_pred             -EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--------eeEEEEcC--CCCEEEEecCCCcEEEEECC
Q 010470          313 -CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--------CNALAFSM--DGQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       313 -~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------i~~i~~~~--~~~~l~~~~~dg~i~i~d~~  381 (510)
                       .+...   .+..++.++.+|.+..+|..+|+.+.......+        ...+..+|  .+..+++++.+|.+..+|..
T Consensus       198 ~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        198 ESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             CCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence             11111   124566777899999999999987766543211        11111222  35567777789999999999


Q ss_pred             CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470          382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD  461 (510)
Q Consensus       382 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  461 (510)
                      +|+.+.......   ...+.  ..+..+++++.+|.+..+|..+++.+............   ...+  .+.+|+.++.+
T Consensus       275 tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~---sp~v--~~g~l~v~~~~  344 (394)
T PRK11138        275 SGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT---APVL--YNGYLVVGDSE  344 (394)
T ss_pred             CCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCccc---CCEE--ECCEEEEEeCC
Confidence            998876654321   11222  24677888889999999999998775544321111111   1112  35678889999


Q ss_pred             CeEEEEeCCCcceeecccccCcCEE-EEEEeCCCCcEEEeeCCCeEEEc
Q 010470          462 GSVYIWSISKADIVRTLKEHTAPVL-SCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       462 g~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      |.|+++|..+|+.+...+.....+. ...+  .+..|+.++.||.|+.+
T Consensus       345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~  391 (394)
T PRK11138        345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAI  391 (394)
T ss_pred             CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence            9999999999998877654333332 2233  24478888999998875

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=5.2e-12  Score=130.33  Aligned_cols=198  Identities=14%  Similarity=0.245  Sum_probs=159.8

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR  300 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  300 (510)
                      +.|-..|.++.-+|.-.+.+||+.||.|++|....+..+..+. .....|+.+.|+.+|+.+..+..||.+.+|... .+
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence            3344567888888888899999999999999998887766554 234889999999999999999999999999976 67


Q ss_pred             eeEeecCCCCceEEEEEecCCCCEEEEEe---CCCcEEEEECCCC---eEeeeeeecCceeEEEEcCCCCEEEEecCCCc
Q 010470          301 VRHTLTGHTDKVCAVDVSKISSRHVVSAA---YDRTLKVWDLHKG---YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGN  374 (510)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~---~dg~i~iwd~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~  374 (510)
                      +....+.|+.....+.|..   ..+++++   .++.+.+||..-.   .++. ..+.+.++++++-|....|++|+.+|.
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred             ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc
Confidence            7777888998888888864   5566654   4689999997532   2333 334466999999999999999999999


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRAT  435 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  435 (510)
                      |++||++..+....+..          ++ ...++++++..|.++||++.....+..+...
T Consensus      2360 v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             EEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence            99999998877766654          33 5678999999999999999988777766543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.37  E-value=2e-09  Score=111.95  Aligned_cols=278  Identities=14%  Similarity=0.161  Sum_probs=182.5

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEE----eCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLW----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG  299 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  299 (510)
                      ..+.|.++.|-++...++.+..+|.|.++    +..+... ...-.-...|.+++||||+..|+..+.++++.+.+-. .
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f  151 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F  151 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence            45689999999999999999999999999    5443332 2222346789999999999999999999988776421 1


Q ss_pred             Ce----------------e--------EeecC------------------------CCCceEEEEEecCCCCEEEEEeC-
Q 010470          300 RV----------------R--------HTLTG------------------------HTDKVCAVDVSKISSRHVVSAAY-  330 (510)
Q Consensus       300 ~~----------------~--------~~~~~------------------------~~~~v~~i~~~~~~~~~l~s~~~-  330 (510)
                      .+                +        ..|.|                        +.+.-..|+|-. |+.+|++.+. 
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~  230 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVE  230 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEE
Confidence            10                0        01110                        223445688877 8888888764 


Q ss_pred             -----CCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecC---CCcEEEEECCCCceeeeecc---cccccEE
Q 010470          331 -----DRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHI---DGNLRLWDIQTGKLLSEVAA---HSLAAVT  398 (510)
Q Consensus       331 -----dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~---~~~~~i~  398 (510)
                           -+.++||+-+ |....+...-.. -.+++|.|.|++|++...   ...|.+|. ++|-.-..|..   +....|.
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceee
Confidence                 2579999965 654433332222 468999999999997654   34677787 45544444433   2336899


Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE--eecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeC----CC
Q 010470          399 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS--LRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSI----SK  471 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~----~~  471 (510)
                      .+.|++++..|+....|. |.+|-..+..-..+  +.......   ...+.|+|. ...|...+.+|.+..++.    ..
T Consensus       309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~---~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~  384 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES---VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR  384 (928)
T ss_pred             EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC---CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence            999999999999977555 99999887554322  22221111   112678884 334555655565554432    11


Q ss_pred             cc--------eeec----------c-----c--------ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          472 AD--------IVRT----------L-----K--------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       472 ~~--------~~~~----------~-----~--------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +.        .+..          +     +        .-..+|.+++|++++..+++-..||.|.+|.
T Consensus       385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence            10        0111          1     0        1346799999999988899999999998873

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.37  E-value=6.3e-11  Score=101.07  Aligned_cols=241  Identities=13%  Similarity=0.237  Sum_probs=160.3

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-----ceecccccc------------cceeEEEEecCC--CEEEEEe
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGS-----LSSTLYGCL------------GSVLDLAITHDN--RSVIAAS  286 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~~  286 (510)
                      ..|+++.|...|.||++|...|.|.+|.-+...     ....+++|.            ..|..+.|..++  ..++..+
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst  106 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST  106 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence            469999999999999999999999999765432     233355553            357778886654  3578888


Q ss_pred             CCCeEEEEEcCCCC------------------------------------------eeEee-cCCCCceEEEEEecCCCC
Q 010470          287 SSNNLYVWDVNSGR------------------------------------------VRHTL-TGHTDKVCAVDVSKISSR  323 (510)
Q Consensus       287 ~d~~i~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~i~~~~~~~~  323 (510)
                      .|.+|++|.+....                                          +.+.+ ..|...+.++.++. +..
T Consensus       107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~e  185 (460)
T COG5170         107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKE  185 (460)
T ss_pred             CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chh
Confidence            99999999875320                                          00111 35667788888887 666


Q ss_pred             EEEEEeCCCcEEEEECCCCe---Eeeeeeec------CceeEEEEcCC-CCEEEEecCCCcEEEEECCCCce------ee
Q 010470          324 HVVSAAYDRTLKVWDLHKGY---CVNTIIFH------SNCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKL------LS  387 (510)
Q Consensus       324 ~l~s~~~dg~i~iwd~~~~~---~~~~~~~~------~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~------~~  387 (510)
                      .++++. |-.|.+|++.-..   .+-.+..+      .-|++..|+|. .+.+.-.+..|.|++.|++....      +.
T Consensus       186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            666665 7889999986322   12222222      12788999994 45666677889999999984321      11


Q ss_pred             ee---------cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC-ceeeeEeecCCCe-----------eecCceeE
Q 010470          388 EV---------AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS-LEVCGSLRATGNR-----------VASNWSRS  446 (510)
Q Consensus       388 ~~---------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~-----------~~~~~~~~  446 (510)
                      ..         ...-...|..+.|+++|+++++-+. .+++|||.+. ..++.++..+...           ....-..+
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei  343 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI  343 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence            11         0111257889999999999987644 4899999985 4455555433211           01112336


Q ss_pred             EEcCCCCEEEEEcCCCeEEEEeC
Q 010470          447 CISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       447 ~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      .||.|...+.+|+..+..-||-+
T Consensus       344 sfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         344 SFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EecCCcccccccccccceeeecc
Confidence            78888888888888777767653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.37  E-value=9.8e-10  Score=98.09  Aligned_cols=219  Identities=21%  Similarity=0.233  Sum_probs=146.1

Q ss_pred             CCeEEEEeCCCCcceecccccccceeEEE--EecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC
Q 010470          246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLA--ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR  323 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  323 (510)
                      +|.|..||..+|+.+..... ........  ..+++..+++++.++.++.||..+|+.+..+.. ...+......  .+.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETT
T ss_pred             CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--ccc
Confidence            68899999999988777643 11122222  334677788889999999999999998887764 2222111111  356


Q ss_pred             EEEEEeCCCcEEEEECCCCeEeeee-eecCc----eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc---
Q 010470          324 HVVSAAYDRTLKVWDLHKGYCVNTI-IFHSN----CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA---  395 (510)
Q Consensus       324 ~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~----i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---  395 (510)
                      .++.++.++.+..+|..+|+.+... ....+    ........++..++++..+|.|..+|+++|+.+.........   
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence            6677778889999999999998884 33211    122223334888888888999999999999998877663311   


Q ss_pred             c------EEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          396 A------VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       396 ~------i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      .      +.+-.+..++ .++.++.++.+.-+|+.+++...... ... ..     ....+++..|++++.++.|..||+
T Consensus       158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~-~~-----~~~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG-IY-----SLPSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS--EC-----ECEECCCTEEEEEETTTEEEEEET
T ss_pred             ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC-cc-----CCceeeCCEEEEEeCCCEEEEEEC
Confidence            1      1222222344 77777777754444999998654322 222 11     124567888888889999999999


Q ss_pred             CCcceee
Q 010470          470 SKADIVR  476 (510)
Q Consensus       470 ~~~~~~~  476 (510)
                      .+|+.+.
T Consensus       230 ~tG~~~W  236 (238)
T PF13360_consen  230 KTGKVVW  236 (238)
T ss_dssp             TTTEEEE
T ss_pred             CCCCEEe
Confidence            9998764

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.35  E-value=6.4e-09  Score=93.04  Aligned_cols=218  Identities=15%  Similarity=0.160  Sum_probs=143.8

Q ss_pred             EEEEec-CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee
Q 010470          272 DLAITH-DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF  350 (510)
Q Consensus       272 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  350 (510)
                      +++|.+ ++.++++....+.|+.|+..++.... +....  ..++.+...+ ..++.+.. +.+.++|+.+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEeec
Confidence            578998 56656665678999999988775433 22222  6677777324 55555554 4556669998866554443


Q ss_pred             ------cCceeEEEEcCCCCEEEEecCC--------CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEE-EEecC
Q 010470          351 ------HSNCNALAFSMDGQTIFSGHID--------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIIL-TSGRD  415 (510)
Q Consensus       351 ------~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d  415 (510)
                            ...++.+++.|+|++.++....        |.|+.++.. ++.......-  ...+.|+|+|+++.|+ +.+..
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~--~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL--GFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--SSEEEEEEETTSSEEEEEETTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc--ccccceEECCcchheeeccccc
Confidence                  1238999999999977765433        568888876 5544333332  6789999999999775 56677


Q ss_pred             CcEEEEEcCCce--e--eeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEE
Q 010470          416 NLHNLFDIRSLE--V--CGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW  490 (510)
Q Consensus       416 ~~i~i~d~~~~~--~--~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  490 (510)
                      +.|..|++....  .  ...+ ......  .....++++.+|++.++....+.|.+++.. |+.+..+......+++++|
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~--g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGP--GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSS--CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCC--cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            889999986321  1  1122 111111  112348999999998888888999999976 8888877766568999999


Q ss_pred             e-CCCCcEEEe
Q 010470          491 S-GLGKPLASA  500 (510)
Q Consensus       491 ~-~~~~~l~s~  500 (510)
                      . ++.+.|+..
T Consensus       233 gg~~~~~L~vT  243 (246)
T PF08450_consen  233 GGPDGKTLYVT  243 (246)
T ss_dssp             ESTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            5 665655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=4.5e-09  Score=93.20  Aligned_cols=256  Identities=15%  Similarity=0.143  Sum_probs=159.2

Q ss_pred             EEEEeCCCCcceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEE
Q 010470          249 IKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS  327 (510)
Q Consensus       249 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s  327 (510)
                      |++.+..+.+....+.++...|.+++|+|... ++..++.++.|.|.|+++..++..+..+ ..+++++|.-++.++|+.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            67777766666677788899999999999988 7888999999999999999999888877 889999999888899999


Q ss_pred             EeCCCcEEEEECCCCeE-eeeeeec---CceeEE------EEcCCCCEEEEecCCCcEEEEECC--CCceeeeecccccc
Q 010470          328 AAYDRTLKVWDLHKGYC-VNTIIFH---SNCNAL------AFSMDGQTIFSGHIDGNLRLWDIQ--TGKLLSEVAAHSLA  395 (510)
Q Consensus       328 ~~~dg~i~iwd~~~~~~-~~~~~~~---~~i~~i------~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~  395 (510)
                      |..+|.|.|||++...- +..+...   .++..+      ...+.|.+++....+  +..|.+.  .+...........+
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG  331 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG  331 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence            99999999999985432 1111111   122222      223345555544443  4556553  22333333333336


Q ss_pred             cEEEEEEcCCCCEEEEEecCC----cEE----EEEcCCceeeeEee-cCCCeeecC---ceeEEEcCCCCEEEE-EcCCC
Q 010470          396 AVTSISLSRSGNIILTSGRDN----LHN----LFDIRSLEVCGSLR-ATGNRVASN---WSRSCISPDESYVAA-GSADG  462 (510)
Q Consensus       396 ~i~~i~~~~~~~~l~~~~~d~----~i~----i~d~~~~~~~~~~~-~~~~~~~~~---~~~~~~s~~~~~l~~-~~~dg  462 (510)
                      ...++.+.+..+.++...+.+    .++    -.|..++.++...+ ...+.....   -..+.-.++.++|+. |+..+
T Consensus       332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn  411 (463)
T KOG1645|consen  332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN  411 (463)
T ss_pred             ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence            777778877666666554431    011    11222333322221 110110000   001112345566554 55567


Q ss_pred             eEEEEeCCCcceeecccccCcCEEEEEEeC-CCC-cEEEeeCCCeEEEc
Q 010470          463 SVYIWSISKADIVRTLKEHTAPVLSCSWSG-LGK-PLASADKNGVVCVW  509 (510)
Q Consensus       463 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~s~~~dg~i~iw  509 (510)
                      .+.+||..+++.+.++.-. .+|.+++... +|. +|++-. |..++||
T Consensus       412 ~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iy  458 (463)
T KOG1645|consen  412 ELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIY  458 (463)
T ss_pred             eeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEE
Confidence            8999999999999988744 6888876543 333 555554 4466665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.34  E-value=8.2e-09  Score=92.36  Aligned_cols=217  Identities=16%  Similarity=0.143  Sum_probs=147.2

Q ss_pred             EEEEec-CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEe-cCCCEEEEEeCCCeEEEEEcCCCCeeEeecC
Q 010470          230 SILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT-HDNRSVIAASSSNNLYVWDVNSGRVRHTLTG  307 (510)
Q Consensus       230 ~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  307 (510)
                      +++|.+ ++.++++....+.|..|+..++.... +.. .. ...+++. ++ ..++++...+ +.++|+.+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            578888 77777787788999999998876533 211 11 6778888 55 5566666544 55569888865433332


Q ss_pred             -----CCCceEEEEEecCCCCEEEEEeCC--------CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCC
Q 010470          308 -----HTDKVCAVDVSKISSRHVVSAAYD--------RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDG  373 (510)
Q Consensus       308 -----~~~~v~~i~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg  373 (510)
                           .....+.+++.| ++++.++....        |.|..++.. ++.......-...+.++|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence                 345678899999 77777765543        568888887 66555555556689999999999776 567788


Q ss_pred             cEEEEECCCCce----eeeec-ccc-cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470          374 NLRLWDIQTGKL----LSEVA-AHS-LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC  447 (510)
Q Consensus       374 ~i~i~d~~~~~~----~~~~~-~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  447 (510)
                      .|..|++.....    ...+. ... .+.+..++++.+|++.++....+.|.++|.. ++.+..+..+....    +.++
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~----t~~~  231 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRP----TNCA  231 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSE----EEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCE----EEEE
Confidence            899999853221    12221 111 1358899999999999988889999999988 88877777663333    3478


Q ss_pred             E-cCCCCEEEEE
Q 010470          448 I-SPDESYVAAG  458 (510)
Q Consensus       448 ~-s~~~~~l~~~  458 (510)
                      | .++.+.|++.
T Consensus       232 fgg~~~~~L~vT  243 (246)
T PF08450_consen  232 FGGPDGKTLYVT  243 (246)
T ss_dssp             EESTTSSEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            8 4665655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.34  E-value=2.7e-09  Score=96.48  Aligned_cols=218  Identities=13%  Similarity=0.191  Sum_probs=154.5

Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC-----------CCCceEEEE-EecCCCCEEEEEeCCCcEEEEECCC
Q 010470          274 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG-----------HTDKVCAVD-VSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       274 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------~~~~v~~i~-~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      ..+.||+.++.. ..|.|++||..+.+....--+           ...++.-+. |++.++.+++..| .|...+.+...
T Consensus       273 ~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~  350 (668)
T COG4946         273 NANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWD  350 (668)
T ss_pred             ccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCC
Confidence            345688877654 447899999876553221111           001111122 4555788888888 68888888776


Q ss_pred             CeEeeeeeecCceeEEEEcCCCCEEEEecCCC-cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470          342 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG-NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL  420 (510)
Q Consensus       342 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i  420 (510)
                      +..++ +.....|.-..+..++.-++.|..|| .+-|||.++++.......-  +.|.++..+|+|++++++.....+.+
T Consensus       351 ~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l--g~I~av~vs~dGK~~vvaNdr~el~v  427 (668)
T COG4946         351 GYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL--GNIEAVKVSPDGKKVVVANDRFELWV  427 (668)
T ss_pred             CeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc--cceEEEEEcCCCcEEEEEcCceEEEE
Confidence            65544 34445587778877888899999999 8999999887754444333  89999999999999999999999999


Q ss_pred             EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC----eEEEEeCCCcceeecccccCcCEEEEEEeCCCCc
Q 010470          421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG----SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP  496 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  496 (510)
                      +|+.++.....-+....-+    ..+.|+|++++||.+--+|    .|++||+.+++....-. ..+.=.+-+|.|+|++
T Consensus       428 ididngnv~~idkS~~~lI----tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ry  502 (668)
T COG4946         428 IDIDNGNVRLIDKSEYGLI----TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRY  502 (668)
T ss_pred             EEecCCCeeEeccccccee----EEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcE
Confidence            9999988755444444333    3489999999999987776    59999999888765433 2222356689999998


Q ss_pred             EEEee
Q 010470          497 LASAD  501 (510)
Q Consensus       497 l~s~~  501 (510)
                      |..-+
T Consensus       503 LYfLs  507 (668)
T COG4946         503 LYFLS  507 (668)
T ss_pred             EEEEe
Confidence            76543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.8e-09  Score=103.20  Aligned_cols=211  Identities=17%  Similarity=0.110  Sum_probs=132.8

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCE-EEEEeC---CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCC
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRS-VIAASS---SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISS  322 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  322 (510)
                      ..|.+-|.+... ...+... +......|+|||+. ++..+.   +..|+++|+.+++...... ..+......|+| ++
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG  244 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DG  244 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CC
Confidence            456665665433 2333333 37788999999985 555443   3579999998887654443 455566788999 55


Q ss_pred             C-EEEEEeCC--CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeeccccccc
Q 010470          323 R-HVVSAAYD--RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAA  396 (510)
Q Consensus       323 ~-~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~  396 (510)
                      . ++++.+.+  ..|.++|+.++................|+|||+.|+..+. .|  .|+++|+.+++........  ..
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--~~  322 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--KN  322 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--Cc
Confidence            5 44454434  5688889887765443333332445689999998776543 33  5888898877654333222  11


Q ss_pred             EEEEEEcCCCCEEEEEecC---------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeE
Q 010470          397 VTSISLSRSGNIILTSGRD---------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSV  464 (510)
Q Consensus       397 i~~i~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i  464 (510)
                        ...|+|+|+.++..+..         ..|.+.|+.++.... +.... ..    ....|+|||+.|+..+.+   ..+
T Consensus       323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~-~~----~~p~~SPDG~~I~f~~~~~~~~~L  394 (419)
T PRK04043        323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG-VN----QFPRFSSDGGSIMFIKYLGNQSAL  394 (419)
T ss_pred             --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC-Cc----CCeEECCCCCEEEEEEccCCcEEE
Confidence              24899999988877644         368888888776533 22221 11    126899999988766543   236


Q ss_pred             EEEeCCC
Q 010470          465 YIWSISK  471 (510)
Q Consensus       465 ~iwd~~~  471 (510)
                      .++++..
T Consensus       395 ~~~~l~g  401 (419)
T PRK04043        395 GIIRLNY  401 (419)
T ss_pred             EEEecCC
Confidence            6777654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=1.8e-12  Score=124.96  Aligned_cols=261  Identities=18%  Similarity=0.220  Sum_probs=185.7

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC--eEEE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN--NLYV  293 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i  293 (510)
                      +...+|+.|+...+|++|+.+.++|+.|+..|.|++|++.+|.......+|.++|+.+.-+.+|..+++.+.-.  -..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            44566888999999999999999999999999999999999999999999999999999999999888776443  4689


Q ss_pred             EEcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-----CceeEEEEcCCCCEEE
Q 010470          294 WDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-----SNCNALAFSMDGQTIF  367 (510)
Q Consensus       294 wd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~  367 (510)
                      |++.+ +...++|..    -.++.|+. ....-+.|.......+||+.++.+..++...     ..-++..|+|+...++
T Consensus      1172 W~~~s~~~~~Hsf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             hccccccCccccccc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            99864 455555543    35677876 3334444555567899999999887774332     2347899999988776


Q ss_pred             EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC  447 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  447 (510)
                      -   ||  .+||.+....+..|....  .--.-.|+|+|.-++..+.     |||+++.+.++....-.      -+.+.
T Consensus      1247 n---dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld------qc~Vt 1308 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD------QCAVT 1308 (1516)
T ss_pred             e---Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeech-----hhhhHHHHHHhcCcccc------ceEEE
Confidence            3   44  479999888777776542  2223468999999888764     89999988776654332      23367


Q ss_pred             EcCCCCEEEEEcC------C-----------CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          448 ISPDESYVAAGSA------D-----------GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       448 ~s~~~~~l~~~~~------d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      |+..|+.++..-.      |           ...+-|+..+.+.+.++.. ..+|..++-+|...+|...
T Consensus      1309 FNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1309 FNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred             eccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEE
Confidence            8888877654330      0           1233344444444555543 3356666666766666554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.29  E-value=9.5e-10  Score=92.11  Aligned_cols=225  Identities=11%  Similarity=-0.021  Sum_probs=148.1

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCe-eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-Ccee
Q 010470          278 DNRSVIAASSSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCN  355 (510)
Q Consensus       278 ~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~  355 (510)
                      ...+|+.|+..|...+|...+.+. ......|...|+-+.-.-+...-+..++.|.+++++++..+......... -..+
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            445789999999999999987653 33334455544332222223345667788999999988654433322222 2388


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEECCCC-ce-eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470          356 ALAFSMDGQTIFSGHIDGNLRLWDIQTG-KL-LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       356 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  433 (510)
                      ++.++++++++++.+....|..|.+... .. +..........-.+..|+.....++++..||++.|||++.........
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            9999999999999999999999988643 32 232333333566788999999999999999999999999754433322


Q ss_pred             -cCCCeeecCceeEEEcCCCC--EEEEEcCCCeEEEEeCCCcceeeccc-------ccC-cCEEEEEEeCCCCcEEEeeC
Q 010470          434 -ATGNRVASNWSRSCISPDES--YVAAGSADGSVYIWSISKADIVRTLK-------EHT-APVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       434 -~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~-~~v~~~~~~~~~~~l~s~~~  502 (510)
                       .........+..+.|++.|.  +|+..-.-+.+.+.|++++.....+.       .|. ..|.+-.|+.++..+.+.+.
T Consensus       243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence             22222334455578898664  35555456789999999876543332       233 23777788877765555443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.27  E-value=7.2e-09  Score=88.38  Aligned_cols=234  Identities=18%  Similarity=0.223  Sum_probs=134.2

Q ss_pred             EEEecCCCEEEEeeCCCeEEEEeCCCC--cceecc---cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470          231 ILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTL---YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       231 ~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  305 (510)
                      ++.+.+|+.||.-- |..|.|-...+.  ..+...   ......-..++|+||+..|+.+...|+|++||+.. ..+..+
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            56678898887754 667777655432  111211   22233446799999999999999999999999874 333333


Q ss_pred             cC-------CCCceEEEEEecCC-----CCEEEEEeCCCcEEEEECCC-----CeEeeeeee----cCceeEEEEcCCCC
Q 010470          306 TG-------HTDKVCAVDVSKIS-----SRHVVSAAYDRTLKVWDLHK-----GYCVNTIIF----HSNCNALAFSMDGQ  364 (510)
Q Consensus       306 ~~-------~~~~v~~i~~~~~~-----~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~----~~~i~~i~~~~~~~  364 (510)
                      ..       -...|.++.|.+..     ...|++-..+|.++-|-+..     .+....+..    +..|+++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            22       23556777776532     23566777788887776532     233344433    24699999999988


Q ss_pred             EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCE-E-EEEecCCc------EEEEEcCCceeeeEeecCC
Q 010470          365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI-I-LTSGRDNL------HNLFDIRSLEVCGSLRATG  436 (510)
Q Consensus       365 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l-~~~~~d~~------i~i~d~~~~~~~~~~~~~~  436 (510)
                      .|++|+....      .++.  ..  .. ...+++-.+-.+..+ . ++...|+.      ..+|.+-+.......    
T Consensus       161 LLlVgG~~~~------~~~~--s~--a~-~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~----  225 (282)
T PF15492_consen  161 LLLVGGCEQN------QDGM--SK--AS-SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ----  225 (282)
T ss_pred             EEEEeccCCC------CCcc--cc--cc-ccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc----
Confidence            8887764322      0000  00  00 022222222211111 1 11111111      122322222111111    


Q ss_pred             CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc
Q 010470          437 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH  481 (510)
Q Consensus       437 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  481 (510)
                      ......+..+.+||||..||+...+|.|.+|++.+-.+...+..+
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            111223445899999999999999999999999998877776544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=1.8e-10  Score=109.89  Aligned_cols=260  Identities=9%  Similarity=0.015  Sum_probs=182.7

Q ss_pred             eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCC------------CEEEEEeCCCeEEEEE
Q 010470          228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN------------RSVIAASSSNNLYVWD  295 (510)
Q Consensus       228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i~iwd  295 (510)
                      -.++.|+|.| +||.|+. ..|.+.|..+.+.+..+..|...|+.+.|.|-.            -.|+++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            6778999877 7777774 479999999999999999999999999997732            2466677789999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecC--CC-CEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcC-CCCEEEEec
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKI--SS-RHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSM-DGQTIFSGH  370 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~--~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~-~~~~l~~~~  370 (510)
                      ...+..+..+..|.+++..++|.+.  +. ..++......++.+|+..+|........... ..|+.+.| |.+.+..-+
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~  175 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG  175 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence            9999999999999999999999874  22 5677777788999999999999888877665 45699999 667777777


Q ss_pred             CCCcEEEEECCCCceeeeecccccccEEEEEEcCC-----CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470          371 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS-----GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR  445 (510)
Q Consensus       371 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  445 (510)
                      ..|.+.+.+.-..+.. .      .+..-+.+..+     ..-..+++.+       ..+..      ............
T Consensus       176 s~g~vl~~~~l~~sep-~------~pgk~~qI~sd~Sdl~~lere~at~n-------s~ts~------~~sa~fity~a~  235 (1062)
T KOG1912|consen  176 SKGFVLSCKDLGLSEP-D------VPGKEFQITSDHSDLAHLERETATGN-------STTST------PASAYFITYCAQ  235 (1062)
T ss_pred             cCceEEEEeccCCCCC-C------CCceeEEEecCccchhhhhhhhhccc-------cccCC------CcchhHHHHHHh
Confidence            7788877765321110 0      11111111111     0011111110       00000      000000111223


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC--cEEEeeCCCeEEEc
Q 010470          446 SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK--PLASADKNGVVCVW  509 (510)
Q Consensus       446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~iw  509 (510)
                      ++|+|.-+-++.......+.|+|+.-..++....-..+.+.-+.|-|+++  .|++.-.||.+.+|
T Consensus       236 faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir  301 (1062)
T KOG1912|consen  236 FAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR  301 (1062)
T ss_pred             hhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence            67888766666666677799999998888888877777788888888876  68889999999988

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.26  E-value=6.8e-09  Score=93.94  Aligned_cols=147  Identities=19%  Similarity=0.308  Sum_probs=122.9

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCC-eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDK-SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR  300 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  300 (510)
                      -+|.+.|.-..+..+++-++.|..|| .+-|||..+++. ..+...-+.|.++..+|+|++++++.....+.++|+.++.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            36888899999999999999999999 899999997765 4456677899999999999999999999999999999998


Q ss_pred             eeEeecCCCCceEEEEEecCCCCEEEEEeCCC----cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec
Q 010470          301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR----TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  370 (510)
                      ....-+...+-|+.+.|+| ++..++-+--+|    .|+++|+.+++..........-.+-+|.|++++|..-+
T Consensus       435 v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         435 VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            7766666778899999999 888888776554    68999999888766655555556778999999887544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.26  E-value=2.7e-09  Score=102.48  Aligned_cols=260  Identities=12%  Similarity=0.082  Sum_probs=164.5

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceeccccccc----------ce-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG----------SV-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  304 (510)
                      .+..+++++.+|.+.-+|..+|+.+........          .+ ..+..  ++..++.++.+|.++.+|..+|+.+..
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            356888888899999999999988765432210          00 01112  356688888999999999999998887


Q ss_pred             ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEE--EEcC--CCCEEEEecCCCcEEEEEC
Q 010470          305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL--AFSM--DGQTIFSGHIDGNLRLWDI  380 (510)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i--~~~~--~~~~l~~~~~dg~i~i~d~  380 (510)
                      .........+..+   .+..++.++.+|.+..+|..+|+.+..+....+...+  ..+|  .+..++.++.+|.+..+|.
T Consensus       146 ~~~~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        146 TKVAGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ccCCCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence            7643322211222   2456777778999999999999988887654221000  0112  2345777888999999999


Q ss_pred             CCCceeeeecccccc------cEEEEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC
Q 010470          381 QTGKLLSEVAAHSLA------AVTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE  452 (510)
Q Consensus       381 ~~~~~~~~~~~~~~~------~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  452 (510)
                      .+|+...........      ....+..+|  .+..+++++.+|.+..+|..+++..........  .    .+  ...+
T Consensus       223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~----~~--~~~~  294 (394)
T PRK11138        223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV--N----DF--AVDG  294 (394)
T ss_pred             cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc--c----Cc--EEEC
Confidence            999877665422100      011111222  356777788899999999999887655432211  0    01  2256


Q ss_pred             CEEEEEcCCCeEEEEeCCCcceeecccccC-cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          453 SYVAAGSADGSVYIWSISKADIVRTLKEHT-APVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       453 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..|+.++.+|.++.+|..+|+.+....... ....+...  .+..|+.++.||.|...|
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld  351 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN  351 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence            778888889999999999998765443211 11122222  244677777888877653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.25  E-value=2.6e-10  Score=98.74  Aligned_cols=243  Identities=17%  Similarity=0.278  Sum_probs=175.9

Q ss_pred             ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC-CCCeeEee-cCCCCceEEEEEecCCCCEEEEEeCCCcEEE
Q 010470          259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN-SGRVRHTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLKV  336 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i  336 (510)
                      .+..+.||...+++...-|...-+++.+.|.+++||--. .++.-..+ .....+++++.+.+ ....|++|-..|++.-
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEE
Confidence            356678899999998888888889999999999999543 34433222 23457788899888 7888999999999998


Q ss_pred             EECCC----CeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE
Q 010470          337 WDLHK----GYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT  411 (510)
Q Consensus       337 wd~~~----~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  411 (510)
                      +.+..    ...++....+ ..+..+.|+....++++.+.|..+.-.-.+.+..+..+...  ...+++.+.-.  +.+.
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~t~~~~d~~--~~fv  170 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPASALQFDAL--YAFV  170 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--ccCCCCceeeE--EEEe
Confidence            86643    2333333333 45888888888889999998877765555555544333221  11112222211  5566


Q ss_pred             EecCCcEEEEEc--CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce-eecccccCcCEEEE
Q 010470          412 SGRDNLHNLFDI--RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI-VRTLKEHTAPVLSC  488 (510)
Q Consensus       412 ~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~  488 (510)
                      |...|.|....+  .....+..+.++...+.+    ++|.|....+++|..|..|.+||+..++- ...+.+|...|..+
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~----l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTC----LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL  246 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEE----EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence            666676665544  345566677777666655    89999999999999999999999976543 45677899999999


Q ss_pred             EEeCCCCcEEEeeCCCeEEEcC
Q 010470          489 SWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       489 ~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..-+.-+.|++++.||.|.+|+
T Consensus       247 ~~~~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             hhhhhheeeeeccCCCeEEEEe
Confidence            9888889999999999999996

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.23  E-value=7.1e-09  Score=92.55  Aligned_cols=216  Identities=19%  Similarity=0.175  Sum_probs=142.6

Q ss_pred             CCeEEEEEcCCCCeeEeecCC--CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE
Q 010470          288 SNNLYVWDVNSGRVRHTLTGH--TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT  365 (510)
Q Consensus       288 d~~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~  365 (510)
                      +|.|..||..+|+.+.....-  .....+..+ + .+..+++++.++.|..||..+|+.+..+.....+...- ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence            688999999999988887531  122221122 2 46677777889999999999999998888765533222 224566


Q ss_pred             EEEecCCCcEEEEECCCCceeeee-cccc--cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec-
Q 010470          366 IFSGHIDGNLRLWDIQTGKLLSEV-AAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS-  441 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-  441 (510)
                      +++++.++.|+.+|..+|+.+... ....  ............+..++++..++.+..+|+++++.+............ 
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            677777889999999999998884 3221  011222333334888899988999999999999998888764433211 


Q ss_pred             -----CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          442 -----NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       442 -----~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                           .+..-.+..++ .++.++.+|.+.-+|+.+++.+....  ...+.. ...+++..|+.++.+|.|..||
T Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred             eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence                 11222233345 77777777764444999998664333  222332 1456777888888899999886

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=1.5e-08  Score=97.01  Aligned_cols=200  Identities=14%  Similarity=0.102  Sum_probs=127.3

Q ss_pred             CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC-EEEEEeC---CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC
Q 010470          289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR-HVVSAAY---DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ  364 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~  364 (510)
                      ..|.+-|..... .+.+.... ......|+| +++ .++..+.   +..|.++|+.+++...............|+|||+
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence            356665654333 33343333 778899999 555 3554333   3579999998887666555555566788999998


Q ss_pred             EEEEe-cC--CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEeecCCCe
Q 010470          365 TIFSG-HI--DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNR  438 (510)
Q Consensus       365 ~l~~~-~~--dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~  438 (510)
                      .++.. +.  +..|+++|+.++.. ..+.... .......|+|||+.|+..+.. +  .|+++|+.+++....... ...
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~-~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~  322 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYP-GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN  322 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcE-EEcccCC-CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc
Confidence            77643 32  35688889877764 3343332 234456899999977766533 3  688888887766333221 111


Q ss_pred             eecCceeEEEcCCCCEEEEEcCC---------CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470          439 VASNWSRSCISPDESYVAAGSAD---------GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       439 ~~~~~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  502 (510)
                        .    ..|+|||++|+..+..         ..|++.|+.++... .+... .......|+|||+.|+....
T Consensus       323 --~----~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        323 --N----SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             --C----ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEc
Confidence              1    4799999998876543         36888898877643 33322 22335899999997766544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=9e-10  Score=98.81  Aligned_cols=252  Identities=17%  Similarity=0.222  Sum_probs=176.9

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCC---CcceecccccccceeEEEEecCCCEEEEEeC-CCeEEEEEcCCC
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNT---GSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSG  299 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~  299 (510)
                      |...|+.+..+. .+++++++.||.++.|....   -..+..+..|.+.|.+++.+-++..+.+.+. |..++++|+.+-
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            777787776553 56999999999999997543   2345667788999999999999999999787 999999999875


Q ss_pred             CeeEeec--CCCCceEEEEEecCCC--CEEEEEeCCCcEEEEECCCCeEeeee---eecCceeEEEEcCCCCEEEEecCC
Q 010470          300 RVRHTLT--GHTDKVCAVDVSKISS--RHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALAFSMDGQTIFSGHID  372 (510)
Q Consensus       300 ~~~~~~~--~~~~~v~~i~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d  372 (510)
                      ..+.-++  ...+.+..+ .++.+.  .+-++.-.+|.+.++|-..+.+...+   .+.++|.++.+++.+..+++....
T Consensus        87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            5443222  122222222 223111  22333445789999998755432222   233679999999999999999999


Q ss_pred             CcEEEEECCC------Cceeeeecc--------cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC-
Q 010470          373 GNLRLWDIQT------GKLLSEVAA--------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN-  437 (510)
Q Consensus       373 g~i~i~d~~~------~~~~~~~~~--------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-  437 (510)
                      |.|.-|....      .+....++.        .....+.++.|+|+|..+.+-+.|..|++++.++++.++.+..... 
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~  245 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD  245 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence            9999998762      111111111        1125788999999999999999999999999998877655421100 


Q ss_pred             ----------------------------eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470          438 ----------------------------RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       438 ----------------------------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  478 (510)
                                                  ........++|...|++|+.|+.=| |+|.++.++.+.+.+
T Consensus       246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence                                        0011233477999999999999887 999999988776554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.20  E-value=7.8e-09  Score=86.75  Aligned_cols=241  Identities=12%  Similarity=0.045  Sum_probs=157.6

Q ss_pred             EEEEEec-----CCCEEEEeeCCCeEEEEeCCCCcc-eecccccccceeEEEE-ecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470          229 ASILFEY-----NSARLISGGQDKSIKLWDTNTGSL-SSTLYGCLGSVLDLAI-THDNRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       229 ~~~~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      ..+.|.|     ...+||.||..|...+|...+... ......|...|+-+.= .....-+..++.|.++++.++..+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            3455555     235899999999999999986554 2223333333322111 11223467788888999988875544


Q ss_pred             eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEE
Q 010470          302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG--YCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRL  377 (510)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i  377 (510)
                      ........-.+.++.+++ ++.+.++.+....|..|.+...  ........+  ..--+..|+.....++++..||++.|
T Consensus       151 ~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I  229 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI  229 (344)
T ss_pred             cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence            333322223378899998 8999999999999999988643  223322222  23567888888899999999999999


Q ss_pred             EECCCCceee----eecccccccEEEEEEcCCCC--EEEEEecCCcEEEEEcCCceeeeEeecCCCeee----cCceeEE
Q 010470          378 WDIQTGKLLS----EVAAHSLAAVTSISLSRSGN--IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA----SNWSRSC  447 (510)
Q Consensus       378 ~d~~~~~~~~----~~~~~~~~~i~~i~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~  447 (510)
                      ||++....+.    ....++.+.+..+.|++.|.  +|+.+-.-+.+.+.|++++.....+........    ..+...+
T Consensus       230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~  309 (344)
T KOG4532|consen  230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN  309 (344)
T ss_pred             EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence            9999764433    23445669999999998665  566666668899999999877766654443311    1233355


Q ss_pred             EcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          448 ISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       448 ~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      |+.++.-+.+.+.+. +.=|++.+
T Consensus       310 f~~~n~s~~v~~e~~-~ae~ni~s  332 (344)
T KOG4532|consen  310 FNNENESNDVKNELQ-GAEYNILS  332 (344)
T ss_pred             ccCCCcccccccchh-hheeeccc
Confidence            666666655555443 45555544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=1.8e-11  Score=118.25  Aligned_cols=220  Identities=16%  Similarity=0.233  Sum_probs=162.6

Q ss_pred             ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEE-EeCCC-cEEE
Q 010470          259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS-AAYDR-TLKV  336 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s-~~~dg-~i~i  336 (510)
                      ...++..|....+|++|+.+.+.|++|+..|.|++|++.+|.......+|..+|+.+.-+. ++...++ ++... -..+
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHH
Confidence            3456777888999999999999999999999999999999999999999999999998887 5555444 44333 5789


Q ss_pred             EECCC-CeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc---cccEEEEEEcCCCCEEEEE
Q 010470          337 WDLHK-GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS---LAAVTSISLSRSGNIILTS  412 (510)
Q Consensus       337 wd~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~  412 (510)
                      |++.+ +...+++   ....++.|+.....-+.|+......+||+.++.++.++....   ...-++..|+|+..+++- 
T Consensus      1172 W~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred             hccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence            99864 2223333   235678888765555667766789999999998877643321   123477899999888773 


Q ss_pred             ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470          413 GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG  492 (510)
Q Consensus       413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  492 (510)
                        ||.  +||.+..+.++.|........     -.|+|+|.-++..+.     |||+.+.+.+...+.-.  -..+.|+.
T Consensus      1248 --dGv--LWDvR~~~aIh~FD~ft~~~~-----G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNs 1311 (1516)
T KOG1832|consen 1248 --DGV--LWDVRIPEAIHRFDQFTDYGG-----GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNS 1311 (1516)
T ss_pred             --Cce--eeeeccHHHHhhhhhheeccc-----ccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEecc
Confidence              443  799998887777765543333     258999999988764     89999998887765422  35677887


Q ss_pred             CCCcEEE
Q 010470          493 LGKPLAS  499 (510)
Q Consensus       493 ~~~~l~s  499 (510)
                      .|..++.
T Consensus      1312 tG~VmYa 1318 (1516)
T KOG1832|consen 1312 TGDVMYA 1318 (1516)
T ss_pred             Cccchhh
Confidence            7775543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=8.7e-09  Score=95.06  Aligned_cols=222  Identities=14%  Similarity=0.221  Sum_probs=153.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC-----------CCcEEEE
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-----------DRTLKVW  337 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----------dg~i~iw  337 (510)
                      .-+-+.|||.|.||++-..-| |.+|--.+-..++.+. | ..|.-+.|+| ..++|++-+.           ...+.||
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCC-ccceEEEecCCccccCcccCCCceEEEE
Confidence            346789999999999988766 8899755545555554 4 3578899999 8889998654           2579999


Q ss_pred             ECCCCeEeeeeeecCc----eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470          338 DLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG  413 (510)
Q Consensus       338 d~~~~~~~~~~~~~~~----i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  413 (510)
                      |+.+|...+.+.....    -.-+.||.|+++++.-..+ .|.||+..+..++..-... ...|....|+|.+++|+--.
T Consensus       288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslk-i~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLK-ISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             EccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccC-CccccCcccCCCcceEEEEc
Confidence            9999999888876321    3467899999999976654 7999998765444332222 27899999999988887543


Q ss_pred             cC-----CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-------CC---eEEEEeCCCcce-eec
Q 010470          414 RD-----NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-------DG---SVYIWSISKADI-VRT  477 (510)
Q Consensus       414 ~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------dg---~i~iwd~~~~~~-~~~  477 (510)
                      ..     ..+.+..+.+++.+.+...+.-.-    +.+.|-.+|.||+.--.       .|   .+-|+.+..... +..
T Consensus       366 pe~~~~parvtL~evPs~~~iRt~nlfnVsD----ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~  441 (698)
T KOG2314|consen  366 PETNNIPARVTLMEVPSKREIRTKNLFNVSD----CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV  441 (698)
T ss_pred             ccccCCcceEEEEecCccceeeeccceeeec----cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence            21     356677777666665544333222    23778889999886321       11   355666654432 222


Q ss_pred             ccccCcCEEEEEEeCCCCcEEEee
Q 010470          478 LKEHTAPVLSCSWSGLGKPLASAD  501 (510)
Q Consensus       478 ~~~~~~~v~~~~~~~~~~~l~s~~  501 (510)
                      +. -..+|...+|-|.|..+++-+
T Consensus       442 ve-lke~vi~FaWEP~gdkF~vi~  464 (698)
T KOG2314|consen  442 VE-LKESVIAFAWEPHGDKFAVIS  464 (698)
T ss_pred             ee-cchheeeeeeccCCCeEEEEE
Confidence            22 456789999999999776644

>PRK02888 nitrous-oxide reductase; Validated

Probab=99.18  E-value=2.5e-08  Score=96.10  Aligned_cols=254  Identities=14%  Similarity=0.151  Sum_probs=158.2

Q ss_pred             EEEeeCCCeEEEEeCCCCcceecccccc-------------ccee-------EEEE-------------ecCCCEEEEEe
Q 010470          240 LISGGQDKSIKLWDTNTGSLSSTLYGCL-------------GSVL-------DLAI-------------THDNRSVIAAS  286 (510)
Q Consensus       240 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~-------~~~~-------------~~~~~~l~~~~  286 (510)
                      |.||+..|.|+|+-+.+++.+..+.-..             ..|.       .+.|             .-||++++.-.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find  148 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND  148 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence            6788899999999998887655432110             0010       0111             12677777776


Q ss_pred             C-CCeEEEEEcCCCCeeEeecC-CCCceEEEEE-------------------ecCCCCEE-EEEeCCCcEEEEECCCCeE
Q 010470          287 S-SNNLYVWDVNSGRVRHTLTG-HTDKVCAVDV-------------------SKISSRHV-VSAAYDRTLKVWDLHKGYC  344 (510)
Q Consensus       287 ~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~i~~-------------------~~~~~~~l-~s~~~dg~i~iwd~~~~~~  344 (510)
                      . +..|...++...++-..+.- ....+.++.+                   .| ++..+ .+.-..+.+.+.|..+.+.
T Consensus       149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~vSvID~etmeV  227 (635)
T PRK02888        149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLFTAVDAETMEV  227 (635)
T ss_pred             CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEEEEEECccceE
Confidence            3 55666666655443322211 1111222222                   22 33332 2233356788889888888


Q ss_pred             eeeeeecCceeEEEEcCCCCEEEEec----------------------------------------CCCcEEEEECCC--
Q 010470          345 VNTIIFHSNCNALAFSMDGQTIFSGH----------------------------------------IDGNLRLWDIQT--  382 (510)
Q Consensus       345 ~~~~~~~~~i~~i~~~~~~~~l~~~~----------------------------------------~dg~i~i~d~~~--  382 (510)
                      ..++........+.++|+|.++++.+                                        .++.|.++|.++  
T Consensus       228 ~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~  307 (635)
T PRK02888        228 AWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAA  307 (635)
T ss_pred             EEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccc
Confidence            88888888888889999999888775                                        124477778776  


Q ss_pred             ---CceeeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCcee------------eeEeecCCCeeecCceeE
Q 010470          383 ---GKLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEV------------CGSLRATGNRVASNWSRS  446 (510)
Q Consensus       383 ---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~  446 (510)
                         ...+..+...  ..+..+.++|||+++++++ .++++.|+|+.+.+.            .........+     ...
T Consensus       308 ~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-----LHT  380 (635)
T PRK02888        308 NAGSALTRYVPVP--KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-----LHT  380 (635)
T ss_pred             cCCcceEEEEECC--CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-----ceE
Confidence               3444444444  5788899999999887766 478999999987553            2333222222     236


Q ss_pred             EEcCCCCEEEEEcCCCeEEEEeCCC----------cceeecccccCcCE-----EEEEEeCCCCcEEEee
Q 010470          447 CISPDESYVAAGSADGSVYIWSISK----------ADIVRTLKEHTAPV-----LSCSWSGLGKPLASAD  501 (510)
Q Consensus       447 ~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~  501 (510)
                      +|+++|+...+-.-|..|..||+..          ...+..+.-|-.+-     .+=.-.|+|++|++..
T Consensus       381 aFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        381 AFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             EECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            8999999888888899999999876          23444444343322     1223368888888764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=1.3e-09  Score=93.20  Aligned_cols=242  Identities=17%  Similarity=0.303  Sum_probs=159.7

Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-----eeEeecCCC------------CceEEEEEecC-CCCEEEE
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-----VRHTLTGHT------------DKVCAVDVSKI-SSRHVVS  327 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~-~~~~l~s  327 (510)
                      ....|+++.|...|.|+++|...|.|.+|.-....     ....+++|.            ..|..+.|... +...++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35678999999999999999999999999755432     122344443            35777888753 3456777


Q ss_pred             EeCCCcEEEEECCCCe-------------------------------------Eeee-----e--eecCceeEEEEcCCC
Q 010470          328 AAYDRTLKVWDLHKGY-------------------------------------CVNT-----I--IFHSNCNALAFSMDG  363 (510)
Q Consensus       328 ~~~dg~i~iwd~~~~~-------------------------------------~~~~-----~--~~~~~i~~i~~~~~~  363 (510)
                      .+.|.+|++|.+....                                     .+..     .  .++..++++.++.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7789999999874320                                     0000     0  011237888998888


Q ss_pred             CEEEEecCCCcEEEEECCCCcee---eeecccc----cccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeee----E
Q 010470          364 QTIFSGHIDGNLRLWDIQTGKLL---SEVAAHS----LAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCG----S  431 (510)
Q Consensus       364 ~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~----~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~----~  431 (510)
                      ..++++. |=.|.+|++.-....   ..+..+.    ...|++..|+|. .+.+.-++..|.|++-|++......    .
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            8777664 568999988643322   2223332    135888999995 4566667788999999998432211    1


Q ss_pred             eecC--------CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeecccccC------------cCE---EE
Q 010470          432 LRAT--------GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKEHT------------APV---LS  487 (510)
Q Consensus       432 ~~~~--------~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~------------~~v---~~  487 (510)
                      +...        ...+.+.++.+.|+++|+||++-+. -+|+|||+.. ..++.+++.|.            ..|   ..
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence            1111        1122345677899999999998775 4699999876 45666664432            233   45


Q ss_pred             EEEeCCCCcEEEeeCCCeEEEc
Q 010470          488 CSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       488 ~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      +.||.|.+.+.+|+..+..-+|
T Consensus       343 isfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         343 ISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             EEecCCcccccccccccceeee
Confidence            7899998899998887665554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.14  E-value=1.2e-07  Score=98.94  Aligned_cols=284  Identities=14%  Similarity=0.184  Sum_probs=176.0

Q ss_pred             eccccccceEEEEEecCCCEEEEeeC---C---CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC---CCe
Q 010470          220 KINAHEGGCASILFEYNSARLISGGQ---D---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS---SNN  290 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~  290 (510)
                      .+. +...-..++|-.||.++|+.+-   .   ..++||+-+ |....+...-.+--.+++|.|.|++|++...   ...
T Consensus       205 ~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~  282 (928)
T PF04762_consen  205 KLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD  282 (928)
T ss_pred             ccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence            344 6667788999999999998875   2   579999987 6655544444444567899999998888764   346


Q ss_pred             EEEEEcCCCCeeEee----cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE--eeeeeec--CceeEEEEcCC
Q 010470          291 LYVWDVNSGRVRHTL----TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--VNTIIFH--SNCNALAFSMD  362 (510)
Q Consensus       291 i~iwd~~~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~--~~i~~i~~~~~  362 (510)
                      |.+|. ++|-....|    ......|..+.|++ ++..|+....|. |.+|-..+...  .+.+...  ..+..+.|+|.
T Consensus       283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE  359 (928)
T ss_pred             EEEEe-cCCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence            77776 334332233    23456899999999 888888877555 99999876542  3333333  33566999984


Q ss_pred             -CCEEEEecCCCcEEEEECC----CCc--------eeeee----------------------cccccccEEEEEEcCCCC
Q 010470          363 -GQTIFSGHIDGNLRLWDIQ----TGK--------LLSEV----------------------AAHSLAAVTSISLSRSGN  407 (510)
Q Consensus       363 -~~~l~~~~~dg~i~i~d~~----~~~--------~~~~~----------------------~~~~~~~i~~i~~~~~~~  407 (510)
                       ...|.+.+.+|.+..+++.    .+.        .+..+                      ...-..+|.+++|++++.
T Consensus       360 ~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~  439 (928)
T PF04762_consen  360 KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS  439 (928)
T ss_pred             CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC
Confidence             4456666666666555431    110        01100                      001126799999999998


Q ss_pred             EEEEEecCCcEEEEEcCCceee--------eEeec------CCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCC
Q 010470          408 IILTSGRDNLHNLFDIRSLEVC--------GSLRA------TGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSIS  470 (510)
Q Consensus       408 ~l~~~~~d~~i~i~d~~~~~~~--------~~~~~------~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~  470 (510)
                      .+++-..||.+.+|........        ..+..      ........+..++|..+..+++....+   +.+.++++.
T Consensus       440 ~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  519 (928)
T PF04762_consen  440 RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID  519 (928)
T ss_pred             eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence            8999999999999985432211        11111      011112234456777767666655543   678888874


Q ss_pred             Ccc---eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          471 KAD---IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       471 ~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      ...   .+.....-.+.+..+...++...++.-..+|.+..
T Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~  560 (928)
T PF04762_consen  520 DSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQ  560 (928)
T ss_pred             cCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence            432   22222223445555666665544555566777653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.13  E-value=1.3e-09  Score=106.25  Aligned_cols=184  Identities=20%  Similarity=0.287  Sum_probs=144.7

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEE
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV  315 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i  315 (510)
                      ++..++.|+-...+..+|+.+.+..+...-..+.|+-++.  +++++++|...|+|.+-|.++.+.++++..|.+.|.++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            3556777777778889999988877766555545655554  68899999999999999999999999999999999998


Q ss_pred             EEecCCCCEEEEEeC---------CCcEEEEECCCCeEeeeeeecCceeEEEEcCC-CCEEEEecCCCcEEEEEC---CC
Q 010470          316 DVSKISSRHVVSAAY---------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMD-GQTIFSGHIDGNLRLWDI---QT  382 (510)
Q Consensus       316 ~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~---~~  382 (510)
                      .+   .++.|+++|.         |..|+|||++.-+.+.-+..+....-+.|+|. ...+++++..|...+.|.   .+
T Consensus       224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence            77   5788888876         56789999998888877777777777888884 456777888899999993   33


Q ss_pred             CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          383 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       383 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      ...-........+.+..++++++|+.++.|..+|.|.+|.-+
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            321112222222559999999999999999999999999743

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=99.13  E-value=2.6e-07  Score=84.15  Aligned_cols=273  Identities=18%  Similarity=0.150  Sum_probs=138.7

Q ss_pred             EEEecCCCEEEEeeC-CC--eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC
Q 010470          231 ILFEYNSARLISGGQ-DK--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG  307 (510)
Q Consensus       231 ~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  307 (510)
                      =+|.+||+.|+.++. ||  .+.+.|+.+++..+.-.+.........++|+++.++-...+..|.-.|+.+.+....+..
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            367889977665554 54  567778888877655444333344677889999888777777899999999887666666


Q ss_pred             CCCceEEEEEecC-CCCEEEEEeC----------------------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC
Q 010470          308 HTDKVCAVDVSKI-SSRHVVSAAY----------------------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ  364 (510)
Q Consensus       308 ~~~~v~~i~~~~~-~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~  364 (510)
                      ....+-...|... +...++..-.                      ...|.-.|+.+|+....+....-+..+.|+|...
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP  200 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence            6666655566432 3444332211                      2346667888888766666666688999999655


Q ss_pred             EEEE-ecC---CC-cEEEEECC-CCceeeeecccc-cccEEEEEEcCCCCEEEEEec-----CCcEEEEEcCCceeeeEe
Q 010470          365 TIFS-GHI---DG-NLRLWDIQ-TGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGR-----DNLHNLFDIRSLEVCGSL  432 (510)
Q Consensus       365 ~l~~-~~~---dg-~i~i~d~~-~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~  432 (510)
                      .+++ |..   +. .-+||-++ .+.....+..+. ...+.-=-|.|+|..|.--+.     +..|.-+|+.+++.....
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~  280 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM  280 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence            4444 432   11 12445443 233333333322 234555678999987655332     335667788877654332


Q ss_pred             ecCCCeeecCceeEEEcCCCCEEEEEcCCC----------------eEEEEeCCCcceeec---------ccccCc-CEE
Q 010470          433 RATGNRVASNWSRSCISPDESYVAAGSADG----------------SVYIWSISKADIVRT---------LKEHTA-PVL  486 (510)
Q Consensus       433 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~---------~~~~~~-~v~  486 (510)
                      ..+.      ......++||++++.-+.|.                .|+++++..+.....         +.++.. .=.
T Consensus       281 ~~p~------~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP  354 (386)
T PF14583_consen  281 EMPW------CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP  354 (386)
T ss_dssp             EE-S------EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred             eCCc------eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence            2221      12355689999988655442                466778776554211         121111 124


Q ss_pred             EEEEeCCCCcEE-EeeCCCeEEEc
Q 010470          487 SCSWSGLGKPLA-SADKNGVVCVW  509 (510)
Q Consensus       487 ~~~~~~~~~~l~-s~~~dg~i~iw  509 (510)
                      ...|+|||++++ +++..|...||
T Consensus       355 hp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  355 HPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             CCccCCCCCEEEEECCCCCCccEE
Confidence            679999999655 56677776665

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=2.5e-09  Score=96.05  Aligned_cols=274  Identities=17%  Similarity=0.143  Sum_probs=185.2

Q ss_pred             chHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeC-CCeEEEEeCCCCcceecc
Q 010470          185 GLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTL  263 (510)
Q Consensus       185 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~  263 (510)
                      ...-+.+++.||.++.|.....      .-...+..+..|.+.|.+++.+.+|..+.|++. |..++++|+.+-..+.-+
T Consensus        19 ka~fiiqASlDGh~KFWkKs~i------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi   92 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRI------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI   92 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCc------cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc
Confidence            3445667889999999985431      112355667899999999999999999999888 999999999876554332


Q ss_pred             cccccceeEEEE-ecCC--C-EEEEE-eCCCeEEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEE
Q 010470          264 YGCLGSVLDLAI-THDN--R-SVIAA-SSSNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV  336 (510)
Q Consensus       264 ~~~~~~v~~~~~-~~~~--~-~l~~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i  336 (510)
                      ....-+ -.+.| ...|  . .++++ -.++.+.++|-...-  ....-.-|..+|.++.+++ .+..+++....|.|.-
T Consensus        93 KL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEy  170 (558)
T KOG0882|consen   93 KLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEY  170 (558)
T ss_pred             ccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEe
Confidence            211111 11222 2222  1 23333 367899999965433  2333356999999999999 7888999999999999


Q ss_pred             EECCC------CeEeeee----------eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc---------
Q 010470          337 WDLHK------GYCVNTI----------IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA---------  391 (510)
Q Consensus       337 wd~~~------~~~~~~~----------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------  391 (510)
                      |....      +.....+          .....+.++.|+|+|..+.+-..|..|+++++++|+.++.+..         
T Consensus       171 Ws~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~  250 (558)
T KOG0882|consen  171 WSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP  250 (558)
T ss_pred             ecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence            98863      1111111          1224478999999999999999999999999999876554421         


Q ss_pred             -----------------------cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe----------
Q 010470          392 -----------------------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR----------  438 (510)
Q Consensus       392 -----------------------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------  438 (510)
                                             +....-+.+.|+..|++|+-++.=| |+++++.++.+...+......          
T Consensus       251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~  329 (558)
T KOG0882|consen  251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQG  329 (558)
T ss_pred             ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhh
Confidence                                   1112345678889999998887654 788888888777665321100          


Q ss_pred             -----------eecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470          439 -----------VASNWSRSCISPDESYVAAGSADGSVYIW  467 (510)
Q Consensus       439 -----------~~~~~~~~~~s~~~~~l~~~~~dg~i~iw  467 (510)
                                 ..+.-..+.+.+|...++++-...++++|
T Consensus       330 ~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  330 AQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             hhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence                       00000113356677778888778888888

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.11  E-value=1.6e-09  Score=96.10  Aligned_cols=161  Identities=19%  Similarity=0.192  Sum_probs=115.3

Q ss_pred             eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe----eEeecCCCCceEEEEEecCCCCEEEE---EeCCCcEEEEECCCC
Q 010470          270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRV----RHTLTGHTDKVCAVDVSKISSRHVVS---AAYDRTLKVWDLHKG  342 (510)
Q Consensus       270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~s---~~~dg~i~iwd~~~~  342 (510)
                      +..+..++.+++++++..+....++++.....    ...+. -...-+++.+.. ....+..   .+....+.+|....+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeee-ccceEEEEeecCCceeeeeeccccc
Confidence            34556678888888888888777777654332    22222 222334444444 2233333   334455666666556


Q ss_pred             eEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEE
Q 010470          343 YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD  422 (510)
Q Consensus       343 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d  422 (510)
                      .+...+.+-+-+..++|+||+++|+++..|..|++-.......+..+...|..-|..++.-++ ..|++++.|+++++||
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD  221 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence            666666666779999999999999999999999998888777788887766688999998765 5589999999999999


Q ss_pred             cCCceeeeEee
Q 010470          423 IRSLEVCGSLR  433 (510)
Q Consensus       423 ~~~~~~~~~~~  433 (510)
                      +.+++...++.
T Consensus       222 ~~sgk~L~t~d  232 (390)
T KOG3914|consen  222 ITSGKLLDTCD  232 (390)
T ss_pred             cccCCcccccc
Confidence            99998876654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.10  E-value=4.3e-07  Score=80.26  Aligned_cols=228  Identities=16%  Similarity=0.166  Sum_probs=151.4

Q ss_pred             eeEEEEecC-CCEEEEEeCCC-eEEEEEcCCCCeeEeecCCCCce--EEEEEecCCCCEEEEEeC-----CCcEEEEECC
Q 010470          270 VLDLAITHD-NRSVIAASSSN-NLYVWDVNSGRVRHTLTGHTDKV--CAVDVSKISSRHVVSAAY-----DRTLKVWDLH  340 (510)
Q Consensus       270 v~~~~~~~~-~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~l~s~~~-----dg~i~iwd~~  340 (510)
                      ...++.+|. ...++.+-.-| ...+||..+++....+....+.-  -...|++ ++.+|++.-.     .|.|-|||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence            356788884 44555565555 57899999998877765433332  1256888 8888887644     4899999998


Q ss_pred             -CCeEeeeeeecC-ceeEEEEcCCCCEEEEecC------------------CCcEEEEECCCCceeeeecc---cccccE
Q 010470          341 -KGYCVNTIIFHS-NCNALAFSMDGQTIFSGHI------------------DGNLRLWDIQTGKLLSEVAA---HSLAAV  397 (510)
Q Consensus       341 -~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~---~~~~~i  397 (510)
                       +-..+..+..+. .+..+.+.|||..|+++..                  +-++...|..+|+.+.....   .+...+
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             555666665543 4778889999988877532                  22466677888888777443   223689


Q ss_pred             EEEEEcCCCCEEEEEecCCc-------EEEEEcCCceeeeEeecCC---CeeecCceeEEEcCCCCEEEEEc-CCCeEEE
Q 010470          398 TSISLSRSGNIILTSGRDNL-------HNLFDIRSLEVCGSLRATG---NRVASNWSRSCISPDESYVAAGS-ADGSVYI  466 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~~~d~~-------i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~i  466 (510)
                      .-+++.++|..++..-..|.       +-+++.  +.....+....   ......+.+++++++|.++++.+ ..|.+.+
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            99999999988777655442       333332  22222222221   12233455699999999886655 4678999


Q ss_pred             EeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          467 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       467 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      ||..++..+......  .+..++-.+++ ++++.+..
T Consensus       244 ~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  244 WDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             EECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCc
Confidence            999999988776533  36677777766 56665544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.08  E-value=8.9e-10  Score=107.23  Aligned_cols=180  Identities=18%  Similarity=0.325  Sum_probs=138.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEE
Q 010470          321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTS  399 (510)
Q Consensus       321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~  399 (510)
                      ++..++.|+....+..+|+++.+..+...... .+.-++.  +++++++|...|+|.+-|.++.+.+.++..|. +.+..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs-~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS-GSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccc-cceee
Confidence            45677778888889999999988877776654 4555544  68999999999999999999999999999998 77766


Q ss_pred             EEEcCCCCEEEEEec---------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEcCCCeEEEEeC
Q 010470          400 ISLSRSGNIILTSGR---------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       400 i~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~  469 (510)
                      +..  .|+.|++++.         |..|+|||+|+.+.+..+..+..+..     +.|.|. ...+++.+..|...+-|.
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~f-----lrf~Psl~t~~~V~S~sGq~q~vd~  295 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQF-----LRFHPSLTTRLAVTSQSGQFQFVDT  295 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchh-----hhhcccccceEEEEecccceeeccc
Confidence            554  6899999875         44689999998887766665555432     566774 446777888899999984


Q ss_pred             CC-cce---eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          470 SK-ADI---VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       470 ~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+ +.+   +.-+....+.+.+++++++|..++.|..+|.|.+|.
T Consensus       296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            33 222   122222344589999999999999999999999994

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.08  E-value=2.7e-09  Score=89.02  Aligned_cols=167  Identities=15%  Similarity=0.168  Sum_probs=109.8

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-eecccccccceeEEEEecCCCEEEEEeC-----CC
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-SSTLYGCLGSVLDLAITHDNRSVIAASS-----SN  289 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~  289 (510)
                      ...+.+..|+++-.+-+.+-.++.+++++.||.+.+++.+.-.. ...+..-...-.+.++...++.+.++..     -+
T Consensus        80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD  159 (319)
T ss_pred             CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence            34455556776666666666778999999999999999765211 1112211111223334445555554432     23


Q ss_pred             eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee-eeee-cCceeEEEEcC-CCCEE
Q 010470          290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN-TIIF-HSNCNALAFSM-DGQTI  366 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-~~~i~~i~~~~-~~~~l  366 (510)
                      ..++|+++..+....-......|.+++-+|...+.+++|+.||.+.+||.+...... .+.. ...+..+-|+| ++..|
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            566777654332222222234499999999888889999999999999998764322 2222 35689999999 77899


Q ss_pred             EEecCCCcEEEEECCC
Q 010470          367 FSGHIDGNLRLWDIQT  382 (510)
Q Consensus       367 ~~~~~dg~i~i~d~~~  382 (510)
                      ++++.||.+..||..+
T Consensus       240 ft~sedGslw~wdas~  255 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAST  255 (319)
T ss_pred             eEecCCCcEEEEcCCC
Confidence            9999999999999743

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=4.7e-10  Score=97.22  Aligned_cols=161  Identities=17%  Similarity=0.244  Sum_probs=126.0

Q ss_pred             EEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCC-----ceeeeecccccccEEEE
Q 010470          326 VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-----KLLSEVAAHSLAAVTSI  400 (510)
Q Consensus       326 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~i  400 (510)
                      ++.+.+-.|-+-|+.+|.. +.+...++|.+..|...++.++.|+.+|.|..+|++..     .+...+...  +.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~--Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD--SSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC--cchhhh
Confidence            5566688899999987753 44556678999999988999999999999999999864     344444433  789998


Q ss_pred             EEcC-CCCEEEEEecCCcEEEEEcCCcee---eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470          401 SLSR-SGNIILTSGRDNLHNLFDIRSLEV---CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR  476 (510)
Q Consensus       401 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  476 (510)
                      ..-. ++.+|.+++.+|.|++||++.-+.   +..+.+|.+....  ..+.+.+....|++++.|...+||.+++|.++.
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~--l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY--LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC  382 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccc--cccccccccceEEEccCeeEEEEEecccCceee
Confidence            8776 789999999999999999997665   7777777665443  225567888899999999999999999999998


Q ss_pred             cccccCc----CEEEEEEe
Q 010470          477 TLKEHTA----PVLSCSWS  491 (510)
Q Consensus       477 ~~~~~~~----~v~~~~~~  491 (510)
                      +++....    .+.+++|.
T Consensus       383 tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  383 TIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ccCCCCccccccccceehh
Confidence            8865332    34555654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.04  E-value=9.5e-07  Score=78.11  Aligned_cols=229  Identities=17%  Similarity=0.199  Sum_probs=152.3

Q ss_pred             eEEEEEec-CCCEEEEeeCCCe-EEEEeCCCCcceecccccccce--eEEEEecCCCEEEEEeC-----CCeEEEEEcC-
Q 010470          228 CASILFEY-NSARLISGGQDKS-IKLWDTNTGSLSSTLYGCLGSV--LDLAITHDNRSVIAASS-----SNNLYVWDVN-  297 (510)
Q Consensus       228 v~~~~~s~-~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~iwd~~-  297 (510)
                      ...++.+| .+..++.+-.-|. ..+||..++.....+....+.-  -.-+|++||++|++.-+     .|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34567778 4556666666654 7889999888776554322221  13689999999999754     4799999998 


Q ss_pred             CCCeeEeecCCCCceEEEEEecCCCCEEEEEe------------------CCCcEEEEECCCCeEeeeeeec-----Cce
Q 010470          298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA------------------YDRTLKVWDLHKGYCVNTIIFH-----SNC  354 (510)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~~~~~-----~~i  354 (510)
                      +.+.+..+..|.-....+.+.| ++..|+++-                  .+-++...|..+|..+......     ..+
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence            5667788888877778888988 665555442                  1345667788889888776542     258


Q ss_pred             eEEEEcCCCCEEEEecCCCc-------EEEEECCCCceeeeeccc------ccccEEEEEEcCCCCEEEEEe-cCCcEEE
Q 010470          355 NALAFSMDGQTIFSGHIDGN-------LRLWDIQTGKLLSEVAAH------SLAAVTSISLSRSGNIILTSG-RDNLHNL  420 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~-~d~~i~i  420 (510)
                      ..+++.++|..++..-..|.       |.+++  .+..+..+...      -...+-+|++++++.++++++ ..|.+.+
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            99999999987776544442       44444  23323323221      126799999999998776555 6789999


Q ss_pred             EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470          421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW  467 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw  467 (510)
                      ||..++..+........      +.++..+++ ++++.+ .|.+...
T Consensus       244 ~d~~tg~~~~~~~l~D~------cGva~~~~~-f~~ssG-~G~~~~~  282 (305)
T PF07433_consen  244 WDAATGRLLGSVPLPDA------CGVAPTDDG-FLVSSG-QGQLIRL  282 (305)
T ss_pred             EECCCCCEeeccccCce------eeeeecCCc-eEEeCC-CccEEEc
Confidence            99999988766654332      225555555 454444 4544333

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.04  E-value=7.4e-09  Score=86.49  Aligned_cols=196  Identities=12%  Similarity=0.116  Sum_probs=115.4

Q ss_pred             eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce------------ecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLS------------STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      |+.+.|+.+ ..|+++..++.+..+....+.+.            ..+..|.++-.+-+.+-.++.++++..||.+.+++
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            666666543 36677766666655544333221            22222333222223333466799999999999998


Q ss_pred             cCCCC-eeEeecCCCCceEEEEEecCCCCEEEEEeC-----CCcEEEEECCCCeEe-eeeeecCceeEEEEcCCC-CEEE
Q 010470          296 VNSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAY-----DRTLKVWDLHKGYCV-NTIIFHSNCNALAFSMDG-QTIF  367 (510)
Q Consensus       296 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~-~~~~~~~~i~~i~~~~~~-~~l~  367 (510)
                      .+... ..+.+......-.+.++.. .++.+.+++-     -+..+.|+++..+.. ........+.+++-+|.. +.++
T Consensus       118 ~~~~~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~  196 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC  196 (319)
T ss_pred             chHHHhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence            76411 1111111111111222222 2444444331     234556665432211 111122348899999954 5666


Q ss_pred             EecCCCcEEEEECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCC
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      +|+.||.+-+||.++...+..+...+..++.-+-|+| ++..|++++.||.+.-||..+
T Consensus       197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            8899999999999988666555544458999999999 567899999999999999864

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.03  E-value=2.9e-07  Score=77.32  Aligned_cols=258  Identities=15%  Similarity=0.091  Sum_probs=145.9

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEE
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD  316 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~  316 (510)
                      |++++.|+..|.+++.+..+|.....+.....--......+++..+..++.|++.+..|..+..++.+.+...+...+-.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~  142 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV  142 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence            67899999999999999999977666554332223345677899999999999999999999888888775555444555


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCC--eEeeeeeecCceeE--EEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc
Q 010470          317 VSKISSRHVVSAAYDRTLKVWDLHKG--YCVNTIIFHSNCNA--LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH  392 (510)
Q Consensus       317 ~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~i~~--i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  392 (510)
                      ..| ....++.+...|.+.--..+.+  ..+.......++-+  +++   +..+..++-||.+.-+| ..|+.+..+...
T Consensus       143 i~~-g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~  217 (354)
T KOG4649|consen  143 IAP-GDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPATK  217 (354)
T ss_pred             ecC-CCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecCC
Confidence            566 3445555555666665555444  22222222222211  222   34455566677777777 566666654433


Q ss_pred             ccccEEE-EEEc-CCCCEEEEEecCC--------cEEEEEcCCceeeeEeecCCCeeecCceeEEE-cC---CCCEEEEE
Q 010470          393 SLAAVTS-ISLS-RSGNIILTSGRDN--------LHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-SP---DESYVAAG  458 (510)
Q Consensus       393 ~~~~i~~-i~~~-~~~~~l~~~~~d~--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~---~~~~l~~~  458 (510)
                        ++|.. -+.+ |..+.+..+..+-        .-.+|...++...+.+..+.-.       ..+ +|   ..+++..+
T Consensus       218 --GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~-------F~~h~~~~S~~~ll~~~  288 (354)
T KOG4649|consen  218 --GPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLR-------FDLHSPGISYPKLLRRS  288 (354)
T ss_pred             --CceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccc-------eeccCCCCcchhhhhhh
Confidence              33221 1112 3333333333332        2235655555333333222111       111 12   24567788


Q ss_pred             cCCCeEEEEeCCCcceeecccccCcCEEEEE--------Ee-CC--CCcEEEeeCCCeEEEcC
Q 010470          459 SADGSVYIWSISKADIVRTLKEHTAPVLSCS--------WS-GL--GKPLASADKNGVVCVWT  510 (510)
Q Consensus       459 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--------~~-~~--~~~l~s~~~dg~i~iwd  510 (510)
                      +.||.+.|..+...  +.....|.+.+..+.        |+ |-  +..|+.|+.|..++-||
T Consensus       289 s~dgkv~il~~~~s--l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld  349 (354)
T KOG4649|consen  289 SGDGKVMILMTSKS--LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD  349 (354)
T ss_pred             cCCCcEEEEEeccc--ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence            89999988854322  333333333322221        11 10  23577788888999886

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.02  E-value=3.2e-07  Score=90.37  Aligned_cols=261  Identities=15%  Similarity=0.205  Sum_probs=161.6

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceeccccccc------cee--EEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLG------SVL--DLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH  308 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  308 (510)
                      +..++.++.++.|.-.|..+|+.+..+.....      .+.  .+.+. ++..++.++.++.|+.+|..+|+.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            44677788889999999999988766543221      110  11111 2267888889999999999999998887643


Q ss_pred             CCc-----eE-EEEEecCCCCEEEEEe---------CCCcEEEEECCCCeEeeeeeecCc--------------------
Q 010470          309 TDK-----VC-AVDVSKISSRHVVSAA---------YDRTLKVWDLHKGYCVNTIIFHSN--------------------  353 (510)
Q Consensus       309 ~~~-----v~-~i~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~--------------------  353 (510)
                      ...     +. +..+.   +..++.++         .+|.+..+|..+|+.+..+.....                    
T Consensus       140 ~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         140 DQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             CCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            321     11 11221   24455543         368899999999998887754311                    


Q ss_pred             -e-eEEEEcCCCCEEEEecCCC------------------cEEEEECCCCceeeeecccccc-----cEEEEEEc----C
Q 010470          354 -C-NALAFSMDGQTIFSGHIDG------------------NLRLWDIQTGKLLSEVAAHSLA-----AVTSISLS----R  404 (510)
Q Consensus       354 -i-~~i~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~-----~i~~i~~~----~  404 (510)
                       + ...++.+.+..+++++.++                  .|.-+|..+|+....+......     ......+.    -
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence             0 1344555567788887665                  6999999999998887532100     00001111    1


Q ss_pred             CCC---EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE------------------cCCCe
Q 010470          405 SGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG------------------SADGS  463 (510)
Q Consensus       405 ~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~------------------~~dg~  463 (510)
                      +|.   .+++++.+|.+..+|..+++.+.........       +..+|  ..++.+                  ..+|.
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~-------~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~  367 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP-------MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG  367 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccc-------cccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence            333   6788889999999999999988766533111       22333  222222                  24678


Q ss_pred             EEEEeCCCcceeecccccC--------cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          464 VYIWSISKADIVRTLKEHT--------APVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       464 i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |.-+|+.+|+.+.......        .+...-.....+..|+.++.||.|+.+|
T Consensus       368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald  422 (488)
T cd00216         368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD  422 (488)
T ss_pred             EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence            8888998888876654320        1111111112456788888899887664

The alignment model contains an 8-bladed beta-propeller.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.01  E-value=5.3e-09  Score=92.84  Aligned_cols=162  Identities=20%  Similarity=0.326  Sum_probs=114.0

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc---eecccccccceeEEEEecCCCEEEEEeCCC---eEEEEEcCCCC
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSL---SSTLYGCLGSVLDLAITHDNRSVIAASSSN---NLYVWDVNSGR  300 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~  300 (510)
                      .+..+.+++.++++|++..+....++++.....   ......-....+.+.|..+...+..+..-|   .+.+|....+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            345566778888888888888877777654332   111112223345566666666666665444   45555555443


Q ss_pred             eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-cC-ceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HS-NCNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-~i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                       ...+-||-.-++.++|+| ++.+|+++..|..|++-....-..+..+.. |. -|..+++.+ +..|++|+.|++|++|
T Consensus       144 -~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  144 -CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLW  220 (390)
T ss_pred             -cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence             334567999999999999 789999999999999988876666666654 32 388888874 5568999999999999


Q ss_pred             ECCCCceeeeecc
Q 010470          379 DIQTGKLLSEVAA  391 (510)
Q Consensus       379 d~~~~~~~~~~~~  391 (510)
                      |+++|+.+..+..
T Consensus       221 d~~sgk~L~t~dl  233 (390)
T KOG3914|consen  221 DITSGKLLDTCDL  233 (390)
T ss_pred             ecccCCcccccch
Confidence            9999998866543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.00  E-value=1.6e-09  Score=103.06  Aligned_cols=208  Identities=17%  Similarity=0.260  Sum_probs=150.0

Q ss_pred             cceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCcc-eecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          216 TCKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTGSL-SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      .....+.||..+|+.+.|+|. ...+++++.|-.+..||+.+... +.....-....+.+.|+-....+++.+..+.|.+
T Consensus       105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v  184 (1081)
T KOG0309|consen  105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV  184 (1081)
T ss_pred             ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence            355678899999999999985 45889999999999999976543 4444444556678999887777888888889999


Q ss_pred             EEcCCCC-eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EeeeeeecCceeEEEEcCCCC--EEEE
Q 010470          294 WDVNSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--CVNTIIFHSNCNALAFSMDGQ--TIFS  368 (510)
Q Consensus       294 wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~i~~i~~~~~~~--~l~~  368 (510)
                      ||++.|. ++..+++|...|..+.|+......+.+++.||+|+.||.....  ...++....++.--++.|-|.  ++.-
T Consensus       185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp  264 (1081)
T KOG0309|consen  185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP  264 (1081)
T ss_pred             EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence            9998764 8889999999999999987667789999999999999987543  333344445566666666443  2221


Q ss_pred             ecCCCcEEEEECC----------CCceeeeecccccccEEEEEEcCC----------CCEEEEEecCCcEEEEEcC
Q 010470          369 GHIDGNLRLWDIQ----------TGKLLSEVAAHSLAAVTSISLSRS----------GNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       369 ~~~dg~i~i~d~~----------~~~~~~~~~~~~~~~i~~i~~~~~----------~~~l~~~~~d~~i~i~d~~  424 (510)
                      --.+..+.+++.+          ...++..|.+|. ..|....|-..          .-.|++-+.|..+++|-+.
T Consensus       265 ~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~-D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  265 MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD-DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             ccCCeeeeeccccchhhhhccccCCcceeeecCcc-hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            1112234444332          235777888876 55554444321          2268999999999999875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.00  E-value=2.3e-07  Score=79.40  Aligned_cols=199  Identities=13%  Similarity=0.157  Sum_probs=118.2

Q ss_pred             eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc-------cccceeEEEEecCC------CEEEEEeCCCeEEEE
Q 010470          228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-------CLGSVLDLAITHDN------RSVIAASSSNNLYVW  294 (510)
Q Consensus       228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~------~~l~~~~~d~~i~iw  294 (510)
                      =.-++||||+..||.+.+.|+|++||+.... +..+..       -...|..+.|.+..      ..|++-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            4678999999999999999999999997433 223221       23466777775432      257777888888877


Q ss_pred             EcCCC-----CeeEeec---CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE
Q 010470          295 DVNSG-----RVRHTLT---GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI  366 (510)
Q Consensus       295 d~~~~-----~~~~~~~---~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l  366 (510)
                      -+..+     +..+.+.   .+...|.++.++| ..++|+.||....      .++.   .......+++-.+..+..+.
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~------~~~~---s~a~~~GLtaWRiL~~~Pyy  194 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQN------QDGM---SKASSCGLTAWRILSDSPYY  194 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCC------CCcc---ccccccCceEEEEcCCCCcE
Confidence            76332     2333333   2467899999999 6677776664321      0000   00001112222221111111


Q ss_pred             --EEecCCC------cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470          367 --FSGHIDG------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR  438 (510)
Q Consensus       367 --~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  438 (510)
                        ++...++      +..+|.+-+.+.... .......|..|..||||..|++...+|.|.+|++.+......+.....+
T Consensus       195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  195 KQVTSSEDDITASSKRRGLLRIPSFKFFSR-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             EEccccCccccccccccceeeccceeeeec-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence              1111111      112333332222221 1223378999999999999999999999999999987777666554433

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.99  E-value=1.4e-06  Score=73.33  Aligned_cols=143  Identities=13%  Similarity=0.069  Sum_probs=99.0

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEE-E
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCA-V  315 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-i  315 (510)
                      ..+++.|+..+.+.-.|..+|+....-. -...+-+-+.- -|++++.|+..|.+++.+..+|.....+... +.|.+ .
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccce
Confidence            4578889999999999999988755422 12233322222 4778999999999999999999888777643 23332 2


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 010470          316 DVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTG  383 (510)
Q Consensus       316 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  383 (510)
                      ...+ ++..+..|+.|+..+..|.++..++......+. ..+-++.|-...|+.+...|.+.--.....
T Consensus       100 ~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  100 QCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            3334 789999999999999999999999988776654 345556663334454555566555554433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=9.8e-08  Score=93.00  Aligned_cols=203  Identities=16%  Similarity=0.219  Sum_probs=134.0

Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCc-eEEEEEecCCCCEEEEEeCCC-----cEEEEECCCC-----
Q 010470          274 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK-VCAVDVSKISSRHVVSAAYDR-----TLKVWDLHKG-----  342 (510)
Q Consensus       274 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~-----  342 (510)
                      +|++.+..++.|+.+|.|.+++ ++-+.++.+..+... |..+.... ..+++++.+.|+     .++|||++.-     
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            5678899999999999998887 445556777777766 44444333 557888877765     4899998632     


Q ss_pred             -eEe---eeee-----ecCceeEEEEcCCCCEEEEecCCCcEEEEECC---CCceeeeecccccccEEEEEEcCCCCEEE
Q 010470          343 -YCV---NTII-----FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ---TGKLLSEVAAHSLAAVTSISLSRSGNIIL  410 (510)
Q Consensus       343 -~~~---~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  410 (510)
                       .++   +.+.     .+.++.+++++.+-+.+++|-.+|.|..+.-.   .......+......+|+.+.+..++..++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence             233   2222     12457889999999999999999999998532   11112223333448999999999988744


Q ss_pred             EEecCCcEEEEEcCCcee-eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc-ccCc
Q 010470          411 TSGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK-EHTA  483 (510)
Q Consensus       411 ~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~  483 (510)
                      ....-..|.+|.+....+ ...+..++....    +..+++....+++++.. .+.+|+.+...+-..+. +|..
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~ln----Css~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLN----CSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccce----eeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeE
Confidence            444456788999874442 233444444443    35666655535555544 49999988766666665 5543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=3e-08  Score=95.73  Aligned_cols=186  Identities=19%  Similarity=0.223  Sum_probs=133.7

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  347 (510)
                      ..++|++++  ++.++.|+.+|.|++++.. +.+ .+...|...       ..+|.++++|+.||.|.|..+-++....+
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            455666664  7789999999999999965 333 333335443       23799999999999999999999999999


Q ss_pred             eeecCceeEEEEcCC-----CCEEEEecCCCcEEEEECCC-CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          348 IIFHSNCNALAFSMD-----GQTIFSGHIDGNLRLWDIQT-GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       348 ~~~~~~i~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      +..+.++.+++++|+     .+.+++|+.-| +.++.-+- |...........++|.++.|.  |++++-++.+| |+||
T Consensus       109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy  184 (846)
T KOG2066|consen  109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY  184 (846)
T ss_pred             EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence            999999999999997     56789999888 77776331 111111222333899999995  77887776665 8899


Q ss_pred             EcCCceeeeEeecCCCeeec--CceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          422 DIRSLEVCGSLRATGNRVAS--NWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      |+.+.+.+..+..+...+..  ....+.|.++.+ |+.|-.| +|+|..+.
T Consensus       185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKICSIK  233 (846)
T ss_pred             eccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence            99998888777665543332  123466766554 4445444 58888887

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=3.2e-09  Score=92.19  Aligned_cols=158  Identities=19%  Similarity=0.317  Sum_probs=123.9

Q ss_pred             EEec--CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC-----CeeEe
Q 010470          232 LFEY--NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-----RVRHT  304 (510)
Q Consensus       232 ~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~  304 (510)
                      +|+-  .|-. ++.|.+-.|-+-|+++|-. ..+ ...+.|.++.|...+++++.|+.+|.|..+|++..     .+.+.
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccc-ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            5553  2334 5555677888999988753 223 36788999999998999999999999999999864     24444


Q ss_pred             ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---eeeeeecCc---eeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTIIFHSN---CNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~---i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                      +. |...|+++.....++.+|++.+.+|.|++||++--++   +.++.+|.+   ..-+-+.+....+++++.|...+||
T Consensus       295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW  373 (425)
T ss_pred             EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence            44 8999999988776788999999999999999987666   777777643   3445566777888999999999999


Q ss_pred             ECCCCceeeeecccc
Q 010470          379 DIQTGKLLSEVAAHS  393 (510)
Q Consensus       379 d~~~~~~~~~~~~~~  393 (510)
                      .++.|..+.++....
T Consensus       374 sl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  374 SLDSGHLLCTIPFPY  388 (425)
T ss_pred             ecccCceeeccCCCC
Confidence            999999888877553

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=3.9e-08  Score=95.04  Aligned_cols=183  Identities=11%  Similarity=0.117  Sum_probs=133.2

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  304 (510)
                      ...++|++++  +++|+-|+.+|.|++++.+.. . .+...|+..      ..+|.++++|+.||+|.|..+.+.+...+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3567888887  679999999999999998733 3 444445444      56899999999999999999998887777


Q ss_pred             ecCCCCceEEEEEecC----CCCEEEEEeCCCcEEEEECC---CCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE
Q 010470          305 LTGHTDKVCAVDVSKI----SSRHVVSAAYDRTLKVWDLH---KGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL  377 (510)
Q Consensus       305 ~~~~~~~v~~i~~~~~----~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  377 (510)
                      +. ...++.+++++|+    ..+.+++||.-| +.++.-+   ....+......++|.+++|.  |++++-++.+| |++
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV  183 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence            76 4578999999994    357899999888 7776532   11222222344679999995  89999888776 999


Q ss_pred             EECCCCceeeeeccccc-----ccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          378 WDIQTGKLLSEVAAHSL-----AAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       378 ~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      ||+.+++.+..+..+..     .....+.|.++.+ |+.| ...+|+|..++
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            99999888877765541     1234567766544 4444 44478888777

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=2.4e-06  Score=76.32  Aligned_cols=244  Identities=17%  Similarity=0.166  Sum_probs=143.3

Q ss_pred             eeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEE
Q 010470          218 KHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWD  295 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd  295 (510)
                      ..-+.+|...|..++|||... ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|.. +|++|..+|.|.|||
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            345677888999999999776 7888999999999999999988888877 8899999987765 566677899999999


Q ss_pred             cCCCC-eeEeecC--CCCceEEEEEecC-----CCCEEEEEeCCCcEEEEECC----CCeEeeeeeecCceeEEEEcCCC
Q 010470          296 VNSGR-VRHTLTG--HTDKVCAVDVSKI-----SSRHVVSAAYDRTLKVWDLH----KGYCVNTIIFHSNCNALAFSMDG  363 (510)
Q Consensus       296 ~~~~~-~~~~~~~--~~~~v~~i~~~~~-----~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~i~~i~~~~~~  363 (510)
                      ++..+ +...+.+  ...+|..++..+.     .+.+++..+.  .+..|++.    ...++..+..++.+.++.+++..
T Consensus       265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s  342 (463)
T KOG1645|consen  265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVS  342 (463)
T ss_pred             ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecCcc
Confidence            98654 2222222  2345555443331     2333443332  24455543    12223333334556666776655


Q ss_pred             CEEEEecCC-Cc------EE-EEECCCCceeeeecccc-cc------cEEEEEEcCCCCEEEE-EecCCcEEEEEcCCce
Q 010470          364 QTIFSGHID-GN------LR-LWDIQTGKLLSEVAAHS-LA------AVTSISLSRSGNIILT-SGRDNLHNLFDIRSLE  427 (510)
Q Consensus       364 ~~l~~~~~d-g~------i~-i~d~~~~~~~~~~~~~~-~~------~i~~i~~~~~~~~l~~-~~~d~~i~i~d~~~~~  427 (510)
                      +.++..... .+      |- --|.++|.++....... .+      .-..+.-.+++++++. ++..+.+.+||..+++
T Consensus       343 nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e  422 (463)
T KOG1645|consen  343 NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE  422 (463)
T ss_pred             ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence            555543322 10      00 11223444433222111 01      0111222345555544 4455789999999999


Q ss_pred             eeeEeecCCCeeecCceeEEE-cCC-CCEEEEEcCCCeEEEEeCC
Q 010470          428 VCGSLRATGNRVASNWSRSCI-SPD-ESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~-s~~-~~~l~~~~~dg~i~iwd~~  470 (510)
                      .+..+.... ++..    ++. .-+ +.||++-. |..++||...
T Consensus       423 vvQ~l~~~e-pv~D----icp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  423 VVQTLALSE-PVLD----ICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eeeecccCc-ceee----cceeecCCcchhhhee-cceEEEEecC
Confidence            998887652 2211    222 223 44666555 5568888643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.93  E-value=1.1e-06  Score=86.53  Aligned_cols=234  Identities=16%  Similarity=0.156  Sum_probs=147.3

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceecccccccc-----e-eEEEEecCCCEEEEEe---------CCCeEEEEEcCCCCee
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS-----V-LDLAITHDNRSVIAAS---------SSNNLYVWDVNSGRVR  302 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v-~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~  302 (510)
                      ..++.++.+|.|.-+|..+|+.+..+......     + ....+.  +..+++++         .+|.+..+|..+|+.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            67888888999999999999987665532220     1 112222  24455554         3678999999999988


Q ss_pred             EeecCCCCc--------------------eE-EEEEecCCCCEEEEEeCCC------------------cEEEEECCCCe
Q 010470          303 HTLTGHTDK--------------------VC-AVDVSKISSRHVVSAAYDR------------------TLKVWDLHKGY  343 (510)
Q Consensus       303 ~~~~~~~~~--------------------v~-~i~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~  343 (510)
                      ..+......                    +. ...+.+ .+..++.++.++                  .|.-+|..+|+
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            877542110                    11 123333 356677776554                  79999999999


Q ss_pred             EeeeeeecCc-e------eEEEEc----CCCC---EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEE
Q 010470          344 CVNTIIFHSN-C------NALAFS----MDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII  409 (510)
Q Consensus       344 ~~~~~~~~~~-i------~~i~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  409 (510)
                      .+..+..... .      ....+.    -+|.   .+++++.+|.++.+|..+|+.+.......    ..+..+|  ..+
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~v  341 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLV  341 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec----cccccCC--ceE
Confidence            9888753211 1      111111    1343   57788899999999999999888765321    1123333  223


Q ss_pred             EEE------------------ecCCcEEEEEcCCceeeeEeecCCCeee----cCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470          410 LTS------------------GRDNLHNLFDIRSLEVCGSLRATGNRVA----SNWSRSCISPDESYVAAGSADGSVYIW  467 (510)
Q Consensus       410 ~~~------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~l~~~~~dg~i~iw  467 (510)
                      +.+                  ..+|.+.-+|+.+++.+-..........    ...........+.+|++++.||.|+.+
T Consensus       342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al  421 (488)
T cd00216         342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF  421 (488)
T ss_pred             EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence            222                  2357888889998888776654411100    000000112356789999999999999


Q ss_pred             eCCCcceeecccc
Q 010470          468 SISKADIVRTLKE  480 (510)
Q Consensus       468 d~~~~~~~~~~~~  480 (510)
                      |..+|+.+..++.
T Consensus       422 d~~tG~~lW~~~~  434 (488)
T cd00216         422 DATTGKELWKFRT  434 (488)
T ss_pred             ECCCCceeeEEEC
Confidence            9999999888764

The alignment model contains an 8-bladed beta-propeller.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.90  E-value=7.7e-07  Score=90.23  Aligned_cols=241  Identities=12%  Similarity=0.105  Sum_probs=144.3

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      ..+.|.++.|..++.-++.+..+|.|.+-|..+.... ......+.|.+++|+||+..++..+..+++.+-+ .+..++.
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~  144 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA  144 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence            3468999999999999999999999999988766532 2233467899999999999999999988877654 2222222


Q ss_pred             eecCC-----CCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEeeeeeecCceeEEEEcCCCCEEEE-----ecCC
Q 010470          304 TLTGH-----TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYCVNTIIFHSNCNALAFSMDGQTIFS-----GHID  372 (510)
Q Consensus       304 ~~~~~-----~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~-----~~~d  372 (510)
                      ...-+     .+....+-|-. . ..=+-|+ .|.....+... .+.......++.-++|+|--||.++++     ....
T Consensus       145 E~~L~~d~~~~sk~v~VGwGr-k-eTqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGR-K-ETQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             ccccccccccccccceecccc-c-ceeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence            21111     11222233322 0 1111111 11111111110 011111122334567999999999987     2333


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe---cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG---RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                      ..|++||-. |.. ........+--.+++|-|.|..+++-.   .++.|.+|.-..... ..|......-...+..++|+
T Consensus       222 RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  222 RKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-GEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             eeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-cccccCCcccccchheeeec
Confidence            689999965 433 333333335667899999999998754   455788887543221 22211111111124559999


Q ss_pred             CCCCEEEE---EcCCCeEEEEeCCCc
Q 010470          450 PDESYVAA---GSADGSVYIWSISKA  472 (510)
Q Consensus       450 ~~~~~l~~---~~~dg~i~iwd~~~~  472 (510)
                      .++..|++   ......|++|-+.+.
T Consensus       299 s~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  299 SNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCCCceeeeecccccceEEEEEecCe
Confidence            99999988   444556999988763

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.86  E-value=7.2e-09  Score=62.56  Aligned_cols=38  Identities=29%  Similarity=0.596  Sum_probs=36.1

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEe
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD  253 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  253 (510)
                      ++..++.+|.++|++++|+|++.+|++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=8.7e-06  Score=77.44  Aligned_cols=256  Identities=18%  Similarity=0.219  Sum_probs=166.7

Q ss_pred             EEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC-CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEE
Q 010470          249 IKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS  327 (510)
Q Consensus       249 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s  327 (510)
                      +.+++..+......+..+. ....+...+++..+..... ...+...+...................+.+++...+.+++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~   91 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT   91 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence            5555544444433333222 4566788888865555542 2245555544222222122111344567888855556777


Q ss_pred             EeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC---CCcEEEEECCCCceeeeecccccccEEEEEEcC
Q 010470          328 AAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI---DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR  404 (510)
Q Consensus       328 ~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~  404 (510)
                      ...++.|.+.|..+............+..++++|++..++++..   ++.+.+.|..+++......... .+ ..++++|
T Consensus        92 ~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p  169 (381)
T COG3391          92 TGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDP  169 (381)
T ss_pred             cCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECC
Confidence            77779999999988888888887778899999999988876654   6899999999888888755443 34 8999999


Q ss_pred             CCCEEEEEe-cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCcceeec-cc
Q 010470          405 SGNIILTSG-RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVRT-LK  479 (510)
Q Consensus       405 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~-~~  479 (510)
                      +|..+++.. .++.+.++|.......................+.++|+|.++++....   +.+...|..++..... ..
T Consensus       170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~  249 (381)
T COG3391         170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP  249 (381)
T ss_pred             CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence            999666655 788999999876655531101111222223347899999976665443   5899999988877665 22


Q ss_pred             ccCcCEEEEEEeCCCCcEEEeeCC-CeEE
Q 010470          480 EHTAPVLSCSWSGLGKPLASADKN-GVVC  507 (510)
Q Consensus       480 ~~~~~v~~~~~~~~~~~l~s~~~d-g~i~  507 (510)
                      ........+..+|+|..+.+.... +.+.
T Consensus       250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~  278 (381)
T COG3391         250 VGSGAPRGVAVDPAGKAAYVANSQGGTVS  278 (381)
T ss_pred             cccCCCCceeECCCCCEEEEEecCCCeEE
Confidence            211145678999999987776433 4444

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.83  E-value=1e-06  Score=85.21  Aligned_cols=217  Identities=11%  Similarity=0.032  Sum_probs=135.5

Q ss_pred             EecCCCEEEEe-eCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC----eEEEEEcCCCCeeEeecC
Q 010470          233 FEYNSARLISG-GQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN----NLYVWDVNSGRVRHTLTG  307 (510)
Q Consensus       233 ~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~  307 (510)
                      ++|||+.+... -..+.+.+.|.++.+...++.- .+....+.++|+|+++++.+.+.    ++..-+..+......+..
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            45566655332 2346677888887776666543 22446788999999998887432    233332222111111111


Q ss_pred             CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-----CeEeeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECC
Q 010470          308 HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQ  381 (510)
Q Consensus       308 ~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~  381 (510)
                      ..  +.  .+.+ ++++...  .++.|.++|..+     ...+..+..+..+..+.++|||+++++++ .+.+|.|+|+.
T Consensus       279 ~~--ie--a~vk-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~  351 (635)
T PRK02888        279 AR--IE--EAVK-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR  351 (635)
T ss_pred             HH--HH--Hhhh-CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence            00  00  1223 4555554  267899999998     46777788888899999999999988654 58899999998


Q ss_pred             CCce------------eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC----------ceeeeEeecCCCee
Q 010470          382 TGKL------------LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS----------LEVCGSLRATGNRV  439 (510)
Q Consensus       382 ~~~~------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~~  439 (510)
                      +.+.            +......  .......|+++|+...+-.-|..|..|++.+          ...+..+..+..+.
T Consensus       352 k~k~~~~~~~~~~~~vvaevevG--lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg  429 (635)
T PRK02888        352 KLDDLFDGKIKPRDAVVAEPELG--LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG  429 (635)
T ss_pred             hhhhhhhccCCccceEEEeeccC--CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence            7553            3333332  4455688999999888889999999999875          34444444443332


Q ss_pred             ecCc-eeEEEcCCCCEEEEEc
Q 010470          440 ASNW-SRSCISPDESYVAAGS  459 (510)
Q Consensus       440 ~~~~-~~~~~s~~~~~l~~~~  459 (510)
                      .... ..=.-.|||+||++.+
T Consensus       430 h~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        430 HNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             eeeecCCCcCCCCCCEEEEcc
Confidence            2100 0011267888887764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.83  E-value=3.7e-06  Score=79.39  Aligned_cols=260  Identities=21%  Similarity=0.208  Sum_probs=142.5

Q ss_pred             ecCCCEEEEee---------CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470          234 EYNSARLISGG---------QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       234 s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  304 (510)
                      |||+++++...         ..+.+.|||+.++........ ...+....|+|+|+.++.... +.|++++..++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEe
Confidence            57888776632         246799999998776444333 678899999999999888864 6899998877643322


Q ss_pred             e-cC-------C---------CCceEEEEEecCCCCEEEEEeC-CCc---------------------------------
Q 010470          305 L-TG-------H---------TDKVCAVDVSKISSRHVVSAAY-DRT---------------------------------  333 (510)
Q Consensus       305 ~-~~-------~---------~~~v~~i~~~~~~~~~l~s~~~-dg~---------------------------------  333 (510)
                      - .+       -         -+.-.++-|+| ++..|+.... +..                                 
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~  157 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR  157 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred             ccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence            1 11       0         11235677999 6666664432 222                                 


Q ss_pred             --EEEEECCCCeEeeeeee------cCceeEEEEcCCCCEEEE--ecCCC---cEEEEECCCCceeeeecccccccE---
Q 010470          334 --LKVWDLHKGYCVNTIIF------HSNCNALAFSMDGQTIFS--GHIDG---NLRLWDIQTGKLLSEVAAHSLAAV---  397 (510)
Q Consensus       334 --i~iwd~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~--~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i---  397 (510)
                        +.|+|+.+++....-..      ..-+..+.|.+++..|++  ...+.   .+.++|..++...........+.+   
T Consensus       158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~  237 (353)
T PF00930_consen  158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY  237 (353)
T ss_dssp             EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred             eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence              33455555543211111      112678899998884443  23322   467778877655433332221222   


Q ss_pred             EEEEEc-CCCC-EEEEEecCCc--EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEE-EEcCC----CeEEEEe
Q 010470          398 TSISLS-RSGN-IILTSGRDNL--HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA-AGSAD----GSVYIWS  468 (510)
Q Consensus       398 ~~i~~~-~~~~-~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~d----g~i~iwd  468 (510)
                      ..+.|. +++. ++.....+|.  |.+++...+... .+......+..   .+.++++++.|+ ++..+    ..|+.-+
T Consensus       238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~---i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTS---ILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEE---EEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             cccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecc---cceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            244444 5554 5555667774  555566655533 22222222211   267888877654 44432    3566667


Q ss_pred             CCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          469 ISKADIVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       469 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      +..+..+..+....+....+.|||+|++++..
T Consensus       314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             TTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             eCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence            76233334444333222799999999977643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.3e-06  Score=85.42  Aligned_cols=202  Identities=13%  Similarity=0.178  Sum_probs=134.0

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccc-eeEEEEecCCCEEEEEeCCC-----eEEEEEcCCC-
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS-VLDLAITHDNRSVIAASSSN-----NLYVWDVNSG-  299 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~-  299 (510)
                      .|+|  |++.+..++.|+.+|.|.+.+-. .+.+..+..+... |..+.......+|++.+.|+     .++||+++.- 
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4444  57888999999999999888743 3444667777666 55444444446777776554     5899998642 


Q ss_pred             -----Cee--EeecC-----CCCceEEEEEecCCCCEEEEEeCCCcEEEEECC--C--C-eEeeeeeecCceeEEEEcCC
Q 010470          300 -----RVR--HTLTG-----HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH--K--G-YCVNTIIFHSNCNALAFSMD  362 (510)
Q Consensus       300 -----~~~--~~~~~-----~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~--~--~-~~~~~~~~~~~i~~i~~~~~  362 (510)
                           .++  +.+..     ...++.+++++. +-..+++|-.+|.|..+.-.  .  | +......+..+|+.+.+..+
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                 233  12222     246788899988 68889999999999988421  1  1 22223344567999999988


Q ss_pred             CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470          363 GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       363 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  433 (510)
                      +..++.......|.+|.+....+......+++.+..|..+++....+++++ +..+.+|+.....+...+.
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            887333333357999998743334443444447899999988666455553 4578999988766666665

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.81  E-value=1.2e-05  Score=72.03  Aligned_cols=257  Identities=13%  Similarity=0.129  Sum_probs=159.9

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC----------CCeEEEEEcCCCCeeEeecCCCC------
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS----------SNNLYVWDVNSGRVRHTLTGHTD------  310 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~------  310 (510)
                      +.+.|+|.++++.+..+...  -.-.+..+|+++.+++++.          .-.|.+||..+..+...+.-...      
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            58999999999987776532  2334678999999987642          34799999999877765532221      


Q ss_pred             -ceEEEEEecCCCCEEEEEe--CCCcEEEEECCCCeEeeeeeecCceeEEEEcCC-CCEEEEecCCCcEEEEECC-CCce
Q 010470          311 -KVCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMD-GQTIFSGHIDGNLRLWDIQ-TGKL  385 (510)
Q Consensus       311 -~v~~i~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~-~~~~  385 (510)
                       ....+.++. ++++++...  --.+|.|.|+..++.+..+..++..   -+.|. .+-|.+-|.||.+.-+.+. .|+.
T Consensus        95 ~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~---~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   95 PYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCW---LIYPSGNRGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             --GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEE---EEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred             ccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEE---EEEecCCCceEEEecCCceEEEEECCCCCE
Confidence             112245555 555555432  2457888888888887777665532   22232 2457777889999988887 4554


Q ss_pred             eeee----cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee--eEeec------CCCeeecCceeEEEcCCCC
Q 010470          386 LSEV----AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC--GSLRA------TGNRVASNWSRSCISPDES  453 (510)
Q Consensus       386 ~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~------~~~~~~~~~~~~~~s~~~~  453 (510)
                      ....    .......+..-.++..+..++..+.+|.|+-.|+......  ..+..      ....-...|..+++++..+
T Consensus       171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~  250 (342)
T PF06433_consen  171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG  250 (342)
T ss_dssp             EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred             eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence            4222    1111112223344555666666788999999888764432  22221      1234445667788988666


Q ss_pred             EEEEEcC---CC-------eEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEe-eCCCeEEEcC
Q 010470          454 YVAAGSA---DG-------SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASA-DKNGVVCVWT  510 (510)
Q Consensus       454 ~l~~~~~---dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~dg~i~iwd  510 (510)
                      .|++--.   +|       .|.+||+.+++.+..+.. ..++.++..+.+.+ .|++. ..++.+.+||
T Consensus       251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            6555322   22       488889999999999874 24577999998876 55544 4578999986

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=9.6e-09  Score=62.00  Aligned_cols=39  Identities=36%  Similarity=0.659  Sum_probs=36.5

Q ss_pred             cceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          472 ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       472 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++++.++.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=3.4e-05  Score=73.41  Aligned_cols=261  Identities=15%  Similarity=0.153  Sum_probs=170.4

Q ss_pred             ceEEEEEecCCCEEEEee-CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEe
Q 010470          227 GCASILFEYNSARLISGG-QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~  304 (510)
                      ....+.+.++|..+.... ....+...+...................++.++.+..+++.. .++.|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            566677888885544333 222455555442222221111114456788888888655555 558999999887777766


Q ss_pred             ecCCCCceEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEEC
Q 010470          305 LTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDI  380 (510)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~  380 (510)
                      ..... ....+++.| ++..++.+..   ++.+.+.|..+++.+...........++++|+|..+++.. .++.|.++|.
T Consensus       112 ~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~  189 (381)
T COG3391         112 IPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDT  189 (381)
T ss_pred             eeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeC
Confidence            65332 567788998 5544444443   7999999999999888866555568999999999766554 7889999997


Q ss_pred             CCCceeeeec----ccccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          381 QTGKLLSEVA----AHSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       381 ~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      ....... -.    .........+.++|+|..+++....   +.+...|..++............   ....+.++|+|.
T Consensus       190 ~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~---~~~~v~~~p~g~  265 (381)
T COG3391         190 SGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG---APRGVAVDPAGK  265 (381)
T ss_pred             CCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC---CCCceeECCCCC
Confidence            6655443 11    1111456779999999977766554   48999999887776552221111   112278899999


Q ss_pred             EEEEEcC-CCeEEEEeCCCcceeecccccC---cCEEEEEEeCC
Q 010470          454 YVAAGSA-DGSVYIWSISKADIVRTLKEHT---APVLSCSWSGL  493 (510)
Q Consensus       454 ~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~  493 (510)
                      ++.+... .+.+.+.|..+......+....   ..+..+++.+.
T Consensus       266 ~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         266 AAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             EEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            9888744 4889999988877766554322   23445555443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.72  E-value=8.1e-06  Score=78.05  Aligned_cols=228  Identities=13%  Similarity=0.112  Sum_probs=120.5

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN  297 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  297 (510)
                      ...+....-.+..+.++|+|+++++++ ||...||.....+..     ..+.-...+|.+.++ +++-..++.|.|+.--
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k-----~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~   97 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK-----AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNF   97 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE-----EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc-----ccCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence            333444555688999999999998854 788888874333221     134456789998554 6666668889997432


Q ss_pred             CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE
Q 010470          298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL  377 (510)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  377 (510)
                      +......+... ..+..+-  +  |.+|...+ ++.|.+||+.+++.+..+.... |..+.|+++|.+++..+.+ .+++
T Consensus        98 ~~~~~k~i~~~-~~~~~If--~--G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~i  169 (443)
T PF04053_consen   98 KNEVVKSIKLP-FSVEKIF--G--GNLLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYI  169 (443)
T ss_dssp             EE-TT-----S-S-EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEE
T ss_pred             ccccceEEcCC-cccceEE--c--CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEE
Confidence            33332233311 2233332  2  66666666 4589999999999999988664 8999999999999988765 7888


Q ss_pred             EECCCC-----------ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeE
Q 010470          378 WDIQTG-----------KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS  446 (510)
Q Consensus       378 ~d~~~~-----------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  446 (510)
                      ++....           .....+..-. ..|.+..|..+  .++-.+.. .++.  +.+|+. .++..-..+..    -+
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~y----ll  238 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLY----LL  238 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--E----EE
T ss_pred             EEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceE----EE
Confidence            775332           0222222212 67888888765  44444444 5554  333332 22222222222    25


Q ss_pred             EEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          447 CISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       447 ~~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      .+.|..+.++....|+.|..+.++.
T Consensus       239 gy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  239 GYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EEEccCCEEEEEECCCCEEEEEECH
Confidence            6677777888888888888887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.71  E-value=4.1e-05  Score=68.81  Aligned_cols=243  Identities=13%  Similarity=0.178  Sum_probs=149.2

Q ss_pred             EEEEEecCCCEEEEeeC----------CCeEEEEeCCCCcceeccccc-------ccceeEEEEecCCCEEEEEeC--CC
Q 010470          229 ASILFEYNSARLISGGQ----------DKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITHDNRSVIAASS--SN  289 (510)
Q Consensus       229 ~~~~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~  289 (510)
                      -.+.++|+|+.+++++.          .-.|.+||..+..+...+.-.       ......+.++.|++++++...  -.
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            34678999999887542          346999999988765533211       122345688899998888753  45


Q ss_pred             eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEeeeee--ec---Cc-eeEEEEcCC
Q 010470          290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNTII--FH---SN-CNALAFSMD  362 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~--~~---~~-i~~i~~~~~  362 (510)
                      .|.|.|+..++.+..+....    |.-..|..+.-|.+.+.||.+.-..+. .|+...+..  +.   .+ +..-.+...
T Consensus       119 SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             eEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            79999999888887776322    222234445668888889999999887 555543221  11   11 233344445


Q ss_pred             CCEEEEecCCCcEEEEECCCCcee--eeeccc---------ccccEEEEEEcCCCCEEEEEecC--------C--cEEEE
Q 010470          363 GQTIFSGHIDGNLRLWDIQTGKLL--SEVAAH---------SLAAVTSISLSRSGNIILTSGRD--------N--LHNLF  421 (510)
Q Consensus       363 ~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~d--------~--~i~i~  421 (510)
                      +..++.-+.+|.|+-.|+......  ..+...         ..+.-.-+++++..+.|++--..        +  .|.+|
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            555666778899999998655422  122110         01334457787766655553221        1  58888


Q ss_pred             EcCCceeeeEeecCCCeeecCceeEEEcCCCC-EEEE-EcCCCeEEEEeCCCcceeecccc
Q 010470          422 DIRSLEVCGSLRATGNRVASNWSRSCISPDES-YVAA-GSADGSVYIWSISKADIVRTLKE  480 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~  480 (510)
                      |+.+++.+..+..... +    .++.++.+.+ +|++ ...++.+.+||..+|+.+.++..
T Consensus       275 D~~t~krv~Ri~l~~~-~----~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  275 DLKTHKRVARIPLEHP-I----DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ETTTTEEEEEEEEEEE-E----SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ECCCCeEEEEEeCCCc-c----ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            9999999888875432 2    2377888766 5544 45689999999999999888764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.71  E-value=1.2e-05  Score=70.31  Aligned_cols=203  Identities=9%  Similarity=0.123  Sum_probs=120.3

Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  381 (510)
                      .+.+-...+.+++|+|..+.++++....+.|..++. +|+.++.+...  ...-.|++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            455666679999999966777888888899999997 58888887665  468899998888887777778999999884


Q ss_pred             CCc------eeeeec--c--cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC---ceeeeEee---cC-CCeeecCce
Q 010470          382 TGK------LLSEVA--A--HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS---LEVCGSLR---AT-GNRVASNWS  444 (510)
Q Consensus       382 ~~~------~~~~~~--~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~---~~-~~~~~~~~~  444 (510)
                      ...      ....+.  .  .....+-.++|+|.++.|+++....-..+|.+..   ........   .. .......++
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      111222  1  2335689999999988888877776666776653   11111111   01 122233466


Q ss_pred             eEEEcCC-CCEEEEEcCCCeEEEEeCCCcceeecccccC---------cCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          445 RSCISPD-ESYVAAGSADGSVYIWSISKADIVRTLKEHT---------APVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       445 ~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      .++++|. |.+++.+..+..|.++| .+|+++..+.-..         ...-+|+|.++|++.+++ .-+.+++|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            7888885 56677777788999999 6677665443211         246899999999755554 55566655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.69  E-value=6.5e-06  Score=83.78  Aligned_cols=196  Identities=16%  Similarity=0.127  Sum_probs=131.7

Q ss_pred             CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEEC----CCCc
Q 010470          309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDI----QTGK  384 (510)
Q Consensus       309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~----~~~~  384 (510)
                      .+.|.++.|.. +.+.++.+..+|.|.+-|..+....-.-.....|.+++|+||+..++..+..+++.+-+-    -..+
T Consensus        68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEec-ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            46899999987 778888888899999998877655444455677999999999999998888777766432    1111


Q ss_pred             ee-------------------eeecccc--------------------cccEEEEEEcCCCCEEEEEe----cC-CcEEE
Q 010470          385 LL-------------------SEVAAHS--------------------LAAVTSISLSRSGNIILTSG----RD-NLHNL  420 (510)
Q Consensus       385 ~~-------------------~~~~~~~--------------------~~~i~~i~~~~~~~~l~~~~----~d-~~i~i  420 (510)
                      ++                   ..|.+..                    ...-++|+|--||.++++..    .+ ..|+|
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            11                   1121110                    01234589999999998843    23 68999


Q ss_pred             EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE---cCCCeEEEEeCCC---cceeecccccCcCEEEEEEeCCC
Q 010470          421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG---SADGSVYIWSISK---ADIVRTLKEHTAPVLSCSWSGLG  494 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~---~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~  494 (510)
                      ||-. +..    .....+....-.+++|-|.|..+++-   ++|+.|.+|.-+.   |+..-.++.....|..++|+.++
T Consensus       227 ~drE-g~L----ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s  301 (1265)
T KOG1920|consen  227 YDRE-GAL----NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS  301 (1265)
T ss_pred             eccc-chh----hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence            9976 322    22222222223448999999999875   3466799998432   33333344445559999999999


Q ss_pred             CcEEE---eeCCCeEEEcC
Q 010470          495 KPLAS---ADKNGVVCVWT  510 (510)
Q Consensus       495 ~~l~s---~~~dg~i~iwd  510 (510)
                      ..|++   +.....|++|.
T Consensus       302 diLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  302 DILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             CceeeeecccccceEEEEE
Confidence            98887   44455599983

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.69  E-value=7.1e-05  Score=74.12  Aligned_cols=268  Identities=15%  Similarity=0.183  Sum_probs=162.0

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccc-ccee----------EEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCL-GSVL----------DLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  305 (510)
                      +..++.++.++.|.-+|..+|+.+..+.... ..+.          .+++  .+..++.++.|+.+..+|..+|+.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4577777888899999999998876654211 1111          1222  2456788889999999999999988776


Q ss_pred             cCCC----CceEE-EEEecCCCCEEEEEe------CCCcEEEEECCCCeEeeeeeecCc---------------------
Q 010470          306 TGHT----DKVCA-VDVSKISSRHVVSAA------YDRTLKVWDLHKGYCVNTIIFHSN---------------------  353 (510)
Q Consensus       306 ~~~~----~~v~~-i~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~---------------------  353 (510)
                      ....    ..+.+ ..+.  ++ .++.+.      .+|.|..+|..+|+.+..+.....                     
T Consensus       147 ~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw  223 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW  223 (527)
T ss_pred             ccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence            5311    11111 1111  33 445443      268999999999988776533210                     


Q ss_pred             ------------eeEEEEcCCCCEEEEecCC-----C-----------cEEEEECCCCceeeeeccccc--------ccE
Q 010470          354 ------------CNALAFSMDGQTIFSGHID-----G-----------NLRLWDIQTGKLLSEVAAHSL--------AAV  397 (510)
Q Consensus       354 ------------i~~i~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~--------~~i  397 (510)
                                  -..+++.|...+++.+..+     +           .|.-.|+++|+....+...+.        ...
T Consensus       224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence                        1234666766677765522     2           577789999998877764321        122


Q ss_pred             EEEEEcCCCC---EEEEEecCCcEEEEEcCCceeeeE--------ee---c-C-------------------------CC
Q 010470          398 TSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGS--------LR---A-T-------------------------GN  437 (510)
Q Consensus       398 ~~i~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~--------~~---~-~-------------------------~~  437 (510)
                      .-+.+..+|+   .++.+..+|.++++|..+++.+..        +.   . .                         ..
T Consensus       304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~  383 (527)
T TIGR03075       304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGF  383 (527)
T ss_pred             EEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCC
Confidence            2333445666   788999999999999999887521        10   0 0                         00


Q ss_pred             eeecCceeEEEcCCCCEEEEEcCC---------------------------------CeEEEEeCCCcceeecccccCcC
Q 010470          438 RVASNWSRSCISPDESYVAAGSAD---------------------------------GSVYIWSISKADIVRTLKEHTAP  484 (510)
Q Consensus       438 ~~~~~~~~~~~s~~~~~l~~~~~d---------------------------------g~i~iwd~~~~~~~~~~~~~~~~  484 (510)
                      .-...|..++++|+..+++....+                                 |.|.-+|+.+++...........
T Consensus       384 ~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~  463 (527)
T TIGR03075       384 LGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL  463 (527)
T ss_pred             cCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC
Confidence            001124446777776666554333                                 45777788888777665432211


Q ss_pred             EEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          485 VLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       485 v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..+. ..-.+..++.++.||.++.+|
T Consensus       464 ~~~~-l~t~g~lvf~g~~~G~l~a~D  488 (527)
T TIGR03075       464 WGGV-LATAGDLVFYGTLEGYFKAFD  488 (527)
T ss_pred             CCcc-eEECCcEEEEECCCCeEEEEE
Confidence            1121 112445666777899988775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.68  E-value=5.6e-05  Score=71.75  Aligned_cols=113  Identities=14%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             ccEEEEEEcCC-CCEEEEE----ecCCc----EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470          395 AAVTSISLSRS-GNIILTS----GRDNL----HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY  465 (510)
Q Consensus       395 ~~i~~i~~~~~-~~~l~~~----~~d~~----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  465 (510)
                      ..+.++.||-. .+.+.+.    +.+|.    ..+|++...+ ++......-+..+.+.+++++|+...++.|+.||+|.
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII  284 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence            34566777763 3333332    23332    3456665433 2233333334555667789999999999999999999


Q ss_pred             EEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          466 IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       466 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +||...+...  +....-.++.++|+|+|..+++|+..|.+.+||
T Consensus       285 LyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             EEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence            9998766333  223445678999999999999999999999997

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.66  E-value=1.7e-06  Score=84.45  Aligned_cols=109  Identities=9%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             EEEEEecCCCEEEEeeC----CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470          229 ASILFEYNSARLISGGQ----DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       229 ~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  304 (510)
                      +-..|+|...++++++-    .|+|.||- ++|.+..... ..-.++++||+|..-.|+.|-.-|.+.+|...+.+.-..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            34578888888877653    58898883 5565433221 223456799999998889998999999999877666666


Q ss_pred             ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 010470          305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH  340 (510)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~  340 (510)
                      ...|..+|..+.|+| +++.++++..-|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence            667999999999999 89999999999999999764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.66  E-value=5.9e-06  Score=79.33  Aligned_cols=116  Identities=18%  Similarity=0.218  Sum_probs=91.0

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee-
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR-  302 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-  302 (510)
                      ...|.--+++..+++++.|++-|.+++|+-..+.....-. +..+.+..++.+++..++++|+..|.|.++-++.+.+. 
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            3445566777889999999999999999998776543322 34556677788989999999999999999988764321 


Q ss_pred             ----Eee-cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470          303 ----HTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       303 ----~~~-~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                          ... ..|...|+++.|++ ++..+++|...|.|..-.+.+
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence                111 23788999999999 899999999999999988876

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.63  E-value=3.1e-06  Score=80.56  Aligned_cols=201  Identities=22%  Similarity=0.211  Sum_probs=123.0

Q ss_pred             eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE
Q 010470          290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI  366 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l  366 (510)
                      .+.+-|.. +.....+......+..-.|+|......+..-..   ..+.++|+.++...........-....|+|||+.|
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l  252 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence            34444433 555555655566677788888444433332222   35999999998877777766666778999999987


Q ss_pred             EE-ecCCCc--EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-C--cEEEEEcCCceeeeEeecCCCeee
Q 010470          367 FS-GHIDGN--LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-N--LHNLFDIRSLEVCGSLRATGNRVA  440 (510)
Q Consensus       367 ~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~  440 (510)
                      +. ...||.  |+++|+..+.... +.... +.-..-.|+|+|+.++..+.. |  .|.++++................ 
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-  329 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-  329 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCccee-cccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-
Confidence            74 445554  7777887666333 43332 444477899999988766543 4  56667776655432222222221 


Q ss_pred             cCceeEEEcCCCCEEEEEcCC-Ce--EEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEE
Q 010470          441 SNWSRSCISPDESYVAAGSAD-GS--VYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS  499 (510)
Q Consensus       441 ~~~~~~~~s~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  499 (510)
                          ...++|||++|+..+.. |.  |.+.|+.++..+..+. +......-+|.|+|..++.
T Consensus       330 ----~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~  386 (425)
T COG0823         330 ----NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMF  386 (425)
T ss_pred             ----CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEE
Confidence                25789999999877643 44  6777776655333332 2222334456666665544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.62  E-value=5.7e-05  Score=68.92  Aligned_cols=228  Identities=18%  Similarity=0.249  Sum_probs=134.6

Q ss_pred             cCCCEEEEeeCCCeEEEEeCC-CCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe---------
Q 010470          235 YNSARLISGGQDKSIKLWDTN-TGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT---------  304 (510)
Q Consensus       235 ~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---------  304 (510)
                      ..++.|+.|+.+| +.+++.. ........  +..+|..+...|+-+.+++-+. +.++++++..-.....         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEcC-CccEEEEchhhcccccccccccccc
Confidence            4578999999998 9999983 22222222  2334999999998887777654 9999999876443321         


Q ss_pred             -----ecCCCCceEEEE-EecCCCCEEEEEeCCCcEEEEECCCC-----eEeeeeeecCceeEEEEcCCCCEEEEecCCC
Q 010470          305 -----LTGHTDKVCAVD-VSKISSRHVVSAAYDRTLKVWDLHKG-----YCVNTIIFHSNCNALAFSMDGQTIFSGHIDG  373 (510)
Q Consensus       305 -----~~~~~~~v~~i~-~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg  373 (510)
                           .-.....+..++ .....+...+.......|.+|.....     ...+.+..+..+.+++|.  ++.+++|..+ 
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-  157 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-  157 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-
Confidence                 011223444444 11223334444444668888877642     466777788889999998  6777878755 


Q ss_pred             cEEEEECCCCceeeeecccc-----------cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee--EeecCCCeee
Q 010470          374 NLRLWDIQTGKLLSEVAAHS-----------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG--SLRATGNRVA  440 (510)
Q Consensus       374 ~i~i~d~~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~  440 (510)
                      ...+.|+.++.....+....           ..++..+.. +++.+|++.  +..-.+.|. .|+...  .+.-...+. 
T Consensus       158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~-  232 (275)
T PF00780_consen  158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQ-  232 (275)
T ss_pred             ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCchh-
Confidence            48888998776544332211           123333333 344555543  333333343 333222  222221111 


Q ss_pred             cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc
Q 010470          441 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH  481 (510)
Q Consensus       441 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  481 (510)
                          .+++  ...||++.+.++ |.||++.+++++..+...
T Consensus       233 ----~~~~--~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  233 ----SVAY--SSPYLIAFSSNS-IEVRSLETGELVQTIPLP  266 (275)
T ss_pred             ----EEEE--ECCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence                1333  445777777654 999999999988887643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.57  E-value=5.7e-05  Score=66.09  Aligned_cols=199  Identities=12%  Similarity=0.227  Sum_probs=113.7

Q ss_pred             eeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceeccccc-ccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          219 HKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGC-LGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      +.+.+-...+++++|+|+.+ ++++....+.|..++.. |+.+..+.-. .+..-.|++..++.++++.-.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34556666799999999765 55666677888888874 7777766432 466788999888887777767899999998


Q ss_pred             CCCC------eeEeec-----CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC---CeEeeeee---------ecCc
Q 010470          297 NSGR------VRHTLT-----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK---GYCVNTII---------FHSN  353 (510)
Q Consensus       297 ~~~~------~~~~~~-----~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~---------~~~~  353 (510)
                      ....      ....+.     .++..+-+++|.| .++.|+.+-...-..+|.+..   +..+....         .-..
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            4321      111221     2455689999999 445555555555555655542   11111111         1134


Q ss_pred             eeEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeecccc--------cccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          354 CNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--------LAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       354 i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      +.+++++|. |.+++.+..+..|..+| .+|+++..+....        ....-.|+|+++|++.+++ .-+..++|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            789999994 56666788888999999 6787766554332        1358899999999766655 45555444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.54  E-value=7.4e-05  Score=69.74  Aligned_cols=174  Identities=18%  Similarity=0.186  Sum_probs=107.5

Q ss_pred             CeEEEEeCCCCcceecccc-cccceeEEE---EecC----CCEEEEEeC---------C-CeEEEEEcCCC----CeeEe
Q 010470          247 KSIKLWDTNTGSLSSTLYG-CLGSVLDLA---ITHD----NRSVIAASS---------S-NNLYVWDVNSG----RVRHT  304 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~-~~~~v~~~~---~~~~----~~~l~~~~~---------d-~~i~iwd~~~~----~~~~~  304 (510)
                      +.|++.|..+...+.++.- ....+++++   +..+    ..++++|+.         . |.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3577888777766555432 222334333   3322    467777753         2 89999999884    12221


Q ss_pred             e--cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-EeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470          305 L--TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       305 ~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  381 (510)
                      +  ....++|++++...  +. ++++. ++.|.+|++.... ....-..+.++...+....++++++|+....+.++...
T Consensus        82 i~~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred             EEEEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence            1  23578899988763  44 44444 5899999998777 55555554544444444457799999988888877443


Q ss_pred             C-Cceeeee-cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          382 T-GKLLSEV-AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       382 ~-~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      . +..+..+ .......++++.|-++++.++++..+|.+.++...
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            3 3323222 22223678899998777899999999999998875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.54  E-value=0.0001  Score=67.03  Aligned_cols=217  Identities=12%  Similarity=0.130  Sum_probs=131.5

Q ss_pred             EEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec
Q 010470          273 LAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH  351 (510)
Q Consensus       273 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  351 (510)
                      ..|.++...|+.+. ..+.|.-|+..+++.. .+. +.+.+.++.... .+..|+++.  ..+.+++..++..+..+...
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccc
Confidence            45667777555444 6778999998766432 222 223334444433 445555554  35667776655553333211


Q ss_pred             ------CceeEEEEcCCCCEEEEecC-----------CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec
Q 010470          352 ------SNCNALAFSMDGQTIFSGHI-----------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR  414 (510)
Q Consensus       352 ------~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  414 (510)
                            ...+.+.+.|+|.+.+....           -|.|+.+|. .+.....+..+- ...+.|+||||++.|+.+..
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~-~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL-TIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE-EecCceEECCCCCEEEEEeC
Confidence                  34788999999997775433           244666665 455555554433 67789999999987776655


Q ss_pred             -CCcEEEEEcCC--ceeee---EeecCCCeeecCceeEEEcCCCCEEEEEcCCC-eEEEEeCCCcceeecccccCcCEEE
Q 010470          415 -DNLHNLFDIRS--LEVCG---SLRATGNRVASNWSRSCISPDESYVAAGSADG-SVYIWSISKADIVRTLKEHTAPVLS  487 (510)
Q Consensus       415 -d~~i~i~d~~~--~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~  487 (510)
                       .+.|.-|++..  +....   .+....  .....-.+++..+|.+.+++..+| .|.+|+.. |+++..+..+...+++
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~--~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~  259 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDE--EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN  259 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccC--CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence             47888887752  11111   111110  111122377888999886655554 89999987 9998888877677888


Q ss_pred             EEEeC-CCCcEEE
Q 010470          488 CSWSG-LGKPLAS  499 (510)
Q Consensus       488 ~~~~~-~~~~l~s  499 (510)
                      ++|-- +.+.|+.
T Consensus       260 ~~FgG~~~~~L~i  272 (307)
T COG3386         260 PAFGGPDLNTLYI  272 (307)
T ss_pred             ceEeCCCcCEEEE
Confidence            99863 4444433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.53  E-value=3.7e-05  Score=72.57  Aligned_cols=263  Identities=14%  Similarity=0.131  Sum_probs=138.9

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC---C----
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS---G----  299 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~----  299 (510)
                      .|+.+.|+++..-|++|...|.|.||.+...+...  .....+-..+.+.+-      ...++.-.+-|+..   .    
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence            58999999999999999999999999876443221  000001111111110      00111122223321   1    


Q ss_pred             --CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC---------ceeEEEEcC-----CC
Q 010470          300 --RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS---------NCNALAFSM-----DG  363 (510)
Q Consensus       300 --~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~i~~i~~~~-----~~  363 (510)
                        .+...+....++|++++.+  +-.+++.|..+|.+.|.|++....+..-....         .++++.|..     |+
T Consensus        75 gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             ccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence              1344455568999999996  47899999999999999999888776643222         367777752     33


Q ss_pred             ---CEEEEecCCCcEEEEECCC---Cceeeeec---ccccccEEEEE-EcCC-C-------------------CEEEEEe
Q 010470          364 ---QTIFSGHIDGNLRLWDIQT---GKLLSEVA---AHSLAAVTSIS-LSRS-G-------------------NIILTSG  413 (510)
Q Consensus       364 ---~~l~~~~~dg~i~i~d~~~---~~~~~~~~---~~~~~~i~~i~-~~~~-~-------------------~~l~~~~  413 (510)
                         -.+++|+..|.+.+|.+--   +.....+.   ....+++..|. ++.+ |                   +-+++..
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence               4688999999999998741   21111111   11124555444 3211 0                   1244445


Q ss_pred             cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE-----cCCCCEEEEEcCCCeEEEEeCCCcceeecccccC----cC
Q 010470          414 RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-----SPDESYVAAGSADGSVYIWSISKADIVRTLKEHT----AP  484 (510)
Q Consensus       414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~  484 (510)
                      .+..++++.+.+.+..+...  .....+.  .+++     ...+..|++-..+|.|++|.+..-+.+..++.+.    ..
T Consensus       233 Se~~irv~~~~~~k~~~K~~--~~~~~~~--~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~  308 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHKSF--DDPFLCS--SASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRR  308 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE---SS-EEEE--EEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHH
T ss_pred             cccceEEEeCCCCcccceee--ccccccc--eEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccc
Confidence            57789999998877665554  2212211  1233     2356778888999999999999988776665422    23


Q ss_pred             EEEEEEeCCCCcEEEeeCC
Q 010470          485 VLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       485 v~~~~~~~~~~~l~s~~~d  503 (510)
                      +...+++++|..++-.|..
T Consensus       309 ~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  309 LSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             HTT-EE-TTS-EEEE-SSS
T ss_pred             ccccEECCCCCEEEEeCcc
Confidence            4456778888876655443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=1.9e-06  Score=84.09  Aligned_cols=109  Identities=13%  Similarity=0.190  Sum_probs=85.7

Q ss_pred             EEEEEecCCCCEEEEEe----CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 010470          313 CAVDVSKISSRHVVSAA----YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE  388 (510)
Q Consensus       313 ~~i~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  388 (510)
                      +-..|+| ...++++++    ..|+|.||- .+|.+...+..+-.++++||+|..-.|+.|-.-|.+.+|...+.+.-..
T Consensus        19 ti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            3456777 556666554    358888884 4677666666666688999999999999999999999999766554444


Q ss_pred             ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          389 VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       389 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      ...|. .+|..+.|||+|..++++..-|.+.+|...
T Consensus        97 ~~th~-a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHP-APIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCC-CCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            44444 899999999999999999999999999765

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.53  E-value=1.9e-05  Score=75.27  Aligned_cols=204  Identities=18%  Similarity=0.172  Sum_probs=123.9

Q ss_pred             EEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe---CC-CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470          249 IKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS---SS-NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH  324 (510)
Q Consensus       249 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  324 (510)
                      +.+-|.+ +.....+......+..-.|+|++..++..+   .. ..++++++.+++...... ..+.-....|+|++..+
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l  252 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence            4444444 444445555556777789999998766553   22 469999999887554444 23334456799955556


Q ss_pred             EEEEeCCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec-CCC--cEEEEECCCCceeeeecccccccEEE
Q 010470          325 VVSAAYDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDG--NLRLWDIQTGKLLSEVAAHSLAAVTS  399 (510)
Q Consensus       325 l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~  399 (510)
                      +++...||.  |.++|+.++...+.....+.-..-.|+|||+.++..+ ..|  .|.++|...+.. ..+.... ..-..
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~-~~~~~  330 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG-GGNSN  330 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC-CCCcC
Confidence            666666765  5666877666444222223334678899999888654 344  477777755544 3443332 22337


Q ss_pred             EEEcCCCCEEEEEecC-Cc--EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470          400 ISLSRSGNIILTSGRD-NL--HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD  461 (510)
Q Consensus       400 i~~~~~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  461 (510)
                      -.|+|+|++|+..+.. |.  |.++|+.++.....+........     ..+.++|..++..+..
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~-----ps~~~ng~~i~~~s~~  390 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNES-----PSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCC-----CCcCCCCceEEEeccC
Confidence            8899999999887743 43  66667665553333332222111     4578888887765543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.51  E-value=9.6e-05  Score=70.82  Aligned_cols=218  Identities=14%  Similarity=0.172  Sum_probs=111.4

Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      ....+..+.++|+|+++++ +.+|.-.||.....+...     .+.-..+.|.+  .+.+++-...+.|.++.--+....
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSS--RNRYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-T--SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEec--CccEEEEECCCeEEEEEcCccccc
Confidence            3445788999999998888 566778888743333222     13344577876  445666666889999743333333


Q ss_pred             eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      ..+..+..+..+-.   |..|...+.+ .|.+||..+++.+..+...   +|..+.|+++|.+++..+.+ .+.|++...
T Consensus       103 k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  103 KSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             eEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            34444444444433   7777766544 8999999999999998864   48999999999999998765 566665432


Q ss_pred             ce-----------eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCC
Q 010470          426 LE-----------VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG  494 (510)
Q Consensus       426 ~~-----------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  494 (510)
                      ..           ....+......    +.+.+|..+  .++..+.+ .++.+  .+|+. .++..-..++.=+.+.|..
T Consensus       175 ~~~~~~~~~g~e~~f~~~~E~~~~----IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~~  244 (443)
T PF04053_consen  175 EAVAAIPEEGVEDAFELIHEISER----IKSGCWVED--CFIYTTSN-HLKYL--VNGET-GIIAHLDKPLYLLGYLPKE  244 (443)
T ss_dssp             HHHHHBTTTB-GGGEEEEEEE-S------SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EEEEE-SS--EEEEEETTT
T ss_pred             hhcccccccCchhceEEEEEecce----eEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ceEEEcCCceEEEEEEccC
Confidence            20           11111110111    222445444  33333323 45442  22221 1222223466777788877


Q ss_pred             CcEEEeeCCCeEEEc
Q 010470          495 KPLASADKNGVVCVW  509 (510)
Q Consensus       495 ~~l~s~~~dg~i~iw  509 (510)
                      +.++..+.|+.|..+
T Consensus       245 ~~ly~~Dr~~~v~~~  259 (443)
T PF04053_consen  245 NRLYLIDRDGNVISY  259 (443)
T ss_dssp             TEEEEE-TT--EEEE
T ss_pred             CEEEEEECCCCEEEE
Confidence            788888888887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.45  E-value=0.00036  Score=69.22  Aligned_cols=238  Identities=11%  Similarity=0.106  Sum_probs=144.4

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceeccccc--c--cceeEEEEecCCCEEEEEeC------CCeEEEEEcCCCCeeEeec
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGC--L--GSVLDLAITHDNRSVIAASS------SNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~--~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~  306 (510)
                      +..++.++.|+.+.-.|..+|+.+......  .  ..+++--.-.++ .+++++.      +|.|..+|..+|+.+..+.
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            356778888999999999999987655421  1  111111111134 4555442      6899999999999877654


Q ss_pred             CCCC-------------------------------ceE-EEEEecCCCCEEEEEeC-----CC-----------cEEEEE
Q 010470          307 GHTD-------------------------------KVC-AVDVSKISSRHVVSAAY-----DR-----------TLKVWD  338 (510)
Q Consensus       307 ~~~~-------------------------------~v~-~i~~~~~~~~~l~s~~~-----dg-----------~i~iwd  338 (510)
                      .-..                               .++ .+++.| ..++++.+..     ++           +|.-.|
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld  277 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD  277 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence            2111                               111 234544 3445554441     12           678889


Q ss_pred             CCCCeEeeeeeec-C---------ceeEEEEcCCCC---EEEEecCCCcEEEEECCCCceeee--------e----cccc
Q 010470          339 LHKGYCVNTIIFH-S---------NCNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLLSE--------V----AAHS  393 (510)
Q Consensus       339 ~~~~~~~~~~~~~-~---------~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~--------~----~~~~  393 (510)
                      +++|+....+... .         ...-+.+..+|+   .++.+..+|.++++|-++|+++..        +    ....
T Consensus       278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~  357 (527)
T TIGR03075       278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT  357 (527)
T ss_pred             cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence            9999988777542 1         122333334676   777899999999999999987621        1    0000


Q ss_pred             ccc----------------------------EEEEEEcCCCCEEEEEecC------------------------------
Q 010470          394 LAA----------------------------VTSISLSRSGNIILTSGRD------------------------------  415 (510)
Q Consensus       394 ~~~----------------------------i~~i~~~~~~~~l~~~~~d------------------------------  415 (510)
                      ..+                            -..++++|+..++++...+                              
T Consensus       358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~  437 (527)
T TIGR03075       358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD  437 (527)
T ss_pred             CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence            000                            0125666766665544333                              


Q ss_pred             ---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc
Q 010470          416 ---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH  481 (510)
Q Consensus       416 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  481 (510)
                         |.+.-+|+.+++..-...........    . +.-.|.+++.++.+|.++.+|..+|+.+..++..
T Consensus       438 ~~~g~l~AiD~~tGk~~W~~~~~~p~~~~----~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       438 DHMGSLIAWDPITGKIVWEHKEDFPLWGG----V-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             CCceeEEEEeCCCCceeeEecCCCCCCCc----c-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence               34666777777776655433222111    1 2225567778888999999999999999887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.43  E-value=2e-05  Score=74.64  Aligned_cols=113  Identities=15%  Similarity=0.240  Sum_probs=80.2

Q ss_pred             eeEEEEecC-CCEEEEE----eCCCe----EEEEEcCCCCeeEe---ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470          270 VLDLAITHD-NRSVIAA----SSSNN----LYVWDVNSGRVRHT---LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW  337 (510)
Q Consensus       270 v~~~~~~~~-~~~l~~~----~~d~~----i~iwd~~~~~~~~~---~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw  337 (510)
                      ..++.|+.. +..+.+.    +.+|.    -.+|++..++....   --.....|.+.+++| +...++.|+.||+|.+|
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILY  286 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEE
Confidence            356667653 3344443    23342    35677665543221   123678899999999 88899999999999999


Q ss_pred             ECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 010470          338 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK  384 (510)
Q Consensus       338 d~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  384 (510)
                      |...+..... ...-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       287 D~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  287 DTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            9977643322 334458899999999999999999999999986443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.43  E-value=7e-08  Score=90.93  Aligned_cols=199  Identities=16%  Similarity=0.246  Sum_probs=131.5

Q ss_pred             cceeEEEEecCC--CEEEEEeCCCeEEEEEcCCCCe--eEeecCCCCceEEEEEecCCCCEEEEEe----CCCcEEEEEC
Q 010470          268 GSVLDLAITHDN--RSVIAASSSNNLYVWDVNSGRV--RHTLTGHTDKVCAVDVSKISSRHVVSAA----YDRTLKVWDL  339 (510)
Q Consensus       268 ~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~s~~----~dg~i~iwd~  339 (510)
                      ..+.|+++.-+.  ..+++|..+|.|.+-.+....-  -....+|..+.++++|++.+.+.|+.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            345556554333  4677888899999988765432  2344678889999999998888888774    3678999999


Q ss_pred             CCC--eEeeeeee----cCceeEEEEcCCCCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcC-CCCEEEE
Q 010470          340 HKG--YCVNTIIF----HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSR-SGNIILT  411 (510)
Q Consensus       340 ~~~--~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~  411 (510)
                      .++  .+......    ....+++||..+.+.+.+|.....+.++|++.. .....+..   ..+..+.++| .++|+++
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT---k~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT---KYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh---hhcccceecCCCCCceec
Confidence            877  22222221    234678999988999999999999999999833 22222222   3567788888 6777776


Q ss_pred             EecCCcEEEEE-cCCce-eeeEeecCCCeeecCceeEEEcCC--CCEEEEEcCCCeEEEEeCC
Q 010470          412 SGRDNLHNLFD-IRSLE-VCGSLRATGNRVASNWSRSCISPD--ESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       412 ~~~d~~i~i~d-~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~i~iwd~~  470 (510)
                      .. ||.|.+|| .++.+ ++..+....+........++|+|.  |...+..-..++|+.|++.
T Consensus       214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            65 99999999 44432 222222333332233455888884  3333334445789999875

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.40  E-value=0.0006  Score=66.32  Aligned_cols=241  Identities=11%  Similarity=0.125  Sum_probs=127.1

Q ss_pred             ceEEEEEecCCCEEEEe-eCCC----eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC-----------e
Q 010470          227 GCASILFEYNSARLISG-GQDK----SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN-----------N  290 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~  290 (510)
                      .+....+||+|+++|.+ +..|    .|+++|+.+|+.+....... ....+.|.++++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999998755 3333    59999999997754321111 122399999998887765332           4


Q ss_pred             EEEEEcCCCCe--eEeecCCCCc--eEEEEEecCCCCEEEE-EeC--C-CcEEEEECCCC----eEeeeeee-cCceeEE
Q 010470          291 LYVWDVNSGRV--RHTLTGHTDK--VCAVDVSKISSRHVVS-AAY--D-RTLKVWDLHKG----YCVNTIIF-HSNCNAL  357 (510)
Q Consensus       291 i~iwd~~~~~~--~~~~~~~~~~--v~~i~~~~~~~~~l~s-~~~--d-g~i~iwd~~~~----~~~~~~~~-~~~i~~i  357 (510)
                      |+.|.+.++..  ...+......  ...+..++ ++++++. ...  + ..+.+.|+..+    .....+.. ...+...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            78888876643  2344433333  56777887 6666554 332  2 45888888764    22233332 2333332


Q ss_pred             EEcCCCCEEEEe---cCCCcEEEEECCCCce---eeeeccccc-ccEEEEEEcCCCCEEEEEe-cCC--cEEEEEcCCce
Q 010470          358 AFSMDGQTIFSG---HIDGNLRLWDIQTGKL---LSEVAAHSL-AAVTSISLSRSGNIILTSG-RDN--LHNLFDIRSLE  427 (510)
Q Consensus       358 ~~~~~~~~l~~~---~~dg~i~i~d~~~~~~---~~~~~~~~~-~~i~~i~~~~~~~~l~~~~-~d~--~i~i~d~~~~~  427 (510)
                      .-+..+.+++..   ..++.|...++.....   ...+..+.. ..+..+..  .+++|+... .++  .|.++++..+.
T Consensus       283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence            222244444433   2346787788877653   223333321 23444444  455555544 343  68889998333


Q ss_pred             eeeEeecCCCeeecCceeEEEcCCCCEEEE--EcC--CCeEEEEeCCCcce
Q 010470          428 VCGSLRATGNRVASNWSRSCISPDESYVAA--GSA--DGSVYIWSISKADI  474 (510)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~--dg~i~iwd~~~~~~  474 (510)
                      ....+.......   +..+...++++.+..  .|.  -++++.||+.+++.
T Consensus       361 ~~~~~~~p~~g~---v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  361 ESREIPLPEAGS---VSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEESSSSSE---EEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEeeecCCcceE---EeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            333333332221   112333455544332  222  36788888888765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.40  E-value=1e-07  Score=89.91  Aligned_cols=197  Identities=15%  Similarity=0.214  Sum_probs=128.3

Q ss_pred             cceEEEEEecCC--CEEEEeeCCCeEEEEeCCCCcc--eecccccccceeEEEEecCCC-EEEEEe----CCCeEEEEEc
Q 010470          226 GGCASILFEYNS--ARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLAITHDNR-SVIAAS----SSNNLYVWDV  296 (510)
Q Consensus       226 ~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~----~d~~i~iwd~  296 (510)
                      ..+.|++++.+.  ..++.|..+|.|.+-.+.....  .....++..++++++|++-.. .|++|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            357777776544  4688999999999987754322  234567888999999988544 444442    3568999999


Q ss_pred             CCC--CeeE--eecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcC-CCCEEEEec
Q 010470          297 NSG--RVRH--TLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM-DGQTIFSGH  370 (510)
Q Consensus       297 ~~~--~~~~--~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~  370 (510)
                      .++  .+..  .+.+ ......+++|.. +...+++|.....+.++|++.............+..+.+.| .++++++-.
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             ccccCCCccccccccccccCcccccccc-CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence            876  2222  1222 334455788875 78889999999999999998332211111222467788888 777776655


Q ss_pred             CCCcEEEEE-CCCCc-eeeeecccc---cccEEEEEEcCCCC-EEEEEe-cCCcEEEEEcC
Q 010470          371 IDGNLRLWD-IQTGK-LLSEVAAHS---LAAVTSISLSRSGN-IILTSG-RDNLHNLFDIR  424 (510)
Q Consensus       371 ~dg~i~i~d-~~~~~-~~~~~~~~~---~~~i~~i~~~~~~~-~l~~~~-~d~~i~i~d~~  424 (510)
                       ||.|.+|| .++-+ ++..+....   ...+..++|.|... .+++.. ..++|++||+.
T Consensus       216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence             89999999 44332 222222111   13588999999533 344444 44789999986

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.34  E-value=0.00021  Score=67.53  Aligned_cols=219  Identities=19%  Similarity=0.239  Sum_probs=123.4

Q ss_pred             ecCCCEEEEEe---------CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          276 THDNRSVIAAS---------SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       276 ~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      |||+++++...         ..+.+.+||+.+++....... ...+....|+| +++.++... ++.|.+++..++...+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE
Confidence            57888777743         246799999998765444333 67788899999 788877776 6889999988775443


Q ss_pred             eeeec------------------CceeEEEEcCCCCEEEEecCC-C----------------------------------
Q 010470          347 TIIFH------------------SNCNALAFSMDGQTIFSGHID-G----------------------------------  373 (510)
Q Consensus       347 ~~~~~------------------~~i~~i~~~~~~~~l~~~~~d-g----------------------------------  373 (510)
                      .....                  ..-..+-|+|||++|+....| .                                  
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~  157 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR  157 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence            32211                  123678899999987753321 1                                  


Q ss_pred             -cEEEEECCCCceee-eec---ccccccEEEEEEcCCCCEEEEE--ecCC---cEEEEEcCCceeeeEeecCCCeeecCc
Q 010470          374 -NLRLWDIQTGKLLS-EVA---AHSLAAVTSISLSRSGNIILTS--GRDN---LHNLFDIRSLEVCGSLRATGNRVASNW  443 (510)
Q Consensus       374 -~i~i~d~~~~~~~~-~~~---~~~~~~i~~i~~~~~~~~l~~~--~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~  443 (510)
                       .+.++|+.+++... ...   .....-+..+.|.+++..|+..  .++.   .+.++|..++............-....
T Consensus       158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~  237 (353)
T PF00930_consen  158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY  237 (353)
T ss_dssp             EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred             eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence             13445555444321 111   1122567889999998844433  3332   466778776554333332222111222


Q ss_pred             eeEEEc-CCCC-EEEEEcCCCe--EEEEeCCCcceeecccccCcCEEE-EEEeCCCCcEE
Q 010470          444 SRSCIS-PDES-YVAAGSADGS--VYIWSISKADIVRTLKEHTAPVLS-CSWSGLGKPLA  498 (510)
Q Consensus       444 ~~~~~s-~~~~-~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~  498 (510)
                      ....+. +++. +|.....+|.  |++++...+.. ..+....-.|.. +.|+++++.|+
T Consensus       238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iy  296 (353)
T PF00930_consen  238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIY  296 (353)
T ss_dssp             SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEE
T ss_pred             cccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEE
Confidence            234444 5554 5555556665  55556555553 345445556755 67888877554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.31  E-value=0.00064  Score=65.22  Aligned_cols=190  Identities=14%  Similarity=0.228  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-----ceeE-----EEE
Q 010470          290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-----NCNA-----LAF  359 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~i~~-----i~~  359 (510)
                      .|.||+. .|+.+..+.-..+.+.++.|..  ...|++...||.+++||+. |..  .+....     .+..     ..+
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~  135 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF  135 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence            5888884 4777777665558999999976  4556667789999999996 433  222221     1211     122


Q ss_pred             cCCCCEEEEecCCCcEEEEECCCCc-eeeeecccc--------cccEEE-EEEcCCCCEEEEEecCCcEEEEEcCCceee
Q 010470          360 SMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHS--------LAAVTS-ISLSRSGNIILTSGRDNLHNLFDIRSLEVC  429 (510)
Q Consensus       360 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~--------~~~i~~-i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  429 (510)
                      ..+|  ++.-+.++.+++..--... ....+....        ...... ..++.+....+....++.+.+.+-..... 
T Consensus       136 ~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-  212 (410)
T PF04841_consen  136 YKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-  212 (410)
T ss_pred             CCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence            2245  3333344555554322211 111111000        001111 23444444444444555555444322111 


Q ss_pred             eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc-CcCEEEEEEeCCCC
Q 010470          430 GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGK  495 (510)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~  495 (510)
                        +     ....++..+++||+|++||.-..+|.+.|.+.+-.+.+..+... ...+..+.|..++.
T Consensus       213 --i-----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  213 --I-----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             --c-----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence              1     11234666999999999999999999999987666665555433 34566777776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.28  E-value=7.9e-05  Score=75.31  Aligned_cols=140  Identities=19%  Similarity=0.191  Sum_probs=95.4

Q ss_pred             CCEEEEe-cCCCcEEEEECCCCceeeeecccccccEEEEEEcC-----CCCEEEEEecCCcEEEEEcCCce-eeeEeecC
Q 010470          363 GQTIFSG-HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-----SGNIILTSGRDNLHNLFDIRSLE-VCGSLRAT  435 (510)
Q Consensus       363 ~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-----~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~  435 (510)
                      .++|+.. .....|+-.|+..|+.+..+..+...+|..++-..     ++.-.++|-.++.+..||.|-.. .+..-..+
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444443 45678999999999999999988755565554331     13345677788899999998532 11111222


Q ss_pred             CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      .......+++++-+.+| +||+|+.+|.|++||-........+++-..||.+|..+.||++|++.+..
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            33333455666665555 78899999999999954333344466778999999999999988776544

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.28  E-value=0.00075  Score=61.44  Aligned_cols=217  Identities=17%  Similarity=0.164  Sum_probs=127.4

Q ss_pred             EEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec----
Q 010470          232 LFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT----  306 (510)
Q Consensus       232 ~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----  306 (510)
                      .|.++.. ++++.-..+.|.-|+..++.... + .+.+.+.++..-..+..|+++..  .+.+++..++..+..+.    
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~-~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-F-PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-E-ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            4667666 45666667889999988664321 1 22333445544445555555543  35666766555532221    


Q ss_pred             C-CCCceEEEEEecCCCCEEEEEeC-----------CCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEec-CC
Q 010470          307 G-HTDKVCAVDVSKISSRHVVSAAY-----------DRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGH-ID  372 (510)
Q Consensus       307 ~-~~~~v~~i~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~-~d  372 (510)
                      + .....+.+.+.| ++.+.++...           -|.|+.+|. .+..+..+.. -...+.++|+||++.++... ..
T Consensus       107 ~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         107 GLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence            1 123455677777 5555444332           144555555 3555554444 34578999999998777654 45


Q ss_pred             CcEEEEECCC--C----ceeeeecccccccEEEEEEcCCCCEEEEEecCC-cEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470          373 GNLRLWDIQT--G----KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-LHNLFDIRSLEVCGSLRATGNRVASNWSR  445 (510)
Q Consensus       373 g~i~i~d~~~--~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  445 (510)
                      +.|+.|++..  +    +....+.....+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+..+.....+    
T Consensus       185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~----  259 (307)
T COG3386         185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN----  259 (307)
T ss_pred             CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc----
Confidence            7888887752  1    111222222336778889999999886555554 99999998 8888887776433332    


Q ss_pred             EEE-cCCCCEEEEEc
Q 010470          446 SCI-SPDESYVAAGS  459 (510)
Q Consensus       446 ~~~-s~~~~~l~~~~  459 (510)
                      ++| .|+.+.|++.+
T Consensus       260 ~~FgG~~~~~L~iTs  274 (307)
T COG3386         260 PAFGGPDLNTLYITS  274 (307)
T ss_pred             ceEeCCCcCEEEEEe
Confidence            455 44555544443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.27  E-value=0.00043  Score=64.60  Aligned_cols=213  Identities=15%  Similarity=0.156  Sum_probs=121.6

Q ss_pred             CeEEEEEcCCCCeeEeecCC-CCceEEEEEecCC------CCEEEEEeC---------C-CcEEEEECCCC-------eE
Q 010470          289 NNLYVWDVNSGRVRHTLTGH-TDKVCAVDVSKIS------SRHVVSAAY---------D-RTLKVWDLHKG-------YC  344 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~------~~~l~s~~~---------d-g~i~iwd~~~~-------~~  344 (510)
                      +.|++.|..+.+.+..+.-. ...+.+++.....      ..+|+.|+.         . |.|.++++...       +.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35788888777766665432 2334444332211      466776653         2 89999999884       23


Q ss_pred             eeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          345 VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       345 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      +......++|++++-. +|. |+++. ++.|.+|++...+ ....-..+....+.++...  ++++++|.....+.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            3344556778888876 444 44444 3689999998877 4443333332456666554  669999998888887754


Q ss_pred             CC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-------cc-eee-cccc-cCcCEEEE---E
Q 010470          424 RS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-------AD-IVR-TLKE-HTAPVLSC---S  489 (510)
Q Consensus       424 ~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~-~~~-~~~~-~~~~v~~~---~  489 (510)
                      .. ...+..+.....  ...+.++.+-++++.++++..+|.+.++....       +. .+. ...- ....|+++   +
T Consensus       157 ~~~~~~l~~va~d~~--~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~  234 (321)
T PF03178_consen  157 DEENNKLILVARDYQ--PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS  234 (321)
T ss_dssp             ETTTE-EEEEEEESS---BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred             EccCCEEEEEEecCC--CccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence            43 222222222211  12234466665667999999999999998763       11 111 1111 24567777   5


Q ss_pred             EeCC--CC------cEEEeeCCCeEEE
Q 010470          490 WSGL--GK------PLASADKNGVVCV  508 (510)
Q Consensus       490 ~~~~--~~------~l~s~~~dg~i~i  508 (510)
                      +.|.  +.      .++.++.+|.|.+
T Consensus       235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  235 LIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             eeecCCCCcccccceEEEEecCCEEEE
Confidence            4552  22      3888889998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.25  E-value=0.0022  Score=61.56  Aligned_cols=176  Identities=15%  Similarity=0.125  Sum_probs=95.6

Q ss_pred             eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-------cCCCCceEEEEEecC
Q 010470          248 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-------TGHTDKVCAVDVSKI  320 (510)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~~~~  320 (510)
                      .|.||+.. |+.+.++.-..+.+.++.|+.+ ..|++...||.+++||+. |+....+       .-....+....+.  
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~--  136 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY--  136 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC--
Confidence            59999876 6666665544489999999875 557777899999999986 3331111       1111112222222  


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCe-Eeeeee-ecC---------ceeE-EEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 010470          321 SSRHVVSAAYDRTLKVWDLHKGY-CVNTII-FHS---------NCNA-LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE  388 (510)
Q Consensus       321 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~---------~i~~-i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  388 (510)
                      +...++. ..++.+.+.+-.... ....+. .+.         .... ..++.+....+....++.+.+.+-...+.   
T Consensus       137 ~~GivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---  212 (410)
T PF04841_consen  137 KNGIVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---  212 (410)
T ss_pred             CCCEEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence            1233333 234444444322211 111110 010         0111 22333444444444455555444322211   


Q ss_pred             ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec
Q 010470          389 VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA  434 (510)
Q Consensus       389 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  434 (510)
                      +..  .+++..+++||+|++++.-..+|.+.+.+..-.+....+..
T Consensus       213 i~~--~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  213 IDS--DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             ccC--CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence            221  26899999999999999999999998887655555444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.25  E-value=0.00081  Score=61.32  Aligned_cols=215  Identities=16%  Similarity=0.190  Sum_probs=121.9

Q ss_pred             cCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee---------
Q 010470          277 HDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN---------  346 (510)
Q Consensus       277 ~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------  346 (510)
                      ..++.|+.|+.+| +++++... .......  +...|..+.+.| .-+.+++-+ |+.+.++++..-....         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            4578899999888 99999833 2333322  233499999988 556666555 6999999987544333         


Q ss_pred             ------eeeecCceeEEE--EcCCC-CEEEEecCCCcEEEEECCCC-----ceeeeecccccccEEEEEEcCCCCEEEEE
Q 010470          347 ------TIIFHSNCNALA--FSMDG-QTIFSGHIDGNLRLWDIQTG-----KLLSEVAAHSLAAVTSISLSRSGNIILTS  412 (510)
Q Consensus       347 ------~~~~~~~i~~i~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  412 (510)
                            .+.....+..++  -.+.+ ..++++. ...|.+|.....     +....+...  ..+.++.|.  ++.++.|
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~  154 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVG  154 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEE
Confidence                  112223344444  12233 3444444 458888877543     455666655  688999998  5677777


Q ss_pred             ecCCcEEEEEcCCceeeeEeecCCCe--------eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee--cccccC
Q 010470          413 GRDNLHNLFDIRSLEVCGSLRATGNR--------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR--TLKEHT  482 (510)
Q Consensus       413 ~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~  482 (510)
                      ..+ ...+.|+.++.....+......        ...+.. +.--+++.+|++..  ..-.+.|. .|++..  .+.- .
T Consensus       155 ~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Ll~~~--~~g~fv~~-~G~~~r~~~i~W-~  228 (275)
T PF00780_consen  155 TSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG-IFQLSDNEFLLCYD--NIGVFVNK-NGEPSRKSTIQW-S  228 (275)
T ss_pred             eCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE-EEEeCCceEEEEec--ceEEEEcC-CCCcCcccEEEc-C
Confidence            655 4778899876665444322211        011111 22223456666543  32333343 444433  2222 2


Q ss_pred             cCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          483 APVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       483 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..+.++++.  .++|+..+.+ .|.||+
T Consensus       229 ~~p~~~~~~--~pyli~~~~~-~iEV~~  253 (275)
T PF00780_consen  229 SAPQSVAYS--SPYLIAFSSN-SIEVRS  253 (275)
T ss_pred             CchhEEEEE--CCEEEEECCC-EEEEEE
Confidence            345566663  3477777664 487774

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.22  E-value=2.6e-05  Score=75.04  Aligned_cols=116  Identities=20%  Similarity=0.318  Sum_probs=85.6

Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe-ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC  344 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  344 (510)
                      +...|.--+++..+++++.|+.-|.+++|+-..+..... ..+..+.+....+++ ...+++.|+..|.|.++-+..+.+
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence            344555556777899999999999999999766553322 223444555666666 778888999999999998876432


Q ss_pred             eeee---e----ecCceeEEEEcCCCCEEEEecCCCcEEEEECCC
Q 010470          345 VNTI---I----FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT  382 (510)
Q Consensus       345 ~~~~---~----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~  382 (510)
                      ....   .    +...|++++|++++..+++|...|.|..-.+.+
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            2211   1    123599999999999999999999999888766

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.17  E-value=0.00011  Score=74.23  Aligned_cols=143  Identities=22%  Similarity=0.313  Sum_probs=98.4

Q ss_pred             CCCEEEEE-eCCCeEEEEEcCCCCeeEeecCCCCc-eEEEEEec----CCCCEEEEEeCCCcEEEEECCCCe--Eee---
Q 010470          278 DNRSVIAA-SSSNNLYVWDVNSGRVRHTLTGHTDK-VCAVDVSK----ISSRHVVSAAYDRTLKVWDLHKGY--CVN---  346 (510)
Q Consensus       278 ~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~----~~~~~l~s~~~dg~i~iwd~~~~~--~~~---  346 (510)
                      +.++|+.. ...+.|+-.|++.|+.+..+..|... |..++-..    ..+...+.|-.++.+..||++-..  ++.   
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            33444443 34578999999999999999887654 55543221    123456677778999999998532  222   


Q ss_pred             -eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          347 -TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       347 -~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                       .+.......|++-+.+| +||+|+.+|.|++|| +.|+...+.-..-+.+|..|+.+.||+++++.+.. .+.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence             12223457888887666 688999999999999 45544444333333899999999999999888755 4556654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PHA02713 hypothetical protein; Provisional

Probab=98.16  E-value=0.0003  Score=70.50  Aligned_cols=224  Identities=11%  Similarity=0.066  Sum_probs=111.7

Q ss_pred             eEEEEeCCCCccee--cccccccceeEEEEecCCCEEEEEeCC------CeEEEEEcCCCCeeE--eecCCCCceEEEEE
Q 010470          248 SIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS------NNLYVWDVNSGRVRH--TLTGHTDKVCAVDV  317 (510)
Q Consensus       248 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~i~~  317 (510)
                      .+..||..+++...  .+...... .+++. -++..+++|+.+      ..+..||+.++....  .+....... +++.
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence            56778887665321  22211111 12222 366777777743      357788887664321  111111111 2222


Q ss_pred             ecCCCCEEEEEeCCC-----cEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCCC-----------------
Q 010470          318 SKISSRHVVSAAYDR-----TLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDG-----------------  373 (510)
Q Consensus       318 ~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg-----------------  373 (510)
                      .  ++.+.+.||.++     .+..||..++.....-..+.+  -.+++ ..+|...+.|+.++                 
T Consensus       350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccc
Confidence            2  577778888754     488899987754332222221  11222 22677777777542                 


Q ss_pred             ------cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC------CcEEEEEcCC-ceeeeEeecCCCeee
Q 010470          374 ------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD------NLHNLFDIRS-LEVCGSLRATGNRVA  440 (510)
Q Consensus       374 ------~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~~~  440 (510)
                            .+..||+.+.+-...-.... .....-...-+|.+.+.|+.+      ..+..||..+ .+-......+.....
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~~-~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFWT-GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCCc-ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence                  47788887654321111111 111111122346666777654      2467888876 332211111111111


Q ss_pred             cCceeEEEcCCCCEEEEEcCCC--eEEEEeCCCcceeecccccC
Q 010470          441 SNWSRSCISPDESYVAAGSADG--SVYIWSISKADIVRTLKEHT  482 (510)
Q Consensus       441 ~~~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~  482 (510)
                      .    -...-+|.+.++|+.+|  ++..||..+.+=......|.
T Consensus       506 ~----~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        506 L----HTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             c----eeEEECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence            1    12233788888999888  77788877665333333343

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.15  E-value=0.004  Score=54.38  Aligned_cols=185  Identities=11%  Similarity=0.071  Sum_probs=121.4

Q ss_pred             ceEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 010470          311 KVCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL  386 (510)
Q Consensus       311 ~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  386 (510)
                      -..++.|.. ++.++-+.+.-|  .|+.+|+.+++.......+..  --.++.. ++......-.+|...+||..+.+.+
T Consensus        46 FTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence            345677755 677777777766  799999999998887777655  3445554 3444556677899999999999998


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe-eecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470          387 SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR-VASNWSRSCISPDESYVAAGSADGSVY  465 (510)
Q Consensus       387 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~i~  465 (510)
                      ..+...  +.-..++  .+|..|+.+.....++++|..+.+....+...... ....++-+-+- +|...|=.-....|.
T Consensus       124 ~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~  198 (264)
T PF05096_consen  124 GTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV  198 (264)
T ss_dssp             EEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence            888766  3445555  56788888888889999999998887776644322 22234445443 566666566667788


Q ss_pred             EEeCCCcceeecccc------------c---CcCEEEEEEeCCCCcEEEeeC
Q 010470          466 IWSISKADIVRTLKE------------H---TAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       466 iwd~~~~~~~~~~~~------------~---~~~v~~~~~~~~~~~l~s~~~  502 (510)
                      ..|..+|..+..+..            +   ..-.++++|.|.+..|...|.
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            889999887665421            1   345799999998776555443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.11  E-value=0.0015  Score=54.77  Aligned_cols=208  Identities=13%  Similarity=0.175  Sum_probs=116.5

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCeeE-eecCCCCceEEEEEecCCC---CEEEEEeCCCcEEEEECCC--CeEeeeeee--
Q 010470          279 NRSVIAASSSNNLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISS---RHVVSAAYDRTLKVWDLHK--GYCVNTIIF--  350 (510)
Q Consensus       279 ~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~---~~l~s~~~dg~i~iwd~~~--~~~~~~~~~--  350 (510)
                      +.++.+--..|.|.-||..+++... ++.+..  +.++.+ |..+   .+.+.++..-.|.-||...  -....++..  
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~  103 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ  103 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence            3344444466777779887765433 233221  223322 2222   3444445444556677432  223333211  


Q ss_pred             ----cCceeEEEEcCCCCEEEEecC----------CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEE-EEecC
Q 010470          351 ----HSNCNALAFSMDGQTIFSGHI----------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIIL-TSGRD  415 (510)
Q Consensus       351 ----~~~i~~i~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d  415 (510)
                          ....+.-..+|+|++++ |..          .|.++.|-.  +..+..+...- .-.+.++|+.+.+.++ +-+.+
T Consensus       104 ~d~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v-~IsNgl~Wd~d~K~fY~iDsln  179 (310)
T KOG4499|consen  104 PDRKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLA--GHQVELIWNCV-GISNGLAWDSDAKKFYYIDSLN  179 (310)
T ss_pred             chHHhcccccCccCCCCceee-eeeccccccccccccEEEEecc--CCCceeeehhc-cCCccccccccCcEEEEEccCc
Confidence                23467788899999844 332          133344332  11111111111 3456788888777654 44556


Q ss_pred             CcEEEEE--cCCcee-----eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEE
Q 010470          416 NLHNLFD--IRSLEV-----CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSC  488 (510)
Q Consensus       416 ~~i~i~d--~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  488 (510)
                      -.|.-||  ..++..     +..++.....-......+++..+|++.++.-..|+|..+|..+|+.+.+++-....|+++
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc  259 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC  259 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence            6776676  444332     222222111111111236678889999998889999999999999999998888999999


Q ss_pred             EEeCC
Q 010470          489 SWSGL  493 (510)
Q Consensus       489 ~~~~~  493 (510)
                      +|...
T Consensus       260 cFgGk  264 (310)
T KOG4499|consen  260 CFGGK  264 (310)
T ss_pred             EecCC
Confidence            99643

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.09  E-value=0.00015  Score=68.62  Aligned_cols=220  Identities=12%  Similarity=0.137  Sum_probs=113.4

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec--cc------ccccceeEEEEec-----CC---C
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST--LY------GCLGSVLDLAITH-----DN---R  280 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~------~~~~~v~~~~~~~-----~~---~  280 (510)
                      +...+....++|++++.|.=| +++.|..+|.+.|.|+.....+..  +.      .....|+++.|..     |+   -
T Consensus        78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            445566679999999998554 999999999999999976655443  11      1344677888852     22   3


Q ss_pred             EEEEEeCCCeEEEEEcCC---CCeeEeec----CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--
Q 010470          281 SVIAASSSNNLYVWDVNS---GRVRHTLT----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--  351 (510)
Q Consensus       281 ~l~~~~~d~~i~iwd~~~---~~~~~~~~----~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  351 (510)
                      .+++|.+.|.+.+|.+.-   +.....+.    .+.++|.                   .|..+|..+|.........  
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~-------------------~I~~i~~~~G~~a~At~~~~~  217 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPIL-------------------SIIPINADTGESALATISAMQ  217 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-----------------------EEEEEETTT--B-B-BHHHHH
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceE-------------------EEEEEECCCCCcccCchhHhh
Confidence            678888889999987641   11111110    1111111                   2333344444322111100  


Q ss_pred             CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEc-----CCCCEEEEEecCCcEEEEEcCCc
Q 010470          352 SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS-----RSGNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       352 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~-----~~~~~l~~~~~d~~i~i~d~~~~  426 (510)
                      .--..+..  .| ++++++ +..++++...+.+...+..... .....+.+-     ..+..|++-..+|.+++|.+...
T Consensus       218 ~l~~g~~i--~g-~vVvvS-e~~irv~~~~~~k~~~K~~~~~-~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  218 GLSKGISI--PG-YVVVVS-ESDIRVFKPPKSKGAHKSFDDP-FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             GGGGT------E-EEEEE--SSEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred             ccccCCCc--Cc-EEEEEc-ccceEEEeCCCCcccceeeccc-cccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence            00001111  12 333333 5679999998887766655322 333444452     35678888899999999999999


Q ss_pred             eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470          427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD  461 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  461 (510)
                      +.+.................+++++|..++..+..
T Consensus       293 kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  293 KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             -EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred             hHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence            98888877644333334457889999988766543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00025  Score=66.29  Aligned_cols=139  Identities=17%  Similarity=0.208  Sum_probs=96.3

Q ss_pred             CCCEEE-EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCE-------EEEEecCCcEEEEEcCCc-e-eeeE
Q 010470          362 DGQTIF-SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI-------ILTSGRDNLHNLFDIRSL-E-VCGS  431 (510)
Q Consensus       362 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-------l~~~~~d~~i~i~d~~~~-~-~~~~  431 (510)
                      +.++|+ .+.....++-.|+..|+.+..+..+.  .|+-+.+.|+++.       -+.|-.++.|.-||+|-. . .+..
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccC--CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            344444 56666779999999999999999885  3777888887542       245667888999998832 1 2222


Q ss_pred             eecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          432 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       432 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      ...+.......+.|.+-.. ..+|++||.+|.|++||--.......+++-..+|..+..+.+|++|+..+..
T Consensus       422 ~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             eeccccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            3333333333444444444 4488999999999999963333344567888999999999999987766543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.06  E-value=0.00055  Score=68.40  Aligned_cols=232  Identities=14%  Similarity=0.175  Sum_probs=123.8

Q ss_pred             ecCCCEEEEeeCCC------eEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCC------CeEEEEEcCCCC
Q 010470          234 EYNSARLISGGQDK------SIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSS------NNLYVWDVNSGR  300 (510)
Q Consensus       234 s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~  300 (510)
                      +..+.+++.||.++      .+..||..++....... .....-.+++.. +|...++|+.|      .++..||..+++
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            33456777777773      58888888774322211 122223344444 56777888877      367888888776


Q ss_pred             eeEeecCCCCceEEEEEecCCCCEEEEEeCCC-----cEEEEECCCCeEeeeeeecCceeEEE-EcCCCCEEEEecCCC-
Q 010470          301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR-----TLKVWDLHKGYCVNTIIFHSNCNALA-FSMDGQTIFSGHIDG-  373 (510)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~i~~i~-~~~~~~~l~~~~~dg-  373 (510)
                      -.. +.....+-..+.....++.+.++||.||     +|-.||..+.+.-..-.......... ..-+|...++|+.+| 
T Consensus       361 W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  361 WTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             eec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence            333 2222222222222223688889999886     47778887665332222221211111 122688888887554 


Q ss_pred             -----cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC-----cEEEEEcCCceeeeEeecCCCeeecCc
Q 010470          374 -----NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-----LHNLFDIRSLEVCGSLRATGNRVASNW  443 (510)
Q Consensus       374 -----~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~  443 (510)
                           .+..||..++.-...-.......-..++ .-++.+.++|+.|+     .|..||..+.+....-.........  
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~--  516 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV--  516 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc--
Confidence                 4778898776533222211111111122 22567778888776     3777888765543331111111111  


Q ss_pred             eeEEEcCCCCEEEEEcCCC-----eEEEEeCCCc
Q 010470          444 SRSCISPDESYVAAGSADG-----SVYIWSISKA  472 (510)
Q Consensus       444 ~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~  472 (510)
                        -+..-++...++|+.||     +|..||..++
T Consensus       517 --g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  517 --GVVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             --cEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence              11233677777888776     4666765543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.05  E-value=0.00063  Score=50.33  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=73.3

Q ss_pred             eEEEEEecC---CCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 010470          312 VCAVDVSKI---SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE  388 (510)
Q Consensus       312 v~~i~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  388 (510)
                      |+++++...   +.+.|++|+.|..|++|+-  ...+..+.....+.+++-... ..|+.+..+|+|-+|+-  ...+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeee
Confidence            556666543   3478999999999999984  577888888888999988765 66888999999999984  444555


Q ss_pred             ecccccccEEEEEEcC-CC---CEEEEEecCCcEE
Q 010470          389 VAAHSLAAVTSISLSR-SG---NIILTSGRDNLHN  419 (510)
Q Consensus       389 ~~~~~~~~i~~i~~~~-~~---~~l~~~~~d~~i~  419 (510)
                      ++..  ..+.++.+.. ++   .-|++|-.+|.|-
T Consensus        77 iKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5544  3456655443 32   2688888888764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.04  E-value=0.011  Score=60.14  Aligned_cols=274  Identities=14%  Similarity=0.115  Sum_probs=159.7

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeC--CCCcceec--ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSST--LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR  302 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  302 (510)
                      .|.-..|-.|+.+|.++..||.+.-|.+  .+|.....  ..-...++.--.|+..++.-+.+.+|.-..+|.- +++..
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv  663 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLV  663 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEE
Confidence            3555556667889999999999877655  44443211  1223456666677777776666777777777763 34433


Q ss_pred             EeecCCCCceEE-EEEecC-CCCEEEEEeCCCcEEEEECCC--CeEeeeeeecCceeEEEEcCCCCEEEEecCC------
Q 010470          303 HTLTGHTDKVCA-VDVSKI-SSRHVVSAAYDRTLKVWDLHK--GYCVNTIIFHSNCNALAFSMDGQTIFSGHID------  372 (510)
Q Consensus       303 ~~~~~~~~~v~~-i~~~~~-~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------  372 (510)
                      .+--... .+.. ..|+.. .+..++++. .+.+.+.-+..  .-.++++..+..+..+++.+....+.+.+..      
T Consensus       664 ~spls~k-ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~  741 (1096)
T KOG1897|consen  664 YSPLSLK-EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAE  741 (1096)
T ss_pred             EeccchH-HhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchh
Confidence            2211111 1111 112211 233455544 55677765543  2334556666778888888755555443321      


Q ss_pred             --------CcEEEEECCCCceeeeecccccc---cEEEEEEcCC-CCEEEEEe----------cCCcEEEEEcCCceeee
Q 010470          373 --------GNLRLWDIQTGKLLSEVAAHSLA---AVTSISLSRS-GNIILTSG----------RDNLHNLFDIRSLEVCG  430 (510)
Q Consensus       373 --------g~i~i~d~~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~l~~~~----------~d~~i~i~d~~~~~~~~  430 (510)
                              ..++++|-.+.+.+.........   .+.+..|..| +.++++|.          ..|.|.+|.......+.
T Consensus       742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~  821 (1096)
T KOG1897|consen  742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE  821 (1096)
T ss_pred             hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee
Confidence                    13677777766655544433222   3455558777 66777775          34777787766522222


Q ss_pred             EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      ...  ...+...+..+ .-.+|+++|.-  +..|++|+..+.+.+..-..|..++..+...-.|..++.|+.=++|.+
T Consensus       822 ~v~--e~~v~Gav~aL-~~fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  822 LVA--ETVVKGAVYAL-VEFNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             eee--eeeeccceeeh-hhhCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence            211  11111111111 12467777654  457999999988777777778889999999888999999887666643

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.04  E-value=0.0081  Score=55.49  Aligned_cols=244  Identities=15%  Similarity=0.109  Sum_probs=116.0

Q ss_pred             eCCCCcceecccccc-----cceeEEEEecCCCEEEEEeC-C--CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470          253 DTNTGSLSSTLYGCL-----GSVLDLAITHDNRSVIAASS-S--NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH  324 (510)
Q Consensus       253 d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  324 (510)
                      |..+|..+..+....     ...+.=+|.++|+.|+.++. +  ..+++.|+.+++..+.-.+......+..++| +++.
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~   94 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRA   94 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCe
Confidence            455665555554322     23344577889987777664 4  4678888888876655443323333455667 5566


Q ss_pred             EEEEeCCCcEEEEECCCCeEeeeeeecCcee-EEEE--cCCCCEEEEec---C-------------------CCcEEEEE
Q 010470          325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN-ALAF--SMDGQTIFSGH---I-------------------DGNLRLWD  379 (510)
Q Consensus       325 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~-~i~~--~~~~~~l~~~~---~-------------------dg~i~i~d  379 (510)
                      ++-......|.-.|+.+.+....+..+.... ...|  +.++..++-.-   .                   ...|...|
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id  174 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID  174 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred             EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence            6555556789999999987666666555422 2444  34565544211   1                   12466667


Q ss_pred             CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC-----cEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-----LHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      +.+|+....+...  ..+.-+.|+|....+++-|..|     .-+||-+++ +.....+..+..  ...+..=-|.|||.
T Consensus       175 l~tG~~~~v~~~~--~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~--~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  175 LKTGERKVVFEDT--DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME--GESVGHEFWVPDGS  250 (386)
T ss_dssp             TTT--EEEEEEES--S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T--TEEEEEEEE-TTSS
T ss_pred             CCCCceeEEEecC--ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC--CcccccccccCCCC
Confidence            8887765555544  6788899999777666655443     125565442 222222222211  11223345899999


Q ss_pred             EEEEEc-----CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          454 YVAAGS-----ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       454 ~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      .|..-+     .+..|.-+|+.+++......  ......+--++||++++--|.|
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence            876532     24467778888876533222  2244566677888877665544

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=0.0082  Score=52.33  Aligned_cols=268  Identities=13%  Similarity=0.084  Sum_probs=149.1

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc--ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---e
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY--GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---V  301 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~  301 (510)
                      -+..+.++  +++...+..+.-++|.|+.+......+.  ...+.-.  .|.-.|++..++..|.-+.++|+.+..   .
T Consensus        88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay--gv~vsGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY--GVYVSGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE--EEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence            34555565  4577777777789999997654433221  1112233  344468889888866677788887643   3


Q ss_pred             eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC---eEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          302 RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                      ...+......-+.+++   .+++.+.+..|+-+.+.|+...   ..+........+.++..+++..+++....  -+.+-
T Consensus       164 agrya~~~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvliv  238 (370)
T COG5276         164 AGRYALPGGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIV  238 (370)
T ss_pred             eeeeccCCCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEE
Confidence            3333333444455665   4677777888999999998654   33333344446778888776666655543  47777


Q ss_pred             ECCCCceeeeecccccccEEEE-EEcCCCCEEEEEecCCcEEEEEcCCceee---eEeecCCCeeecCceeEEEcCCCCE
Q 010470          379 DIQTGKLLSEVAAHSLAAVTSI-SLSRSGNIILTSGRDNLHNLFDIRSLEVC---GSLRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       379 d~~~~~~~~~~~~~~~~~i~~i-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      |....+.+..+.......+.++ .+.-.+++......+.-+.+.|+.+....   ..+...+...      -.+...|.+
T Consensus       239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a------~gi~ay~~y  312 (370)
T COG5276         239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQA------AGIRAYGNY  312 (370)
T ss_pred             ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccc------cceEEecCe
Confidence            8777665555543332333333 33335666666666666666666542211   1111111000      112223444


Q ss_pred             EEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          455 VAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +.....+ ...+-+....+......+...-+.+++.+-+.+.+.+...+|-+.+|+
T Consensus       313 ~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~  367 (370)
T COG5276         313 NYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE  367 (370)
T ss_pred             eEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence            4444444 344445443333322222222344445555566788888899888885

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.01  E-value=0.008  Score=52.52  Aligned_cols=186  Identities=13%  Similarity=0.097  Sum_probs=119.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCC--eEEEEEcCCCCeeEeecCCC-CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          269 SVLDLAITHDNRSVIAASSSN--NLYVWDVNSGRVRHTLTGHT-DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      -...+.|..+|.++-+.+.-|  .|+.+|+.+++......-.. ----+++..  ++.+....-.++...+||..+-+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence            345688877888777777655  89999999999776554222 122334443  3455555666899999999999999


Q ss_pred             eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc----cccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS----LAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      .++.....-..++  .+|..|+.+.....++++|..+.+....+....    ...++-+.|- +|.+.+=.-....|...
T Consensus       124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            9998887777787  467777777667799999998887776665432    1245556664 56666666677788999


Q ss_pred             EcCCceeeeEeecCC-----------CeeecCceeEEEcCCCCEEEEEc
Q 010470          422 DIRSLEVCGSLRATG-----------NRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       422 d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      |..+|++...+....           .+.....+.+++.|.++.|...+
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            999999887764211           01122356699988766554444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.99  E-value=0.0038  Score=64.22  Aligned_cols=200  Identities=13%  Similarity=0.156  Sum_probs=126.2

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCc--------eEEEEEec---------------CCCCEEEEEeCCCcEE
Q 010470          279 NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK--------VCAVDVSK---------------ISSRHVVSAAYDRTLK  335 (510)
Q Consensus       279 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~i~~~~---------------~~~~~l~s~~~dg~i~  335 (510)
                      +..++.++.++.|.-.|..+|+.+..+......        ...+.+..               .....++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567888888899999999999988887543211        12233321               1345788888899999


Q ss_pred             EEECCCCeEeeeeeecCcee-------------EEEEcC--CCCEEEEecC----------CCcEEEEECCCCceeeeec
Q 010470          336 VWDLHKGYCVNTIIFHSNCN-------------ALAFSM--DGQTIFSGHI----------DGNLRLWDIQTGKLLSEVA  390 (510)
Q Consensus       336 iwd~~~~~~~~~~~~~~~i~-------------~i~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~  390 (510)
                      -.|..+|+....+.....+.             .+.-.|  .+..+++|+.          +|.|+-||.++|+.+..+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            99999999887765433221             111122  2445666642          6889999999999988775


Q ss_pred             ccc----------------cccE-EEEEEcCCCCEEEEEe------------------cCCcEEEEEcCCceeeeEeecC
Q 010470          391 AHS----------------LAAV-TSISLSRSGNIILTSG------------------RDNLHNLFDIRSLEVCGSLRAT  435 (510)
Q Consensus       391 ~~~----------------~~~i-~~i~~~~~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~~~  435 (510)
                      ...                ...+ ..+++++....++.+.                  ..+.|.-.|+.+++..-.+...
T Consensus       354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~  433 (764)
T TIGR03074       354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV  433 (764)
T ss_pred             cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence            321                0011 2345555555544422                  1245666788888887777652


Q ss_pred             CCee-----ecCceeEEEcC-CCC---EEEEEcCCCeEEEEeCCCcceeecc
Q 010470          436 GNRV-----ASNWSRSCISP-DES---YVAAGSADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       436 ~~~~-----~~~~~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~  478 (510)
                      .+..     .....-+.+.. +|+   .++.++.+|.++++|-.+|+++...
T Consensus       434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            2211     11111122333 563   7999999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02713 hypothetical protein; Provisional

Probab=97.98  E-value=0.0012  Score=66.17  Aligned_cols=202  Identities=10%  Similarity=0.103  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCeeE--eecCCCCceEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEeeeeeecCc--eeEEEE
Q 010470          290 NLYVWDVNSGRVRH--TLTGHTDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCVNTIIFHSN--CNALAF  359 (510)
Q Consensus       290 ~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--i~~i~~  359 (510)
                      .+..||..+++...  .+..... -.+++..  ++.+++.||.+      ..+..||+.++.....-..+.+  -.+++ 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHII-NYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCcccc-ceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-
Confidence            46677776654322  1211111 1222322  56777777753      3477899887754322211111  11222 


Q ss_pred             cCCCCEEEEecCCC-----cEEEEECCCCceee--eecccccccEEEEEEcCCCCEEEEEecCC----------------
Q 010470          360 SMDGQTIFSGHIDG-----NLRLWDIQTGKLLS--EVAAHSLAAVTSISLSRSGNIILTSGRDN----------------  416 (510)
Q Consensus       360 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----------------  416 (510)
                      ..+|...+.|+.+|     .+..||..+..-..  .+.... .....+.  -+|.+.+.|+.++                
T Consensus       349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-SSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-ccccEEE--ECCEEEEEeCCCccccccccccccccccc
Confidence            23677778887654     48889987654221  111111 1111222  2577777776542                


Q ss_pred             -------cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC------CeEEEEeCCC---cceeecccc
Q 010470          417 -------LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD------GSVYIWSISK---ADIVRTLKE  480 (510)
Q Consensus       417 -------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d------g~i~iwd~~~---~~~~~~~~~  480 (510)
                             .+..||..+.+-...-.........    ....-+|+..+.|+.+      ..+..||..+   ...+..++.
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~----~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~  501 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP----GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES  501 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCcccccC----cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc
Confidence                   4677887765432211111111111    1223457777777654      2467899876   334444543


Q ss_pred             cCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          481 HTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       481 ~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                      .......+++  +|+..++||.||
T Consensus       502 ~r~~~~~~~~--~~~iyv~Gg~~~  523 (557)
T PHA02713        502 RLSALHTILH--DNTIMMLHCYES  523 (557)
T ss_pred             ccccceeEEE--CCEEEEEeeecc
Confidence            3333333344  677888898887

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.95  E-value=0.0012  Score=48.98  Aligned_cols=100  Identities=20%  Similarity=0.278  Sum_probs=71.6

Q ss_pred             eeEEEEec---CC-CEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          270 VLDLAITH---DN-RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       270 v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      |+++++..   +| +.|++|+.|..|++|+-  ...+..+. -.+.|+++.-..  ...|+.+..+|+|-+|+-  ...+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence            55666643   22 57999999999999973  35666666 456777777655  578999999999999985  4445


Q ss_pred             eeeeecCceeEEEEcC-CC---CEEEEecCCCcEE
Q 010470          346 NTIIFHSNCNALAFSM-DG---QTIFSGHIDGNLR  376 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~-~~---~~l~~~~~dg~i~  376 (510)
                      ..+.....+.++.+.. ++   ..|++|-.+|.|-
T Consensus        75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5556666677777654 22   3688898888874

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.00023  Score=72.18  Aligned_cols=102  Identities=17%  Similarity=0.285  Sum_probs=76.4

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCC-cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEE
Q 010470          236 NSARLISGGQDKSIKLWDTNTG-SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCA  314 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  314 (510)
                      -+..++.|++.|.|-..|+... .+...-....++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..|..+.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3557889999999999887643 212222344689999999999999999999999999999999999998877777666


Q ss_pred             EEEecC--CCCEEEEEeCCCcEEEEEC
Q 010470          315 VDVSKI--SSRHVVSAAYDRTLKVWDL  339 (510)
Q Consensus       315 i~~~~~--~~~~l~s~~~dg~i~iwd~  339 (510)
                      +-+.-.  ++..++++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            544321  3446777777776  5544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.90  E-value=0.0093  Score=56.42  Aligned_cols=89  Identities=16%  Similarity=0.199  Sum_probs=60.0

Q ss_pred             EEEEecCCCEEEEeeCCCeEEE---EeCCC-----Ccceec----cccc-ccceeEEEEec-----------CCCEEEEE
Q 010470          230 SILFEYNSARLISGGQDKSIKL---WDTNT-----GSLSST----LYGC-LGSVLDLAITH-----------DNRSVIAA  285 (510)
Q Consensus       230 ~~~~s~~~~~l~s~~~dg~i~i---wd~~~-----~~~~~~----~~~~-~~~v~~~~~~~-----------~~~~l~~~  285 (510)
                      +++.+|+|+.|+.+..+..+.+   |+...     +.....    +... ...|+++.|-|           |...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4678899999999988776665   54311     111111    1111 14677777643           46789999


Q ss_pred             eCCCeEEEEEcCCCCeeEeecCCCCceEEEEEec
Q 010470          286 SSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSK  319 (510)
Q Consensus       286 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  319 (510)
                      ..+|.|++|. ++|..+..-.-|..+|..+.+..
T Consensus        86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence            9999999998 46776666666888888887754

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.89  E-value=0.025  Score=53.75  Aligned_cols=266  Identities=14%  Similarity=0.150  Sum_probs=140.6

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcce--ec-c-cccccceeEEEEec----CCCEEEEEeCCCeEEEEEcCC--CC-----
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLS--ST-L-YGCLGSVLDLAITH----DNRSVIAASSSNNLYVWDVNS--GR-----  300 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~--~~-~-~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~--~~-----  300 (510)
                      +...|++||..|.++||+...+...  .. + ..-..+|..+..-+    .....++.-.-..+.||.+..  |.     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            3468999999999999998543311  01 0 12346777776532    233344445566788888732  11     


Q ss_pred             --eeEeecCCC--CceEEEEEecCC----CCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC
Q 010470          301 --VRHTLTGHT--DKVCAVDVSKIS----SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID  372 (510)
Q Consensus       301 --~~~~~~~~~--~~v~~i~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  372 (510)
                        .+..+..|.  .....+++-|.+    ..++.+-+.||.+.+|+-+.-.....+...--+..+++.+....|++++.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence              112222232  223333333322    467888899999999997654433333332235668888888899999988


Q ss_pred             CcEEEEECCC--------------------Cc---eeeeecccccccEEEE---EEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470          373 GNLRLWDIQT--------------------GK---LLSEVAAHSLAAVTSI---SLSRSGNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       373 g~i~i~d~~~--------------------~~---~~~~~~~~~~~~i~~i---~~~~~~~~l~~~~~d~~i~i~d~~~~  426 (510)
                      ..+..|....                    ++   +-..+...  ..+..|   .++.....+++-+. ..+.+++. +|
T Consensus       196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG--E~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~-~G  271 (418)
T PF14727_consen  196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG--EQALDIQVVRFSSSESDIVVLGE-RSLFCLKD-NG  271 (418)
T ss_pred             eeEEEecHHHhhhccccccccccccccccccccccceeEEECC--ceeEEEEEEEcCCCCceEEEEec-ceEEEEcC-CC
Confidence            8888886421                    11   11111111  233333   33323333333332 23444443 34


Q ss_pred             eeeeEeecCCCeeecCceeEEEcCCC---CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEE---EeCCCCcEEEe
Q 010470          427 EVCGSLRATGNRVASNWSRSCISPDE---SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCS---WSGLGKPLASA  500 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~---~~~~~~~l~s~  500 (510)
                      ......+....+.......+....++   ..+++++.++++.||.  ..+++...+....|| ++.   |..-...|++-
T Consensus       272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~L  348 (418)
T PF14727_consen  272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKGLIVSL  348 (418)
T ss_pred             eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCceEEEE
Confidence            44333333333222111111111222   2488889999999996  344444444333343 332   33334478888


Q ss_pred             eCCCeEEE
Q 010470          501 DKNGVVCV  508 (510)
Q Consensus       501 ~~dg~i~i  508 (510)
                      +.+|.+.+
T Consensus       349 s~~G~L~v  356 (418)
T PF14727_consen  349 SDEGQLSV  356 (418)
T ss_pred             cCCCcEEE
Confidence            88888765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.88  E-value=0.0013  Score=65.82  Aligned_cols=216  Identities=15%  Similarity=0.153  Sum_probs=116.8

Q ss_pred             CCEEEEEeCC------CeEEEEEcCCCCeeEeecC-CCCceEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEe
Q 010470          279 NRSVIAASSS------NNLYVWDVNSGRVRHTLTG-HTDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCV  345 (510)
Q Consensus       279 ~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~  345 (510)
                      +..+++|+.+      ..+..||..++.......- ....-.++++.  ++.+.++||.|      .++..||...++..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            4445555544      3677888877643322211 22223444444  46888889888      36788898887744


Q ss_pred             eeeeecCc--eeEEEEcCCCCEEEEecCCCc-----EEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCC-
Q 010470          346 NTIIFHSN--CNALAFSMDGQTIFSGHIDGN-----LRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDN-  416 (510)
Q Consensus       346 ~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~-  416 (510)
                      ..-.....  -.+++. -+|...++|+.||.     +-.||..+.+--..-.... .......  .-+|.+.++|+.++ 
T Consensus       363 ~~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGS  439 (571)
T ss_pred             ccCCccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCC
Confidence            42222211  112222 27888889998874     7788876654221111111 0112222  23577778887554 


Q ss_pred             -----cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC-----eEEEEeCCCcc--eeecccccCcC
Q 010470          417 -----LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG-----SVYIWSISKAD--IVRTLKEHTAP  484 (510)
Q Consensus       417 -----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~--~~~~~~~~~~~  484 (510)
                           .+..||..+..-...-.........    -...-++.+.++|+.||     +|..||..+.+  .+.......+.
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~----g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~  515 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSGF----GVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA  515 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccccc----eEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence                 5677888765443222222111111    12234677888888776     37778877654  33333333333


Q ss_pred             EEEEEEeCCCCcEEEeeCCCe
Q 010470          485 VLSCSWSGLGKPLASADKNGV  505 (510)
Q Consensus       485 v~~~~~~~~~~~l~s~~~dg~  505 (510)
                      +..+.+  ++...++||.||.
T Consensus       516 ~g~~~~--~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  516 VGVVVL--GGKLYAVGGFDGN  534 (571)
T ss_pred             ccEEEE--CCEEEEEecccCc
Confidence            333333  5667778887765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.82  E-value=0.027  Score=52.64  Aligned_cols=223  Identities=17%  Similarity=0.192  Sum_probs=105.8

Q ss_pred             CCCEEEEee-CCCeEEEEeCCCC----cceecccc-------cccceeEEEEecCCCEEEEEeC------CCeEEEEEcC
Q 010470          236 NSARLISGG-QDKSIKLWDTNTG----SLSSTLYG-------CLGSVLDLAITHDNRSVIAASS------SNNLYVWDVN  297 (510)
Q Consensus       236 ~~~~l~s~~-~dg~i~iwd~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~  297 (510)
                      +.++|+..+ .++.|.|+|+.+.    +..+.+..       .-.....+..-|+|..++++-.      -|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            355676666 6789999998743    22233321       1123344555688988888632      2578888887


Q ss_pred             CCCeeEeecCCC---CceEEEEEecCCCCEEEEEeC--------------------CCcEEEEECCCCeEeeeeeecCc-
Q 010470          298 SGRVRHTLTGHT---DKVCAVDVSKISSRHVVSAAY--------------------DRTLKVWDLHKGYCVNTIIFHSN-  353 (510)
Q Consensus       298 ~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~-  353 (510)
                      +.+.........   ..-+.+-|.| ..+.++|+..                    ..++.+||+.+.+.++++..... 
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            777776665422   2345677777 6777777643                    46899999999999999987642 


Q ss_pred             --eeEEEEc--CCCCEEEEec-CCCcEEEEEC-CCCc----eeeeeccc--------c--------cccEEEEEEcCCCC
Q 010470          354 --CNALAFS--MDGQTIFSGH-IDGNLRLWDI-QTGK----LLSEVAAH--------S--------LAAVTSISLSRSGN  407 (510)
Q Consensus       354 --i~~i~~~--~~~~~l~~~~-~dg~i~i~d~-~~~~----~~~~~~~~--------~--------~~~i~~i~~~~~~~  407 (510)
                        +..+.|.  |+..+=++|+ -.++|..|-- ..+.    .+..+...        .        ..-|+.|.+|.|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence              5566664  4444444333 3344544432 3332    12222111        0        14589999999999


Q ss_pred             EEEEEe-cCCcEEEEEcCC---ceeeeEeecC------------CCeeecCceeEEEcCCCCEEEEEc
Q 010470          408 IILTSG-RDNLHNLFDIRS---LEVCGSLRAT------------GNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       408 ~l~~~~-~d~~i~i~d~~~---~~~~~~~~~~------------~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      +|++++ ..|.++.||+..   .+.+..+...            +..+......+.+|.||+.|+..+
T Consensus       325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            988776 578999999975   2333332211            112222334578899999888765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.82  E-value=0.013  Score=57.00  Aligned_cols=219  Identities=13%  Similarity=0.135  Sum_probs=112.8

Q ss_pred             ceeEEEEecCCCEEEEEe-CCC----eEEEEEcCCCCeeEee-cCCCCceEEEEEecCCCCEEEEEeCC-----------
Q 010470          269 SVLDLAITHDNRSVIAAS-SSN----NLYVWDVNSGRVRHTL-TGHTDKVCAVDVSKISSRHVVSAAYD-----------  331 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~-~d~----~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~d-----------  331 (510)
                      .+..+.++|+|++++.+- ..|    .++++|+.+|+.+... ..  .....+.|.+ ++..|+....+           
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCC
Confidence            344678999999988763 333    6999999999765432 21  1122389998 54444443322           


Q ss_pred             CcEEEEECCCCeEe--eeeeec--Cc-eeEEEEcCCCCEEEEecC---C-CcEEEEECCCC----ceeeeecccccccEE
Q 010470          332 RTLKVWDLHKGYCV--NTIIFH--SN-CNALAFSMDGQTIFSGHI---D-GNLRLWDIQTG----KLLSEVAAHSLAAVT  398 (510)
Q Consensus       332 g~i~iwd~~~~~~~--~~~~~~--~~-i~~i~~~~~~~~l~~~~~---d-g~i~i~d~~~~----~~~~~~~~~~~~~i~  398 (510)
                      ..|+.|.+.++..-  ..+...  .. ...+..++++++++....   + ..+++.|+..+    .....+.....+...
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence            24788888765432  222222  22 557888999999875332   2 45888888764    233333333313333


Q ss_pred             EEEEcCCCCEEEEEec---CCcEEEEEcCCcee---eeEeecCCCeeecCceeEEEcCCCCEEEE-EcCCC--eEEEEeC
Q 010470          399 SISLSRSGNIILTSGR---DNLHNLFDIRSLEV---CGSLRATGNRVASNWSRSCISPDESYVAA-GSADG--SVYIWSI  469 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg--~i~iwd~  469 (510)
                      .+... .+.+++.+..   ++.|.-.++.+...   ...+..+.....-    ..+...+.+|+. ...++  .|+++++
T Consensus       282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l----~~~~~~~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL----EDVSLFKDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE----EEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred             EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE----EEEEEECCEEEEEEEECCccEEEEEEC
Confidence            34333 3334443332   34666677776542   2233333221111    233444555444 44444  5889998


Q ss_pred             CCcceeecccc-cCcCEEEEEEeCCCC
Q 010470          470 SKADIVRTLKE-HTAPVLSCSWSGLGK  495 (510)
Q Consensus       470 ~~~~~~~~~~~-~~~~v~~~~~~~~~~  495 (510)
                      ..+.....+.. -.+.|..+...++++
T Consensus       357 ~~~~~~~~~~~p~~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  357 DDGKESREIPLPEAGSVSGVSGDFDSD  383 (414)
T ss_dssp             T-TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred             CCCcEEeeecCCcceEEeccCCCCCCC
Confidence            83333333322 234456666555555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.78  E-value=0.06  Score=54.97  Aligned_cols=240  Identities=11%  Similarity=0.146  Sum_probs=133.4

Q ss_pred             cceEEEEEec-C---CCEEEEee---CCCeEEEEeCCCCcc---eecccccccceeEEE--EecC-CCEEEEEeCCCeEE
Q 010470          226 GGCASILFEY-N---SARLISGG---QDKSIKLWDTNTGSL---SSTLYGCLGSVLDLA--ITHD-NRSVIAASSSNNLY  292 (510)
Q Consensus       226 ~~v~~~~~s~-~---~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~--~~~~-~~~l~~~~~d~~i~  292 (510)
                      +||..++.-. +   +..++|++   .||++++....-+-.   ...+.| ...++.+.  ++++ ..+++.+-. +.-+
T Consensus       354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~eTr  431 (1096)
T KOG1897|consen  354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-SETR  431 (1096)
T ss_pred             cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-cceE
Confidence            5787777643 2   23566654   388999986432211   122333 34556665  3332 124444433 3344


Q ss_pred             EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC
Q 010470          293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID  372 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  372 (510)
                      +..+...-......+.......+.++...++.++=.. ...|++++-.  .....+..+..++....+.+...++.++.+
T Consensus       432 vl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~  508 (1096)
T KOG1897|consen  432 VLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGG  508 (1096)
T ss_pred             EEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCc
Confidence            5555433122223344444555555554555544443 3467777654  233444455555555555666677878777


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcCCC------CEEEEEecCCcEEEE-EcCCceeeeEeecCCCeeecCcee
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG------NIILTSGRDNLHNLF-DIRSLEVCGSLRATGNRVASNWSR  445 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~------~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~  445 (510)
                      +.+...++..+.............|.|+.++|-|      +++++|..+..+.+. -+.+.............+...+..
T Consensus       509 ~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~  588 (1096)
T KOG1897|consen  509 LALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILL  588 (1096)
T ss_pred             cEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheee
Confidence            8888888776653222222223689999999742      268888777654443 333444433333333444444444


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          446 SCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       446 ~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      .++-.|..+|.++..||.+.-|-+.
T Consensus       589 ~~~e~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  589 TTFEGDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             EEeeccceEEEEEcCCceEEEEEEE
Confidence            5666778999999999988766443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.00013  Score=69.48  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=78.0

Q ss_pred             CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-Ccee-EEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 010470          309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCN-ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL  386 (510)
Q Consensus       309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~-~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  386 (510)
                      ...+.-+.|+| .-.+++.+..+|.|.+.-+. .+.+.++..+ .+++ +++|.|||+.|++|-.||+|++.|..++..+
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            35677889999 88899999999999999887 6777787744 4566 9999999999999999999999999999888


Q ss_pred             eeecccccccEEEEEEcC
Q 010470          387 SEVAAHSLAAVTSISLSR  404 (510)
Q Consensus       387 ~~~~~~~~~~i~~i~~~~  404 (510)
                      ..+.......|.++.|++
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            775433336788888864

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0017  Score=60.95  Aligned_cols=140  Identities=14%  Similarity=0.178  Sum_probs=96.4

Q ss_pred             EEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE-------EEEecCCCcEEEEECCCCce--eeeeccc--
Q 010470          324 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT-------IFSGHIDGNLRLWDIQTGKL--LSEVAAH--  392 (510)
Q Consensus       324 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~-------l~~~~~dg~i~i~d~~~~~~--~~~~~~~--  392 (510)
                      ++.++.....++-.|++.|+.+.....+..|+-+.+.|+.+.       -++|-.+..|.-||+|-...  +.....+  
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            445566677899999999999999999988999999887542       34577788999999984322  1111111  


Q ss_pred             -ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          393 -SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       393 -~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                       ......|++-..+ .++++|+.+|.|++||--.......+++.+.++.    .+..+.+|++|++.+ +.++.+.++
T Consensus       428 ~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~----hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  428 STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK----HVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCcee----eEEeeccCcEEEEec-ccEEEEEEE
Confidence             1134555555444 4789999999999999743333334445554444    488999999988777 445666664

>smart00320 WD40 WD40 repeats

Probab=97.75  E-value=6.8e-05  Score=44.35  Aligned_cols=37  Identities=32%  Similarity=0.574  Sum_probs=33.5

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEe
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD  253 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  253 (510)
                      +...+.+|...|.++.|++++..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4566778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.74  E-value=0.017  Score=50.22  Aligned_cols=103  Identities=17%  Similarity=0.268  Sum_probs=72.6

Q ss_pred             CceEEEEEecCCCCEEEEEeCCCc-EEEEECCCCeEeeeeeecCc---eeEEEEcCCCCEEEEecC-----CCcEEEEEC
Q 010470          310 DKVCAVDVSKISSRHVVSAAYDRT-LKVWDLHKGYCVNTIIFHSN---CNALAFSMDGQTIFSGHI-----DGNLRLWDI  380 (510)
Q Consensus       310 ~~v~~i~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~---i~~i~~~~~~~~l~~~~~-----dg~i~i~d~  380 (510)
                      ..-..+.++|....-++.+-.-|+ ..+||....+...++.....   .-.-+|+|||.+|+..-.     .|.|-|||.
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence            334557788866666777666554 56889888776666654322   345678999999987533     478999999


Q ss_pred             CCC-ceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470          381 QTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSG  413 (510)
Q Consensus       381 ~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  413 (510)
                      +.+ ..+-.+..+. -....+.+.+||+.++...
T Consensus       148 r~~fqrvgE~~t~G-iGpHev~lm~DGrtlvvan  180 (366)
T COG3490         148 REGFQRVGEFSTHG-IGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccccceecccccCC-cCcceeEEecCCcEEEEeC
Confidence            754 4455666665 5678899999999888764

>smart00320 WD40 WD40 repeats

Probab=97.73  E-value=7.5e-05  Score=44.13  Aligned_cols=38  Identities=45%  Similarity=0.745  Sum_probs=33.2

Q ss_pred             ceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          473 DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       473 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+...+..|...|.++.|++++..+++++.||.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44556667888999999999999999999999999997

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.72  E-value=0.0069  Score=60.73  Aligned_cols=185  Identities=18%  Similarity=0.195  Sum_probs=101.2

Q ss_pred             CceEEEEEecCCCCEEEEEe------CC--CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC---------
Q 010470          310 DKVCAVDVSKISSRHVVSAA------YD--RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID---------  372 (510)
Q Consensus       310 ~~v~~i~~~~~~~~~l~s~~------~d--g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------  372 (510)
                      ..+.+.+++| ++..++...      .|  ..|.+++.. +.. ..+........-.|+|+|..+++....         
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4677888999 565555443      23  356666653 322 333333347889999998877765432         


Q ss_pred             ---CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE---EEcCCceeeeEeec---CCCeeecCc
Q 010470          373 ---GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL---FDIRSLEVCGSLRA---TGNRVASNW  443 (510)
Q Consensus       373 ---g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i---~d~~~~~~~~~~~~---~~~~~~~~~  443 (510)
                         +.+++.++..+....    ...+.|..+.|||||..++... ++.|++   -....+.  ..+..   -........
T Consensus       427 ~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        427 PATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTA  499 (591)
T ss_pred             CCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCcc
Confidence               233333443333222    1125799999999999888766 467766   3433443  11100   000111112


Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeecccc--cCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470          444 SRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKE--HTAPVLSCSWSGLGKPLASADKNGVVC  507 (510)
Q Consensus       444 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~  507 (510)
                      ..+.|..++.++ ++..++...+|.+.- |.....+..  ...++.+++=+++  .++..+.+|.+.
T Consensus       500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        500 VSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            347899999865 444444444554332 222222232  3567777877763  455656666554

>PRK10115 protease 2; Provisional

Probab=97.72  E-value=0.081  Score=54.68  Aligned_cols=240  Identities=8%  Similarity=0.052  Sum_probs=120.2

Q ss_pred             ceEEEEEecCCCEEEEeeCC-----CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC------CeEEEEE
Q 010470          227 GCASILFEYNSARLISGGQD-----KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS------NNLYVWD  295 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd  295 (510)
                      .+..+.+||||++|+.+.+.     ..|++.|+.+|..+........  ..++|.+|++.|+.+..+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            47778999999988765432     3588999988864332222211  459999999877766542      3688888


Q ss_pred             cCCC--CeeEeecCCCCceEEEEEecCCCCEEEEEeC---CCcEEEEECC--CCeEeeeeeecCceeEEEEcCCCCEEEE
Q 010470          296 VNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---DRTLKVWDLH--KGYCVNTIIFHSNCNALAFSMDGQTIFS  368 (510)
Q Consensus       296 ~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~---dg~i~iwd~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~  368 (510)
                      +.++  +-...+........-..+.+.++.+++..+.   ++.+.+++..  ++.....+.....+..-..+..+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~  285 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLR  285 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEE
Confidence            8887  3333444333333322233325555544332   4578888843  3332222222222221112223333332


Q ss_pred             ec---CCCcEEEEECCCCceeeeeccc-ccccEEEEEEcCCCCEEEEEecCCcEEE--EEcCCceeeeEeecCCCeeecC
Q 010470          369 GH---IDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGRDNLHNL--FDIRSLEVCGSLRATGNRVASN  442 (510)
Q Consensus       369 ~~---~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~i--~d~~~~~~~~~~~~~~~~~~~~  442 (510)
                      ..   ....|...++........+..+ ....+..+.+. .+.++++...+|.-.+  ++..+.. ...+........  
T Consensus       286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~~~--  361 (686)
T PRK10115        286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDPAYV--  361 (686)
T ss_pred             EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCCceE--
Confidence            22   2223444455422222233333 22468888887 3345555555665444  4543332 222221111110  


Q ss_pred             ceeEEEc--CCCC-EEEEEcC---CCeEEEEeCCCcc
Q 010470          443 WSRSCIS--PDES-YVAAGSA---DGSVYIWSISKAD  473 (510)
Q Consensus       443 ~~~~~~s--~~~~-~l~~~~~---dg~i~iwd~~~~~  473 (510)
                       ..+.++  +++. ++++.++   -+.++.||+.+++
T Consensus       362 -~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        362 -TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             -eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence             112233  4443 4443332   4678888887654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.71  E-value=0.0098  Score=59.67  Aligned_cols=170  Identities=18%  Similarity=0.194  Sum_probs=95.1

Q ss_pred             CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe------CCC--eEEEEEcCCCCeeEeecCCCCceEEEEE
Q 010470          246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS------SSN--NLYVWDVNSGRVRHTLTGHTDKVCAVDV  317 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~i~~  317 (510)
                      +|.+.-.+-..-..+.-..+....+.+.+++|+|+.++...      .|+  .|.+++. .+.......+  ...+.-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceE
Confidence            56555443222222222223345678899999999887765      243  4555554 2333222232  23778889


Q ss_pred             ecCCCCEEEEEeC------------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE---EECCC
Q 010470          318 SKISSRHVVSAAY------------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL---WDIQT  382 (510)
Q Consensus       318 ~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i---~d~~~  382 (510)
                      +| ++..+++...            .+.+.+.++..+....  .....|..+.|+|||..++... +|.|++   -....
T Consensus       405 sp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~  480 (591)
T PRK13616        405 SL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED  480 (591)
T ss_pred             CC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence            98 5555555432            2344444554443322  3345699999999999888765 477777   44344


Q ss_pred             Cce-e---eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          383 GKL-L---SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       383 ~~~-~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      |.. +   ..+.......+.++.|.+++.++ ++..++...+|.+
T Consensus       481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            431 1   11222221346889999998865 4444444444443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=0.019  Score=50.32  Aligned_cols=192  Identities=12%  Similarity=0.148  Sum_probs=122.3

Q ss_pred             cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 010470          306 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG  383 (510)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  383 (510)
                      .+-...+.++.|+| +.+.|++......-.||=...|..+.++...  +..-.+.+.-+|.+.++--.++.++++.+...
T Consensus        82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            44455699999999 6666666666666666666679999888655  45778888888888888888999998877654


Q ss_pred             ceeeeec---------ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec------CCCeeecCceeEEE
Q 010470          384 KLLSEVA---------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA------TGNRVASNWSRSCI  448 (510)
Q Consensus       384 ~~~~~~~---------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~  448 (510)
                      ..+..+.         .+.....-.++|+|....|+.+-.-+-+.||.............      ........++.+.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            3222111         12136788999999999988888888777777653221111111      11112234556777


Q ss_pred             cC-CCCEEEEEcCCCeEEEEeCCCcceeecccc----c--C---cCEEEEEEeCCCCcEEE
Q 010470          449 SP-DESYVAAGSADGSVYIWSISKADIVRTLKE----H--T---APVLSCSWSGLGKPLAS  499 (510)
Q Consensus       449 s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~--~---~~v~~~~~~~~~~~l~s  499 (510)
                      .+ .+.+++-+..++.+.-.|.. |.++..+..    |  .   ...-+++..++|..-++
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            76 45666667777777777754 443333321    1  1   12356788777764333

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.68  E-value=0.034  Score=49.13  Aligned_cols=221  Identities=12%  Similarity=0.144  Sum_probs=129.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcC------CC-CeeEeecC-----CCCceEEEEEecCC-----------CCEE
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVN------SG-RVRHTLTG-----HTDKVCAVDVSKIS-----------SRHV  325 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~-----------~~~l  325 (510)
                      .-+.|+++|.+...++....+...+||..      .. .++-++..     .....+.+.|+...           ...+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999999988888888999999986      11 23334432     12456777776521           1236


Q ss_pred             EEEeCCCcEEEEECCCCeE-----eeeeeec--Cc-eeEEEEcC--CCCEEEEe-cCCCcEEEEECCCCceee--eeccc
Q 010470          326 VSAAYDRTLKVWDLHKGYC-----VNTIIFH--SN-CNALAFSM--DGQTIFSG-HIDGNLRLWDIQTGKLLS--EVAAH  392 (510)
Q Consensus       326 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~--~~-i~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~--~~~~~  392 (510)
                      +.++.||+|.-|...-+..     ...+...  .. ...+++..  .+.+|+.. -..++|.+||-.-.+...  .+...
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            7788899999998543222     1111111  11 34555543  35566544 467899999854322211  11111


Q ss_pred             c---c------------ccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC------C
Q 010470          393 S---L------------AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP------D  451 (510)
Q Consensus       393 ~---~------------~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~  451 (510)
                      .   .            --|+-..-.++++.=+.+..-|.|-+||+. +..++.+ .+......+|- ++..|      .
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~-as~g~LNaPWG-~a~APa~FG~~s  260 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRV-ASSGRLNAPWG-LAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEe-ccCCcccCCce-eeeChhhhCCCC
Confidence            0   0            011112222333333334455789999985 4555555 33444444443 55543      5


Q ss_pred             CCEEEEEcCCCeEEEEeCCCcceeecccccC------cCEEEEEEeC
Q 010470          452 ESYVAAGSADGSVYIWSISKADIVRTLKEHT------APVLSCSWSG  492 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~  492 (510)
                      |.+|+---.||+|..||..++..+..+....      ..++.++|..
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            6777777779999999999998877776533      2457788865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00026  Score=67.57  Aligned_cols=92  Identities=10%  Similarity=0.099  Sum_probs=80.7

Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceE-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVC-AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      ...+.-+.|+|.-..++.+..+|.|.+..++ .+.+.++..|...++ +++|.| +++.++.|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            4467789999999999999999999999988 778888887888887 999999 7999999999999999999999888


Q ss_pred             ee--eeecCceeEEEEc
Q 010470          346 NT--IIFHSNCNALAFS  360 (510)
Q Consensus       346 ~~--~~~~~~i~~i~~~  360 (510)
                      ..  +....++.++-|.
T Consensus        98 ~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWD  114 (665)
T ss_pred             eccccccccchheeecc
Confidence            87  4555668888886

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.66  E-value=0.023  Score=49.84  Aligned_cols=163  Identities=13%  Similarity=0.198  Sum_probs=107.7

Q ss_pred             ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC-CCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470          263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH-TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      +.+-...+.++.|+|+.+.|++..+...-.||=-..|+.+.++.-. -...-.|.+.. ++.++++--.++.+.++.+..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcC
Confidence            3455566999999999999999998888778766779988887521 22334566765 666777777788888887765


Q ss_pred             CeEeee-----eee------cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee---cccc------cccEEEEE
Q 010470          342 GYCVNT-----IIF------HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV---AAHS------LAAVTSIS  401 (510)
Q Consensus       342 ~~~~~~-----~~~------~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~------~~~i~~i~  401 (510)
                      +..+..     +..      +...-.++|+|.+..|+.+-...-+.||....+......   ..+.      ...+.++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            432211     111      233678999998888888887777777766433211111   1110      13467788


Q ss_pred             EcCC-CCEEEEEecCCcEEEEEcCCc
Q 010470          402 LSRS-GNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       402 ~~~~-~~~l~~~~~d~~i~i~d~~~~  426 (510)
                      |++. +.+++.+..++.+.-.|....
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC
Confidence            8864 556666777777777776543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.60  E-value=0.036  Score=57.33  Aligned_cols=195  Identities=15%  Similarity=0.144  Sum_probs=123.3

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceeccccccc--------ceeEEEEe----------------cCCCEEEEEeCCCeEE
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLG--------SVLDLAIT----------------HDNRSVIAASSSNNLY  292 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~~----------------~~~~~l~~~~~d~~i~  292 (510)
                      +..++.++.++.|.-.|..+|+.+..+.....        ....+.+.                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            56788888889999999999988766543221        01223332                1345788899999999


Q ss_pred             EEEcCCCCeeEeecCCCCceE-------------EEEEecC-CCCEEEEEeC----------CCcEEEEECCCCeEeeee
Q 010470          293 VWDVNSGRVRHTLTGHTDKVC-------------AVDVSKI-SSRHVVSAAY----------DRTLKVWDLHKGYCVNTI  348 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~-------------~i~~~~~-~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~  348 (510)
                      -.|..+|+.+..+.. .+.|.             .+.-.|. .+..+++|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998877642 11110             0111110 2345666643          688999999999988876


Q ss_pred             eecC------------------ce-eEEEEcCCCCEEEEec------------------CCCcEEEEECCCCceeeeecc
Q 010470          349 IFHS------------------NC-NALAFSMDGQTIFSGH------------------IDGNLRLWDIQTGKLLSEVAA  391 (510)
Q Consensus       349 ~~~~------------------~i-~~i~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~  391 (510)
                      ....                  .+ ..+++++....++.+.                  ..+.|.-.|.++|+....+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            5320                  01 2345555544444322                  134577778889988887765


Q ss_pred             cc-c-------ccEEEEEEcC-CCC---EEEEEecCCcEEEEEcCCceeeeEe
Q 010470          392 HS-L-------AAVTSISLSR-SGN---IILTSGRDNLHNLFDIRSLEVCGSL  432 (510)
Q Consensus       392 ~~-~-------~~i~~i~~~~-~~~---~l~~~~~d~~i~i~d~~~~~~~~~~  432 (510)
                      .+ .       ....-+.+.. +|.   .++.++.+|.++++|.++++.+...
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            22 0       1122233333 553   7899999999999999998877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.59  E-value=0.047  Score=51.12  Aligned_cols=223  Identities=16%  Similarity=0.132  Sum_probs=105.6

Q ss_pred             CCCEEEEEe-CCCeEEEEEcCCC----CeeEeecC---CC----CceEEEEEecCCCCEEEEEeC------CCcEEEEEC
Q 010470          278 DNRSVIAAS-SSNNLYVWDVNSG----RVRHTLTG---HT----DKVCAVDVSKISSRHVVSAAY------DRTLKVWDL  339 (510)
Q Consensus       278 ~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~~~---~~----~~v~~i~~~~~~~~~l~s~~~------dg~i~iwd~  339 (510)
                      +.++|+..+ ..+.|+|+|+.+.    +..+.+..   +.    .....+...| ++.+++|+-.      -|.+.++|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence            466788777 6789999998743    23344332   11    1223344445 6777777532      357888888


Q ss_pred             CCCeEeeeeeecCc----eeEEEEcCCCCEEEEecC--------------------CCcEEEEECCCCceeeeecccccc
Q 010470          340 HKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHI--------------------DGNLRLWDIQTGKLLSEVAAHSLA  395 (510)
Q Consensus       340 ~~~~~~~~~~~~~~----i~~i~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~~  395 (510)
                      ++............    -..+-+.|..+.+++...                    ..++.+||+.+.+.++.+.....+
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            87776666654322    467778888887776542                    347999999999999998876433


Q ss_pred             -cEEEEEEcCC--CCEEEEE-ecCCcEEEEEc-CCce--eeeEeecCCC---------------eeecCceeEEEcCCCC
Q 010470          396 -AVTSISLSRS--GNIILTS-GRDNLHNLFDI-RSLE--VCGSLRATGN---------------RVASNWSRSCISPDES  453 (510)
Q Consensus       396 -~i~~i~~~~~--~~~l~~~-~~d~~i~i~d~-~~~~--~~~~~~~~~~---------------~~~~~~~~~~~s~~~~  453 (510)
                       .+..|.|..+  ..+=+++ --.+.|..|-- ..+.  ....+.....               .+..-++.+.+|.|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence             4556777544  4443333 33444544433 3222  1112211111               1123456688999999


Q ss_pred             EEEEEcC-CCeEEEEeCCCcc---eeeccc----------------ccCcCEEEEEEeCCCCcEEEee
Q 010470          454 YVAAGSA-DGSVYIWSISKAD---IVRTLK----------------EHTAPVLSCSWSGLGKPLASAD  501 (510)
Q Consensus       454 ~l~~~~~-dg~i~iwd~~~~~---~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~  501 (510)
                      +|+.++. .|.|+.||+....   ++..+.                .-.+...-+..|-||+.|...+
T Consensus       325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            9887665 8999999997632   222211                0122346677888888776543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.58  E-value=0.048  Score=48.29  Aligned_cols=209  Identities=14%  Similarity=0.155  Sum_probs=125.5

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCC-------Ccceecccc-----cccceeEEEEecCCC------------EE
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNT-------GSLSSTLYG-----CLGSVLDLAITHDNR------------SV  282 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l  282 (510)
                      --+.|+|+|.+.+-++....+...+||.+.       ..++.++..     ..+..+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            357899999998888888889999999861       122333331     234677888875333            36


Q ss_pred             EEEeCCCeEEEEEcCCCCe-----eEeec-CCCCce-EEEEEecC-CCCEEE-EEeCCCcEEEEECCCCeEe--eeeeec
Q 010470          283 IAASSSNNLYVWDVNSGRV-----RHTLT-GHTDKV-CAVDVSKI-SSRHVV-SAAYDRTLKVWDLHKGYCV--NTIIFH  351 (510)
Q Consensus       283 ~~~~~d~~i~iwd~~~~~~-----~~~~~-~~~~~v-~~i~~~~~-~~~~l~-s~~~dg~i~iwd~~~~~~~--~~~~~~  351 (510)
                      +.++.||+|.-|...-+..     ...+. .....| ..+++... .+++|+ +--..+.|.|||-.-....  ..+..+
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            7788999999998532222     12222 112333 34555432 234444 4445789999986422211  001100


Q ss_pred             -----C-c-----------eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc-ccccEEEEEEcC------CCC
Q 010470          352 -----S-N-----------CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSR------SGN  407 (510)
Q Consensus       352 -----~-~-----------i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~------~~~  407 (510)
                           . +           |+...-.++++.=+.|-.-|.|-+||+ .|..++++... .......|+..|      .|.
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence                 0 0           111122233333334555689999997 78888877433 224566677655      577


Q ss_pred             EEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470          408 IILTSGRDNLHNLFDIRSLEVCGSLRATG  436 (510)
Q Consensus       408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  436 (510)
                      +|+---.||+|..||..++..+..+....
T Consensus       263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~  291 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGAQLGQLLDPD  291 (336)
T ss_pred             eEEeecCCceeEEecCCCCceeeeecCCC
Confidence            88888889999999999888877776543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein

Probab=97.56  E-value=0.0014  Score=43.29  Aligned_cols=58  Identities=17%  Similarity=0.201  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           81 SSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEM  138 (510)
Q Consensus        81 ~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~  138 (510)
                      .++++.+.+.-+.-++++++.++++++.+...+.+++++.+..+..|+++++..+..+
T Consensus        12 ~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l   69 (70)
T PF08606_consen   12 TLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence            3455566666667779999999999999999999999999999999999999887654

The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.53  E-value=0.066  Score=48.65  Aligned_cols=271  Identities=12%  Similarity=0.083  Sum_probs=121.4

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc--ccc---ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL--YGC---LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR  300 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  300 (510)
                      .++..|.|..+..-+++|. .+.| +-..+.|+.-...  ...   .-...++.|..+ ..++ ++..+. .+...+.|+
T Consensus        17 ~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG~   91 (302)
T PF14870_consen   17 KPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPGL-LLHTTDGGK   91 (302)
T ss_dssp             S-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETTE-EEEESSTTS
T ss_pred             CceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCce-EEEecCCCC
Confidence            4788999985555555554 5543 2222333321111  111   123566777643 3344 444453 333444454


Q ss_pred             eeEeec---CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEEEecCCCcE
Q 010470          301 VRHTLT---GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       301 ~~~~~~---~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                      .-..+.   .-......+.... ++ .+...+..|.|+.=. ..|+.=..+.  ....+..+..+++|.+++++......
T Consensus        92 tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~  168 (302)
T PF14870_consen   92 TWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY  168 (302)
T ss_dssp             S-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred             CcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence            332221   1223334444433 23 333334445443322 2232222222  22457888889999999888765555


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc-CCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI-RSLEVCGSLRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      .-||.-... -..........|.++.|+|++.+.+++ ..|.|++=+. ........-..........+..+++.+++..
T Consensus       169 ~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~  246 (302)
T PF14870_consen  169 SSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI  246 (302)
T ss_dssp             EEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred             EEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence            677743221 222222223789999999998876655 8888888772 2222221111111111222455789988888


Q ss_pred             EEEEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          455 VAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      .++|+ .|.+ +...+.|+.-..-+   .-...+..+.|.++.+ -...+.+|.|--|
T Consensus       247 wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~  301 (302)
T PF14870_consen  247 WAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred             EEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence            77766 4533 34445555433322   2345678888876544 4445578887655

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.50  E-value=0.021  Score=48.16  Aligned_cols=142  Identities=14%  Similarity=0.198  Sum_probs=90.2

Q ss_pred             cceeEEEEecCCCEEEEEeCC---------CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          268 GSVLDLAITHDNRSVIAASSS---------NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      ...++-..+|+|+++.-.-.|         |.++.|-.  +..+..+...-.--..++|......+.++-+.+-+|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            345566778999984322222         44555532  2222222223334466888864445556666778887787


Q ss_pred             --CCCCe-----Eeeeeeec-----CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC-C
Q 010470          339 --LHKGY-----CVNTIIFH-----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR-S  405 (510)
Q Consensus       339 --~~~~~-----~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~  405 (510)
                        ..+|.     .+..+...     ..+..+++..+|++.++.-..|+|..+|+.+|+.+..+..+. ..++|++|-- +
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt-~qitsccFgGkn  265 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT-PQITSCCFGGKN  265 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC-CceEEEEecCCC
Confidence              55543     22222221     125567777789999998899999999999999999999886 8899999964 3


Q ss_pred             CCEEEEE
Q 010470          406 GNIILTS  412 (510)
Q Consensus       406 ~~~l~~~  412 (510)
                      -..+++.
T Consensus       266 ~d~~yvT  272 (310)
T KOG4499|consen  266 LDILYVT  272 (310)
T ss_pred             ccEEEEE
Confidence            3444444

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.49  E-value=0.099  Score=49.78  Aligned_cols=143  Identities=14%  Similarity=0.183  Sum_probs=87.2

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCC-----eeEeecCCCCceEEEEEecC---CCCEEEEEeCCCcEEEEECCC--Ce-----
Q 010470          279 NRSVIAASSSNNLYVWDVNSGR-----VRHTLTGHTDKVCAVDVSKI---SSRHVVSAAYDRTLKVWDLHK--GY-----  343 (510)
Q Consensus       279 ~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~---~~~~l~s~~~dg~i~iwd~~~--~~-----  343 (510)
                      ...|++|+..|.++||+...+.     .+-. ..-..+|..+..-+.   .....++.-.-..+.+|.+..  |.     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            4579999999999999985543     1111 124567777665431   222233334466777777621  11     


Q ss_pred             --Eeeee---eecCceeEEEEcCC-----CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe
Q 010470          344 --CVNTI---IFHSNCNALAFSMD-----GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG  413 (510)
Q Consensus       344 --~~~~~---~~~~~i~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  413 (510)
                        .+..+   ........+++-|-     ..+|++-+-||.+.+|+-+.......+..  .--+..+.|.+.-+.|++++
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecCCEEEEec
Confidence              11111   22233445555442     35778889999999999655443333333  24455688889889999999


Q ss_pred             cCCcEEEEEcC
Q 010470          414 RDNLHNLFDIR  424 (510)
Q Consensus       414 ~d~~i~i~d~~  424 (510)
                      .+..+.-|...
T Consensus       194 ss~~l~~Yky~  204 (418)
T PF14727_consen  194 SSWTLECYKYQ  204 (418)
T ss_pred             CceeEEEecHH
Confidence            88888888653

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.47  E-value=0.095  Score=48.98  Aligned_cols=233  Identities=17%  Similarity=0.166  Sum_probs=118.0

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc---eec----ccccccceeEEEEecC---CCEEEEEeC-C-------
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSL---SST----LYGCLGSVLDLAITHD---NRSVIAASS-S-------  288 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~----~~~~~~~v~~~~~~~~---~~~l~~~~~-d-------  288 (510)
                      ..++|+|.|||.++++ ...|.|++++ ..+..   +..    ..........++++|+   +.+|++... .       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999977665 5599999999 33332   222    2234567899999994   344444333 1       


Q ss_pred             -CeEEEEEcCCC--C------eeEeecC---CCCceEEEEEecCCCCEEEEEeCC-------------CcEEEEECCCCe
Q 010470          289 -NNLYVWDVNSG--R------VRHTLTG---HTDKVCAVDVSKISSRHVVSAAYD-------------RTLKVWDLHKGY  343 (510)
Q Consensus       289 -~~i~iwd~~~~--~------~~~~~~~---~~~~v~~i~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~  343 (510)
                       ..|.-|....+  .      .+..+..   ....-..+.|.| ++.+.++.+..             |.|.-.+.. +.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~  158 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GS  158 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SS
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc-Cc
Confidence             24555555443  1      1111222   234456799999 66666665543             233334432 21


Q ss_pred             E-------------eeee-eecCceeEEEEcCC-CCEEEEe-cCCCcEEEEECCCCc-----------------------
Q 010470          344 C-------------VNTI-IFHSNCNALAFSMD-GQTIFSG-HIDGNLRLWDIQTGK-----------------------  384 (510)
Q Consensus       344 ~-------------~~~~-~~~~~i~~i~~~~~-~~~l~~~-~~dg~i~i~d~~~~~-----------------------  384 (510)
                      .             ...+ ....++..++|+|. |.++++- +.++.=.|.-+..|.                       
T Consensus       159 ~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  159 IPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             B-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence            1             0111 12234678999998 6655542 122222222222211                       


Q ss_pred             ------eeeeecccccccEEEEEEcC-------CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          385 ------LLSEVAAHSLAAVTSISLSR-------SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       385 ------~~~~~~~~~~~~i~~i~~~~-------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                            +...+..+  ..+..+.|..       .|.++++....+.|....+.....+.............+..+++.||
T Consensus       239 ~~~~~~P~~~~~~~--~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  239 CPGFVPPVFAYPPH--SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD  316 (331)
T ss_dssp             -TTS---SEEETTT----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred             CCCcCccceeecCc--cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence                  11222222  5666777753       34566666666788888776443222221111222223445889999


Q ss_pred             CCEEEEEcCCCeEE
Q 010470          452 ESYVAAGSADGSVY  465 (510)
Q Consensus       452 ~~~l~~~~~dg~i~  465 (510)
                      |.+.++.+.+|.|+
T Consensus       317 G~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  317 GALYVSDDSDGKIY  330 (331)
T ss_dssp             SEEEEEE-TTTTEE
T ss_pred             CeEEEEECCCCeEe
Confidence            98888877788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.45  E-value=0.00016  Score=60.31  Aligned_cols=140  Identities=13%  Similarity=0.149  Sum_probs=83.2

Q ss_pred             EEEEeCCCeEEEEEcCCCCee-EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeec-Cce-eEE
Q 010470          282 VIAASSSNNLYVWDVNSGRVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNC-NAL  357 (510)
Q Consensus       282 l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i-~~i  357 (510)
                      +...+.+|.|.-+++...+.. +.-..|... ..   .+..+..+++|+.+|.|.+|+..-. .....+... ..+ ..+
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QR---VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc-ee---ecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            455667777777776543311 111112222 11   1224677899999999999988621 111111111 112 222


Q ss_pred             EEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEE--ecCCcEEEEEcCC
Q 010470          358 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS--GRDNLHNLFDIRS  425 (510)
Q Consensus       358 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~d~~i~i~d~~~  425 (510)
                      ....++.+.++++.+|.|+.|++.-.+.+.....|...++.....+..+..+..+  +.|..++.|++..
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            2233556788999999999999988887777666654555555566666666666  6677777777653

>PHA03098 kelch-like protein; Provisional

Probab=97.42  E-value=0.012  Score=59.51  Aligned_cols=184  Identities=16%  Similarity=0.139  Sum_probs=91.9

Q ss_pred             cCCCEEEEeeCCC------eEEEEeCCCCcceec--ccccccceeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCCe
Q 010470          235 YNSARLISGGQDK------SIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGRV  301 (510)
Q Consensus       235 ~~~~~l~s~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~  301 (510)
                      .++..++.||.++      .+..||..+.+....  +.........+  .-++..++.|+.+     ..+..||..+++-
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            4556777777543      577888876654221  11111111222  2367777777754     3577888876653


Q ss_pred             eEeecC-CCCceEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCC
Q 010470          302 RHTLTG-HTDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHID  372 (510)
Q Consensus       302 ~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d  372 (510)
                      ...-.. +...-.+++..  ++.+++.||.+      +.+..||+.+++....-..+.+  ..+++. .++..++.|+.+
T Consensus       371 ~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  447 (534)
T PHA03098        371 REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGIS  447 (534)
T ss_pred             eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCcc
Confidence            221110 11111122222  56777777632      4688999887654432222211  122222 356666677643


Q ss_pred             C--------cEEEEECCCCceeee--ecccccccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCc
Q 010470          373 G--------NLRLWDIQTGKLLSE--VAAHSLAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSL  426 (510)
Q Consensus       373 g--------~i~i~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~  426 (510)
                      +        .+.+||+.+++-...  ...+. .....+.+  ++.+++.|+.+     +.+.+||..+.
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            2        388899876643221  11111 11122222  56666777654     35677776654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.42  E-value=0.038  Score=48.16  Aligned_cols=158  Identities=11%  Similarity=0.151  Sum_probs=103.3

Q ss_pred             CCeEeeeeeecCceeEEEEcCCC-CEEEEecCCCc-EEEEECCCCceeeeecccccc-cEEEEEEcCCCCEEEEEecC--
Q 010470          341 KGYCVNTIIFHSNCNALAFSMDG-QTIFSGHIDGN-LRLWDIQTGKLLSEVAAHSLA-AVTSISLSRSGNIILTSGRD--  415 (510)
Q Consensus       341 ~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d--  415 (510)
                      .|+++.....+.....++++|.- .-++.+-.-|+ ..+||......+..+...... -.-.=.|||||.+|++.-.|  
T Consensus        57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd  136 (366)
T COG3490          57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD  136 (366)
T ss_pred             CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence            46677777777778889999954 45556655555 578898877766555443211 12224699999999987654  


Q ss_pred             ---CcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC------------------CCeEEEEeCCCcc
Q 010470          416 ---NLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA------------------DGSVYIWSISKAD  473 (510)
Q Consensus       416 ---~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------------------dg~i~iwd~~~~~  473 (510)
                         |.|-|||.+. ...+..+..++-....    +.+.+||+.++..+.                  .-++.+.|..+|.
T Consensus       137 ~~rGViGvYd~r~~fqrvgE~~t~GiGpHe----v~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~  212 (366)
T COG3490         137 PNRGVIGVYDAREGFQRVGEFSTHGIGPHE----VTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN  212 (366)
T ss_pred             CCCceEEEEecccccceecccccCCcCcce----eEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc
Confidence               6899999984 4455566655544443    789999999887643                  1123444444555


Q ss_pred             eeec--cc--ccCcCEEEEEEeCCCCcEEEeeC
Q 010470          474 IVRT--LK--EHTAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       474 ~~~~--~~--~~~~~v~~~~~~~~~~~l~s~~~  502 (510)
                      ++..  +.  .+..+|..++..+||..++.|-.
T Consensus       213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             hhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence            4432  22  35567888999999887666543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.41  E-value=0.051  Score=50.42  Aligned_cols=26  Identities=12%  Similarity=0.013  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccchh
Q 010470            7 AREAIKHALKALRKRHLVEEGAHAPA   32 (510)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~   32 (510)
                      +-+.+.|+++.|+++-..-+..+.++
T Consensus        69 ~Lely~~~c~EL~~~I~egr~~~~~~   94 (325)
T PF08317_consen   69 MLELYQFSCRELKKYISEGRQIFEEI   94 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567789999998874444444433

>PRK09039 hypothetical protein; Validated

Probab=97.39  E-value=0.052  Score=50.57  Aligned_cols=106  Identities=11%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESL---------------------ITSLQEELTQIR  104 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------i~~l~~~l~~l~  104 (510)
                      -+.+++..++++|+++.....++++.|.-.......+...+.++...                     ..+++..+.++.
T Consensus        43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~  122 (343)
T PRK09039         43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA  122 (343)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHH
Confidence            35566666666666666666666644433333222222222222211                     112334445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          105 DECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKM  151 (510)
Q Consensus       105 ~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~  151 (510)
                      .++...+..+.+...+...|+.|.++|+.++..++..+...+.....
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~  169 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRE  169 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666667777777777777777777777666555533

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.37  E-value=0.023  Score=57.78  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHhhhhhhhcccchhh
Q 010470            9 EAIKHALKALRKRHLVEEGAHAPAI   33 (510)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~   33 (510)
                      +.=+..+.+|.||.+.|..+...+-
T Consensus       484 q~DKq~l~~LEkrL~eE~~~R~~lE  508 (697)
T PF09726_consen  484 QQDKQSLQQLEKRLAEERRQRASLE  508 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334466666666666555544433

; GO: 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=97.37  E-value=0.16  Score=49.36  Aligned_cols=23  Identities=4%  Similarity=0.188  Sum_probs=10.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhh
Q 010470           46 EWKEKADNLETELQQCYKAQSRL   68 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~   68 (510)
                      .+++++..+++++.+..+.+...
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~   66 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQ   66 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555544444433333

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.00079  Score=68.43  Aligned_cols=105  Identities=17%  Similarity=0.250  Sum_probs=79.0

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec
Q 010470          362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS  441 (510)
Q Consensus       362 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  441 (510)
                      .+-.++.|++.|.+..+|....-.......+..++|++++|+.+|..++.|-.+|.|.+||...++..+.+..++.+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            46678899999999999986532212333344489999999999999999999999999999999999888877777665


Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          442 NWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       442 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      .+. +.+..++..+.++...|.  +|.+
T Consensus       178 vi~-v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIF-VGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEE-EEEeCCCcEEEEccCCCc--eEEE
Confidence            333 344455557777777775  5543

>PHA03098 kelch-like protein; Provisional

Probab=97.32  E-value=0.021  Score=57.68  Aligned_cols=187  Identities=10%  Similarity=0.062  Sum_probs=92.3

Q ss_pred             cCCCEEEEEeCCC------eEEEEEcCCCCeeEee--cCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCe
Q 010470          277 HDNRSVIAASSSN------NLYVWDVNSGRVRHTL--TGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGY  343 (510)
Q Consensus       277 ~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~  343 (510)
                      .++..++.|+.++      .+..||..+++....-  ....... ++.. - ++.+++.||.+     ..+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-F-NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            3566667776432      5778888776542211  1111111 2222 1 56777777765     357788887765


Q ss_pred             EeeeeeecCc--eeEEEEcCCCCEEEEecCC------CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470          344 CVNTIIFHSN--CNALAFSMDGQTIFSGHID------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD  415 (510)
Q Consensus       344 ~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  415 (510)
                      ....-..+.+  -.+++. .++..++.|+.+      ..+..||+.+.+-...-..+....-.++ ...++.+++.|+.+
T Consensus       370 W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~  447 (534)
T PHA03098        370 WREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGIS  447 (534)
T ss_pred             eeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCcc
Confidence            4332221111  122222 356777777632      3588899876543221111110111122 22355666666643


Q ss_pred             --------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCc
Q 010470          416 --------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKA  472 (510)
Q Consensus       416 --------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  472 (510)
                              ..+.+||..+.+-...-........  .  .....++..++.|+.+     +.|.+||..+.
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~--~--~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN--A--SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCccccc--c--eEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence                    2378889876543322111111111  1  1122367777777754     46888887764

>PRK13684 Ycf48-like protein; Provisional

Probab=97.31  E-value=0.15  Score=47.71  Aligned_cols=272  Identities=13%  Similarity=0.090  Sum_probs=131.5

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec----ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST----LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR  300 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  300 (510)
                      ...+.+|.|.....-+++|. +|.|..= .+.|+.-..    +......+.++.|.++ ..++ ++..+.|..- -+.|+
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~-~G~~g~i~~S-~DgG~  119 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWI-VGQPSLLLHT-TDGGK  119 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEE-eCCCceEEEE-CCCCC
Confidence            45788999986566566664 4543321 122322111    1112334677877643 3333 3444544332 22233


Q ss_pred             eeEeec---CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEEEecCCCcE
Q 010470          301 VRHTLT---GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       301 ~~~~~~---~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                      .-..+.   ...+....+.... .+..++ ++..|.|..=+- .|+.-..+.  ....+.++.+.|++.+++++. .|.+
T Consensus       120 tW~~~~~~~~~~~~~~~i~~~~-~~~~~~-~g~~G~i~~S~D-gG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i  195 (334)
T PRK13684        120 NWTRIPLSEKLPGSPYLITALG-PGTAEM-ATNVGAIYRTTD-GGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNF  195 (334)
T ss_pred             CCeEccCCcCCCCCceEEEEEC-CCccee-eeccceEEEECC-CCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceE
Confidence            222211   0111122222222 222333 333444433221 222211111  124578899999887766665 4555


Q ss_pred             EEE-ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470          376 RLW-DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       376 ~i~-d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      ..- | ..++.-..........++++.+.+++..++++ ..|.+.+-....+........+.......+..+.+.|++..
T Consensus       196 ~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~  273 (334)
T PRK13684        196 YSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI  273 (334)
T ss_pred             EEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence            432 2 22333333333444689999999999877765 45655432233333322222111111122344778888876


Q ss_pred             EEEEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          455 VAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +++| .+|.|. ...+.++......   .-....+.+.|..++..++ .+..|.|..|+
T Consensus       274 ~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        274 WAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             EEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            6655 467554 4445555444332   1223577888877666555 55677876653

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.23  E-value=0.0018  Score=54.31  Aligned_cols=103  Identities=18%  Similarity=0.268  Sum_probs=65.6

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcce-ecccccccce-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC-CceE
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSV-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT-DKVC  313 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~  313 (510)
                      +..+++|+.+|.|.+|+.+..... ..+..-...| ..+.-..++.+..+++.+|.|+.|++..++.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            457899999999999998732211 1111112222 223334455678889999999999999888887777777 4444


Q ss_pred             EEEEecCCCCEEEEE--eCCCcEEEEECC
Q 010470          314 AVDVSKISSRHVVSA--AYDRTLKVWDLH  340 (510)
Q Consensus       314 ~i~~~~~~~~~l~s~--~~dg~i~iwd~~  340 (510)
                      ...++. .+.++.++  |.|..++.|++.
T Consensus       150 ~~ivv~-sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVG-SDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEec-CCceEEeeccccchhhhhcchh
Confidence            444443 44555555  556666666654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.22  E-value=0.21  Score=47.70  Aligned_cols=196  Identities=15%  Similarity=0.100  Sum_probs=116.9

Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCcceeccccc--ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC-Cc
Q 010470          235 YNSARLISGGQDKSIKLWDTNTGSLSSTLYGC--LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT-DK  311 (510)
Q Consensus       235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~  311 (510)
                      .+| .++.+..+|.|.-.|..++..+.....-  ...+.+-.+..+|+ +++++.++.++.+|..+|..+....... ..
T Consensus        67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~  144 (370)
T COG1520          67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY  144 (370)
T ss_pred             eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence            344 5555577888888898888865433222  12233333333565 8888888999999988999888887555 11


Q ss_pred             eEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc----eeEEEEcCCCCEEEEecC--CCcEEEEECCCCce
Q 010470          312 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHI--DGNLRLWDIQTGKL  385 (510)
Q Consensus       312 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~  385 (510)
                      +..-.+.  ....++.++.+|.+...|..+|...........    +..-.. .....++.+..  ++.+.-+|..+|..
T Consensus       145 ~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~  221 (370)
T COG1520         145 YASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTL  221 (370)
T ss_pred             EecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcE
Confidence            1111111  234455555789999999999988777554331    111111 12334455555  66788888888887


Q ss_pred             eeeecccccccEEE---EEEcCC-----CCEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470          386 LSEVAAHSLAAVTS---ISLSRS-----GNIILTSGRDNLHNLFDIRSLEVCGSLRAT  435 (510)
Q Consensus       386 ~~~~~~~~~~~i~~---i~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  435 (510)
                      ..............   ......     +..++.++.++.+..+|..+++.+..+...
T Consensus       222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            77643221111110   111111     223356667788888999999888877765

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=97.21  E-value=0.11  Score=44.18  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=40.4

Q ss_pred             ccchhhHhhcCccccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           28 AHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIR  104 (510)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~  104 (510)
                      +|..+-..||.-.    ..-.+.+..|..++.++++........+.....+.+.+..-++..+.++.+|+..+..+.
T Consensus        10 af~~iK~YYndIT----~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~   82 (201)
T PF13851_consen   10 AFQEIKNYYNDIT----LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE   82 (201)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555554222    234456667777777776666666555555555555555555555555555555554433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.18  E-value=0.038  Score=53.20  Aligned_cols=151  Identities=11%  Similarity=0.128  Sum_probs=91.2

Q ss_pred             cccceeEEEEecCCCEEEEEe---CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC---CCCEEEEEeCCCcEEEEEC
Q 010470          266 CLGSVLDLAITHDNRSVIAAS---SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI---SSRHVVSAAYDRTLKVWDL  339 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~l~s~~~dg~i~iwd~  339 (510)
                      .-.++..++|. ||+.++-..   .+|.+++=|   .+.+    +.-..|.++.|.|.   +...+++......|.||.+
T Consensus        18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             hhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            34578899998 565544332   234433322   2223    33456899999985   2334555566889999987


Q ss_pred             C-----CCeEeeeee--e--cCc--eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCE
Q 010470          340 H-----KGYCVNTII--F--HSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI  408 (510)
Q Consensus       340 ~-----~~~~~~~~~--~--~~~--i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  408 (510)
                      .     .++.+....  .  .-+  ...+.|+|....|++-+....-.+++++.............+.|.|.+|.+||+.
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR  169 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE
Confidence            5     222222211  1  111  4678899999988876655444566665443333333333389999999999998


Q ss_pred             EEEEecC-CcEEEEEcC
Q 010470          409 ILTSGRD-NLHNLFDIR  424 (510)
Q Consensus       409 l~~~~~d-~~i~i~d~~  424 (510)
                      |+++-.. =.-++||-.
T Consensus       170 LVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEeCCeEEEEEecCc
Confidence            8776444 356778753

>PRK11637 AmiB activator; Provisional

Probab=97.15  E-value=0.14  Score=49.87  Aligned_cols=77  Identities=13%  Similarity=0.219  Sum_probs=47.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           45 SEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKAL  121 (510)
Q Consensus        45 ~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~  121 (510)
                      ..+++++..+++++.+..+.+.+...++......+..+...+.+.+..|..++.++.+++.++.+++.+++.....+
T Consensus        50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36677777777777777777766666666666665555555555555555555555555555555555555444443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.13  E-value=0.26  Score=47.05  Aligned_cols=196  Identities=14%  Similarity=0.165  Sum_probs=113.2

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCeeEeecCCC--CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC--cee
Q 010470          280 RSVIAASSSNNLYVWDVNSGRVRHTLTGHT--DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS--NCN  355 (510)
Q Consensus       280 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~i~  355 (510)
                      ..++++..+|.|.-.|..++..+.....-.  ..+.+-.+..  ...++.++.+|.+..+|..+|..+.......  .+.
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~--~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS--DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe--CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            346666888889999998888665443221  2222222222  3448888889999999999999888887776  111


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc--ccEEEEEEcCCCCEEEEEec--CCcEEEEEcCCceeeeE
Q 010470          356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL--AAVTSISLSRSGNIILTSGR--DNLHNLFDIRSLEVCGS  431 (510)
Q Consensus       356 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~  431 (510)
                      .-.+-.++ .++.++.+|.+...|..+|...........  ..+..-.. .....++.+..  ++.+.-+|..++.....
T Consensus       147 ~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         147 SPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             cCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeee
Confidence            22222233 444455789999999988988776554320  11111111 12334444444  56677777777776655


Q ss_pred             eecCCCeeecCc------eeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc
Q 010470          432 LRATGNRVASNW------SRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE  480 (510)
Q Consensus       432 ~~~~~~~~~~~~------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  480 (510)
                      ............      ..-.+.-++ -++.++.+|.+...+..+++.+..+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         225 QKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEec
Confidence            432221111100      000111122 235666778888889898988877765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.09  Score=52.20  Aligned_cols=200  Identities=11%  Similarity=0.124  Sum_probs=105.5

Q ss_pred             cccceEEEEEecCCCE-EEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee
Q 010470          224 HEGGCASILFEYNSAR-LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR  302 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  302 (510)
                      ..|++.++..+|..-. ++  +.--.|+||+.. |..+..+.-..+.+..+.|+.+. -|++...+|++++|++. |..+
T Consensus        42 p~gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~i  116 (829)
T KOG2280|consen   42 PFGGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFI  116 (829)
T ss_pred             ccCCceEEEeccccccccc--ccceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhh
Confidence            4455666666663211 11  334568999876 66666665555588899999654 57788899999999975 3333


Q ss_pred             Eee----cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-c---CceeEEEEcCCCC--E-EE-Eec
Q 010470          303 HTL----TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-H---SNCNALAFSMDGQ--T-IF-SGH  370 (510)
Q Consensus       303 ~~~----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~---~~i~~i~~~~~~~--~-l~-~~~  370 (510)
                      ...    ......|..+.+.. +|-.+++.  +|.+.+-+-........... +   .+.+|..+.+++.  . ++ +.-
T Consensus       117 e~~svg~e~~~~~I~ec~~f~-~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~  193 (829)
T KOG2280|consen  117 ESNSVGFESQMSDIVECRFFH-NGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV  193 (829)
T ss_pred             cccccccccccCceeEEEEec-CceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech
Confidence            221    12233344444444 34333333  44444433222212222221 1   1123333333322  1 11 110


Q ss_pred             CCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470          371 IDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       371 ~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  433 (510)
                      ..| ..++-...+ .....+.... +.+.-+.+||+.++|+.-...|.|.+-+....+....+.
T Consensus       194 ~v~-~~~~q~~~~~~q~~~~~~~~-~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  194 AVG-LHICQVEESRVQLHALSWPN-SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             hhh-hcccceecccccccccCCCC-ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            111 011111111 1122222222 678889999999999999999999998887666555554

>PHA02790 Kelch-like protein; Provisional

Probab=97.10  E-value=0.051  Score=53.77  Aligned_cols=180  Identities=9%  Similarity=-0.002  Sum_probs=88.2

Q ss_pred             cCCCEEEEeeCCC-----eEEEEeCCCCccee--cccccccceeEEEEecCCCEEEEEeCC--CeEEEEEcCCCCeeEee
Q 010470          235 YNSARLISGGQDK-----SIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS--NNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       235 ~~~~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~  305 (510)
                      .++..+++||.++     .+..||..++....  .+....... +++ .-++...++|+.+  ..+..||..+++-... 
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~-  346 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNM-  346 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEEC-
Confidence            3455667777543     47778887654322  221111111 122 2367777777753  3678888765543221 


Q ss_pred             cCCCCceE--EEEEecCCCCEEEEEeCCC---cEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          306 TGHTDKVC--AVDVSKISSRHVVSAAYDR---TLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       306 ~~~~~~v~--~i~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                      ..-..+..  ++..  .++.+.+.||.++   .+..||..++.....-....+  -.+++ ..+|...+.|   |.+.+|
T Consensus       347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~y  420 (480)
T PHA02790        347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFY  420 (480)
T ss_pred             CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEe
Confidence            11111111  2222  1577777777653   477899887654432222211  11222 2356666666   357889


Q ss_pred             ECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCC
Q 010470          379 DIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRS  425 (510)
Q Consensus       379 d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~  425 (510)
                      |..+++-...-.... ......+.  -+|.+.++|+.+     ..+..||..+
T Consensus       421 dp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        421 CESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             cCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence            987654322111111 01222222  256777777654     2344555543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.09  E-value=0.31  Score=47.27  Aligned_cols=146  Identities=11%  Similarity=0.120  Sum_probs=86.0

Q ss_pred             cceEEEEEecCCCEE-EEee--CCCeEEEEeCCCCcceecccccccceeEEEEecC----CCEEEEEeCCCeEEEEEcC-
Q 010470          226 GGCASILFEYNSARL-ISGG--QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD----NRSVIAASSSNNLYVWDVN-  297 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l-~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~-  297 (510)
                      .+|..++|. ||+.+ .|.-  .+|.+++=|   .+    ..|.-..|..++|.|-    ...+++......|.||-+. 
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~----viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SK----VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---cc----EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            368889997 55543 3322  233333221   11    2234456889999885    3467777788899999885 


Q ss_pred             ----CCCeeEeecCCC---Cc--eEEEEEecCCCCEEEEEeCCCcEEEEECCC--CeEeeeeeecCceeEEEEcCCCCEE
Q 010470          298 ----SGRVRHTLTGHT---DK--VCAVDVSKISSRHVVSAAYDRTLKVWDLHK--GYCVNTIIFHSNCNALAFSMDGQTI  366 (510)
Q Consensus       298 ----~~~~~~~~~~~~---~~--v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~i~~i~~~~~~~~l  366 (510)
                          .++.+..-..+-   -+  ..++.|+| ....++.-.....-.+++++.  .+....+...+-|.|.||.+||+.|
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence                233322222111   11  24567999 666666655444445555543  3344445556679999999999988


Q ss_pred             EEecC-CCcEEEEEC
Q 010470          367 FSGHI-DGNLRLWDI  380 (510)
Q Consensus       367 ~~~~~-dg~i~i~d~  380 (510)
                      +++-. .=.-++||-
T Consensus       171 VVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDS  185 (671)
T ss_pred             EEEeCCeEEEEEecC
Confidence            76532 334678874

>PHA02790 Kelch-like protein; Provisional

Probab=97.07  E-value=0.05  Score=53.80  Aligned_cols=183  Identities=9%  Similarity=-0.040  Sum_probs=86.9

Q ss_pred             CCCEEEEEeCC-----CeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCC--CcEEEEECCCCeEeeee
Q 010470          278 DNRSVIAASSS-----NNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCVNTI  348 (510)
Q Consensus       278 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~  348 (510)
                      ++..+++|+.+     ..+..||..++.....  +....... ++.. - ++.+.+.||.+  ..+..||..++.....-
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            45555666643     2577788776553221  11111111 2222 2 56777777754  46888988766543322


Q ss_pred             eecCce-eEEEEcCCCCEEEEecCCC---cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          349 IFHSNC-NALAFSMDGQTIFSGHIDG---NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       349 ~~~~~i-~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      ..+.+. ......-+|...+.|+.++   .+..||..+..-...-.......-.++ ..-+|.+.+.|+   .+.+||..
T Consensus       348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~-~~~~~~IYv~GG---~~e~ydp~  423 (480)
T PHA02790        348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCA-LVFGRRLFLVGR---NAEFYCES  423 (480)
T ss_pred             CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceE-EEECCEEEEECC---ceEEecCC
Confidence            222211 1111223677777777553   477888876543221111110111112 123455556553   56788887


Q ss_pred             CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCC
Q 010470          425 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISK  471 (510)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~  471 (510)
                      +.+-...-.........    -+...+|+..++|+.+     .+|.+||..+
T Consensus       424 ~~~W~~~~~m~~~r~~~----~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        424 SNTWTLIDDPIYPRDNP----ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CCcEeEcCCCCCCcccc----EEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence            65433221111111111    1223467777777754     2455666544

>smart00787 Spc7 Spc7 kinetochore protein

Probab=97.06  E-value=0.24  Score=45.32  Aligned_cols=18  Identities=22%  Similarity=0.084  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 010470            7 AREAIKHALKALRKRHLV   24 (510)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~   24 (510)
                      +-+.+.++|+.|+++=..
T Consensus        64 ~LElY~~sC~EL~~~I~e   81 (312)
T smart00787       64 LLELYQFSCKELKKYISE   81 (312)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            456778899999987633

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.06  E-value=0.2  Score=51.28  Aligned_cols=68  Identities=13%  Similarity=0.049  Sum_probs=36.2

Q ss_pred             HHHHHHhhhhhhhcccchhhHhhcCccccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHH
Q 010470           14 ALKALRKRHLVEEGAHAPAIIALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSS   82 (510)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~   82 (510)
                      .++.||.-...-++.-.++-...+.... ....+...+..++.+..+++.+...+.......++....+
T Consensus       426 dvkkLraeLq~~Rq~E~ELRsqis~l~~-~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L  493 (697)
T PF09726_consen  426 DVKKLRAELQSSRQSEQELRSQISSLTN-NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL  493 (697)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555665555555555555555443332 2235566666666666666665555555444444443333

; GO: 0016021 integral to membrane

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.05  E-value=0.1  Score=40.91  Aligned_cols=69  Identities=26%  Similarity=0.294  Sum_probs=30.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTEL  114 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l  114 (510)
                      .+++++..|+++|......+..+.-...........+...++.....+..+..++..++.+...|...+
T Consensus        21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l   89 (140)
T PF10473_consen   21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL   89 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777766554444443333333333333333333333333333333333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=97.04  E-value=0.059  Score=45.87  Aligned_cols=65  Identities=22%  Similarity=0.326  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           47 WKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLK  111 (510)
Q Consensus        47 ~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~  111 (510)
                      ..+++..+++++.+..+...+....+..............+..+..+..++..+..+.++..++.
T Consensus        86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444433333333333333333222233333333333333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=97.03  E-value=0.19  Score=43.72  Aligned_cols=196  Identities=15%  Similarity=0.089  Sum_probs=127.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI  348 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  348 (510)
                      ....++-.|||...+++...+.|--.|..+|+....--+.......|..-| ++..-++-+.. -|.-+|.++.... .+
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt-~f  139 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVT-RF  139 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceE-Ee
Confidence            345678889999999999888888889999987766555666667777777 55544443322 5555666554322 22


Q ss_pred             ee-----cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          349 IF-----HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       349 ~~-----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      ..     ..+.+...|.+.|+.-+++.. |.---.|.. ...+..+..........|+..|+|...++.-.++.|-..|.
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp  217 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP  217 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence            21     245788999999998888763 222222322 22344455444467888999999999999888888888887


Q ss_pred             CCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          424 RSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      .++. ...+...... ......+..+|.|..-++....+.++.||..+
T Consensus       218 ~~~~-aev~p~P~~~-~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         218 FAGH-AEVVPQPNAL-KAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             ccCC-cceecCCCcc-cccccccccCccCcEEEeccCCceeeEeCccc
Confidence            7662 2223222221 11122345577888888877788888888654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.0076  Score=62.00  Aligned_cols=142  Identities=14%  Similarity=0.158  Sum_probs=93.9

Q ss_pred             ceeEEEEecCCCEEEEEe--CCCeEEEEEcCCCCee-----Eeec------CCCCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470          269 SVLDLAITHDNRSVIAAS--SSNNLYVWDVNSGRVR-----HTLT------GHTDKVCAVDVSKISSRHVVSAAYDRTLK  335 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~-----~~~~------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~  335 (510)
                      ++..+...+|+...++..  ++-.|..||+.+-..-     .-+.      .....+.++.|+|.-....+.+..|+.|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            455566667766555443  4448899998753211     1111      12234567888886566677788899999


Q ss_pred             EEECCCC-eEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc---ccccEEEEEEcCCCCEEEE
Q 010470          336 VWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLAAVTSISLSRSGNIILT  411 (510)
Q Consensus       336 iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~  411 (510)
                      +..+.-. ..+..+......++++|+|.|+.+++|...|++.-|.. .+.....+...   ....|.+|+|-....++++
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            9877532 22333455566899999999999999999999998875 34433333322   2367999999877666655

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.00  E-value=0.34  Score=46.12  Aligned_cols=143  Identities=14%  Similarity=0.133  Sum_probs=82.4

Q ss_pred             cceEEEEEecCCCEEEEee-----------CCC-eEEEEeCCC--Ccc--eecccccccceeEEEEecCCCEEEEEeCCC
Q 010470          226 GGCASILFEYNSARLISGG-----------QDK-SIKLWDTNT--GSL--SSTLYGCLGSVLDLAITHDNRSVIAASSSN  289 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  289 (510)
                      .....|+|+++|+++++-.           ..+ .|.+++-.+  |+.  ...+.........+++.+++  |++++.. 
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-
Confidence            3467899999998877753           223 777776432  332  22333334456889999888  4445444 


Q ss_pred             eEEEE-EcCCC-----Ce---eEeecC----CCCceEEEEEecCCCCEEEEEeC-------------------CCcEEEE
Q 010470          290 NLYVW-DVNSG-----RV---RHTLTG----HTDKVCAVDVSKISSRHVVSAAY-------------------DRTLKVW  337 (510)
Q Consensus       290 ~i~iw-d~~~~-----~~---~~~~~~----~~~~v~~i~~~~~~~~~l~s~~~-------------------dg~i~iw  337 (510)
                      .|..| |....     +.   ...+..    +......+.|.| ++.+.++.+.                   .|.|.-+
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            34434 44321     21   112222    124467889988 6666555442                   1456666


Q ss_pred             ECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC
Q 010470          338 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID  372 (510)
Q Consensus       338 d~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  372 (510)
                      |..++..............++|+|+|.++++-..+
T Consensus       170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       170 NPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence            76655433222333457899999999988765543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=96.97  E-value=0.065  Score=53.24  Aligned_cols=27  Identities=11%  Similarity=0.076  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccchhhH
Q 010470            8 REAIKHALKALRKRHLVEEGAHAPAII   34 (510)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   34 (510)
                      .-+.|---.+||||+|+-.+.+.+.--
T Consensus       389 ~QplrsENaqLrRrLrilnqqlreqe~  415 (861)
T PF15254_consen  389 MQPLRSENAQLRRRLRILNQQLREQEK  415 (861)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            334444556788888877766666433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.96  E-value=0.089  Score=46.97  Aligned_cols=146  Identities=17%  Similarity=0.130  Sum_probs=87.7

Q ss_pred             ceeEEEEcCCCCEEEEec---CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEE-cCCcee
Q 010470          353 NCNALAFSMDGQTIFSGH---IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD-IRSLEV  428 (510)
Q Consensus       353 ~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d-~~~~~~  428 (510)
                      .+.+.+++++|..++...   ....++++.  .+.........  ..+....|++++...++...+....++. ...+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            588999999999877554   333455554  33333333222  4788889999988777777666666663 222222


Q ss_pred             e-eEeecCCCeeecCceeEEEcCCCCEEEEEc---CCCeEEEEeCC---Cc------ceeecccccCcCEEEEEEeCCCC
Q 010470          429 C-GSLRATGNRVASNWSRSCISPDESYVAAGS---ADGSVYIWSIS---KA------DIVRTLKEHTAPVLSCSWSGLGK  495 (510)
Q Consensus       429 ~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~~~~~~~~~  495 (510)
                      . ........  ...+..+.+||||..++...   .++.|++--+.   .+      .+..........+.+++|.+++.
T Consensus       101 ~~~~v~~~~~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  101 EPVEVDWPGL--RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             eeEEeccccc--CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            1 11111111  11456699999999877655   35777777543   23      11112222346789999999998


Q ss_pred             cEEEeeCCC
Q 010470          496 PLASADKNG  504 (510)
Q Consensus       496 ~l~s~~~dg  504 (510)
                      +++.+...+
T Consensus       179 L~V~~~~~~  187 (253)
T PF10647_consen  179 LVVLGRSAG  187 (253)
T ss_pred             EEEEeCCCC
Confidence            776655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.92  E-value=0.19  Score=48.42  Aligned_cols=270  Identities=12%  Similarity=0.088  Sum_probs=136.0

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc-cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL-GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      ..+|.++.++..| .+..|+.|| +..||..+++.+..-.... ..|..+..+-.+. +.+|+.+| |++.+....+...
T Consensus       164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn  239 (671)
T COG3292         164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASN  239 (671)
T ss_pred             CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccc
Confidence            4578888888877 566777776 6777877777665544433 5666666665555 66676665 7777766532221


Q ss_pred             eecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470          304 TLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSGHIDGNLRLWD  379 (510)
Q Consensus       304 ~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~d  379 (510)
                      -... ....|..+.-.  ....+..|+.+|..+.--.+.+-.......+   +.++++..+.+|. +.+++.+|.+++-+
T Consensus       240 ~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~  316 (671)
T COG3292         240 WGPMLPSGNILLLVQD--AQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLT  316 (671)
T ss_pred             cCCCCcchheeeeecc--cCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEec
Confidence            1111 22334333322  3455666766654433322222222222222   3466677666776 56677666665543


Q ss_pred             CCCCceeeeecccccccEEEEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEE
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA  457 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  457 (510)
                      . .......+.......+......|  .+..+-.....|.+.+-+-.++..+.....-..   ..++.+++..+| .+..
T Consensus       317 a-~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg---~nit~~~~d~~g-~lWl  391 (671)
T COG3292         317 A-DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRG---MNITTTLEDSRG-RLWL  391 (671)
T ss_pred             c-hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccc---cccchhhhccCC-cEEE
Confidence            2 22221122221111222222222  111111122222333344444444433221111   123335666644 4455


Q ss_pred             EcCCCeEEEEeCCC-cceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470          458 GSADGSVYIWSISK-ADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVC  507 (510)
Q Consensus       458 ~~~dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~  507 (510)
                      |+...-+.-|+..+ +-.+....+ ..++|..+.=.|+++ |..|+.+|.++
T Consensus       392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk  442 (671)
T COG3292         392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK  442 (671)
T ss_pred             EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence            55553377777666 333333333 466788888888887 88888888765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.019  Score=56.77  Aligned_cols=180  Identities=8%  Similarity=0.048  Sum_probs=94.4

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec-c--cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST-L--YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG  299 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  299 (510)
                      -..+.+..+.|+.+. .|++...+|++.||++........ .  ......|..+.|..+|  +++-..+|.+.+-+-...
T Consensus        81 w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~  157 (829)
T KOG2280|consen   81 WKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEE  157 (829)
T ss_pred             hcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCc
Confidence            344588999999765 666778899999999863322110 1  2223345556665555  344444455544432222


Q ss_pred             CeeEeecC---CCCceEEEEEecCCC--CEEEEEe-CCC-cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC
Q 010470          300 RVRHTLTG---HTDKVCAVDVSKISS--RHVVSAA-YDR-TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID  372 (510)
Q Consensus       300 ~~~~~~~~---~~~~v~~i~~~~~~~--~~l~s~~-~dg-~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  372 (510)
                      ....+++.   ...+-.|....+...  ..++-.. ..+ .+..-+....+.......++.+.-+.++|+.++|+.-+..
T Consensus       158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~  237 (829)
T KOG2280|consen  158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTET  237 (829)
T ss_pred             chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecC
Confidence            12222221   111212333222111  1111111 000 0111111112222222224668889999999999999999


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcCC
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS  405 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~  405 (510)
                      |.|.+-+....+....+......+...++|..+
T Consensus       238 G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn  270 (829)
T KOG2280|consen  238 GKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN  270 (829)
T ss_pred             CcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence            999999988777777776443345556666443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.88  E-value=0.052  Score=51.66  Aligned_cols=148  Identities=14%  Similarity=0.115  Sum_probs=80.8

Q ss_pred             CceeEEEEcCCCCEEEEec-----------CCC-cEEEEECCC--Cce--eeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470          352 SNCNALAFSMDGQTIFSGH-----------IDG-NLRLWDIQT--GKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRD  415 (510)
Q Consensus       352 ~~i~~i~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  415 (510)
                      ..+..++|.++|+++++-.           ..+ .|.+++-.+  |+.  ...+...- .....+++.++|  |++++..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-SMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-CCccceeEecCC--EEEeCCC
Confidence            4577899999999877643           223 787776543  332  23333222 567889999988  4444444


Q ss_pred             CcEEEEEcCCc-----eeeeE---eecCCCeeecCceeEEEcCCCCEEEEEcCC-------------------CeEEEEe
Q 010470          416 NLHNLFDIRSL-----EVCGS---LRATGNRVASNWSRSCISPDESYVAAGSAD-------------------GSVYIWS  468 (510)
Q Consensus       416 ~~i~i~d~~~~-----~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-------------------g~i~iwd  468 (510)
                      ...++.|....     +....   +.............+.+.|||.+.++-+..                   |.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            33334344321     11111   211101012224458899999876654421                   4566666


Q ss_pred             CCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          469 ISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       469 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      ..+++....-.++ .....++|+|+|.++++-..+
T Consensus       171 pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       171 PDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence            5554432222333 345789999999877764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.071  Score=44.26  Aligned_cols=178  Identities=12%  Similarity=0.116  Sum_probs=102.3

Q ss_pred             CCCEEEEEe--CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCcee
Q 010470          278 DNRSVIAAS--SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN  355 (510)
Q Consensus       278 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~  355 (510)
                      +|.++.+.+  ....|++||+.+++.+..-+-....+..=-.....+.+..-.-.+|.-..+|.++-+++..+...+.-.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            455555555  345899999999987765543222222211111123333344458889999999988888888887777


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec----ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE
Q 010470          356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA----AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS  431 (510)
Q Consensus       356 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  431 (510)
                      .++.  |+..|+.++...+++.-|.++.....++.    +.....++-+.|- +|...+-.-.+..|...|..+++.+..
T Consensus       135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~w  211 (262)
T COG3823         135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAW  211 (262)
T ss_pred             eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEE
Confidence            7765  56667777666788888876654333322    2111223333332 455555555555666777777777666


Q ss_pred             eecCCCe--------eecCceeEEEcCCCC-EEEEE
Q 010470          432 LRATGNR--------VASNWSRSCISPDES-YVAAG  458 (510)
Q Consensus       432 ~~~~~~~--------~~~~~~~~~~s~~~~-~l~~~  458 (510)
                      +...+-.        .....+.+++.|++. ++++|
T Consensus       212 idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         212 IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            5432211        111234578888764 44444

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.83  E-value=0.28  Score=47.79  Aligned_cols=45  Identities=11%  Similarity=0.203  Sum_probs=21.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKE   90 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~   90 (510)
                      -.+..+..++..|++..+.+..+...+.....++..++..+.+.+
T Consensus        89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~  133 (546)
T KOG0977|consen   89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAE  133 (546)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            344445555555555555555554444444444444444444443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.82  E-value=0.38  Score=43.81  Aligned_cols=224  Identities=13%  Similarity=0.149  Sum_probs=104.4

Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee--cCC---CCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL--TGH---TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~---~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      ..++.+|.|..+..-+++| ..+.|.- ..+.|+.=...  ...   .-...++.|..  ...+++|. .+ +.+.....
T Consensus        16 ~~~l~dV~F~d~~~G~~VG-~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG~-~g-~ll~T~Dg   89 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVG-AYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVGE-PG-LLLHTTDG   89 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEE-TTTEEEE-ESSTTSS-EE-----S-----EEEEEEEET--TEEEEEEE-TT-EEEEESST
T ss_pred             CCceEEEEEecCCEEEEEe-cCCEEEE-ECCCCccccccccCCCccceeeEEEEEecC--CceEEEcC-Cc-eEEEecCC
Confidence            4578899998555555554 4454422 22333321111  111   12356677754  34444443 44 34444444


Q ss_pred             CeEeeeeee----cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCc
Q 010470          342 GYCVNTIIF----HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL  417 (510)
Q Consensus       342 ~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  417 (510)
                      |..-..+..    +.....+....++..++++ ..|.|+.- ...|+.-..+.....+.+..+..+++|.+++++.....
T Consensus        90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~  167 (302)
T PF14870_consen   90 GKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF  167 (302)
T ss_dssp             TSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred             CCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence            443333321    2233444444444444444 44655432 23454444444444478999999999999999987777


Q ss_pred             EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe-CCCccee----ecccccCcCEEEEEEeC
Q 010470          418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS-ISKADIV----RTLKEHTAPVLSCSWSG  492 (510)
Q Consensus       418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~----~~~~~~~~~v~~~~~~~  492 (510)
                      ..-||.-...-    ..+.......+..+.|+|++.+.+++ ..|.|++=+ ....+..    ..+....-.+.+++|.+
T Consensus       168 ~~s~~~G~~~w----~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~  242 (302)
T PF14870_consen  168 YSSWDPGQTTW----QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP  242 (302)
T ss_dssp             EEEE-TT-SS-----EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS
T ss_pred             EEEecCCCccc----eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC
Confidence            77777543111    11222222344558999998887755 678788776 2222221    12222334589999999


Q ss_pred             CCCcEEEeeCC
Q 010470          493 LGKPLASADKN  503 (510)
Q Consensus       493 ~~~~l~s~~~d  503 (510)
                      ++...++|+..
T Consensus       243 ~~~~wa~gg~G  253 (302)
T PF14870_consen  243 PNEIWAVGGSG  253 (302)
T ss_dssp             SS-EEEEESTT
T ss_pred             CCCEEEEeCCc
Confidence            87777766544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.81  E-value=0.56  Score=48.37  Aligned_cols=94  Identities=12%  Similarity=0.125  Sum_probs=52.4

Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      .-.|..+.++|+|++++..|..|. .|-.+.. ......+.+....+.|-.+ |.+..++ ..+                
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~-~v~~~~~-~~~----------------  144 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTV-PVDERFF-TSN----------------  144 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEE-Eechhhc-cCC----------------
Confidence            346788999999999998888664 4444432 1111223322333333222 1122222 111                


Q ss_pred             eeeeecCceeEEEEcCC---CCEEEEecCCCcEEEEECCCC
Q 010470          346 NTIIFHSNCNALAFSMD---GQTIFSGHIDGNLRLWDIQTG  383 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~  383 (510)
                          ....+..+.|+|.   +.+|++-+.|+.+++||+...
T Consensus       145 ----~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  145 ----SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             ----CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence                1123566778774   577888788888888888654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.80  E-value=0.043  Score=46.54  Aligned_cols=24  Identities=8%  Similarity=0.266  Sum_probs=15.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhhh
Q 010470           45 SEWKEKADNLETELQQCYKAQSRL   68 (510)
Q Consensus        45 ~~~~~~~~~l~~el~~~~k~~~~~   68 (510)
                      +.+..++..++++++++.....+.
T Consensus        89 p~~~~rlp~le~el~~l~~~l~~~  112 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLTDKLNNI  112 (206)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677777777777665444444

>PRK09039 hypothetical protein; Validated

Probab=96.80  E-value=0.15  Score=47.50  Aligned_cols=90  Identities=16%  Similarity=0.193  Sum_probs=39.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV  125 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~  125 (510)
                      .+++++..++..+..+...+.++...+.......       .+.+.....+..++...+.+..+...++..+.++++.|+
T Consensus        78 ~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~-------~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr  150 (343)
T PRK09039         78 DLQDSVANLRASLSAAEAERSRLQALLAELAGAG-------AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALR  150 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5666666666666665555555544333211111       122333333334444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010470          126 SENQQIRAQLEEMTMKA  142 (510)
Q Consensus       126 ~e~~~l~~~~~~~~~~~  142 (510)
                      .++..+..++...+.+.
T Consensus       151 ~Qla~le~~L~~ae~~~  167 (343)
T PRK09039        151 RQLAALEAALDASEKRD  167 (343)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.77  E-value=0.0056  Score=37.80  Aligned_cols=32  Identities=6%  Similarity=0.086  Sum_probs=28.8

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGS  258 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  258 (510)
                      ..|.+++|+|..++||.|+.+|.|.+|.+ +++
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            46999999999999999999999999998 444

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.67  E-value=0.44  Score=42.59  Aligned_cols=148  Identities=19%  Similarity=0.161  Sum_probs=86.0

Q ss_pred             ceEEEEEecCCCCEEEEEe---CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEE-CCCCce-
Q 010470          311 KVCAVDVSKISSRHVVSAA---YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWD-IQTGKL-  385 (510)
Q Consensus       311 ~v~~i~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d-~~~~~~-  385 (510)
                      .+.+.++++ ++..++...   ....+.++..  +...........+..-.|++++...++...+....++. ...+.. 
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678889999 555544433   3345555544  33333333444688889999988777766666666663 333322 


Q ss_pred             eeeecccccc-cEEEEEEcCCCCEEEEEe---cCCcEEEEEcC---CceeeeEee---cCCCeeecCceeEEEcCCCCEE
Q 010470          386 LSEVAAHSLA-AVTSISLSRSGNIILTSG---RDNLHNLFDIR---SLEVCGSLR---ATGNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       386 ~~~~~~~~~~-~i~~i~~~~~~~~l~~~~---~d~~i~i~d~~---~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l  455 (510)
                      ...+...... .|..+.+||||..++...   .++.|.+--+.   .+ ....+.   .........+..+.|.+++.++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g-~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG-VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-CcceeccceEecccccCcceeeeecCCCEEE
Confidence            2222222212 899999999999877665   34667666543   22 011111   1111112345568999999988


Q ss_pred             EEEcCCC
Q 010470          456 AAGSADG  462 (510)
Q Consensus       456 ~~~~~dg  462 (510)
                      +.+...+
T Consensus       181 V~~~~~~  187 (253)
T PF10647_consen  181 VLGRSAG  187 (253)
T ss_pred             EEeCCCC
Confidence            8776644

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.61  E-value=0.37  Score=40.98  Aligned_cols=47  Identities=21%  Similarity=0.275  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA  142 (510)
Q Consensus        96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~  142 (510)
                      ++..+..++.++..|.-+.+.+.+....+..|++.+...++..-...
T Consensus        91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev  137 (201)
T PF13851_consen   91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV  137 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666666666666666666666666665555443333

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.073  Score=49.58  Aligned_cols=144  Identities=11%  Similarity=0.107  Sum_probs=89.7

Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEECCC--CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE
Q 010470          354 CNALAFSMDGQTIFSGHIDGNLRLWDIQT--GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS  431 (510)
Q Consensus       354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  431 (510)
                      .+.+-|...++.+++ ...|.+.-|-...  ...+..+.....++|.+|.||+|++.+++--.+..|.+++....+....
T Consensus        25 sngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   25 SNGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             ccceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            345555544444443 3344555555432  3344455555558999999999999999999999999998743333222


Q ss_pred             eecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          432 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       432 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      ...........+-..+|+.+ .-+|..+..| +-+|-+.. ...++..+.|.-.|+-..|.++.+.+.-+
T Consensus       104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            22221222222344677665 5566666566 77776654 34456667788889999999988754433

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.59  E-value=0.44  Score=41.60  Aligned_cols=237  Identities=11%  Similarity=0.048  Sum_probs=148.9

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee-Eee
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR-HTL  305 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~  305 (510)
                      .-..++-+|||..-+++...|.|--.|..+|+....--+.......|...|||...++-+.. .|.-.|-++.... ..+
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            46678889999999999888889888999998876666667777889999999988776655 4555565555432 122


Q ss_pred             --cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee--cCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470          306 --TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF--HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       306 --~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  381 (510)
                        ...........|.+ .+++-+++.. |.---.|..+ ..+..+..  ....+.||..|+|..-++.-.+..|...|..
T Consensus       142 p~~~a~~nlet~vfD~-~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~  218 (353)
T COG4257         142 PLEHADANLETAVFDP-WGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF  218 (353)
T ss_pred             ccccCCCcccceeeCC-CccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence              22234566677777 6777777652 2211222211 12222222  2347889999999998888778888888887


Q ss_pred             CCceeeeecccc--cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          382 TGKLLSEVAAHS--LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       382 ~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      ++.. ..+....  ...-..+-.+|.|..-++....+.+.-||..... -..+.........  ..+.+...|+.-.+--
T Consensus       219 ~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arp--ys~rVD~~grVW~sea  294 (353)
T COG4257         219 AGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARP--YSMRVDRHGRVWLSEA  294 (353)
T ss_pred             cCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCc--ceeeeccCCcEEeecc
Confidence            7632 2222221  1455667778889988888888899888876543 2333322221111  1134455555544444


Q ss_pred             CCCeEEEEeCCC
Q 010470          460 ADGSVYIWSISK  471 (510)
Q Consensus       460 ~dg~i~iwd~~~  471 (510)
                      ..|.|.-||..+
T Consensus       295 ~agai~rfdpet  306 (353)
T COG4257         295 DAGAIGRFDPET  306 (353)
T ss_pred             ccCceeecCccc
Confidence            455666666544

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=96.55  E-value=0.93  Score=44.81  Aligned_cols=143  Identities=18%  Similarity=0.158  Sum_probs=75.1

Q ss_pred             CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc----eeEEEEcCC
Q 010470          287 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMD  362 (510)
Q Consensus       287 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----i~~i~~~~~  362 (510)
                      ..+...++|. .|..+..+.........+...+ ++.+++..+  +.+..+|+. |+.+........    -..+...|+
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~-nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~n  200 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLP-NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPN  200 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TT
T ss_pred             CCceEEEECC-CccEEEEEccCccccceeeEcC-CCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCC
Confidence            4456777773 4666666543322222244555 566555444  889999985 777666665553    257778899


Q ss_pred             CCEEEEecC-------------CCcEEEEECCCCceeeeeccc--------------------------ccccEEEEEEc
Q 010470          363 GQTIFSGHI-------------DGNLRLWDIQTGKLLSEVAAH--------------------------SLAAVTSISLS  403 (510)
Q Consensus       363 ~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~--------------------------~~~~i~~i~~~  403 (510)
                      |++|+.+..             .-.|..+| .+|+.+..+...                          .-..++++.+.
T Consensus       201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd  279 (477)
T PF05935_consen  201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD  279 (477)
T ss_dssp             S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred             CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence            999887761             11355666 667665543210                          00248899999


Q ss_pred             CCCCEEEEEecC-CcEEEEEcCCceeeeEeecC
Q 010470          404 RSGNIILTSGRD-NLHNLFDIRSLEVCGSLRAT  435 (510)
Q Consensus       404 ~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~  435 (510)
                      +....|+++++. ..|..+|.++++....+..+
T Consensus       280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            955555555554 58888998888887776554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.52  E-value=0.11  Score=33.88  Aligned_cols=59  Identities=22%  Similarity=0.296  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTM  140 (510)
Q Consensus        82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~  140 (510)
                      +...++..-..|+-|+-+++.++++...|..+...+....+.|..|..+++.+-..-++
T Consensus         9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe   67 (79)
T COG3074           9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE   67 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555666666666666666666666665555555555555555554443333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.51  E-value=0.22  Score=44.49  Aligned_cols=98  Identities=15%  Similarity=0.183  Sum_probs=46.1

Q ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           44 GSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESR-----------SSKALLQEKESLITSLQEELTQIRDECSQLKT  112 (510)
Q Consensus        44 ~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~  112 (510)
                      ...|.+++..|+.|...+......+...-....+..+           .....+..+..++....++.....+++..|..
T Consensus       162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls  241 (306)
T PF04849_consen  162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS  241 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478888888888877665554444422211111111           12222233333333333334444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          113 ELEEKIKALELVVSENQQIRAQLEEMTMK  141 (510)
Q Consensus       113 ~l~~~~~~~~~l~~e~~~l~~~~~~~~~~  141 (510)
                      ++-.+.+....+..|.+.+...+......
T Consensus       242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~  270 (306)
T PF04849_consen  242 QIVDLQQRCKQLAAENEELQQHLQASKES  270 (306)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            55555554444455555555544444333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.51  E-value=0.64  Score=47.29  Aligned_cols=65  Identities=23%  Similarity=0.282  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           90 ESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVD  154 (510)
Q Consensus        90 ~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~  154 (510)
                      ++++.+|...++++..+..+++.+.+...+..+.++.|+..+..+++.++..+....+.......
T Consensus       465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~  529 (980)
T KOG0980|consen  465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLA  529 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            33344445555555555555555666666666677777777777777777766555544443333

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.50  E-value=0.17  Score=50.59  Aligned_cols=113  Identities=14%  Similarity=0.176  Sum_probs=74.3

Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEc--CCCCEEEEEecCCcEEEEEcC-------
Q 010470          354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS--RSGNIILTSGRDNLHNLFDIR-------  424 (510)
Q Consensus       354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~d~~i~i~d~~-------  424 (510)
                      +.-+.-+.-++..++.+....+.|||.+.+.....-.....+.|.++.|.  |+|+.+++.|..+.|.+|.-.       
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            45555555666666666667899999988875554443334889999886  688999999999999998542       


Q ss_pred             --CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          425 --SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       425 --~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                        +...+..+.... ....++...+|.++|.+++..+  +.++|+|-
T Consensus       112 ~p~w~~i~~i~i~~-~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISS-HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeec-CCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence              223333333221 1122345588999998776554  35888873

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PLN02153 epithiospecifier protein

Probab=96.48  E-value=0.78  Score=43.25  Aligned_cols=147  Identities=12%  Similarity=0.115  Sum_probs=71.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEeeeeee-----cCc--eeEEEEcCCCCEEEEecCC-----------CcEEE
Q 010470          321 SSRHVVSAAYD-----RTLKVWDLHKGYCVNTIIF-----HSN--CNALAFSMDGQTIFSGHID-----------GNLRL  377 (510)
Q Consensus       321 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~-----~~~--i~~i~~~~~~~~l~~~~~d-----------g~i~i  377 (510)
                      ++.+++.|+.+     ..+.+||+.+......-..     +..  ..+++. .++++++.|+.+           ..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence            46677777753     3578899887654322111     111  122232 356666666643           24778


Q ss_pred             EECCCCceeeeeccc-----ccccEEEEEEcCCCCEEEEEecC-------------CcEEEEEcCCceeeeEeecCCCee
Q 010470          378 WDIQTGKLLSEVAAH-----SLAAVTSISLSRSGNIILTSGRD-------------NLHNLFDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       378 ~d~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~~~~~  439 (510)
                      ||+.+.+-.. +...     ..... +++. -++++++.++.+             +.+.+||+.+.+-...-.....+.
T Consensus       164 yd~~~~~W~~-l~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~  240 (341)
T PLN02153        164 YNIADGKWVQ-LPDPGENFEKRGGA-GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS  240 (341)
T ss_pred             EECCCCeEee-CCCCCCCCCCCCcc-eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence            8987654221 1111     10111 2222 245655555422             468889987654332211100011


Q ss_pred             ecCceeEEEcCCCCEEEEEcCC--------------CeEEEEeCCCc
Q 010470          440 ASNWSRSCISPDESYVAAGSAD--------------GSVYIWSISKA  472 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~  472 (510)
                      .. ....+...++.+++.|+..              ..|..||+.+.
T Consensus       241 ~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        241 AR-SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             Cc-ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            10 0112233457777777742              25788887654

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.45  E-value=0.83  Score=47.93  Aligned_cols=11  Identities=18%  Similarity=0.329  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHH
Q 010470            8 REAIKHALKAL   18 (510)
Q Consensus         8 ~~~~~~~~~~~   18 (510)
                      ...|+.+++.|
T Consensus      1517 ~~~I~e~v~sL 1527 (1758)
T KOG0994|consen 1517 TGEIQERVASL 1527 (1758)
T ss_pred             HHHHHHHHHhc
Confidence            33444444443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.43  E-value=0.9  Score=43.36  Aligned_cols=81  Identities=14%  Similarity=0.205  Sum_probs=57.9

Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCC----------------C--EEEEEecC
Q 010470          354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG----------------N--IILTSGRD  415 (510)
Q Consensus       354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~----------------~--~l~~~~~d  415 (510)
                      +.+++.+|++++.++...-|.|.++|+.++..++.+++.....+.-+.....+                .  +++-.-.-
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR  389 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR  389 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence            78899999999999988889999999999988877776543333322222111                1  23345577


Q ss_pred             CcEEEEEcCCceeeeEeec
Q 010470          416 NLHNLFDIRSLEVCGSLRA  434 (510)
Q Consensus       416 ~~i~i~d~~~~~~~~~~~~  434 (510)
                      |.|.||.++.+..+..+..
T Consensus       390 g~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  390 GILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CeEEEEecCCCCEEEEEEe
Confidence            8999999998877666543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.42  E-value=0.011  Score=36.53  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 010470          350 FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL  385 (510)
Q Consensus       350 ~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~  385 (510)
                      ....|.+++|+|....|+.|+.+|.|.+|.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3456899999999999999999999999998 5543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.41  E-value=0.55  Score=40.63  Aligned_cols=6  Identities=33%  Similarity=0.606  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 010470           55 ETELQQ   60 (510)
Q Consensus        55 ~~el~~   60 (510)
                      +.++..
T Consensus        37 ~~e~e~   42 (239)
T COG1579          37 KAELEA   42 (239)
T ss_pred             HHHHHH
Confidence            333333

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.40  E-value=0.17  Score=34.55  Aligned_cols=52  Identities=25%  Similarity=0.289  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           86 LQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEE  137 (510)
Q Consensus        86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~  137 (510)
                      ++..-..|..|+.+++.++++...|..+-+++..+++.++.++......+..
T Consensus        13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen   13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444555555555544444444444444444444444444443333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.38  E-value=0.46  Score=45.39  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=18.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAE   78 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~   78 (510)
                      .|+++.+.|+.+++.+........+.+.+....
T Consensus        47 ~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~   79 (772)
T KOG0999|consen   47 DLKQQLEELEAEYDLARTELDQTKEALGQYRSQ   79 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666677777776665555555554444443333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.34  E-value=0.74  Score=48.26  Aligned_cols=15  Identities=40%  Similarity=0.826  Sum_probs=8.0

Q ss_pred             EEEcCCCCEEEEecC
Q 010470          357 LAFSMDGQTIFSGHI  371 (510)
Q Consensus       357 i~~~~~~~~l~~~~~  371 (510)
                      .++.+||..++.++.
T Consensus       623 ~aytldg~~~~~~g~  637 (1074)
T KOG0250|consen  623 KAYTLDGRQIFAGGP  637 (1074)
T ss_pred             eeeccCccccccCCC
Confidence            345556665555544

>PRK10115 protease 2; Provisional

Probab=96.33  E-value=1.7  Score=45.27  Aligned_cols=111  Identities=11%  Similarity=-0.025  Sum_probs=65.4

Q ss_pred             cceeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEE
Q 010470          268 GSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVW  337 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iw  337 (510)
                      -.+..+.|+||+++|+.+...     ..|++.|+.+|..+...-....  ..+.|.+++..++++...+     ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            356678899999988876432     3688999988864322211111  4589998444444544322     368888


Q ss_pred             ECCCC--eEeeeeeecCc-ee-EEEEcCCCCEEEEec---CCCcEEEEEC
Q 010470          338 DLHKG--YCVNTIIFHSN-CN-ALAFSMDGQTIFSGH---IDGNLRLWDI  380 (510)
Q Consensus       338 d~~~~--~~~~~~~~~~~-i~-~i~~~~~~~~l~~~~---~dg~i~i~d~  380 (510)
                      ++.++  .-...+..... .. .+..+.++++++..+   .++.+.+|+.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            88877  22233332222 22 333344788766433   3457888885

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.32  E-value=0.54  Score=49.19  Aligned_cols=14  Identities=21%  Similarity=0.444  Sum_probs=6.8

Q ss_pred             EEcCCCCEEEEEec
Q 010470          401 SLSRSGNIILTSGR  414 (510)
Q Consensus       401 ~~~~~~~~l~~~~~  414 (510)
                      +|.+||..+..++.
T Consensus       624 aytldg~~~~~~g~  637 (1074)
T KOG0250|consen  624 AYTLDGRQIFAGGP  637 (1074)
T ss_pred             eeccCccccccCCC
Confidence            44555555444443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.054  Score=56.12  Aligned_cols=143  Identities=12%  Similarity=0.016  Sum_probs=89.3

Q ss_pred             ceeEEEEcCCCCEEEEe--cCCCcEEEEECCCCceee-----eec-----ccccccEEEEEEcCCCC-EEEEEecCCcEE
Q 010470          353 NCNALAFSMDGQTIFSG--HIDGNLRLWDIQTGKLLS-----EVA-----AHSLAAVTSISLSRSGN-IILTSGRDNLHN  419 (510)
Q Consensus       353 ~i~~i~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~-----~~~-----~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~  419 (510)
                      .+..+.+.+|+...++.  +.+-.|+.||+++.....     .+.     ........++.|+|.-. ..+++..|+.|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            35566666777655543  333478999997542211     011     11124566788888643 456677888888


Q ss_pred             EEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc----cCcCEEEEEEeCCCC
Q 010470          420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE----HTAPVLSCSWSGLGK  495 (510)
Q Consensus       420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~  495 (510)
                      +..+.-...    .....+.....++++|+|.|+.+++|..+|++.-|.. ..+....+.+    ....|.+|+|-..-.
T Consensus       182 V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  182 VKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence            876653211    1122344445567999999999999999999998873 3444343332    246799999987766


Q ss_pred             cEEEe
Q 010470          496 PLASA  500 (510)
Q Consensus       496 ~l~s~  500 (510)
                      ++++-
T Consensus       257 flvvy  261 (1405)
T KOG3630|consen  257 FLVVY  261 (1405)
T ss_pred             EEEEe
Confidence            66653

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.31  E-value=1.2  Score=43.52  Aligned_cols=26  Identities=15%  Similarity=0.337  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010470           47 WKEKADNLETELQQCYKAQSRLSEQL   72 (510)
Q Consensus        47 ~~~~~~~l~~el~~~~k~~~~~~~~l   72 (510)
                      ++.++...+++..++.+....+.+++
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~  166 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEV  166 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PLN02153 epithiospecifier protein

Probab=96.30  E-value=1  Score=42.52  Aligned_cols=186  Identities=17%  Similarity=0.179  Sum_probs=89.1

Q ss_pred             CCCEEEEeeCC-------CeEEEEeCCCCcceeccc-c--ccc---ceeEEEEecCCCEEEEEeCC-----CeEEEEEcC
Q 010470          236 NSARLISGGQD-------KSIKLWDTNTGSLSSTLY-G--CLG---SVLDLAITHDNRSVIAASSS-----NNLYVWDVN  297 (510)
Q Consensus       236 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~-~--~~~---~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~  297 (510)
                      ++.+++.|+.+       ..+.+||+.+..-..... +  ...   ....+.+  ++.+++.|+.+     ..+.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            45666777653       257888887654322111 0  000   1112222  46666676643     357888887


Q ss_pred             CCCeeE--eecC---CCCc-eEEEEEecCCCCEEEEEeCC-----------CcEEEEECCCCeEeeeeeec----Cc-ee
Q 010470          298 SGRVRH--TLTG---HTDK-VCAVDVSKISSRHVVSAAYD-----------RTLKVWDLHKGYCVNTIIFH----SN-CN  355 (510)
Q Consensus       298 ~~~~~~--~~~~---~~~~-v~~i~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~----~~-i~  355 (510)
                      +.+-..  .+..   .... -.++...  ++.+++.|+.+           ..+.+||+.+..-...-...    .. -.
T Consensus       110 t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~  187 (341)
T PLN02153        110 KNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA  187 (341)
T ss_pred             CCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc
Confidence            654322  1110   1111 1222222  46677777753           24778898876543321111    11 11


Q ss_pred             EEEEcCCCCEEEEecCC-------------CcEEEEECCCCceeeeecc---cccccEEEEEEcCCCCEEEEEecC----
Q 010470          356 ALAFSMDGQTIFSGHID-------------GNLRLWDIQTGKLLSEVAA---HSLAAVTSISLSRSGNIILTSGRD----  415 (510)
Q Consensus       356 ~i~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d----  415 (510)
                      +++. .++++++.|+.+             ..+.+||+.+.+-...-..   +......++ ...++.+++.|+..    
T Consensus       188 ~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~  265 (341)
T PLN02153        188 GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDL  265 (341)
T ss_pred             eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCcc
Confidence            2222 256666655432             4588899876643321110   110111222 22246677777742    


Q ss_pred             ----------CcEEEEEcCCce
Q 010470          416 ----------NLHNLFDIRSLE  427 (510)
Q Consensus       416 ----------~~i~i~d~~~~~  427 (510)
                                +.+..||+.+..
T Consensus       266 ~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        266 KGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             ccccccccccccEEEEEcCccE
Confidence                      257788887544

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=96.30  E-value=0.96  Score=42.26  Aligned_cols=106  Identities=10%  Similarity=0.093  Sum_probs=52.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEe---eeee-ecCc--eeEEEEcCCCCEEEEecC-----CCcEEEEECCCCc
Q 010470          321 SSRHVVSAAYD-----RTLKVWDLHKGYCV---NTII-FHSN--CNALAFSMDGQTIFSGHI-----DGNLRLWDIQTGK  384 (510)
Q Consensus       321 ~~~~l~s~~~d-----g~i~iwd~~~~~~~---~~~~-~~~~--i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~  384 (510)
                      ++.+++.|+.+     ..+..||+.+....   ..+. .+..  -.+++. -++.+.+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45666777754     35677787665531   1111 1111  122222 25666666664     2358889987654


Q ss_pred             eeeeecccccccEEEEEEcCCCCEEEEEecCC----cEEEEEcCCce
Q 010470          385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDN----LHNLFDIRSLE  427 (510)
Q Consensus       385 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~i~d~~~~~  427 (510)
                      -...-...............++++.+.|+.++    .+.+||+.+..
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            22211111101111222234567777777653    35678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.26  E-value=1  Score=42.16  Aligned_cols=230  Identities=16%  Similarity=0.144  Sum_probs=117.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe---eEee----cCCCCceEEEEEecC--CCCEEEEEeCC--------
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV---RHTL----TGHTDKVCAVDVSKI--SSRHVVSAAYD--------  331 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~~~~v~~i~~~~~--~~~~l~s~~~d--------  331 (510)
                      ..+.|+|.|||+.++ +...|.|++++ ..+..   +..+    .........++++|.  .+.+|+.....        
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            357899999987655 56699999999 44443   2222    223456789999983  23444433331        


Q ss_pred             -CcEEEEECCCC-------eEe-eeeee----cCceeEEEEcCCCCEEEEecCC-------------CcEEEEECCCCce
Q 010470          332 -RTLKVWDLHKG-------YCV-NTIIF----HSNCNALAFSMDGQTIFSGHID-------------GNLRLWDIQTGKL  385 (510)
Q Consensus       332 -g~i~iwd~~~~-------~~~-~~~~~----~~~i~~i~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~  385 (510)
                       ..|.-|....+       +.+ .....    .+....+.|.|||.+.++.+..             |.|.-.+.. ++.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~  159 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI  159 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence             24544544333       111 11122    2336779999999766654432             334444432 221


Q ss_pred             -------------eeeecccccccEEEEEEcCC-CCEEEEEe-cCCcEEEEEcCCcee----------------------
Q 010470          386 -------------LSEVAAHSLAAVTSISLSRS-GNIILTSG-RDNLHNLFDIRSLEV----------------------  428 (510)
Q Consensus       386 -------------~~~~~~~~~~~i~~i~~~~~-~~~l~~~~-~d~~i~i~d~~~~~~----------------------  428 (510)
                                   ...+... ......++|+|. |.++++-. .++.=.|.-+..+..                      
T Consensus       160 p~dnP~~~~~~~~~~i~A~G-lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYG-LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCCccccCCCceEEEEEeC-CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence                         0111111 145678999998 66555432 222222222221111                      


Q ss_pred             -------eeEeecCCCeeecCceeEEEc-------CCCCEEEEEcCCCeEEEEeCCCcceee----cccccCcCEEEEEE
Q 010470          429 -------CGSLRATGNRVASNWSRSCIS-------PDESYVAAGSADGSVYIWSISKADIVR----TLKEHTAPVLSCSW  490 (510)
Q Consensus       429 -------~~~~~~~~~~~~~~~~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~  490 (510)
                             ...+..+     .....+.|-       -.|.+|++.-..+.|....+..+..+.    .+......+.++++
T Consensus       239 ~~~~~~P~~~~~~~-----~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~  313 (331)
T PF07995_consen  239 CPGFVPPVFAYPPH-----SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ  313 (331)
T ss_dssp             -TTS---SEEETTT-------EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred             CCCcCccceeecCc-----cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence                   0001111     011223332       145677777767788888876443221    12334457999999


Q ss_pred             eCCCCcEEEeeCCCeEE
Q 010470          491 SGLGKPLASADKNGVVC  507 (510)
Q Consensus       491 ~~~~~~l~s~~~dg~i~  507 (510)
                      .|||.+.++.+.+|.|+
T Consensus       314 ~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  314 GPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             ETTSEEEEEE-TTTTEE
T ss_pred             cCCCeEEEEECCCCeEe
Confidence            99999888888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=96.25  E-value=0.21  Score=34.04  Aligned_cols=61  Identities=21%  Similarity=0.278  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA  142 (510)
Q Consensus        82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~  142 (510)
                      +...++..-..|.-|+.++++++++...|..+.+.+....+.|..+..+++.+...-+.++
T Consensus         9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL   69 (79)
T PRK15422          9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL   69 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555556666666666666666666655555555555555555554444433333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.25  E-value=0.89  Score=46.30  Aligned_cols=104  Identities=15%  Similarity=0.116  Sum_probs=64.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV  125 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~  125 (510)
                      .+..++..|+.||..+....+...............+....+..+.+...++.++.+++.+-..|...+.++..++-.|+
T Consensus        31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ  110 (717)
T PF09730_consen   31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ  110 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            56777888888887766555555544444444444555556666666666777777777766677777777777766666


Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHH
Q 010470          126 SENQQIRA---QLEEMTMKAKNAEAEN  149 (510)
Q Consensus       126 ~e~~~l~~---~~~~~~~~~~~~~~~~  149 (510)
                      +....|+.   +++.+.-.++.++++.
T Consensus       111 Kqvs~Lk~sQvefE~~Khei~rl~Ee~  137 (717)
T PF09730_consen  111 KQVSVLKQSQVEFEGLKHEIKRLEEEI  137 (717)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            66555533   3444444455554443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=96.23  E-value=0.61  Score=39.64  Aligned_cols=16  Identities=31%  Similarity=0.443  Sum_probs=6.0

Q ss_pred             HHHHHHHHhhhhhHHH
Q 010470           57 ELQQCYKAQSRLSEQL   72 (510)
Q Consensus        57 el~~~~k~~~~~~~~l   72 (510)
                      ++.+.+....++++++
T Consensus        82 e~~~~~~~l~~l~~el   97 (191)
T PF04156_consen   82 ELSELQQQLQQLQEEL   97 (191)
T ss_pred             hHHhHHHHHHHHHHHH
Confidence            3333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.74  Score=46.04  Aligned_cols=43  Identities=35%  Similarity=0.463  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          112 TELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVD  154 (510)
Q Consensus       112 ~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~  154 (510)
                      .+++...+..+....|.++++.++.+++.++.++-.+...+..
T Consensus       472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~  514 (1118)
T KOG1029|consen  472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH  514 (1118)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3345555555666778888888888888877777666554443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.23  E-value=0.74  Score=42.15  Aligned_cols=33  Identities=15%  Similarity=0.385  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          112 TELEEKIKALELVVSENQQIRAQLEEMTMKAKN  144 (510)
Q Consensus       112 ~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~  144 (510)
                      .++.+...+++..+.+...++.++..+...++.
T Consensus       211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~  243 (312)
T smart00787      211 EKLKKLLQEIMIKVKKLEELEEELQELESKIED  243 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333344444444333333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.22  E-value=0.2  Score=42.55  Aligned_cols=38  Identities=18%  Similarity=0.194  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          112 TELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAEN  149 (510)
Q Consensus       112 ~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~  149 (510)
                      .++++....+..|+.++++|+.++..++.+.+.++.++
T Consensus       125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~  162 (206)
T PRK10884        125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL  162 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444445444444444444443333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=0.59  Score=46.70  Aligned_cols=30  Identities=23%  Similarity=0.171  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 010470           47 WKEKADNLETELQQCYKAQSRLSEQLVVEV   76 (510)
Q Consensus        47 ~~~~~~~l~~el~~~~k~~~~~~~~l~~~~   76 (510)
                      +..+...|+.||..+.-.+.++.++|...+
T Consensus       435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr  464 (1118)
T KOG1029|consen  435 LNAKKKQLQQELETLNFKLQQLSGKLQDVR  464 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence            444555566666666656666665554433

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.33  Score=40.46  Aligned_cols=173  Identities=14%  Similarity=0.121  Sum_probs=97.0

Q ss_pred             CCCEEEEeeC--CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeEeecCCCCce
Q 010470          236 NSARLISGGQ--DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRHTLTGHTDKV  312 (510)
Q Consensus       236 ~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v  312 (510)
                      +|.++.+.+.  ...|++||+.+|+.+.+-.-....+..=-...-+.++..- -.+|....||.++-+.+..+. ..+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            4566666654  3469999999988765433221122211111223334333 367888899988887776665 33444


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 010470          313 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL  386 (510)
Q Consensus       313 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  386 (510)
                      +.++.   ++..++.++...++..-|..+-....++...      ...+.+.|- +|...+-.-.+..|...|..+|+.+
T Consensus       134 WgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~  209 (262)
T COG3823         134 WGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV  209 (262)
T ss_pred             eeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence            55543   3334555544567777777654433333221      224555553 6665554444556666777777766


Q ss_pred             eeecc-----------cccccEEEEEEcCCCCEEEEEe
Q 010470          387 SEVAA-----------HSLAAVTSISLSRSGNIILTSG  413 (510)
Q Consensus       387 ~~~~~-----------~~~~~i~~i~~~~~~~~l~~~~  413 (510)
                      ..+..           .+....+.|++.|++..++..+
T Consensus       210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            54432           1224577899999875554443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.17  E-value=0.42  Score=41.38  Aligned_cols=88  Identities=10%  Similarity=0.135  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           51 ADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQ  130 (510)
Q Consensus        51 ~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~  130 (510)
                      +..++..+.+..+.+.++.+.+....+    -...+++..+++..|..|...+.+++++....+..+...+..++.|+..
T Consensus         3 i~~ir~K~~~lek~k~~i~~e~~~~e~----ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~   78 (230)
T PF10146_consen    3 IKEIRNKTLELEKLKNEILQEVESLEN----EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK   78 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555544444444333322222    2233333344444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHH
Q 010470          131 IRAQLEEMTMKA  142 (510)
Q Consensus       131 l~~~~~~~~~~~  142 (510)
                      .+..+..+...+
T Consensus        79 ~~~~i~r~~eey   90 (230)
T PF10146_consen   79 RQEKIQRLYEEY   90 (230)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.17  E-value=1.3  Score=42.41  Aligned_cols=149  Identities=13%  Similarity=0.098  Sum_probs=80.9

Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEECCCCcee-eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee--
Q 010470          354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL-SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG--  430 (510)
Q Consensus       354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--  430 (510)
                      ...+..+++|.++++|.....++-||  .+... ..........+.++.+.+++..++++ ..|.+. +....+..-.  
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            34456677887777766533233344  33321 22333333678999999999888776 445443 3333332110  


Q ss_pred             EeecCC-CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          431 SLRATG-NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       431 ~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                      .+.... ......+..+.+.+++..+++|. +|.+.... ..|+......   .-..+.+.+.|.++++.+++ +.+|.|
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~i  393 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVL  393 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEE
Confidence            111111 11112244477888877766654 67565553 5555433332   23456889999877665555 467887


Q ss_pred             EEc
Q 010470          507 CVW  509 (510)
Q Consensus       507 ~iw  509 (510)
                      .-|
T Consensus       394 l~~  396 (398)
T PLN00033        394 LRY  396 (398)
T ss_pred             EEe
Confidence            655

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=96.15  E-value=0.74  Score=39.82  Aligned_cols=67  Identities=21%  Similarity=0.266  Sum_probs=38.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKT  112 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~  112 (510)
                      ...++|..|+..|+.+.|.+..-.=+|......++..++...+....+..|+.++..+.+.+..|+.
T Consensus        15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek   81 (307)
T PF10481_consen   15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK   81 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence            5677888888888887777766655555555554444444444444444455555444444443333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.14  E-value=1.2  Score=46.80  Aligned_cols=9  Identities=22%  Similarity=0.405  Sum_probs=3.5

Q ss_pred             HHHHHHhhh
Q 010470           14 ALKALRKRH   22 (510)
Q Consensus        14 ~~~~~~~~~   22 (510)
                      +.++|+.-+
T Consensus      1568 V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1568 VVEALEEAD 1576 (1758)
T ss_pred             HHHHHHHHH
Confidence            333444333

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.14  E-value=0.4  Score=37.04  Aligned_cols=112  Identities=8%  Similarity=0.170  Sum_probs=72.6

Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCCC--------eeEeecCCCCceEEEEEecC----CCCEEEEEeCCCcEEEEECCC
Q 010470          274 AITHDNRSVIAASSSNNLYVWDVNSGR--------VRHTLTGHTDKVCAVDVSKI----SSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       274 ~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~i~~~~~----~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      .|......|++++..|.|.|++.....        .+..+. ....|++++-.+.    ....|+.|+ ...+..||+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            455555678888888999999876332        333343 5567777766553    245566665 67899999998


Q ss_pred             CeEeeeeeecCceeEEEEcC----CCCEEEEecCCCcEEEEECCCCceeee
Q 010470          342 GYCVNTIIFHSNCNALAFSM----DGQTIFSGHIDGNLRLWDIQTGKLLSE  388 (510)
Q Consensus       342 ~~~~~~~~~~~~i~~i~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~  388 (510)
                      ..-+..-..+..++++.+-.    ....+++|+ +..|.-||....+....
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence            87766666667788877732    234444544 56787788654444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.11  E-value=0.23  Score=45.69  Aligned_cols=112  Identities=21%  Similarity=0.259  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           51 ADNLETELQQCYKAQSRLSEQLVVEV------AESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELV  124 (510)
Q Consensus        51 ~~~l~~el~~~~k~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l  124 (510)
                      +..++.++.++.+....+...+....      .....+...++..+.+..++.+++.+++.+..++..++.++..+.+.+
T Consensus        11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l   90 (314)
T PF04111_consen   11 LEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL   90 (314)
T ss_dssp             -------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010470          125 VSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQ  162 (510)
Q Consensus       125 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (510)
                      ..+-...-...+.++..+....++...+.........+
T Consensus        91 ~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~  128 (314)
T PF04111_consen   91 DEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ  128 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.10  E-value=0.25  Score=49.45  Aligned_cols=111  Identities=18%  Similarity=0.283  Sum_probs=74.5

Q ss_pred             ceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee--cCceeEEEEc--CCCCEEEEecCCCcEEEEECC-----
Q 010470          311 KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF--HSNCNALAFS--MDGQTIFSGHIDGNLRLWDIQ-----  381 (510)
Q Consensus       311 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~i~~~--~~~~~l~~~~~dg~i~i~d~~-----  381 (510)
                      ...-+.-+. -+...++.+....+.|||.+.+.....-..  ...|.++.|.  |+|+.+++.+..+.|.+|.-.     
T Consensus        31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344444444 344555555567899999998876555444  5678888885  688988888888899988541     


Q ss_pred             ----CCceeeee--cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          382 ----TGKLLSEV--AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       382 ----~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                          +-.++..+  ..+...+|.+..|.++|.+++.++  +.+.|+|-.
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence                11233333  334446899999999998777653  467777643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.03  E-value=1.3  Score=41.23  Aligned_cols=40  Identities=30%  Similarity=0.467  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          100 LTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMT  139 (510)
Q Consensus       100 l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~  139 (510)
                      +.+++.++..+..++++..+.+..++.++..+...++.+.
T Consensus       211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~  250 (325)
T PF08317_consen  211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE  250 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444433334444433333333333

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.02  E-value=0.77  Score=38.90  Aligned_cols=145  Identities=15%  Similarity=0.132  Sum_probs=78.5

Q ss_pred             CEEEEEeCCCcEEEEECC--CCeEeeeeeecCceeEEEEcCCCCEEEEecCC---C---cEEEE---ECC--CCceee--
Q 010470          323 RHVVSAAYDRTLKVWDLH--KGYCVNTIIFHSNCNALAFSMDGQTIFSGHID---G---NLRLW---DIQ--TGKLLS--  387 (510)
Q Consensus       323 ~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g---~i~i~---d~~--~~~~~~--  387 (510)
                      ..++.+...+.|.+|++.  .......+..-+.+..+.++..|+++++--.+   .   .+++|   ...  ...++.  
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            455444557889999987  34556666666889999999999999984322   2   45664   221  111111  


Q ss_pred             -------------------eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee-ee-----EeecCCCeeecC
Q 010470          388 -------------------EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV-CG-----SLRATGNRVASN  442 (510)
Q Consensus       388 -------------------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~-----~~~~~~~~~~~~  442 (510)
                                         .+..+-..++.+++..|-..-|++|+ ++.+.+|.+..... ..     .|....-.+...
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~  187 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN  187 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence                               11112224566777777544444444 45788888764333 11     111111111111


Q ss_pred             ceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          443 WSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       443 ~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      +....++--+.|+|..+.. .++++.+
T Consensus       188 ~~p~~v~ic~~yiA~~s~~-ev~Vlkl  213 (215)
T PF14761_consen  188 FKPTQVAICEGYIAVMSDL-EVLVLKL  213 (215)
T ss_pred             ceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence            1112233346778777644 4777654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.97  E-value=0.17  Score=47.98  Aligned_cols=143  Identities=13%  Similarity=0.136  Sum_probs=90.8

Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC-------EEEEecCCCcEEEEECCC-Cceeeeecc
Q 010470          321 SSRHVV-SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ-------TIFSGHIDGNLRLWDIQT-GKLLSEVAA  391 (510)
Q Consensus       321 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~i~d~~~-~~~~~~~~~  391 (510)
                      +..+|+ .|+....++-.|+..|+.+.....+..+ -+.|.|+.+       .-++|-++..|.-.|.+- |..+.....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            444444 5566678888999999999999888887 788887532       234566666777778764 322221111


Q ss_pred             c---ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          392 H---SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       392 ~---~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      .   ......|..- ....++++++..|.|++||--.......+++.+..+.    .+..+.+|++|++.+. ..+.+-|
T Consensus       557 KdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk----~idvta~Gk~ilaTCk-~yllL~d  630 (776)
T COG5167         557 KDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIK----HIDVTANGKHILATCK-NYLLLTD  630 (776)
T ss_pred             hhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCccccccee----eeEeecCCcEEEEeec-ceEEEEe
Confidence            1   1122222222 2456899999999999999654444334444444443    3788899999887774 3577777


Q ss_pred             CC
Q 010470          469 IS  470 (510)
Q Consensus       469 ~~  470 (510)
                      +.
T Consensus       631 ~~  632 (776)
T COG5167         631 VP  632 (776)
T ss_pred             cc
Confidence            54

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=95.96  E-value=1.5  Score=41.44  Aligned_cols=40  Identities=5%  Similarity=-0.070  Sum_probs=20.6

Q ss_pred             CcEEEEECCCCeEeeeeeecC--ceeEEEEcCCCCEEEEecC
Q 010470          332 RTLKVWDLHKGYCVNTIIFHS--NCNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       332 g~i~iwd~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~  371 (510)
                      ..+.+||..+++....-..+.  .........++++++.|+.
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  209 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE  209 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence            468889988765443222221  1111222236777777764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.94  E-value=1.3  Score=40.48  Aligned_cols=29  Identities=7%  Similarity=0.125  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          103 IRDECSQLKTELEEKIKALELVVSENQQI  131 (510)
Q Consensus       103 l~~~~~~l~~~l~~~~~~~~~l~~e~~~l  131 (510)
                      ++.++..|-.+...+..+++.|..+..+|
T Consensus       149 lqtrl~~l~~qr~ql~aq~qsl~a~~k~L  177 (499)
T COG4372         149 LQTRLKTLAEQRRQLEAQAQSLQASQKQL  177 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=95.93  E-value=1.1  Score=39.79  Aligned_cols=57  Identities=28%  Similarity=0.222  Sum_probs=28.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQI  103 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l  103 (510)
                      .+-+++..|+.+|..+.+..... ..+.....+...++....++...|.++.++.+.+
T Consensus       135 ~lvq~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~  191 (294)
T COG1340         135 ELVQKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEY  191 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777888888887765444443 4444444443333333333333333333333333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=95.93  E-value=0.38  Score=39.99  Aligned_cols=97  Identities=13%  Similarity=0.166  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHH-----HHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           51 ADNLETELQQCY-----KAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV  125 (510)
Q Consensus        51 ~~~l~~el~~~~-----k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~  125 (510)
                      +.-.++||..+.     |.+..+ -.+-..++....++..+++..++..+|.+++..++.+..++...++.+..++..|.
T Consensus       105 ~elvrkEl~nAlvRAGLktL~~v-~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~Le  183 (290)
T COG4026         105 VELVRKELKNALVRAGLKTLQRV-PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE  183 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010470          126 SENQQIRAQLEEMTMKAKNAEAE  148 (510)
Q Consensus       126 ~e~~~l~~~~~~~~~~~~~~~~~  148 (510)
                      ..++.+..++..+..+...++..
T Consensus       184 E~~~~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         184 EMLKKLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             HHHHhchhHHHHHHHHHHHhccc

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.90  E-value=0.67  Score=36.93  Aligned_cols=30  Identities=23%  Similarity=0.323  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          116 EKIKALELVVSENQQIRAQLEEMTMKAKNA  145 (510)
Q Consensus       116 ~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~  145 (510)
                      .+.+.++.|..+.+.....+.....+++.+
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~  106 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREA  106 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555454444444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=95.89  E-value=1.1  Score=42.71  Aligned_cols=74  Identities=19%  Similarity=0.280  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDR  155 (510)
Q Consensus        82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~  155 (510)
                      ....+....+++..+-.++.++.+++..|..++-.+.+.+..+..|.+.+..-+......-+.++.+...+.++
T Consensus       210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk  283 (596)
T KOG4360|consen  210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK  283 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33334444455555566666666677777777776666666666666666666666555555555555544443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.87  E-value=0.66  Score=36.54  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHH
Q 010470           50 KADNLETELQQCYKAQSRLSEQLVV   74 (510)
Q Consensus        50 ~~~~l~~el~~~~k~~~~~~~~l~~   74 (510)
                      ++..++.++..+.........++..
T Consensus         4 e~~~l~~e~~~~~~~~~~~~~~~~~   28 (132)
T PF07926_consen    4 ELSSLQSELQRLKEQEEDAEEQLQS   28 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK05560 DNA gyrase subunit A; Validated

Probab=95.87  E-value=3  Score=44.12  Aligned_cols=306  Identities=10%  Similarity=0.085  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 010470           84 ALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLE-----EMTMKAKNAEAENKMLVDRWML  158 (510)
Q Consensus        84 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  158 (510)
                      ++.+-...++.++++|++++.+++.+++.-|..-.+....+..|+..++.++.     .+....  .+.....++.    
T Consensus       423 ~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg~~RRT~I~~~~--~~i~~edlI~----  496 (805)
T PRK05560        423 RLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFGDPRRTEIIEGE--GDIDDEDLIP----  496 (805)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCceEeeccc--cccchhhccC----


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHhhhcchHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCC
Q 010470          159 QKMQDAERLNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA  238 (510)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~  238 (510)
                                                .-+.++.-+.+|.++.-....-......-.......++....-+..+..+....
T Consensus       497 --------------------------~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~  550 (805)
T PRK05560        497 --------------------------EEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDT  550 (805)
T ss_pred             --------------------------CCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCe


Q ss_pred             EEEEeeCCCeEEE--EeCCCCcce---------ecccccccceeEEEEe--cCCCEEEEEeCCCeEEEEEcCC-------
Q 010470          239 RLISGGQDKSIKL--WDTNTGSLS---------STLYGCLGSVLDLAIT--HDNRSVIAASSSNNLYVWDVNS-------  298 (510)
Q Consensus       239 ~l~s~~~dg~i~i--wd~~~~~~~---------~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~-------  298 (510)
                      .++..+....+++  +++......         ..+.....-+..+.+.  ++..+++..+.+|.++--++..       
T Consensus       551 LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~  630 (805)
T PRK05560        551 LLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSN  630 (805)
T ss_pred             EEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccC


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC---------CCeEeeeeeecCceeEEEEcCCCC-EEEE
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH---------KGYCVNTIIFHSNCNALAFSMDGQ-TIFS  368 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~i~~i~~~~~~~-~l~~  368 (510)
                      |.....+. -.+.+..+.... ....++..+..|.+..+...         .|.....+.....+.++...++.. +++.
T Consensus       631 G~~~ikLk-e~D~lv~v~~~~-~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~  708 (805)
T PRK05560        631 GIIAINLD-EGDELIGVRLTD-GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILT  708 (805)
T ss_pred             CceeeccC-CCCEEEEEEEeC-CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEE


Q ss_pred             ecCCCcEEEEEC-------CCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          369 GHIDGNLRLWDI-------QTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       369 ~~~dg~i~i~d~-------~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      .+..|.+....+       +.++.+..+.... ...+..+........++..+.+|.+..++.
T Consensus       709 vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~  771 (805)
T PRK05560        709 VTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRV  771 (805)
T ss_pred             EEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEH

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.86  E-value=0.21  Score=47.35  Aligned_cols=138  Identities=18%  Similarity=0.210  Sum_probs=87.8

Q ss_pred             CCCEEE-EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCC-------EEEEEecCCcEEEEEcCC-ceeeeEe
Q 010470          362 DGQTIF-SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-------IILTSGRDNLHNLFDIRS-LEVCGSL  432 (510)
Q Consensus       362 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~d~~i~i~d~~~-~~~~~~~  432 (510)
                      +.+.|+ .|.....++-.|+..|+.+..+..+.  .+ -+.|.|+..       .-++|-.+..|.-.|.+- +..+...
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d--dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD--DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCC--cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            444444 46666788888999999999998874  33 577777543       123444555666666653 3222222


Q ss_pred             ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       433 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                      ..........+++ .......||+++|..|.|++||--.......+++-...|..+..+.+|+++++.+..
T Consensus       555 esKdY~tKn~Fss-~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         555 ESKDYKTKNKFSS-GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             eehhccccccccc-cccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            2111111112221 233456699999999999999965444455567777889999999999987766554

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.86  E-value=1  Score=50.60  Aligned_cols=134  Identities=23%  Similarity=0.250  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV  125 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~  125 (510)
                      .+...+..++.++.++......+..++.......+.++..+...+..+..++.++..++.++..+..++..+.+....+.
T Consensus       681 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~  760 (1179)
T TIGR02168       681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE  760 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 010470          126 SENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMID  179 (510)
Q Consensus       126 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (510)
                      .+...+...+..++..+..+..+...+...........................
T Consensus       761 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  814 (1179)
T TIGR02168       761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL  814 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.84  E-value=0.32  Score=44.75  Aligned_cols=95  Identities=17%  Similarity=0.179  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           55 ETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQ  134 (510)
Q Consensus        55 ~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~  134 (510)
                      ..++.+..+....+.+.-....++++.+++...++.+++.+++.+..++.++..+.-........+...+.++++.+..+
T Consensus        42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q  121 (314)
T PF04111_consen   42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ  121 (314)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHH
Q 010470          135 LEEMTMKAKNAEAEN  149 (510)
Q Consensus       135 ~~~~~~~~~~~~~~~  149 (510)
                      +......++.++.-+
T Consensus       122 ~~~~~~~L~~L~ktN  136 (314)
T PF04111_consen  122 YEYASNQLDRLRKTN  136 (314)
T ss_dssp             HHHHHHHHHCHHT--
T ss_pred             HHHHHHHHHHHHhcC

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.84  E-value=1.1  Score=38.98  Aligned_cols=100  Identities=15%  Similarity=0.189  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           56 TELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQL  135 (510)
Q Consensus        56 ~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~  135 (510)
                      .+|..--.....+...+.......+.-...+++..+++..|..|...+.+++++....+..+...+..++.|+...+..+
T Consensus         4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i   83 (230)
T PF10146_consen    4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI   83 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010470          136 EEMTMKAKNAEAENKMLVDR  155 (510)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~  155 (510)
                      ..+...+..+..+-..+...
T Consensus        84 ~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   84 QRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHH

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.84  E-value=0.59  Score=35.72  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             HhhcCccccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           34 IALSRPIISQGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTE  113 (510)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~  113 (510)
                      +....|.+.....+...+..++.|+..++.....+..+-....+++-.+.....+...    ...++..++.++.+|..+
T Consensus         8 ~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~----~~~~~~~L~~el~~l~~r   83 (120)
T PF12325_consen    8 TSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA----LKKEVEELEQELEELQQR   83 (120)
T ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          114 LEEKIKALELVVSENQQIRAQLEEMTMKAKN  144 (510)
Q Consensus       114 l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~  144 (510)
                      ++.+..-+-.-..+.+.|+..+..+..-++.
T Consensus        84 y~t~LellGEK~E~veEL~~Dv~DlK~myr~  114 (120)
T PF12325_consen   84 YQTLLELLGEKSEEVEELRADVQDLKEMYRE  114 (120)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.83  E-value=0.0014  Score=60.92  Aligned_cols=147  Identities=10%  Similarity=0.130  Sum_probs=0.0

Q ss_pred             CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCCceeee
Q 010470          352 SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCG  430 (510)
Q Consensus       352 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  430 (510)
                      ..+....|.|.+.-++.++.+..+..|| +.++........  +....++|+.+|. .++.+-..+.+.+||+.+.....
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n~eytqq  111 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ  111 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhh-hhcceecccCCc--hhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH


Q ss_pred             EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                      .-.+......-    ..|++.+..++.|...|.+.|++..+.+.......|...+++++|.+.+ +.+.++.|..+
T Consensus       112 LE~gg~~s~sl----l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L  182 (615)
T KOG2247|consen  112 LESGGTSSKSL----LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTL  182 (615)
T ss_pred             HhccCcchHHH----HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHH

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	510
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-30
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-22
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-30
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-22
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-30
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-22
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-30
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-22
2h9l_A	329	Wdr5delta23 Length = 329		6e-30
2h9l_A	329	Wdr5delta23 Length = 329		7e-22
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-30
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-22
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-30
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		8e-22
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-30
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-22
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-30
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-22
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-30
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		8e-22
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-30
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		9e-22
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-30
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		9e-22
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-30
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		8e-22
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-30
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-21
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-30
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-21
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-29
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-22
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-29
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-19
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		7e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-29
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-21
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-09
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-25
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-22
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-21
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-18
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-15
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		6e-18
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-16
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-16
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-15
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-15
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-15
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-15
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-15
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-15
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-14
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-14
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		7e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-14
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-14
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-14
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-14
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-14
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-14
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-10
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-11
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-11
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-08
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		8e-11
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-10
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-09
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-09
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-09
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-09
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		6e-07
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		8e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-06
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		5e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		6e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		1e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		5e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 38  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 156
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 270
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 306

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 36  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 93
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 150
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 210 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 265
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIW 286

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 40  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 99
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 158
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 272
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 308

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 38  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 95
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 96  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 152
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 153 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 212 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 267
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 268 FSVTGGKWIVSGSEDNLVYIW 288

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  129 bits (323), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 16  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 134
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 248
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 14  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 71
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 128
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 188 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 243
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIW 264

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  129 bits (323), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 140
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 254
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 20  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 77
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 134
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 194 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 249
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIW 270

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 33  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 92
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 93  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 151
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 265
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 301

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 31  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 88
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 145
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 205 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 260
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 261 FSVTGGKWIVSGSEDNLVYIW 281

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 17  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 76
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 77  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 135
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 249
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 250 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 285

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 15  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 72
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 129
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 189 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 244
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 245 FSVTGGKWIVSGSEDNLVYIW 265

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 16  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 134
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 248
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 14  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 71
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 128
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 188 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 243
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIW 264

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 16/290 (5%)
Query: 204 GAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL 263
           G+EF   +      K  +  H    +S+ F  N   L S   DK IK+W    G    T+
Sbjct: 8   GSEFVKPNYA---LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323
            G    + D+A + D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S 
Sbjct: 65  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSN 123
Query: 324 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQT 382
            +VS ++D ++++WD+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 383 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 442
           G+ L  +       V+ +  S +G  IL +  DN   L+D    +   +     N     
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE---- 239
Query: 443 WSRSCISPDES-----YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             + CI  + S     ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 240 --KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 17  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 131
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 191 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 246
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIW 267

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 12  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 71
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 72  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 130
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 244
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 245 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 280

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 10  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 67
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 124
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 184 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 239
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 240 FSVTGGKWIVSGSEDNLVYIW 260

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 21  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 80
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 81  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 139
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 253
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 289

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 19  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 76
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 133
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 193 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 248
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 249 FSVTGGKWIVSGSEDNLVYIW 269

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 140
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 254
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 20  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 77
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 134
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 194 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 249
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIW 270

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 140
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 254
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 20  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 77
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 134
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 194 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 249
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIW 270

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 16/290 (5%)
Query: 204 GAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL 263
           G+EF   +      K  +  H    +S+ F  N   L S   DK IK+W    G    T+
Sbjct: 8   GSEFVKPNYA---LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323
            G    + D+A + D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S 
Sbjct: 65  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSN 123
Query: 324 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQT 382
            +VS ++D ++++WD+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 383 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 442
           G+ L  +       V+ +  S +G  IL +  DN   L+D    +   +     N     
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE---- 239
Query: 443 WSRSCISPDES-----YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             + CI  + S     ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 240 --KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + ++S+   + +W    G+   T++GH  K+   DV
Sbjct: 17  ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 131
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 191 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 246
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIW 267

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  128 bits (321), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 135/271 (49%), Gaps = 13/271 (4%)
Query: 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV 282
            H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + D+  +
Sbjct: 24  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 283 IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 342
           ++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++WD+  G
Sbjct: 84  VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTG 142
Query: 343 YCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 401
            C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       V+ + 
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 402 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES-----YVA 456
            S +G  IL +  DN   L+D    +   +     N       + CI  + S     ++ 
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTGGKWIV 256
Query: 457 AGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
           +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS 287

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 125/241 (51%), Gaps = 20/241 (8%)
Query: 279 NRSVIAASSSNNLY-VWDVNSGRVRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKV 336
           N   +A+SS++ L  +W    G+   T++GH  K+   DV+  S S  +VSA+ D+TLK+
Sbjct: 37  NGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSNLLVSASDDKTLKI 94
Query: 337 WDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 392
           WD+  G C+ T+  HSN    CN   F+     I SG  D ++R+WD++TG  L  + AH
Sbjct: 95  WDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 393 SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 452
           S   V+++  +R G++I++S  D L  ++D  S +   +L    N      S    SP+ 
Sbjct: 152 S-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV---SFVKFSPNG 207
Query: 453 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL----GKPLASADKNGVVCV 508
            Y+ A + D ++ +W  SK   ++T   H      C ++      GK + S  ++ +V +
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 509 W 509
           W
Sbjct: 267 W 267

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           ++ FS +G+ + S   D  +++W    GK    ++ H L  ++ ++ S   N+++++  D
Sbjct: 31  SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDD 89
Query: 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSC-ISPDESYVAAGSADGSVYIWSISKADI 474
               ++D+ S +   +L+   N V       C  +P  + + +GS D SV IW +     
Sbjct: 90  KTLKIWDVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++TL  H+ PV +  ++  G  + S+  +G+  +W
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  128 bits (321), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K  +  H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + 
Sbjct: 15  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 74
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++W
Sbjct: 75  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 133
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           D+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       
Sbjct: 134 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--- 453
           V+ +  S +G  IL +  DN   L+D    +   +     N       + CI  + S   
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTG 247
Query: 454 --YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 248 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 283

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 20/241 (8%)
Query: 279 NRSVIAASSSNNLY-VWDVNSGRVRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKV 336
           N   +A+SS++ L  +W    G+   T++GH  K+   DV+  S S  +VSA+ D+TLK+
Sbjct: 33  NGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSNLLVSASDDKTLKI 90
Query: 337 WDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 392
           WD+  G C+ T+  HSN    CN   F+     I SG  D ++R+WD++TGK L  + AH
Sbjct: 91  WDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 147
Query: 393 SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 452
           S   V+++  +R G++I++S  D L  ++D  S +   +L    N      S    SP+ 
Sbjct: 148 S-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV---SFVKFSPNG 203
Query: 453 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL----GKPLASADKNGVVCV 508
            Y+ A + D ++ +W  SK   ++T   H      C ++      GK + S  ++ +V +
Sbjct: 204 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVYI 262
Query: 509 W 509
           W
Sbjct: 263 W 263

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           ++ FS +G+ + S   D  +++W    GK    ++ H L  ++ ++ S   N+++++  D
Sbjct: 27  SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDD 85
Query: 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSC-ISPDESYVAAGSADGSVYIWSISKADI 474
               ++D+ S +   +L+   N V       C  +P  + + +GS D SV IW +     
Sbjct: 86  KTLKIWDVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 140
Query: 475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++TL  H+ PV +  ++  G  + S+  +G+  +W
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 142/290 (48%), Gaps = 16/290 (5%)
Query: 204 GAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL 263
           G+EF   +      K  +  H    +S+ F  N   L +   DK IK+W    G    T+
Sbjct: 8   GSEFVKPNYA---LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI 64
Query: 264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR 323
            G    + D+A + D+  +++AS    L +WDV+SG+   TL GH++ V   + +   S 
Sbjct: 65  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSN 123
Query: 324 HVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQT 382
            +VS ++D ++++WD+  G C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 383 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 442
           G+ L  +       V+ +  S +G  IL +  DN   L+D    +   +     N     
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE---- 239
Query: 443 WSRSCISPDES-----YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
             + CI  + S     ++ +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 240 --KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           +L  TL G   +V  +  + +   + A+S+   + +W    G+   T++GH  K+   DV
Sbjct: 17  ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 318 SKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHID 372
           +  S S  +VSA+ D+TLK+WD+  G C+ T+  HSN    CN   F+     I SG  D
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFD 131
Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
            ++R+WD++TGK L  + AHS   V+++  +R G++I++S  D L  ++D  S +   +L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
               N      S    SP+  Y+ A + D ++ +W  SK   ++T   H      C ++ 
Sbjct: 191 IDDDNPPV---SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFAN 246
Query: 493 L----GKPLASADKNGVVCVW 509
                GK + S  ++ +V +W
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIW 267

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 139/268 (51%), Gaps = 14/268 (5%)
Query: 211 STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSV 270
           S V   C   +  H GG  S     N   +ISG  D+++K+W+  TG    TLYG   +V
Sbjct: 145 SAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNAETGECIHTLYGHTSTV 202
Query: 271 LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY 330
             + + H+ R V++ S    L VWD+ +G+  H L GH   V AV   +   R VVS AY
Sbjct: 203 RCMHL-HEKR-VVSGSRDATLRVWDIETGQCLHVLMGH---VAAVRCVQYDGRRVVSGAY 257
Query: 331 DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 390
           D  +KVWD     C++T+  H+N    +   DG  + SG +D ++R+WD++TG  +  + 
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTN-RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 391 AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450
            H   ++TS  +    NI+++   D+   ++DI++ +   +L+      +   + +C+  
Sbjct: 317 GHQ--SLTS-GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS---AVTCLQF 370
Query: 451 DESYVAAGSADGSVYIWSISKADIVRTL 478
           ++++V   S DG+V +W +   + +R L
Sbjct: 371 NKNFVITSSDDGTVKLWDLKTGEFIRNL 398

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 13/200 (6%)
Query: 282 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK 341
           +++ S  N L VW   +G+   TL GHT  V +   S++    ++S + DRTLKVW+   
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISGSTDRTLKVWNAET 188
Query: 342 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 401
           G C++T+  H++       +  + + SG  D  LR+WDI+TG+ L  +  H +AAV  + 
Sbjct: 189 GECIHTLYGHTS-TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQ 246
Query: 402 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 461
               G  +++   D +  ++D  +     +L+   NRV S      +  D  +V +GS D
Sbjct: 247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS------LQFDGIHVVSGSLD 298
Query: 462 GSVYIWSISKADIVRTLKEH 481
            S+ +W +   + + TL  H
Sbjct: 299 TSIRVWDVETGNCIHTLTGH 318

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 11/147 (7%)
Query: 363 GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD 422
           G  I SG  D  L++W   TGK L  +  H+    +S       NII++   D    +++
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS---QMRDNIIISGSTDRTLKVWN 185
Query: 423 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT 482
             + E   +L    + V       C+   E  V +GS D ++ +W I     +  L  H 
Sbjct: 186 AETGECIHTLYGHTSTV------RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 483 APVLSCSWSGLGKPLASADKNGVVCVW 509
           A V    +   G+ + S   + +V VW
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVW 264

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 135/271 (49%), Gaps = 13/271 (4%)
Query: 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV 282
            H    +S+ F  N   L S   DK IK+W    G    T+ G    + D+A + D+  +
Sbjct: 24  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 283 IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG 342
           ++AS    L +WDV+SG+   TL GH++ V   + +   S  +VS ++D ++++WD+  G
Sbjct: 84  VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTG 142
Query: 343 YCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS 401
            C+ T+  HS+  +A+ F+ DG  I S   DG  R+WD  +G+ L  +       V+ + 
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 402 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES-----YVA 456
            S +G  IL +  DN   L+D    +   +     N       + CI  + S     ++ 
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNE------KYCIFANFSVTGGKWIV 256
Query: 457 AGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
           +GS D  VYIW++   +IV+ L+ HT  V+S
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS 287

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 20/241 (8%)
Query: 279 NRSVIAASSSNNLY-VWDVNSGRVRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKV 336
           N   +A+SS++ L  +W    G+   T++GH  K+   DV+  S S  +VSA+ D+TLK+
Sbjct: 37  NGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSNLLVSASDDKTLKI 94
Query: 337 WDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 392
           WD+  G C+ T+  HSN    CN   F+     I SG  D ++R+WD++TG  L  + AH
Sbjct: 95  WDVSSGKCLKTLKGHSNYVFCCN---FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 393 SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 452
           S   V+++  +R G++I++S  D L  ++D  S +   +L    N      S    SP+ 
Sbjct: 152 S-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV---SFVKFSPNG 207
Query: 453 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL----GKPLASADKNGVVCV 508
            Y+ A + D  + +W  SK   ++T   H      C ++      GK + S  ++ +V +
Sbjct: 208 KYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 509 W 509
           W
Sbjct: 267 W 267

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           ++ FS +G+ + S   D  +++W    GK    ++ H L  ++ ++ S   N+++++  D
Sbjct: 31  SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDD 89
Query: 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSC-ISPDESYVAAGSADGSVYIWSISKADI 474
               ++D+ S +   +L+   N V       C  +P  + + +GS D SV IW +     
Sbjct: 90  KTLKIWDVSSGKCLKTLKGHSNYV-----FCCNFNPQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++TL  H+ PV +  ++  G  + S+  +G+  +W
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 154/293 (52%), Gaps = 13/293 (4%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           ++++ AH      + F  +   + S   DK++KLW+ N G L  TL G   SV  +A + 
Sbjct: 9   RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP 67
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D +++ +AS    + +W+ N G++  TLTGH+  V  V  S    + + SA+ D+T+K+W
Sbjct: 68  DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW 125
Query: 338 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           +   G  + T+  H S+   +AFS DGQTI S   D  ++LW+ + G+LL  +  HS ++
Sbjct: 126 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS-SS 182
Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA 456
           V  ++ S  G  I ++  D    L++ R+ ++  +L    + V         SPD   +A
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRG----VAFSPDGQTIA 237
Query: 457 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           + S D +V +W+     +++TL  H++ V   ++   G+ +ASA  +  V +W
Sbjct: 238 SASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 152/294 (51%), Gaps = 30/294 (10%)
Query: 237 SARLISGGQDKSIKLWDTNTGSLSST---------LYGCLGSVLDLAITHDNRSVIAASS 287
           + +++S  +DK++  W  N    SS          L G    V D+A++++    ++AS 
Sbjct: 28  ATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASW 87
Query: 288 SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT 347
            ++L +W++ +G+ ++   GHT  V +V  S   +R +VS   D  L+VW++ KG C++T
Sbjct: 88  DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP-DNRQIVSGGRDNALRVWNV-KGECMHT 145
Query: 348 II--FHSN---CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISL 402
           +    H++   C   + S+D   I SG  D  +++WD+ TG+L++++  H+   VTS+++
Sbjct: 146 LSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHT-NYVTSVTV 204
Query: 403 SRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG 462
           S  G++  +S +D +  L+D+   E    + A G  +    ++ C SP+  ++ A +  G
Sbjct: 205 SPDGSLCASSDKDGVARLWDLTKGEALSEM-AAGAPI----NQICFSPNRYWMCAATEKG 259
Query: 463 SVYIWSISKADIVRTL-KEH------TAPVLSCSWSGLGKPLASADKNGVVCVW 509
            + I+ +   DI+  L  EH          +S +WS  G  L S   + V+ VW
Sbjct: 260 -IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 22/221 (9%)
Query: 305 LTGHTDKVCAVDVSKI--SSRHVVSAAYDRTLKVW----DLHKGYCVNTII-----FHSN 353
           LTGH   V ++   +   ++  VVS + D+TL  W    D H   C   +       HS 
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 354 -CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS 412
             + +A S +G    S   D +LRLW++Q G+   +   H+   V S++ S     I++ 
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHT-KDVLSVAFSPDNRQIVSG 127
Query: 413 GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI--SP--DESYVAAGSADGSVYIWS 468
           GRDN   +++++     G    T +R A     SC+  SP  D   + +G  D  V +W 
Sbjct: 128 GRDNALRVWNVK-----GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 469 ISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++   +V  LK HT  V S + S  G   AS+DK+GV  +W
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 137/313 (43%), Gaps = 27/313 (8%)
Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K+ ++ H      ++F    + ++S  +D +IK+WD  TG    TL G   SV D++  H
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
             + + + S+   + +WD        T+ GH   V +V +   +  H+VSA+ D+T+K+W
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMW 219
Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH---- 392
           ++  GYCV T   H      +  + DG  I S   D  +R+W + T +  +E+  H    
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 393 ------------SLAAVTSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN 437
                       S++  T     +SG     +L+  RD    ++D+ S  +C  +   G+
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV-STGMC-LMTLVGH 337
Query: 438 RVASNWSRSCI-SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP 496
               NW R  +      ++ + + D ++ +W       ++TL  H   V S  +      
Sbjct: 338 ---DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394
Query: 497 LASADKNGVVCVW 509
           + +   +  V VW
Sbjct: 395 VVTGSVDQTVKVW 407

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 149/324 (45%), Gaps = 41/324 (12%)
Query: 218 KHKINAHEGGCASILFEYNSARLI-SGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVL 271
           K  + AH     +I    ++A +I S  +DKSI LW     D   G     L G    V 
Sbjct: 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE 434
Query: 272 DLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD 331
           D+ ++ D +  ++ S    L +WD+ +G       GHT  V +V  S + +R +VSA+ D
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRD 493
Query: 332 RTLKVWDLHKGYCVNTIIFHS-------NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384
           RT+K+W+   G C  TI           +C   + +    TI S   D  +++W++   K
Sbjct: 494 RTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444
           L S +A H+   V+++++S  G++  + G+D +  L+D+   +   SL A  N V     
Sbjct: 553 LRSTLAGHT-GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVI---H 606
Query: 445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLK----------EHTAP------VLSC 488
             C SP+  ++ A +  G + IW +    IV  LK          +++ P      V+ C
Sbjct: 607 ALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665
Query: 489 S---WSGLGKPLASADKNGVVCVW 509
           +   WS  G  L S   +GV+ VW
Sbjct: 666 TSLNWSADGSTLFSGYTDGVIRVW 689

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 14/219 (6%)
Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYCVNTIIFHSN-C 354
           ++ T+  HTD V A+     ++  +VSA+ D+++ +W L K     G     +  HS+  
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 414
             +  S DGQ   SG  DG LRLWD+  G        H+   V S++ S     I+++ R
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT-KDVLSVAFSLDNRQIVSASR 492
Query: 415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI--SPD--ESYVAAGSADGSVYIWSIS 470
           D    L++  +L  C    + G     +W  SC+  SP+  +  + + S D +V +W++S
Sbjct: 493 DRTIKLWN--TLGECKYTISEGGEGHRDWV-SCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 471 KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
              +  TL  HT  V + + S  G   AS  K+GVV +W
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 35/292 (11%)
Query: 233 FEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLY 292
            +Y+  +++SG +D +IK+WD NT      L G  GSVL   + +D R +I  SS + + 
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITGSSDSTVR 196
Query: 293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN---TII 349
           VWDVN+G + +TL  H + V  +   + ++  +V+ + DR++ VWD+     +     ++
Sbjct: 197 VWDVNTGEMLNTLIHHCEAVLHL---RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253
Query: 350 FH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI 408
            H +  N + F  D + I S   D  +++W+  T + +  +  H         L     +
Sbjct: 254 GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA---CLQYRDRL 308
Query: 409 ILTSGRDNLHNLFDIRSLEVCGS-LRAT-GNRVASNWSRSCISPDESYVAAGSADGSVYI 466
           +++   DN   L+DI     CG+ LR   G+         CI  D   + +G+ DG + +
Sbjct: 309 VVSGSSDNTIRLWDIE----CGACLRVLEGHEELVR----CIRFDNKRIVSGAYDGKIKV 360
Query: 467 WSISKA---------DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           W +  A           +RTL EH+  V    +      + S+  +  + +W
Sbjct: 361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 410

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 138/318 (43%), Gaps = 18/318 (5%)
Query: 206 EFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG 265
           E+  + T+ +  +  +  H        F  +  R+ S G DK+++++   TG     +  
Sbjct: 596 EWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 655
Query: 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV-CAVDVSKISSRH 324
               VL  A + D+  +   S+   + +WD  +G++ HT   H+++V C    +K +   
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 715
Query: 325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTG 383
           + + + D  LK+WDL++  C NT+  H+N  N   FS D + + S   DG LRLWD+++ 
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Query: 384 K-----------LLSEVAAHSL-AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 431
                       L SE     +   V   S S  G+ I+ + ++ +  LFDI +  +   
Sbjct: 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAE 834
Query: 432 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 491
           +  TG+     +     SP +       +   V +W+I     V   + H + V    +S
Sbjct: 835 IH-TGHHSTIQYCD--FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 492 GLGKPLASADKNGVVCVW 509
             G    +A  +  + VW
Sbjct: 892 PDGSSFLTASDDQTIRVW 909

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 138/318 (43%), Gaps = 18/318 (5%)
Query: 206 EFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG 265
           E+  + T+ +  +  +  H        F  +  R+ S G DK+++++   TG     +  
Sbjct: 603 EWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 662
Query: 266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV-CAVDVSKISSRH 324
               VL  A + D+  +   S+   + +WD  +G++ HT   H+++V C    +K +   
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 722
Query: 325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTG 383
           + + + D  LK+WDL++  C NT+  H+N  N   FS D + + S   DG LRLWD+++ 
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Query: 384 K-----------LLSEVAAHSL-AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 431
                       L SE     +   V   S S  G+ I+ + ++ +  LFDI +  +   
Sbjct: 783 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAE 841
Query: 432 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 491
           +  TG+     +     SP +       +   V +W+I     V   + H + V    +S
Sbjct: 842 IH-TGHHSTIQYCD--FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 898
Query: 492 GLGKPLASADKNGVVCVW 509
             G    +A  +  + VW
Sbjct: 899 PDGSSFLTASDDQTIRVW 916

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 240 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294
           L+S  +DK++  W     D   G    +  G    V D  +T D    ++AS    L +W
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 354
           DV +G       GH   V +VD+ K +S  ++S + D+T+KVW + KG C+ T++ H++ 
Sbjct: 93  DVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 355 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 407
            +    +       D  TI S   D  ++ W++   ++ ++   H+ + + +++ S  G 
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 209
Query: 408 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467
           +I ++G+D    L+++ + +   +L A  + V S       SP+  ++AA +A G + ++
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 263
Query: 468 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 509
           S+    +V  L+   A       P  +S +WS  G+ L +   + V+ VW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 354
           +R TL GH   V ++  S      ++SA+ D+TL  W     D   G  V +   HS+  
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 414
                + DG    S   D  LRLWD+ TG+       H  + V S+ + +  ++I++  R
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSR 127
Query: 415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 467
           D    ++ I+  +   +L    + V    S+  + P+E       + ++AG+ D  V  W
Sbjct: 128 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKMVKAW 181
Query: 468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++++  I      H + + + + S  G  +ASA K+G + +W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 240 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294
           L+S  +DK++  W     D   G    +  G    V D  +T D    ++AS    L +W
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 354
           DV +G       GH   V +VD+ K +S  ++S + D+T+KVW + KG C+ T++ H++ 
Sbjct: 93  DVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 355 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 407
            +    +       D  TI S   D  ++ W++   ++ ++   H+ + + +++ S  G 
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 209
Query: 408 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467
           +I ++G+D    L+++ + +   +L A  + V S       SP+  ++AA +A G + ++
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 263
Query: 468 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 509
           S+    +V  L+   A       P  +S +WS  G+ L +   + V+ VW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 354
           +R TL GH   V ++  S      ++SA+ D+TL  W     D   G  V +   HS+  
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 414
                + DG    S   D  LRLWD+ TG+       H  + V S+ + +  ++I++  R
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSR 127
Query: 415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 467
           D    ++ I+  +   +L    + V    S+  + P+E       + ++AG+ D  V  W
Sbjct: 128 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKMVKAW 181
Query: 468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++++  I      H + + + + S  G  +ASA K+G + +W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 240 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294
           L+S  +DK++  W     D   G    +  G    V D  +T D    ++AS    L +W
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 354
           DV +G       GH   V +VD+ K +S  ++S + D+T+KVW + KG C+ T++ H++ 
Sbjct: 93  DVATGETYQRFVGHKSDVXSVDIDKKASX-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 355 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 407
            +    +       D  TI S   D  ++ W++   ++ ++   H+ + + +++ S  G 
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 209
Query: 408 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467
           +I ++G+D    L+++ + +   +L A  + V S       SP+  ++AA +A G + ++
Sbjct: 210 LIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 263
Query: 468 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 509
           S+    +V  L+   A       P  +S +WS  G+ L +   + V+ VW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 20/222 (9%)
Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 354
           +R TL GH   V ++  S      ++SA+ D+TL  W     D   G  V +   HS+  
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 414
                + DG    S   D  LRLWD+ TG+       H  + V S+ + +  + I++  R
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVXSVDIDKKASXIISGSR 127
Query: 415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 467
           D    ++ I+  +   +L    + V    S+  + P+E       + ++AG+ D  V  W
Sbjct: 128 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKXVKAW 181
Query: 468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++++  I      H + + + + S  G  +ASA K+G + +W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 240 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294
           L+S  +DK++  W     D   G    +  G    V D  +T D    ++AS    L +W
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 354
           DV +G       GH   V +VD+ K +S  ++S + D+T+KVW + KG C+ T++ H++ 
Sbjct: 93  DVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 355 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 407
            +    +       D  TI S   D  ++ W++   ++ ++   H+ + + +++ S  G 
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 209
Query: 408 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467
           +I ++G+D    L+++ + +   +L A  + V S       SP+  ++AA +A G + ++
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 263
Query: 468 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 509
           S+    +V  L+   A       P  +S +WS  G+ L +   + V+ VW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 354
           +R TL GH   V ++  S      ++SA+ D+TL  W     D   G  V +   HS+  
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 414
                + DG    S   D  LRLWD+ TG+       H  + V S+ + +  ++I++  R
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSR 127
Query: 415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 467
           D    ++ I+  +   +L    + V    S+  + P+E       + ++AG+ D  V  W
Sbjct: 128 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKMVKAW 181
Query: 468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++++  I      H + + + + S  G  +ASA K+G + +W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 240 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294
           L+S  +DK++  W     D   G    +  G    V D  +T D    ++AS    L +W
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 354
           DV +G       GH   V +VD+ K +S  ++S + D+T+KVW + KG C+ T++ H++ 
Sbjct: 93  DVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 150
Query: 355 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 407
            +    +       D  TI S   D  ++ W++   ++ ++   H+ + + +++ S  G 
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 209
Query: 408 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467
           +I ++G+D    L+++ + +   +L A  + V S       SP+  ++AA +A G + ++
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 263
Query: 468 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 509
           S+    +V  L+   A       P  +S +WS  G+ L +   + V+ VW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 354
           +R TL GH   V ++  S      ++SA+ D+TL  W     D   G  V +   HS+  
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 414
                + DG    S   D  LRLWD+ TG+       H  + V S+ + +  ++I++  R
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSR 127
Query: 415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 467
           D    ++ I+  +   +L    + V    S+  + P+E       + ++AG+ D  V  W
Sbjct: 128 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKMVKAW 181
Query: 468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++++  I      H + + + + S  G  +ASA K+G + +W
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 29/290 (10%)
Query: 240 LISGGQDKSIKLW-----DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW 294
           L+S  +DK++  W     D   G    +  G    V D  +T D    ++AS    L +W
Sbjct: 27  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 354
           DV +G       GH   V +VD+ K +S  ++S + D+T+KVW + KG C+ T++ H++ 
Sbjct: 87  DVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTI-KGQCLATLLGHNDW 144
Query: 355 NALAFSM-------DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 407
            +    +       D  TI S   D  ++ W++   ++ ++   H+ + + +++ S  G 
Sbjct: 145 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGT 203
Query: 408 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW 467
           +I ++G+D    L+++ + +   +L A  + V S       SP+  ++AA +A G + ++
Sbjct: 204 LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS----LAFSPNRYWLAAATATG-IKVF 257
Query: 468 SISKADIVRTLKEHTA-------P-VLSCSWSGLGKPLASADKNGVVCVW 509
           S+    +V  L+   A       P  +S +WS  G+ L +   + V+ VW
Sbjct: 258 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW-----DLHKGYCVNTIIFHSN-C 354
           +R TL GH   V ++  S      ++SA+ D+TL  W     D   G  V +   HS+  
Sbjct: 3   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 355 NALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR 414
                + DG    S   D  LRLWD+ TG+       H  + V S+ + +  ++I++  R
Sbjct: 63  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSR 121
Query: 415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-------SYVAAGSADGSVYIW 467
           D    ++ I+  +   +L    + V    S+  + P+E       + ++AG+ D  V  W
Sbjct: 122 DKTIKVWTIKG-QCLATLLGHNDWV----SQVRVVPNEKADDDSVTIISAGN-DKMVKAW 175
Query: 468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++++  I      H + + + + S  G  +ASA K+G + +W
Sbjct: 176 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  ++ +S      +WD+ +G+   T TGHT  V ++ ++   +R  VS A D + K+W
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 222
Query: 338 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLA 395
           D+ +G C  T   H S+ NA+ F  +G    +G  D   RL+D++  + L++    + + 
Sbjct: 223 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 282
Query: 396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDES 453
            +TS+S S+SG ++L    D   N++D    +  G L    NRV      SC  ++ D  
Sbjct: 283 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV------SCLGVTDDGM 336
Query: 454 YVAAGSADGSVYIWS 468
            VA GS D  + IW+
Sbjct: 337 AVATGSWDSFLKIWN 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           A+ +  D + + S   DG L +WD  T   +  +   S + V + + + SGN +   G D
Sbjct: 71  AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLD 129
Query: 416 NLHNLFDIRSLEVCGSLRATGNRVA-SNWSRSCISPDESYVAAGSADGSVYIWSISKADI 474
           N+ +++++++ E  G++R +      + +   C   D++ +   S D +  +W I     
Sbjct: 130 NICSIYNLKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 187
Query: 475 VRTLKEHTAPVLSCS 489
             T   HT  V+S S
Sbjct: 188 TTTFTGHTGDVMSLS 202

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  ++ +S      +WD+ +G+   T TGHT  V ++ ++   +R  VS A D + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 338 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLA 395
           D+ +G C  T   H S+ NA+ F  +G    +G  D   RL+D++  + L++    + + 
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDES 453
            +TS+S S+SG ++L    D   N++D    +  G L    NRV      SC  ++ D  
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV------SCLGVTDDGM 325
Query: 454 YVAAGSADGSVYIWS 468
            VA GS D  + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           A+ +  D + + S   DG L +WD  T   +  +   S + V + + + SGN +   G D
Sbjct: 60  AMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLD 118
Query: 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADI 474
           N+ +++++++ E  G++R +          SC    D++ +   S D +  +W I     
Sbjct: 119 NICSIYNLKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 475 VRTLKEHTAPVLSCS 489
             T   HT  V+S S
Sbjct: 177 TTTFTGHTGDVMSLS 191

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  ++ +S      +WD+ +G+   T TGHT  V ++ ++   +R  VS A D + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 338 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLA 395
           D+ +G C  T   H S+ NA+ F  +G    +G  D   RL+D++  + L++    + + 
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDES 453
            +TS+S S+SG ++L    D   N++D    +  G L    NRV      SC  ++ D  
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV------SCLGVTDDGM 325
Query: 454 YVAAGSADGSVYIWS 468
            VA GS D  + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           A+ +  D + + S   DG L +WD  T   +  +   S + V + + + SGN +   G D
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLD 118
Query: 416 NLHNLFDIRSLEVCGSLRATGNRVA-SNWSRSCISPDESYVAAGSADGSVYIWSISKADI 474
           N+ +++++++ E  G++R +      + +   C   D++ +   S D +  +W I     
Sbjct: 119 NICSIYNLKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 475 VRTLKEHTAPVLSCS 489
             T   HT  V+S S
Sbjct: 177 TTTFTGHTGDVMSLS 191

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  ++ +S      +WD+ +G+   T TGHT  V ++ ++   +R  VS A D + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 338 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLA 395
           D+ +G C  T   H S+ NA+ F  +G    +G  D   RL+D++  + L++    + + 
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDES 453
            +TS+S S+SG ++L    D   N++D    +  G L    NRV      SC  ++ D  
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV------SCLGVTDDGM 325
Query: 454 YVAAGSADGSVYIWS 468
            VA GS D  + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           A+ +  D + + S   DG L +WD  T   +  +   S + V + + + SGN +   G D
Sbjct: 60  AMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLD 118
Query: 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADI 474
           N+ +++++++ E  G++R +          SC    D++ +   S D +  +W I     
Sbjct: 119 NICSIYNLKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 475 VRTLKEHTAPVLSCS 489
             T   HT  V+S S
Sbjct: 177 TTTFTGHTGDVMSLS 191

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 11/195 (5%)
Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D+  ++ +S      +WD+ +G+   T TGHT  V ++ ++   +R  VS A D + K+W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLW 211
Query: 338 DLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLA 395
           D+ +G C  T   H S+ NA+ F  +G    +G  D   RL+D++  + L++    + + 
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC--ISPDES 453
            +TS+S S+SG ++L    D   N++D    +  G L    NRV      SC  ++ D  
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV------SCLGVTDDGM 325
Query: 454 YVAAGSADGSVYIWS 468
            VA GS D  + IW+
Sbjct: 326 AVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           A+ +  D + + S   DG L +WD  T   +  +   S + V + + + SGN +   G D
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLD 118
Query: 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADI 474
           N+ +++++++ E  G++R +          SC    D++ +   S D +  +W I     
Sbjct: 119 NICSIYNLKTRE--GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 475 VRTLKEHTAPVLSCS 489
             T   HT  V+S S
Sbjct: 177 TTTFTGHTGDVMSLS 191

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 143/332 (43%), Gaps = 29/332 (8%)
Query: 198 VRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLI-SGGQDKSIKLW---- 252
           V    E   F +  T   T +  +  H G    I        +I S  +DK+I +W    
Sbjct: 11  VDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR 70
Query: 253 -DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK 311
            +TN G     L G    V D+ I+ D +  ++ S    L +WD+ +G       GHT  
Sbjct: 71  DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130
Query: 312 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-----CNALAFSMDGQTI 366
           V +V  S   +R +VS + D+T+K+W+   G C  T+   S+     C   + +     I
Sbjct: 131 VLSVAFSS-DNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188
Query: 367 FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 426
            S   D  +++W++   KL +    H+   + ++++S  G++  + G+D    L+D+   
Sbjct: 189 VSCGWDKLVKVWNLANCKLKTNHIGHT-GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247
Query: 427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT---- 482
           +   +L   G+ + +     C SP+  ++ A +   S+ IW +    IV  LK+      
Sbjct: 248 KHLYTLDG-GDIINA----LCFSPNRYWLCAATGP-SIKIWDLEGKIIVDELKQEVISTS 301
Query: 483 -----APVLSCSWSGLGKPLASADKNGVVCVW 509
                    S +WS  G+ L +   + +V VW
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 138/314 (43%), Gaps = 29/314 (9%)
Query: 216 TCKHKINAHEGGCASILFEYNSARLI-SGGQDKSIKLW-----DTNTGSLSSTLYGCLGS 269
           T +  +  H G    I        +I S  +DK+I +W     +TN G     L G    
Sbjct: 6   TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 65
Query: 270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA 329
           V D+ I+ D +  ++ S    L +WD+ +G       GHT  V +V  S   +R +VS +
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGS 124
Query: 330 YDRTLKVWDLHKGYCVNTIIFHSN-----CNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384
            D+T+K+W+   G C  T+   S+     C   + +     I S   D  +++W++   K
Sbjct: 125 RDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 183
Query: 385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444
           L +    H+   + ++++S  G++  + G+D    L+D+   +   +L   G+ + +   
Sbjct: 184 LKTNHIGHT-GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINA--- 238
Query: 445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT---------APVLSCSWSGLGK 495
             C SP+  ++ A +   S+ IW +    IV  LK+               S +WS  G+
Sbjct: 239 -LCFSPNRYWLCAATGP-SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 296
Query: 496 PLASADKNGVVCVW 509
            L +   + +V VW
Sbjct: 297 TLFAGYTDNLVRVW 310

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 13/201 (6%)
Query: 274 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH-VVSAAYDR 332
           + T+ +  ++ AS      +WDV SG++  +  GH   V  +D++   + +  VS   D+
Sbjct: 161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220
Query: 333 TLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA 391
              VWD+  G CV     H S+ N++ +   G    SG  D   RL+D++  +   EVA 
Sbjct: 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR---EVAI 277
Query: 392 HS----LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC 447
           +S    +   +S+  S SG ++     D   N++D+        L    NRV    S   
Sbjct: 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV----STLR 333
Query: 448 ISPDESYVAAGSADGSVYIWS 468
           +SPD +   +GS D ++ +W+
Sbjct: 334 VSPDGTAFCSGSWDHTLRVWA 354

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 28/221 (12%)
Query: 221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 280
           +  HE    S+ +  +  +L+SG  D+++++WD  TG  S TL      V  +A++  + 
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDG 219
Query: 281 SVIAASSSNN-LYVWDVNSGRVRHTL-------TGHTDKVCAVDVSKISSRHVVSAAYDR 332
             IAA S +  + VWD  +G +   L       TGH D V +V  ++   + VVS + DR
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDR 278
Query: 333 TLKVWDLHK------------GYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 379
           ++K+W+L              G C  T I H +   ++A + + + I SG  D  +  WD
Sbjct: 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Query: 380 IQTGKLLSEVAAH-----SLAAVTSISLSRSGNIILTSGRD 415
            ++G  L  +  H     S+A     SL    N+  T   D
Sbjct: 339 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 379

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 23/248 (9%)
Query: 258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV 317
           S SS LY     +  +  + D + +   +    + +WD+ + ++   L GH   + ++D 
Sbjct: 119 SPSSDLY-----IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 173
Query: 318 SKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM-DGQTIFSGHIDGNLR 376
              S   +VS + DRT+++WDL  G C  T+        +A S  DG+ I +G +D  +R
Sbjct: 174 FP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 377 LWDIQTGKLLSEVAAHSLA------AVTSISLSRSGNIILTSGRD---------NLHNLF 421
           +WD +TG L+  + + + +      +V S+  +R G  +++   D         N +N  
Sbjct: 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292
Query: 422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH 481
           D ++    G+   T             + ++ Y+ +GS D  V  W     + +  L+ H
Sbjct: 293 DSKTPN-SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351
Query: 482 TAPVLSCS 489
              V+S +
Sbjct: 352 RNSVISVA 359

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 356 ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           ++ FS DG+ + +G  D  +R+WDI+  K++  +  H    + S+    SG+ +++   D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE-QDIYSLDYFPSGDKLVSGSGD 186
Query: 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADI 474
               ++D+R+ +   +L      +    +   +SP D  Y+AAGS D +V +W      +
Sbjct: 187 RTVRIWDLRTGQCSLTL-----SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 475 VRTLKE-------HTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           V  L         H   V S  ++  G+ + S   +  V +W
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 140/344 (40%), Gaps = 68/344 (19%)
Query: 179 DRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA 238
           DRL+ S LE +        + ++    +F  + T        +  H     + L ++   
Sbjct: 89  DRLRLSFLENI-------FILKNWYNPKFVPQRTT-------LRGHMTSVITCL-QFEDN 133
Query: 239 RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298
            +I+G  DK I+++D+        L G  G V  L   H    +++ S+   + VWD+  
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192
Query: 299 GRVRHTLTGHTDKVCAVDVSKISS-RHVVSAAYDRTLKVWDLHKGYCVN--------TII 349
           G   H   GH   V  +D+ +  + +++V+ + D TL VW L K   V          ++
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 350 FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII 409
           FH+         +    F G + G+                   +A+V ++  S  GNI+
Sbjct: 253 FHTP--------EENPYFVGVLRGH-------------------MASVRTV--SGHGNIV 283
Query: 410 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS----RSCISPDESYVAAGSADGSVY 465
           ++   DN   ++D+  ++    L    +R+ S       + CIS         S D ++ 
Sbjct: 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS--------ASMDTTIR 335
Query: 466 IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           IW +   +++ TL+ HTA V     S   K L SA  +G +  W
Sbjct: 336 IWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 134/307 (43%), Gaps = 47/307 (15%)
Query: 236 NSARLISGGQDKSIKLW-------DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS 288
           +S  LISG +DK++ +W       +   G     L G    V DLA++ +N   I++S  
Sbjct: 38  DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL--------- 339
             L +WD+ +G       GH  +V +V  S   +R ++SA  +R +K+W++         
Sbjct: 98  KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 340 ----HKGY--CVN-TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH 392
               H  +  CV  + I  S      F+    ++     DG L++W+    ++     AH
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV---GWDGRLKVWNTNF-QIRYTFKAH 212
Query: 393 SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE 452
             + V  +S+S +G  I T G+D    ++DI +L         G+ +    ++   +P  
Sbjct: 213 E-SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTI----NQIAFNPKL 267
Query: 453 SYVAAGSADGSVYIWSI---SKADI----------VRTLKEHTAPVLSCSWSGLGKPLAS 499
            +VA G+  G V I+++   SKA +              K       S +W+ LGK L +
Sbjct: 268 QWVAVGTDQG-VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA 326
Query: 500 ADKNGVV 506
              +GV+
Sbjct: 327 GFTDGVI 333

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 31/233 (13%)
Query: 302 RHTLTGHTDKVCAVDVSKISSRH------VVSAAYDRTLKVWDLHK-------GYCVNTI 348
           R  L GH+D V ++ V+  S +       ++S + D+T+ +W L++       G     +
Sbjct: 14  RGILEGHSDWVTSI-VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL 72
Query: 349 IFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN 407
             H++  + LA S +     S   D  LRLWD++TG        H  + V S++ S    
Sbjct: 73  TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ-SEVYSVAFSPDNR 131
Query: 408 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW-----------SRSCISPDESYVA 456
            IL++G +    L++I  L  C    +      S+W           S + + P   Y A
Sbjct: 132 QILSAGAEREIKLWNI--LGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 457 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           +   DG + +W+ +   I  T K H + V   S S  GK +A+  K+  + +W
Sbjct: 189 SVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 137/344 (39%), Gaps = 68/344 (19%)
Query: 179 DRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSA 238
           DRL+ S LE +        + ++    +F  + T        +  H     + L ++   
Sbjct: 89  DRLRLSFLENI-------FILKNWYNPKFVPQRTT-------LRGHXTSVITCL-QFEDN 133
Query: 239 RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS 298
            +I+G  DK I+++D+        L G  G V  L   H    +++ S+   + VWD+  
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192
Query: 299 GRVRHTLTGHTDKVCAVDVSKISS-RHVVSAAYDRTLKVWDLHKGYCVN--------TII 349
           G   H   GH   V  +D+ +  + +++V+ + D TL VW L K   V          ++
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 350 FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII 409
           FH+         +    F G + G+                    A+V ++S    GNI+
Sbjct: 253 FHT--------PEENPYFVGVLRGHX-------------------ASVRTVS--GHGNIV 283
Query: 410 LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS----RSCISPDESYVAAGSADGSVY 465
           ++   DN   ++D+   +    L    +R+ S       + CIS         S D ++ 
Sbjct: 284 VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCIS--------ASXDTTIR 335
Query: 466 IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           IW +   ++  TL+ HTA V     S   K L SA  +G +  W
Sbjct: 336 IWDLENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 132/274 (48%), Gaps = 23/274 (8%)
Query: 236 NSARLISGGQDKSIKLWDTNTG--SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293
           NS  +++G  D  +K+W        L  +L G    V+ + I+H     IAASSS + ++
Sbjct: 47  NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSLDAHI 104
Query: 294 --WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNT- 347
             WD+ +G+   ++         +  S   S+++ +  +   + ++ +  G   Y ++T 
Sbjct: 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTR 163
Query: 348 --IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS 405
              I      ++A+S DG+ + SG IDG + ++DI TGKLL  +  H++  + S++ S  
Sbjct: 164 GKFIL-----SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP-IRSLTFSPD 217
Query: 406 GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY 465
             +++T+  D    ++D++   + G+L    + V +        PD+++  + S+D SV 
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN----VAFCPDDTHFVSSSSDKSVK 273
Query: 466 IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS 499
           +W +     V T  +H   V    ++G G  + S
Sbjct: 274 VWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 32/241 (13%)
Query: 286 SSSNNLYVWDVNS-GRVRHTLTGHTDKVCAVDVS---KISSRHVVSAAYDRTLKVW---- 337
           SS  NLY    N  G +      H D + +V      K +S  VV+ + D  +KVW    
Sbjct: 8   SSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD 67
Query: 338 ---DL------HKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 388
              DL      H+   V+  I H+   A + S+D           ++RLWD++ GK +  
Sbjct: 68  ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA----------HIRLWDLENGKQIKS 117
Query: 389 VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI 448
           + A  + A T ++ S     + T       N+F + S +   SL   G  + S       
Sbjct: 118 IDAGPVDAWT-LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS----IAY 172
Query: 449 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV 508
           SPD  Y+A+G+ DG + I+ I+   ++ TL+ H  P+ S ++S   + L +A  +G + +
Sbjct: 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232
Query: 509 W 509
           +
Sbjct: 233 Y 233

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 22/295 (7%)
Query: 197 VVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT 256
           +V  S++G      + + S   H I  H        F  N   +  GG D +  +++ ++
Sbjct: 81  IVSASQDG-RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139
Query: 257 GS-------LSSTLYGCLGSVLDLAITHDNRS-VIAASSSNNLYVWDVNSGRVRHTL--- 305
            +       +S  L G  G         D  + +I  S      +WDV +G+        
Sbjct: 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE 199
Query: 306 --TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNTIIFH-SNCNALAFSM 361
             +GHT  V ++ ++ +++   +S + D T+++WDL      V T   H  + N++ F  
Sbjct: 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259
Query: 362 DGQTIFSGHIDGNLRLWDIQTGKLL------SEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           DGQ   +G  DG  RL+D++TG  L       +   + L  VTS++ S SG ++     +
Sbjct: 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN 319
Query: 416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470
               ++D    E+  +L    N      S   +S D S +  GS D ++ IW+ S
Sbjct: 320 GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 106/236 (44%), Gaps = 10/236 (4%)
Query: 236 NSARLISGGQDKSIKLWD--TNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV 293
           +   LI GG+  ++ +WD    T  + + L     +   LAI+ D++   +  S  N+ V
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN 353
           WD+++  +     GHTD    +D+S   ++ + +   D T++ WDL +G  +    F S 
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTK-LWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226
Query: 354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG 413
             +L +   G+ +  G    N+ +  +       ++  H  + V S+  +  G   +++G
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE-SCVLSLKFAYCGKWFVSTG 284
Query: 414 RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI 469
           +DNL N +           + + + ++ +     IS D+ Y+  GS D    ++ +
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLSCD-----ISVDDKYIVTGSGDKKATVYEV 335

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Query: 223 AHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLYGCLGSVLDLAITHDNRS 281
           AH     SI        ++SG  D ++KLW+  N  +L  T  G    V+ +A    + S
Sbjct: 95  AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 282 VIAASS-SNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSR-HVVSAAYDRTLKVWD 338
             A+      + VW +       TLT G    V  VD   +  + ++++A+ D T+K+WD
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 339 LHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 385
                CV T+  H SN +   F      I SG  DG L++W+  T K+
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Query: 223 AHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLYGCLGSVLDLAITHDNRS 281
           AH     SI        ++SG  D ++KLW+  N  +L  T  G    V+ +A    + S
Sbjct: 95  AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 282 VIAASS-SNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSR-HVVSAAYDRTLKVWD 338
             A+      + VW +       TLT G    V  VD   +  + ++++A+ D T+K+WD
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 339 LHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 385
                CV T+  H SN +   F      I SG  DG L++W+  T K+
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Query: 223 AHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLYGCLGSVLDLAITHDNRS 281
           AH     SI        ++SG  D ++KLW+  N  +L  T  G    V+ +A    + S
Sbjct: 95  AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 282 VIAASS-SNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSR-HVVSAAYDRTLKVWD 338
             A+      + VW +       TLT G    V  VD   +  + ++++A+ D T+K+WD
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 339 LHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 385
                CV T+  H SN +   F      I SG  DG L++W+  T K+
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Query: 223 AHEGGCASILFEYNSARLISGGQDKSIKLWD-TNTGSLSSTLYGCLGSVLDLAITHDNRS 281
           AH     SI        ++SG  D ++KLW+  N  +L  T  G    V+ +A    + S
Sbjct: 95  AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 282 VIAASS-SNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSR-HVVSAAYDRTLKVWD 338
             A+      + VW +       TLT G    V  VD   +  + ++++A+ D T+K+WD
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 339 LHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 385
                CV T+  H SN +   F      I SG  DG L++W+  T K+
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 32/222 (14%)
Query: 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV 282
           AH      + F  +   LIS  QD  +K+W    GS   TL G   +V D+AI    R+V
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 283 IAASSSNNLYVWDVNSGRVRHTLT---GHTDKVCAVDVSKISSR--HVVSAAYDRTLKVW 337
           ++AS    + +W+  +G   HT        D V ++ +   + R  H +S +    L+  
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 253
Query: 338 DLHK----GYCVNTIIFHS----------------NCNALAFSMDGQT---IFSGHIDGN 374
              K    G+    I  H+                +CN+L  ++DG     I++G+ +G 
Sbjct: 254 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL--TVDGNNANYIYAGYENGM 311
Query: 375 LRLWDIQTGKL-LSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           L  WD+++ +  + E   +    + ++  + +G + ++SG D
Sbjct: 312 LAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFD 352

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 32/222 (14%)
Query: 223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV 282
           AH      + F  +   LIS  QD  +K+W    GS   TL G   +V D+AI    R+V
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 283 IAASSSNNLYVWDVNSGRVRHTLT---GHTDKVCAVDVSKISSR--HVVSAAYDRTLKVW 337
           ++AS    + +W+  +G   HT        D V ++ +   + R  H +S +    L+  
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256
Query: 338 DLHK----GYCVNTIIFHS----------------NCNALAFSMDGQT---IFSGHIDGN 374
              K    G+    I  H+                +CN+L  ++DG     I++G+ +G 
Sbjct: 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL--TVDGNNANYIYAGYENGM 314
Query: 375 LRLWDIQTGKL-LSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           L  WD+++ +  + E   +    + ++  + +G + ++SG D
Sbjct: 315 LAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFD 355

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 149/349 (42%), Gaps = 76/349 (21%)
Query: 214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD----TNTG-----SLSSTLY 264
           P   K     H     S+ +  + +   S G D +I L++    T TG     SL +  +
Sbjct: 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238
Query: 265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT---DKVCAVDVSKIS 321
              GSV  L  + D   + +AS+   + +W+V + +V  T+   T   D+   +  +K  
Sbjct: 239 S--GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-- 294
Query: 322 SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWD 379
            + +VS + +  +   +   G  ++ + +  N    AL+ S DG+T+FS   +G++  WD
Sbjct: 295 -QALVSISANGFINFVNPELG-SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD 352
Query: 380 IQTG---KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG----SL 432
           I TG   ++  +V A     +T I  +  G++   S  D+L      + +   G    S 
Sbjct: 353 ISTGISNRVFPDVHA---TMITGIKTTSKGDLFTVSWDDHL------KVVPAGGSGVDSS 403
Query: 433 RATGNRVAS-----------------------------------NWSRSCI--SPDESYV 455
           +A  N+++S                                   +++ SC+  S D+ +V
Sbjct: 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFV 463
Query: 456 AAGSADGSVYIWSISKADI--VRTLKEHTAPVLSCSWSGLGKPLASADK 502
           A G  D  V+++ +S A +  V+T+  H A + S ++S  G  L + D+
Sbjct: 464 AVGGQDSKVHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQ 511

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 27/175 (15%)
Query: 233 FEYNSARLISGGQDKSIKLWDTNT------GSLSSTLYGCLGSVLDLAITHDNRSVIAAS 286
           + +++    S   DK++K+WDTNT       +   T+Y    S     ++  +  V   +
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMS----PVSTKHCLVAVGT 163
Query: 287 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CV 345
               + + D+ SG   H L GH  ++ AV  S      + +A+ D  +K+WD+ +   C+
Sbjct: 164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL 223
Query: 346 NTIIFHSN----------------CNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384
            T+  H+                  N L F+ DG  + +   D  +RLW+   G+
Sbjct: 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 123/289 (42%), Gaps = 26/289 (8%)
Query: 188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDK 247
           K+A    DG VR   +  ++    TV  T +  +N       S+ ++     L+ GG+D 
Sbjct: 31  KVASVSRDGTVRLWSKDDQWLG--TVVYTGQGFLN-------SVCYDSEKELLLFGGKDT 81
Query: 248 SI---KLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 304
            I    L+ T+      TL G  G+V  L+    +  VI+ S      VW    G + + 
Sbjct: 82  XINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVW--KEGSLVYN 137
Query: 305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ 364
           L  H   V    V   S    ++A+ D+T+K+W   K     + I +     LA   DG 
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH 197
Query: 365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR 424
            I S   DG ++L D  TG +L     H  + V  I L  +G+I+ + G D    ++   
Sbjct: 198 FI-SCSNDGLIKLVDXHTGDVLRTYEGHE-SFVYCIKLLPNGDIV-SCGEDRTVRIWSKE 254
Query: 425 SLEVCGSLRATGNRVA-SNWSRSCISPDESYVAAGSADGSVYIWSISKA 472
           +    GSL+      A S WS  C S  +  +  GS+D  V I+S  K+
Sbjct: 255 N----GSLKQVITLPAISIWSVDCXSNGD--IIVGSSDNLVRIFSQEKS 297

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 357 LAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN 416
           LA+S DG +I +G  +G LRLW+ +TG LL+ +  H  A + S+  ++ G  I++   +N
Sbjct: 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR-APIVSVKWNKDGTHIISMDVEN 171
Query: 417 LHNLFDIRSLEVCG--SLRATGNRVASNWSRSCISP---------DESYVAAGSADGSVY 465
           +  L+++ S  V     L+ TG    +  + S             D+ +V  G   G+++
Sbjct: 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-GAIF 230
Query: 466 IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++ I++      L  H  P+    ++   K L SA  +G + +W
Sbjct: 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG----YCVNTIIFHSNC-NALA 358
           TL+GH+ +VC +  +    RH+ S   D  + VW    G      + T   H     A+A
Sbjct: 236 TLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 359 FSMDGQTIFS---GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           +      + +   G  D ++R+W++ +G  LS V AHS   V SI  S     ++ SG  
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI-SGHG 351
Query: 416 NLHN---LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 472
              N   ++   ++     L+   +RV S      +SPD + VA+ +AD ++ +W   + 
Sbjct: 352 FAQNQLVIWKYPTMAKVAELKGHTSRVLS----LTMSPDGATVASAAADETLRLWRCFEL 407
Query: 473 DIVR 476
           D  R
Sbjct: 408 DPAR 411

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG----YCVNTIIFHSNC-NALA 358
           TL+GH+ +VC +  +    RH+ S   D  + VW    G      + T   H     A+A
Sbjct: 225 TLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 359 FSMDGQTIFS---GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           +      + +   G  D ++R+W++ +G  LS V AHS   V SI  S     ++ SG  
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI-SGHG 340
Query: 416 NLHN---LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 472
              N   ++   ++     L+   +RV S      +SPD + VA+ +AD ++ +W   + 
Sbjct: 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLS----LTMSPDGATVASAAADETLRLWRCFEL 396
Query: 473 DIVR 476
           D  R
Sbjct: 397 DPAR 400

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 18/222 (8%)
Query: 265 GCLGSVLDLAITHDNRSVIAASSSN-NLYVWDVNSG----RVRH---TLTGHTDKVCAVD 316
           G    VLD+A    N +VIA+ S +  + VW++  G     +R    TL GHT +V  V 
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 317 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALAFSMDGQTIFSGHIDG 373
               +   ++SA  D  + VWD+  G  V T+   +      ++ +S DG  I +   D 
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN----LFDIRSLEVC 429
            +R+ + + G +++E            ++  S   ILT+G   +      L+D + LE  
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258
Query: 430 GSLRATGNRVASNWSRSCISPDESYVA-AGSADGSVYIWSIS 470
            SL+      +S        PD + V   G  D S+  + I+
Sbjct: 259 LSLQELDT--SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 12/196 (6%)
Query: 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCLGSVLDLAITHDNRSVIAA 285
           GC S    +N   L SG +  +I   D    +    TL G    V  LA   D   + + 
Sbjct: 180 GCLS----WNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG 235
Query: 286 SSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGY 343
            + N + +WD  S   + T T H   V AV      S  + +     D+ +  W+   G 
Sbjct: 236 GNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295
Query: 344 CVNTIIFHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEV--AAHSLAAVTS 399
            VNT+   S   +L +S   + I S H   D NL +W   +  L  +V   AH    + S
Sbjct: 296 RVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS 355
Query: 400 ISLSRSGNIILTSGRD 415
            +LS  G I+ T+  D
Sbjct: 356 -ALSPDGRILSTAASD 370

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 18/222 (8%)
Query: 265 GCLGSVLDLAITHDNRSVIAASSSN-NLYVWDVNSG----RVRH---TLTGHTDKVCAVD 316
           G    VLD+A    N +VIA+ S +  + VW++  G     +R    TL GHT +V  V 
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 317 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALAFSMDGQTIFSGHIDG 373
               +   ++SA  D  + VWD+  G  V T+   +      ++ +S DG  I +   D 
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHN----LFDIRSLEVC 429
            +R+ + + G +++E            ++  S   ILT+G   +      L+D + LE  
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258
Query: 430 GSLRATGNRVASNWSRSCISPDESYVA-AGSADGSVYIWSIS 470
            SL+      +S        PD + V   G  D S+  + I+
Sbjct: 259 LSLQELDT--SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 19/181 (10%)
Query: 304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG----YCVNTIIFHSNC-NALA 358
           TL+GH+ +VC +  +    RH+ S   D  + VW    G      + T   H     A+A
Sbjct: 145 TLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 359 FSMDGQTIFS---GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD 415
           +      + +   G  D ++R+W++ +G  LS V AHS   V SI  S     ++ SG  
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI-SGHG 260
Query: 416 NLHN---LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA 472
              N   ++   ++     L+   +RV S      +SPD + VA+ +AD ++ +W   + 
Sbjct: 261 FAQNQLVIWKYPTMAKVAELKGHTSRVLS----LTMSPDGATVASAAADETLRLWRCFEL 316
Query: 473 D 473
           D
Sbjct: 317 D 317

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 25/230 (10%)
Query: 220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN 279
           K+  HE     + +      L S  +D S  +W +  G    TL G  G++  + +    
Sbjct: 27  KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 280 RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK---- 335
           +  +  S+  ++ +WDV++G+   T       V  V+ S   +  +  A  D  +K    
Sbjct: 87  KYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFL--AILDNVMKNPGS 143
Query: 336 --VWDLHKGYC-----------VNTIIFHSNCNA---LAFSMDGQTIFSGHIDGNLRLWD 379
             ++++ +              ++ II H   +A     +S  G+ I +GH DG +  +D
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203
Query: 380 IQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV 428
           +    + +  +  H   +++ +  S      +TS RD    L D+ +L+V
Sbjct: 204 VSNNYEYVDSIDLHE-KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	510
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.87
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.84
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.84
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.83
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.83
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.82
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.79
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.73
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.73
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.72
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.72
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.7
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.68
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.68
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.68
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.66
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.64
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.6
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.59
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.59
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.59
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.58
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.57
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.57
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.57
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.56
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.55
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.55
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.54
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.53
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.52
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.52
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.49
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.48
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.48
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.44
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.43
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.41
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.38
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.37
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.37
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.36
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.33
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.32
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.32
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.3
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.29
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.29
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.26
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.25
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.25
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.23
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.23
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.2
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.2
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.2
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.2
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.2
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.19
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.18
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.18
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.17
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.15
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.11
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.07
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.04
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.01
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.0
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	98.96
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.96
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.94
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.94
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.94
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.94
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.92
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.9
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.85
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.84
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.83
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.8
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.79
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.78
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.75
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.75
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.71
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.69
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.69
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.69
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.66
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.63
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.62
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.6
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.57
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.53
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.49
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.48
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.45
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.44
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.43
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.4
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.34
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.33
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.32
3ott_A	758	Two-component system sensor histidine kinase; beta	98.31
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.29
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.27
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.18
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.17
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.14
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.13
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.13
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	98.09
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.07
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	98.07
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.06
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.03
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.02
3ott_A	758	Two-component system sensor histidine kinase; beta	98.01
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.0
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.97
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.9
4gdk_C	36	APG16-like 1, autophagy-related protein 16-1; prot	97.88
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.85
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.85
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.83
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.82
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.71
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.66
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.65
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.63
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.61
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.58
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.56
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.55
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.48
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.47
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.43
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.36
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.35
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.33
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.3
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.3
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.19
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.12
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.1
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	97.07
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.91
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.9
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.86
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.83
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.8
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.8
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.74
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	96.64
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.56
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.55
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.5
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.5
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	96.49
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.48
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	96.27
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	96.25
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.12
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.88
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.85
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	95.84
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	95.74
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.71
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.7
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	95.69
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	95.63
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	95.59
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	95.58
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.41
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	95.4
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.4
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.38
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.34
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	95.33
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	95.32
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	95.24
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	95.08
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	95.03
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	95.0
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	94.95
2b5u_A	551	Colicin E3; high resolution colicin E3, ribosome i	94.82
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.46
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	94.19
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	94.11
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.06
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	93.95
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	93.92
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	93.79
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	93.75
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	93.6
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	93.57
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	93.52
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	93.41
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	93.32
3ni0_A	99	Bone marrow stromal antigen 2; coiled-coil, antivi	93.11
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	93.01
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	92.98
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	92.96
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	92.89
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	92.24
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	92.23
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	91.9
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	91.86
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	91.83
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	91.82
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	91.77
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	91.54
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	91.44
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	91.38
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	91.32
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	91.2
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	90.74
2xv5_A	74	Lamin-A/C; structural protein, intermediate filame	90.74
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	90.55
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	90.48
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	90.45
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	90.44
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	90.36
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	90.2
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	89.92
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	89.63
2k48_A	107	Nucleoprotein; viral protein; NMR {Andes virus}	89.55
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	89.19
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	88.98
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	88.94
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	88.84
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	88.77
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	88.33
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	87.98
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	87.97
1zvu_A	716	Topoisomerase IV subunit A; beta-pinwheel, ATPase,	87.55
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.49
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	87.47
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	87.26
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	86.9
2k48_A	107	Nucleoprotein; viral protein; NMR {Andes virus}	86.84
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	86.73
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.68
2avr_X	119	Adhesion A; antiparallel helix-loop-helix, leucine	86.66
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	86.64
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	86.42
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	86.29
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	85.95
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	85.89
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	85.76
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	85.74
2wt7_B	90	Transcription factor MAFB; transcription, transcri	85.69
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	85.52
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	85.22
3ljm_A	31	Coil Ser L9C; de novo design, three stranded coile	85.09
2xnx_M	146	M protein, M1-BC1; cell adhesion, virulence factor	85.07
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	84.75
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	84.72
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	84.49
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	84.48
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	84.26
2p22_A	174	Suppressor protein STP22 of temperature- sensitive	84.05
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	83.81
1gk6_A	59	Vimentin; intermediate filament, dimer, parallel c	83.74
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	83.71
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	83.44
3lay_A	175	Zinc resistance-associated protein; salmonella typ	83.44
3ghg_B	461	Fibrinogen beta chain; triple-stranded coiled coil	82.77
4e61_A	106	Protein BIM1; EB1-like motif, coiled-coil, spindle	82.46
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	82.27
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	82.15
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	82.08
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	81.75
2ic6_A	78	Nucleocapsid protein; hantavirus, bunyaviridae, ss	81.73
2bni_A	34	General control protein GCN4; four helix bundle, a	81.67
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	81.55
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	81.39
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	81.35
3m48_A	33	General control protein GCN4; leucine zipper, synt	81.34
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	81.31
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	80.92
3lay_A	175	Zinc resistance-associated protein; salmonella typ	80.86
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	80.8
3bas_A	89	Myosin heavy chain, striated muscle/general contro	80.75
4fi5_A	113	Nucleoprotein; structural genomics, niaid, nationa	80.7
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	80.67
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	80.52
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	80.35
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	80.1

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.8e-51  Score=396.46  Aligned_cols=288  Identities=25%  Similarity=0.442  Sum_probs=272.7

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      ....+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+.+|.+.|.+++|+|++++|++|+.|+.|++||+
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcE
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                      .+++++..+.+|...|.+++|+| ++.+|++|+.|++|++||+.++.++..+..+. .+.++.++|+|.+|++|+.||.|
T Consensus       180 ~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v  258 (410)
T 1vyh_C          180 QGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  258 (410)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence            99999999999999999999999 88999999999999999999999999888765 49999999999999999999999


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCC--------------------CCEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRS--------------------GNIILTSGRDNLHNLFDIRSLEVCGSLRAT  435 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~--------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  435 (510)
                      ++||++++.....+..|. ..|.+++|+|+                    |.+|++|+.|+.|++||++++..+..+.+|
T Consensus       259 ~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  337 (410)
T 1vyh_C          259 RVWVVATKECKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  337 (410)
T ss_dssp             EEEETTTCCEEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEECCCCceeeEecCCC-ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence            999999999988888877 89999999996                    678999999999999999999999999888


Q ss_pred             CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ...+..    ++|+|+|.+|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||.|++|+
T Consensus       338 ~~~v~~----v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          338 DNWVRG----VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             SSCEEE----EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCcEEE----EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            766554    89999999999999999999999999999999999999999999999999999999999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.1e-49  Score=369.41  Aligned_cols=293  Identities=20%  Similarity=0.328  Sum_probs=268.4

Q ss_pred             CCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEE
Q 010470          213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLY  292 (510)
Q Consensus       213 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  292 (510)
                      .+.....++.+|.++|++++|+|++++|++|+.||.|++||+.++..+..+..|...|.+++|+|+++++++++.|+.|+
T Consensus        43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             ccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCC----eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEE
Q 010470          293 VWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIF  367 (510)
Q Consensus       293 iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~  367 (510)
                      +|++.++.    ....+.+|.+.|.++.|++ + ..+++++.|+.|++||+.++.++..+..+ ..+.+++|+|++.+++
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEE-T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECC-C-CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            99998753    5567889999999999988 3 45899999999999999999999888766 4699999999999999


Q ss_pred             EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC  447 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  447 (510)
                      +|+.||.|++||++++.....+..|. ..|.+++|+|++++|++++.||.|++||++++.....+....  ....+.+++
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~  277 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFTGHE-SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN--IICGITSVS  277 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT--CCSCEEEEE
T ss_pred             EEeCCCcEEEEECCCCeeEEEEcCCc-CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC--cccceEEEE
Confidence            99999999999999999999988877 899999999999999999999999999999988776665332  223456699


Q ss_pred             EcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          448 ISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       448 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |+|+|++|++|+.||.|++||+.+++.+..+.+|.++|.+++|+|+|.+|++|+.||.|++||
T Consensus       278 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.9e-49  Score=365.72  Aligned_cols=288  Identities=21%  Similarity=0.405  Sum_probs=265.6

Q ss_pred             ceeeccccccceEEEEEecC----CCEEEEeeCCCeEEEEeCCCCcc--eecccccccceeEEEEecCCCEEEEEeCCCe
Q 010470          217 CKHKINAHEGGCASILFEYN----SARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLAITHDNRSVIAASSSNN  290 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  290 (510)
                      ....+.+|.++|++++|+|+    +.+|++|+.|++|+||++.++..  ...+.+|...|.+++|+|++.++++++.|+.
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            45667899999999999975    67999999999999999987654  4567899999999999999999999999999


Q ss_pred             EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEe
Q 010470          291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSG  369 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~  369 (510)
                      |++||+.+++.+..+..|...+.+++|+| ++.+|++++.||.|++||+.++.....+..+. .+.+++|+|+|++|++|
T Consensus       104 i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          104 IRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            99999999999999999999999999999 89999999999999999999998888776654 59999999999999999


Q ss_pred             cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470          370 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       370 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                      +.||.|++||+++++.+..+..+. .+|.+++|+|++.+|++++.|+.|++||++++.....+.++...+..    ++|+
T Consensus       183 ~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~----~~~s  257 (321)
T 3ow8_A          183 AIDGIINIFDIATGKLLHTLEGHA-MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN----VAFC  257 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCS-SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEE----EEEC
T ss_pred             cCCCeEEEEECCCCcEEEEEcccC-CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEE----EEEC
Confidence            999999999999999999988876 89999999999999999999999999999999988888877766554    9999


Q ss_pred             CCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          450 PDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       450 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |++.+|++|+.||+|++||+.+++++..+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus       258 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.3e-48  Score=365.86  Aligned_cols=293  Identities=19%  Similarity=0.297  Sum_probs=266.3

Q ss_pred             CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      +.....++.+|.+.|++++|+|++.+|++|+.||+|+|||..+++....+..|...|.+++|+|++.++++++.|+.+++
T Consensus        53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV  132 (354)
T ss_dssp             CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred             ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence            34577889999999999999999999999999999999999999988888899999999999999999999999999999


Q ss_pred             EEcCCC------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcC--CCC
Q 010470          294 WDVNSG------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSM--DGQ  364 (510)
Q Consensus       294 wd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~--~~~  364 (510)
                      |++...      .....+.+|...|.++.|+| ++..|++++.||+|++||+.+++++..+..+. .+.+++|+|  +|+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             EECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             EEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence            998653      24566778999999999999 78899999999999999999999999888764 588999987  578


Q ss_pred             EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470          365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS  444 (510)
Q Consensus       365 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  444 (510)
                      +|++|+.||.|++||+++++.+..+..|. ..|.+++|+|++.+|++++.|+.|++||+++......+..+..  ...+.
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~--~~~~~  288 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQCVQAFETHE-SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI--IFGAS  288 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC--CSCEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCC-CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCc--cccee
Confidence            99999999999999999999999888877 8999999999999999999999999999998877666654322  22345


Q ss_pred             eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       445 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .++|+|+|.+|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||.|++|+
T Consensus       289 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            689999999999999999999999999999999999999999999999999999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-47  Score=355.74  Aligned_cols=287  Identities=18%  Similarity=0.255  Sum_probs=261.0

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      ....+|.+|.+.|++++|+|+|++|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeec-CceeEEEEcC-CCCEEEEecCC
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNCNALAFSM-DGQTIFSGHID  372 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~i~~~~-~~~~l~~~~~d  372 (510)
                      +.+++.+..+.+|...|.+++|+| ++.+|++|+.||+|++||++++ .....+..+ ..|.+++|+| ++..|++|+.|
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            999999999999999999999999 8899999999999999999877 444555555 4599999999 67899999999


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP  450 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  450 (510)
                      |.|++||++++.....+..++...+..+.|+|  ++.+|++++.|+.|++||+++++.+..+.+|...+..    ++|+|
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~----~~~~p  238 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF----AVFHP  238 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE----EEECS
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE----EEECC
Confidence            99999999988877777666557899999987  6789999999999999999999999999888776654    89999


Q ss_pred             CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC--cEEEeeCCCeEE
Q 010470          451 DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK--PLASADKNGVVC  507 (510)
Q Consensus       451 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~  507 (510)
                      ++.+|++|+.||+|++||+.+++.+..+..|...+.+++|+|++.  ++++|+.||.+.
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~  297 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV  297 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence            999999999999999999999999999999999999999999886  577777776543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.4e-48  Score=372.25  Aligned_cols=296  Identities=20%  Similarity=0.342  Sum_probs=263.6

Q ss_pred             CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      ...+..++.+|.+.|++++|+|+|++|++|+.||+|+|||+.++.....+..|...|.+++|+|++++|++|+.|+.+++
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            35578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCC-------eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-----ec-CceeEEEEc
Q 010470          294 WDVNSGR-------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-----FH-SNCNALAFS  360 (510)
Q Consensus       294 wd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~-~~i~~i~~~  360 (510)
                      |++.+..       ....+.+|.+.|.++.|+|.++..|++|+.|++|++||+.++..+..+.     .+ ..+.+++|+
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            9987532       3456789999999999999667789999999999999999999887763     22 458999998


Q ss_pred             C-CCCEEEEecCCCcEEEEECC-CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470          361 M-DGQTIFSGHIDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR  438 (510)
Q Consensus       361 ~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  438 (510)
                      | ++.+|++|+.||.|++||++ .+..+..+..|. ..|.+++|+|++.+|++++.|+.|++||++++..+..+..+...
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~  293 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE-GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR  293 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS-SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC-CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc
Confidence            7 88999999999999999998 456777777776 89999999999999999999999999999999888877654332


Q ss_pred             ---eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc----cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          439 ---VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL----KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       439 ---~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                         ....+.+++|+|+|++|++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|+|.+|++|+.||.|++|+
T Consensus       294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence               1123567999999999999999999999999988877666    67999999999999999999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-46  Score=349.81  Aligned_cols=294  Identities=28%  Similarity=0.495  Sum_probs=269.1

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  294 (510)
                      .....++.+|.++|++++|+|+|++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCC
Q 010470          295 DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDG  373 (510)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg  373 (510)
                      |+.+++.+..+.+|...|.++.|+| ++.++++|+.||.|++||+++++++..+..+ ..+.+++|+|++.+|++|+.||
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            9999999999999999999999999 8899999999999999999999988888766 4699999999999999999999


Q ss_pred             cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      .|++||+++++.+..+......++.+++|+|++++|++++.|+.|++||+++++....+..+....... ......+++.
T Consensus       172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  250 (312)
T 4ery_A          172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGK  250 (312)
T ss_dssp             CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCC-CEEEECSSSC
T ss_pred             cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEE-EEEEEeCCCc
Confidence            999999999998888766655789999999999999999999999999999999988887766543321 1123346889


Q ss_pred             EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEee--CCCeEEEcC
Q 010470          454 YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASAD--KNGVVCVWT  510 (510)
Q Consensus       454 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd  510 (510)
                      +|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++  .||.|++|+
T Consensus       251 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            999999999999999999999999999999999999999999999987  699999995

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-45  Score=344.86  Aligned_cols=287  Identities=23%  Similarity=0.439  Sum_probs=253.4

Q ss_pred             ccceeeccccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCC-----CcceecccccccceeEEEEecCCCEEEEEeCC
Q 010470          215 STCKHKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNT-----GSLSSTLYGCLGSVLDLAITHDNRSVIAASSS  288 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  288 (510)
                      .....++.+|.++|++++|+|++ ++|++|+.|++|++|++..     +.++..+.+|...|.+++|+|++++|++++.|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            34667899999999999999965 8999999999999999864     33466788999999999999999999999999


Q ss_pred             CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCC-----
Q 010470          289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMD-----  362 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~-----  362 (510)
                      ++|++||+.+++.+..+.+|...|.+++|+| ++.++++|+.|++|++||++. .++..+..+ ..+.++.+.|.     
T Consensus        87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-----
T ss_pred             CEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCC
Confidence            9999999999999999999999999999999 889999999999999999974 455555554 55899999985     


Q ss_pred             -CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec
Q 010470          363 -GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS  441 (510)
Q Consensus       363 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  441 (510)
                       +..+++++.||.|++||+++++....+..|. ..|.+++|+|+|.+|++++.||.|++||+.+++.+..+..+.     
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----  238 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-----  238 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTTEEEEEECCCC-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-----
T ss_pred             CccEEEEEeCCCEEEEEECCcchhheeecCCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-----
Confidence             4589999999999999999999888888877 899999999999999999999999999999999888887543     


Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc--------ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          442 NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK--------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       442 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+..++|+|++.+|++++.++ +++|++..+..+..+.        .|...+.+++|+|+|++|++|+.||.|++||
T Consensus       239 ~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          239 EVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             CEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            344599999999999988655 9999998876655443        3567899999999999999999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-45  Score=352.96  Aligned_cols=281  Identities=22%  Similarity=0.433  Sum_probs=249.5

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccccc------------------ceeEEEEecCCCEEEE
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG------------------SVLDLAITHDNRSVIA  284 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~  284 (510)
                      +|.+.|.+++|+|+|++|++|+ ++.+++|++.++..+..+..|..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999987 68999999999988777655432                  4899999999999999


Q ss_pred             EeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcC-CC
Q 010470          285 ASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM-DG  363 (510)
Q Consensus       285 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~-~~  363 (510)
                      |+.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||++++.+...+..+..+.+++|+| ++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC
Confidence            99999999999999999999999999999999999 88999999999999999999999998888888899999999 89


Q ss_pred             CEEEEecCCCcEEEEECCCCceeeeec-------ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce---------
Q 010470          364 QTIFSGHIDGNLRLWDIQTGKLLSEVA-------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE---------  427 (510)
Q Consensus       364 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~---------  427 (510)
                      .+|++|+.||.|++||++++..+..+.       .|. ..|.+++|+|+|.+|++++.|+.|++||+++..         
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  298 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK-DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  298 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCS-SCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC-CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence            999999999999999999998877662       343 789999999999999999999999999997643         


Q ss_pred             ---eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC------CCCcEE
Q 010470          428 ---VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG------LGKPLA  498 (510)
Q Consensus       428 ---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~  498 (510)
                         ....+.+|...+    .+++|+|++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|++      ++++|+
T Consensus       299 ~~~~~~~~~~h~~~v----~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~  374 (393)
T 1erj_A          299 SGTCEVTYIGHKDFV----LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA  374 (393)
T ss_dssp             --CEEEEEECCSSCE----EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred             CCcceEEEecccCcE----EEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEE
Confidence               233444454443    4589999999999999999999999999999999999999999999986      678999


Q ss_pred             EeeCCCeEEEcC
Q 010470          499 SADKNGVVCVWT  510 (510)
Q Consensus       499 s~~~dg~i~iwd  510 (510)
                      +|+.||.|++|+
T Consensus       375 sgs~Dg~i~iW~  386 (393)
T 1erj_A          375 TGSGDCKARIWK  386 (393)
T ss_dssp             EEETTSEEEEEE
T ss_pred             EECCCCcEEECc
Confidence            999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.3e-45  Score=375.26  Aligned_cols=307  Identities=21%  Similarity=0.356  Sum_probs=258.5

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc---
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY---  264 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---  264 (510)
                      .+++++.|+.+++|+..         +.++..++.+|.+.|.+++|+|+|++|++|+.|++|++||+.+++....+.   
T Consensus       162 ~l~s~s~D~~v~lwd~~---------~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~  232 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGP---------PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS  232 (611)
T ss_dssp             EEEEEETTSCEEEEETT---------TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred             EEEEEeCCCeEEEEECC---------CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc
Confidence            37788899999999733         245677899999999999999999999999999999999999998877763   


Q ss_pred             ----ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE-------------------------------------
Q 010470          265 ----GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH-------------------------------------  303 (510)
Q Consensus       265 ----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-------------------------------------  303 (510)
                          +|.+.|.+++|+|++++|++++.|++|++||+.+++...                                     
T Consensus       233 ~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~  312 (611)
T 1nr0_A          233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  312 (611)
T ss_dssp             SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC
Confidence                799999999999999999999999999999998776443                                     


Q ss_pred             ------eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee-----------------------------
Q 010470          304 ------TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-----------------------------  348 (510)
Q Consensus       304 ------~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------------------  348 (510)
                            .+.+|...|.+++|+| ++.+|++++.|+.|++||+.++.+...+                             
T Consensus       313 ~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~  391 (611)
T 1nr0_A          313 LGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK  391 (611)
T ss_dssp             TTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEE
T ss_pred             CCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceE
Confidence                  3457999999999999 8999999999999999999876543221                             


Q ss_pred             ------------------------------------------------------eecCceeEEEEcCCCCEEEEecCCCc
Q 010470          349 ------------------------------------------------------IFHSNCNALAFSMDGQTIFSGHIDGN  374 (510)
Q Consensus       349 ------------------------------------------------------~~~~~i~~i~~~~~~~~l~~~~~dg~  374 (510)
                                                                            .....+.+++|+|+|++|++|+.||.
T Consensus       392 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~  471 (611)
T 1nr0_A          392 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK  471 (611)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCe
Confidence                                                                  00123578999999999999999999


Q ss_pred             EEEEECCCCceee-eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC-ceeeeE--eecCCCeeecCceeEEEcC
Q 010470          375 LRLWDIQTGKLLS-EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS-LEVCGS--LRATGNRVASNWSRSCISP  450 (510)
Q Consensus       375 i~i~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~--~~~~~~~~~~~~~~~~~s~  450 (510)
                      |++||+.++.... ....|. ..|.+++|+|+|++|++++.|+.|++||+.+ ++....  +..|..    .+.+++|+|
T Consensus       472 v~lwd~~~~~~~~~~~~~h~-~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~----~V~~v~fsp  546 (611)
T 1nr0_A          472 VHVYKLSGASVSEVKTIVHP-AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA----KVACVSWSP  546 (611)
T ss_dssp             EEEEEEETTEEEEEEEEECS-SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS----CEEEEEECT
T ss_pred             EEEEEccCCceeeeeccCCC-CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc----ceeEEEECC
Confidence            9999997765321 123344 8899999999999999999999999999987 554432  122433    455699999


Q ss_pred             CCCEEEEEcCCCeEEEEeCCCcc-ee-eccccc-CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          451 DESYVAAGSADGSVYIWSISKAD-IV-RTLKEH-TAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       451 ~~~~l~~~~~dg~i~iwd~~~~~-~~-~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|++|++|+.|++|++|++.++. .. ..+.+| ...|.+++|+|++. |++++.||+|++|+
T Consensus       547 dg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~  608 (611)
T 1nr0_A          547 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN  608 (611)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             CCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence            99999999999999999998865 33 567789 89999999999998 99999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-45  Score=345.00  Aligned_cols=291  Identities=18%  Similarity=0.288  Sum_probs=244.2

Q ss_pred             ccceeecccccc-ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee---cccccccceeEEEEecCCCEEEEEeCCCe
Q 010470          215 STCKHKINAHEG-GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS---TLYGCLGSVLDLAITHDNRSVIAASSSNN  290 (510)
Q Consensus       215 ~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  290 (510)
                      ..+..++.+|.+ .|.+++|+|+|++|++|+.|++|+|||+.++....   ...+|...|.+++|+|++++|++++.|+.
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            356788999988 99999999999999999999999999998775432   23689999999999999999999999999


Q ss_pred             EEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe---Eeeeeeec-CceeEEEEcCCCC
Q 010470          291 LYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY---CVNTIIFH-SNCNALAFSMDGQ  364 (510)
Q Consensus       291 i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~-~~i~~i~~~~~~~  364 (510)
                      |++|++.++.  ++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++.   ++..+..+ ..+.+++|+|++.
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            9999998764  5778899999999999999 89999999999999999998763   34444444 4599999999999


Q ss_pred             EEEEecCCCcEEEEECCCCce--eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc---------------e
Q 010470          365 TIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL---------------E  427 (510)
Q Consensus       365 ~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~---------------~  427 (510)
                      +|++|+.||.|++||.+++..  ...+..|. ..|.+++|+|+|++|++++.|+.|++||....               .
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~-~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHE-STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCC-CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence            999999999999999987753  45666666 89999999999999999999999999997422               1


Q ss_pred             eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce---------eecccccCcCEEEEEEeCCCC-cE
Q 010470          428 VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI---------VRTLKEHTAPVLSCSWSGLGK-PL  497 (510)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~-~l  497 (510)
                      .+..+..   .....+..++|+|++..|++++.|+.|++|+...+..         .....+|...|++++|+|++. +|
T Consensus       243 ~~~~~~~---~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  319 (345)
T 3fm0_A          243 CICTLSG---FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL  319 (345)
T ss_dssp             EEEEECS---SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred             eeEEecC---CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence            1222222   1223455699999999999999999999999875431         123457999999999999985 89


Q ss_pred             EEeeCCCeEEEcC
Q 010470          498 ASADKNGVVCVWT  510 (510)
Q Consensus       498 ~s~~~dg~i~iwd  510 (510)
                      ++|+.||.|++|+
T Consensus       320 aS~s~Dg~v~~W~  332 (345)
T 3fm0_A          320 ASCSDDGEVAFWK  332 (345)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEcCCCCcEEEEE
Confidence            9999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.8e-45  Score=342.37  Aligned_cols=287  Identities=25%  Similarity=0.405  Sum_probs=243.0

Q ss_pred             ccceeeccccccceEEEEE-----ec-CCCEEEEeeCCCeEEEEeCCCC-------cceecccccccceeEEEEecCCCE
Q 010470          215 STCKHKINAHEGGCASILF-----EY-NSARLISGGQDKSIKLWDTNTG-------SLSSTLYGCLGSVLDLAITHDNRS  281 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~  281 (510)
                      ..+...+.+|.+.|++++|     ++ ++.+|++|+.|++|++||+.++       .....+.+|...|.+++|+|++.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            3467789999999999999     76 8999999999999999998753       345678899999999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee---eecCceeEEE
Q 010470          282 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI---IFHSNCNALA  358 (510)
Q Consensus       282 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~i~~i~  358 (510)
                      +++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+.........   .....+.+++
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence            99999999999999999999999999999999999999 8899999999999999999744332222   1234599999


Q ss_pred             EcCCC----------CEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC-ce
Q 010470          359 FSMDG----------QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS-LE  427 (510)
Q Consensus       359 ~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-~~  427 (510)
                      |+|++          .+|++++.||.|++|| ..+.....+..|. ..|.+++|+|+|++|++++.|+.|++||+.. ..
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHE-SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCS-SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcc-ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence            99987          7899999999999999 4566667777776 8999999999999999999999999999954 33


Q ss_pred             eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee--ccc-----------ccCcCEEEEEEeCCC
Q 010470          428 VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR--TLK-----------EHTAPVLSCSWSGLG  494 (510)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~v~~~~~~~~~  494 (510)
                      ....+. +..    .+..++|+|++.++++|+ |+.|++|++.+++...  .+.           +|...|.+++|+|+|
T Consensus       248 ~~~~~~-~~~----~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  321 (343)
T 2xzm_R          248 PQREFD-AGS----TINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG  321 (343)
T ss_dssp             CSEEEE-CSS----CEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred             cceeec-CCC----cEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence            333332 222    345699999999887665 7779999998766543  332           688899999999999


Q ss_pred             CcEEEeeCCCeEEEcC
Q 010470          495 KPLASADKNGVVCVWT  510 (510)
Q Consensus       495 ~~l~s~~~dg~i~iwd  510 (510)
                      ++|++|+.||.|++|+
T Consensus       322 ~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          322 KKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             CCEEEEETTSEEEEEE
T ss_pred             CeEEEecCCceEEEEE
Confidence            9999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.5e-45  Score=343.12  Aligned_cols=280  Identities=21%  Similarity=0.278  Sum_probs=235.3

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-----------CcceecccccccceeEEEEecCCCEEEEEeCCCeE
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-----------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNL  291 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  291 (510)
                      .|...|.+++|+|||.+|++++ |+++++||...           .........+...|.+++|+|++ .|++|+.||.|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence            5777899999999999999887 67788876321           11111223456789999999985 68899999999


Q ss_pred             EEEEcCCCCeeEe----ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCC-E
Q 010470          292 YVWDVNSGRVRHT----LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-T  365 (510)
Q Consensus       292 ~iwd~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~-~  365 (510)
                      +|||+.+++....    +.+|.+.|++++|+| ++.+|++|+.||+|++||+.+++++..+..| ..|.+++|+|++. +
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence            9999999875543    458999999999999 8999999999999999999999999999876 4599999999885 7


Q ss_pred             EEEecCCCcEEEEECCCCceeeeeccc-ccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470          366 IFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW  443 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  443 (510)
                      |++|+.||.|++||+++++....+... +...+.+++|+|+ +.+|++|+.||.|++||+++++.+..+..|...+..  
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~--  262 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG--  262 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEE--
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEE--
Confidence            889999999999999999988877543 2257899999995 568899999999999999999999999888776654  


Q ss_pred             eeEEEcCCC-CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc-EEEeeCCCeEEEcC
Q 010470          444 SRSCISPDE-SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP-LASADKNGVVCVWT  510 (510)
Q Consensus       444 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd  510 (510)
                        ++|+|+| ++|++|+.||+|+|||+.+++++ .+.+|.+.|++++|+|++.. |++||.||.|++|+
T Consensus       263 --v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          263 --LVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             --EEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             --EEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence              9999998 57999999999999999988765 46789999999999999875 66899999999995

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.6e-45  Score=347.65  Aligned_cols=282  Identities=19%  Similarity=0.249  Sum_probs=237.4

Q ss_pred             cccccceEEEEEecCCCEEEEeeC------CCeEEEEeCCCCcceec----ccccccceeEEEEecCCCEEEEEeCCCeE
Q 010470          222 NAHEGGCASILFEYNSARLISGGQ------DKSIKLWDTNTGSLSST----LYGCLGSVLDLAITHDNRSVIAASSSNNL  291 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  291 (510)
                      .+|.+.|++++|||||++|++|+.      |+.|++|+..++.....    ..+|...|++++|+|++. +++++.||.|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence            479999999999999999999997      78899999887765433    346888999999999975 5678889999


Q ss_pred             EEEEcCCCCeeE----eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCC-E
Q 010470          292 YVWDVNSGRVRH----TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-T  365 (510)
Q Consensus       292 ~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~-~  365 (510)
                      ++||+.+++...    ...+|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+..+ ..+++++|+|++. +
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~  196 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI  196 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence            999998876432    3457999999999999 8899999999999999999999999998776 4599999999875 7


Q ss_pred             EEEecCCCcEEEEECCCCceeeeeccc-ccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470          366 IFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW  443 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  443 (510)
                      +++++.||.|++||+++++....+... +...+.+++|+|+ +.+|++++.|+.|++||+++++....+..+...+..  
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~--  274 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG--  274 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE--
T ss_pred             eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEE--
Confidence            889999999999999998877665432 3367999999997 468889999999999999999998888877766554  


Q ss_pred             eeEEEcCCC-CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC-CCCcEEEeeCCCeEEEcC
Q 010470          444 SRSCISPDE-SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG-LGKPLASADKNGVVCVWT  510 (510)
Q Consensus       444 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd  510 (510)
                        ++|+|++ ++|++|+.||+|+|||+.+++++..+ +|.+.|++++|+| ++.+|++|+.||.|++|+
T Consensus       275 --l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          275 --LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             --EEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             --EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence              9999987 57999999999999999999887765 6999999999998 788999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.1e-44  Score=364.26  Aligned_cols=288  Identities=21%  Similarity=0.332  Sum_probs=247.6

Q ss_pred             ceeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          217 CKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      +...+.+|.+.|++++|+|++. .|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus       139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd  218 (611)
T 1nr0_A          139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN  218 (611)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence            4557889999999999999987 599999999999999999998899999999999999999999999999999999999


Q ss_pred             cCCCCeeEeec-------CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-------------------
Q 010470          296 VNSGRVRHTLT-------GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-------------------  349 (510)
Q Consensus       296 ~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------  349 (510)
                      +.+++....+.       +|.+.|.+++|+| ++.+|++++.|++|++||+.+++++..+.                   
T Consensus       219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (611)
T 1nr0_A          219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL  297 (611)
T ss_dssp             TTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred             CCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence            99999888874       7999999999999 88999999999999999999887665442                   


Q ss_pred             ------------------------ec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc-------------
Q 010470          350 ------------------------FH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA-------------  391 (510)
Q Consensus       350 ------------------------~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------  391 (510)
                                              .| ..|.+++|+|+|++|++++.||.|++||+.++.....+..             
T Consensus       298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~  377 (611)
T 1nr0_A          298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS  377 (611)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred             EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC
Confidence                                    22 3589999999999999999999999999987654322100             


Q ss_pred             --------------------------------------------------------------------cccccEEEEEEc
Q 010470          392 --------------------------------------------------------------------HSLAAVTSISLS  403 (510)
Q Consensus       392 --------------------------------------------------------------------~~~~~i~~i~~~  403 (510)
                                                                                          .+...+.+++|+
T Consensus       378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s  457 (611)
T 1nr0_A          378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS  457 (611)
T ss_dssp             TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred             CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence                                                                                001346789999


Q ss_pred             CCCCEEEEEecCCcEEEEEcCCceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeec--c
Q 010470          404 RSGNIILTSGRDNLHNLFDIRSLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRT--L  478 (510)
Q Consensus       404 ~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~  478 (510)
                      |+|++|++++.|+.|++||+.++...  .. ..+...    +.+++|+|+|++|++++.|++|++|++.+ ++....  +
T Consensus       458 pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~----v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~  532 (611)
T 1nr0_A          458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAE----ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW  532 (611)
T ss_dssp             TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSC----EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC
T ss_pred             CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCc----eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeee
Confidence            99999999999999999999876432  22 334433    45599999999999999999999999987 666554  3


Q ss_pred             cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          479 KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       479 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..|...|.+++|+|+|++|++|+.||.|++||
T Consensus       533 ~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          533 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence            45999999999999999999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-44  Score=334.46  Aligned_cols=287  Identities=15%  Similarity=0.236  Sum_probs=233.4

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC--cceecc-cc-cccceeEEEEecCCCEEEEEeCCCe
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTL-YG-CLGSVLDLAITHDNRSVIAASSSNN  290 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~  290 (510)
                      ..+..++.+|.++|.+++|+|+  +|++|+.|+.|++||+.++  .....+ .+ |...|.+++|+|++++|++++.|+.
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            3467789999999999999987  9999999999999999875  334444 34 9999999999999999999999999


Q ss_pred             EEEEEcCC-------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC----eEeeeeeec-CceeEEE
Q 010470          291 LYVWDVNS-------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG----YCVNTIIFH-SNCNALA  358 (510)
Q Consensus       291 i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-~~i~~i~  358 (510)
                      |++||+..       .+....+.+|...|.+++|+| ++.+|++|+.|++|++||+...    .++..+..+ ..|.+++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            99999853       346677889999999999999 8899999999999999999432    455666555 4599999


Q ss_pred             EcCCCCEEEEecCCCcEEEEECCCC--ceeeeecccccccEEEEEEcCC--CCEEEEEecCCcEEEEEcCCc--------
Q 010470          359 FSMDGQTIFSGHIDGNLRLWDIQTG--KLLSEVAAHSLAAVTSISLSRS--GNIILTSGRDNLHNLFDIRSL--------  426 (510)
Q Consensus       359 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~--------  426 (510)
                      |+|++.+|++|+.||.|++||..++  +++..+..|. ..|.+++|+|+  +.+|++++.|+.|++||+.++        
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~  239 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE-GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW  239 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC-CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence            9999999999999999999998776  5677777776 89999999998  778999999999999998754        


Q ss_pred             eeeeEeec-CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc--eee-cccccCc-CEEEEEEeC--CCCcEEE
Q 010470          427 EVCGSLRA-TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD--IVR-TLKEHTA-PVLSCSWSG--LGKPLAS  499 (510)
Q Consensus       427 ~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~-~~~~~~~-~v~~~~~~~--~~~~l~s  499 (510)
                      .....+.. +..    .+..++|++++ +|++++.||.|++|+..++.  .+. .+.+|.. .|.+++|+|  ++++|++
T Consensus       240 ~~~~~~~~~h~~----~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las  314 (330)
T 2hes_X          240 VCEAILPDVHKR----QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT  314 (330)
T ss_dssp             EEEEECCSCCSS----CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred             EEeeeccccccc----ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence            22333322 333    34558999765 88999999999999988763  332 3456876 899999999  6889999


Q ss_pred             eeCCCeEEEcC
Q 010470          500 ADKNGVVCVWT  510 (510)
Q Consensus       500 ~~~dg~i~iwd  510 (510)
                      |+.||.|++||
T Consensus       315 ~s~Dg~v~~W~  325 (330)
T 2hes_X          315 GGDDGIVNFWS  325 (330)
T ss_dssp             EETTSEEEEEE
T ss_pred             ecCCCcEEEEE
Confidence            99999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.8e-43  Score=356.95  Aligned_cols=301  Identities=28%  Similarity=0.481  Sum_probs=268.3

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL  267 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  267 (510)
                      .+++++.|+.+++|+..          ......+.+|.+.|.+++|+|++.+|++++.||.|++||... ..+..+.+|.
T Consensus       276 ~l~~~~~d~~i~~w~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~  344 (577)
T 2ymu_A          276 TIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHS  344 (577)
T ss_dssp             EEEEEETTSCEEEEETT----------SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCS
T ss_pred             EEEEEeCCCEEEEEeCC----------CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCC
Confidence            35566777888888632          345677889999999999999999999999999999999864 4456778899


Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  347 (510)
                      ..|.+++|+|+++++++++.|+.|++||. +++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||. +++.+..
T Consensus       345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~  421 (577)
T 2ymu_A          345 SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQT  421 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEE
Confidence            99999999999999999999999999994 5788889999999999999999 8899999999999999996 5666666


Q ss_pred             eeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470          348 IIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       348 ~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~  426 (510)
                      +..+ ..+.+++|+|++++|++++.|+.|++||. +++.+..+..+. ..|.+++|+|++++|++++.|+.|++||. ++
T Consensus       422 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~-~~v~~~~~spd~~~las~~~d~~i~iw~~-~~  498 (577)
T 2ymu_A          422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR-NG  498 (577)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCS-SCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred             ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence            6655 56999999999999999999999999996 677777887776 89999999999999999999999999995 67


Q ss_pred             eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                      +.+..+.+|...+.    +++|+|+|++|++++.||.|++||. +++++..+.+|.++|++++|+|||++|++++.||.|
T Consensus       499 ~~~~~~~~h~~~v~----~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i  573 (577)
T 2ymu_A          499 QLLQTLTGHSSSVR----GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV  573 (577)
T ss_dssp             CEEEEEECCSSCEE----EEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             CEEEEEeCCCCCEE----EEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence            77888888776654    4999999999999999999999995 688889999999999999999999999999999999


Q ss_pred             EEcC
Q 010470          507 CVWT  510 (510)
Q Consensus       507 ~iwd  510 (510)
                      ++||
T Consensus       574 ~~Wd  577 (577)
T 2ymu_A          574 KLWN  577 (577)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9998

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-43  Score=333.82  Aligned_cols=286  Identities=19%  Similarity=0.351  Sum_probs=259.5

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      ....+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            45668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCeE-----------eeeeeec-C--ceeEE
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGYC-----------VNTIIFH-S--NCNAL  357 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~-~--~i~~i  357 (510)
                      .+++.+..+. +...|.++.|+| ++.++++++.+     |.|.+||+..+..           ...+..+ .  .+.++
T Consensus       104 ~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          104 SNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             CCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            9999998888 889999999999 88999999988     9999999876532           2222222 2  69999


Q ss_pred             EEcCCCCEEEEecCCCcEEEEECCC-CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470          358 AFSMDGQTIFSGHIDGNLRLWDIQT-GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG  436 (510)
Q Consensus       358 ~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  436 (510)
                      +|+|++++|++++.||.|++||+++ +..+..+..+. ..|.+++|+|++.+|++++.|+.|++||+++++....+... 
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-  259 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE-KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD-  259 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC-CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC-
Confidence            9999999999999999999999998 67777777776 89999999999999999999999999999999988887733 


Q ss_pred             CeeecCceeEEEcCCCCEEEEEcCCC--------------eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470          437 NRVASNWSRSCISPDESYVAAGSADG--------------SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       437 ~~~~~~~~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  502 (510)
                      .    .+..++|+|++.++++++.++              .+++||+.+++.+..+.+|...|.+++|+|++++|++++.
T Consensus       260 ~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  335 (369)
T 3zwl_B          260 C----PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE  335 (369)
T ss_dssp             S----CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             C----CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence            2    334589999999999999888              8999999999999999999999999999999999999999


Q ss_pred             CCeEEEcC
Q 010470          503 NGVVCVWT  510 (510)
Q Consensus       503 dg~i~iwd  510 (510)
                      ||.|++|+
T Consensus       336 dg~v~iw~  343 (369)
T 3zwl_B          336 DGFIRLHH  343 (369)
T ss_dssp             TSEEEEEE
T ss_pred             CCeEEEEE
Confidence            99999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.4e-43  Score=325.71  Aligned_cols=270  Identities=17%  Similarity=0.282  Sum_probs=249.0

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL  267 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  267 (510)
                      .+++++.|+.+++|+....       .......+.+|...|.+++|++++.++++|+.|++|++||+.+++.+..+..|.
T Consensus        50 ~l~tgs~D~~v~vW~~~~~-------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~  122 (321)
T 3ow8_A           50 TVVTGSLDDLVKVWKWRDE-------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP  122 (321)
T ss_dssp             EEEEEETTSCEEEEEEETT-------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             EEEEEcCCCCEEEEECCCC-------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC
Confidence            4788999999999985431       123456789999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  347 (510)
                      ..+.+++|+|++++|++++.||.|++|++.+++....+..|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..
T Consensus       123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~  201 (321)
T 3ow8_A          123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHT  201 (321)
T ss_dssp             TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            9999999999999999999999999999999999999999999999999999 899999999999999999999999988


Q ss_pred             eeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470          348 IIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       348 ~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~  426 (510)
                      +..+ ..+.+++|+|++.+|++|+.||.|++||++++.....+..|. ..|.+++|+|++.+|++++.|+.|++||+.++
T Consensus       202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA-SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            8766 469999999999999999999999999999999998888877 89999999999999999999999999999999


Q ss_pred             eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      +.+..+..+...+.    .++|+|+|.+|++++.||.|++||+.
T Consensus       281 ~~~~~~~~h~~~v~----~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          281 TCVHTFFDHQDQVW----GVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEEECCCSSCEE----EEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEEEcCCCCcEE----EEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999888776654    49999999999999999999999964

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.6e-42  Score=324.73  Aligned_cols=287  Identities=23%  Similarity=0.410  Sum_probs=249.5

Q ss_pred             cceeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCc-----ceecccccccceeEEEEecCCCEEEEEeCCC
Q 010470          216 TCKHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNTGS-----LSSTLYGCLGSVLDLAITHDNRSVIAASSSN  289 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  289 (510)
                      ....+|+||.+.|++|+|+|+ +++|+|||.||+|+|||+.++.     +...+.+|...|.+++|+|++++|++++.|+
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            466789999999999999997 6899999999999999987654     3566789999999999999999999999999


Q ss_pred             eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-e-cCceeEEEEcCCC--CE
Q 010470          290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-F-HSNCNALAFSMDG--QT  365 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-~~~i~~i~~~~~~--~~  365 (510)
                      .|++|+............+...+....+++ .+.+|++++.|+.+++||+.......... . ...+.+++|++++  .+
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            999999999988888888899999999988 78899999999999999998665443322 2 2458889998754  57


Q ss_pred             EEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470          366 IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR  445 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  445 (510)
                      +++++.|+.|++||+++++.+..+..+. ..|++++|+|++++|++++.|+.|++||+++.+.+..+..+..     +..
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-----v~~  261 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIGHT-GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-----INA  261 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC-----EEE
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecCCC-CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce-----EEe
Confidence            8899999999999999999999888877 8999999999999999999999999999999998888776542     345


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc---------cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          446 SCISPDESYVAAGSADGSVYIWSISKADIVRTL---------KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++|+|++.+++ ++.|+.|++||+.++..+..+         .+|...|++++|+|+|++|++|+.||.|+|||
T Consensus       262 ~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          262 LCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             EEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            88999887665 556999999999887665544         35888999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-43  Score=338.79  Aligned_cols=268  Identities=23%  Similarity=0.412  Sum_probs=247.3

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.||.+++|+...         ..+..++.+|.+.|.+++|+|+|++|++|+.||+|++||+.+++.+..+.+|
T Consensus       121 ~~l~s~s~Dg~i~vwd~~~---------~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  191 (410)
T 1vyh_C          121 SVMVSASEDATIKVWDYET---------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH  191 (410)
T ss_dssp             SEEEEEESSSCEEEEETTT---------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCC
T ss_pred             CEEEEEeCCCeEEEEECCC---------CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC
Confidence            4567888899999998543         3456788999999999999999999999999999999999999999999999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      ...|.+++|+|++.+|++|+.|+.|++||+.++.++..+.+|...|.++.++| ++.++++|+.||.|++||+.++.+..
T Consensus       192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~  270 (410)
T 1vyh_C          192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKA  270 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceee
Confidence            99999999999999999999999999999999999999999999999999999 88999999999999999999999888


Q ss_pred             eeeec-CceeEEEEcCC--------------------CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCC
Q 010470          347 TIIFH-SNCNALAFSMD--------------------GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS  405 (510)
Q Consensus       347 ~~~~~-~~i~~i~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~  405 (510)
                      .+..+ ..+.+++|+|+                    |.+|++|+.||.|++||++++..+..+..|. ..|.+++|+|+
T Consensus       271 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~  349 (410)
T 1vyh_C          271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSG  349 (410)
T ss_dssp             EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEECSS
T ss_pred             EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC-CcEEEEEEcCC
Confidence            88666 45999999996                    6789999999999999999999999998876 89999999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          406 GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      |.+|++++.|+.|++||+.+++.+..+..|...+..    ++|+|++.+|++|+.||+|+||++
T Consensus       350 g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~----l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS----LDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEE----EEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEE----EEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999998888888766554    999999999999999999999986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.7e-43  Score=337.68  Aligned_cols=286  Identities=16%  Similarity=0.225  Sum_probs=257.3

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc------ceecccccccceeEEEEecC----C---CEE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS------LSSTLYGCLGSVLDLAITHD----N---RSV  282 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l  282 (510)
                      .....+.+|.++|++++|+|  ++|++|+.||.|++||+.++.      .+..+.+|...|.+++|+|+    +   .+|
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            35677899999999999998  799999999999999999887      67888899999999999999    9   999


Q ss_pred             EEEeCCCeEEEEEcCCCCe-----eEeecCC-----CCceEEEEEe----cCCCCE-EEEEeCCCcEEEEECCC------
Q 010470          283 IAASSSNNLYVWDVNSGRV-----RHTLTGH-----TDKVCAVDVS----KISSRH-VVSAAYDRTLKVWDLHK------  341 (510)
Q Consensus       283 ~~~~~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~i~~~----~~~~~~-l~s~~~dg~i~iwd~~~------  341 (510)
                      ++++.||.|++||+.+++.     ...+..|     ...|.+++|+    | ++.+ |++++.||.|++||+.+      
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccc
Confidence            9999999999999998887     8888888     5999999999    8 7888 99999999999999988      


Q ss_pred             CeEee-----eeee--------cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc---c---ccccEEEEEE
Q 010470          342 GYCVN-----TIIF--------HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA---H---SLAAVTSISL  402 (510)
Q Consensus       342 ~~~~~-----~~~~--------~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~~i~~i~~  402 (510)
                      +..+.     .+..        ...+.+++|+|++ ++++|+.||.|++||+++++.+..+..   +   . ..|.+++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~-~~i~~i~~  241 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS-NSIRSVKF  241 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC-CCEEEEEE
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC-CccceEEE
Confidence            66555     5543        4569999999999 999999999999999999999988887   5   4 89999999


Q ss_pred             cCCCCEEEEEecC---CcEEEEEcCCceeeeEeec-------------CCCeeecCceeEEEcCCCCEEEEEcCCCeEEE
Q 010470          403 SRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRA-------------TGNRVASNWSRSCISPDESYVAAGSADGSVYI  466 (510)
Q Consensus       403 ~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i  466 (510)
                      +|++.+|++++.|   +.|++||+++++.+..+..             +...    +.+++|+|++++|++++.||.|++
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW----VMSLSFNDSGETLCSAGWDGKLRF  317 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC----EEEEEECSSSSEEEEEETTSEEEE
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc----EEEEEECCCCCEEEEEeCCCeEEE
Confidence            9999999999999   9999999999998888876             4444    445999999999999999999999


Q ss_pred             EeCCCcceeeccc------cc---------------CcCEEEEEEeCCC----------CcEEEeeCCCeEEEcC
Q 010470          467 WSISKADIVRTLK------EH---------------TAPVLSCSWSGLG----------KPLASADKNGVVCVWT  510 (510)
Q Consensus       467 wd~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~l~s~~~dg~i~iwd  510 (510)
                      ||+.+++.+..+.      .|               ..+|.+++|+|++          ++|++++.||.|++||
T Consensus       318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            9999999999988      77               9999999999998          7999999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.1e-41  Score=316.92  Aligned_cols=281  Identities=17%  Similarity=0.309  Sum_probs=249.4

Q ss_pred             eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-----ccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470          220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-----GCLGSVLDLAITHDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  294 (510)
                      ...+|.+.|++++|+|++++|++++ ||.|++||+.++.....+.     +|...|.+++|+|+++++++++.||.|++|
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            3458999999999999999999999 9999999998776433332     789999999999999999999999999999


Q ss_pred             EcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecC
Q 010470          295 DVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       295 d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~  371 (510)
                      |+.+++  ....+..|...|.+++|+| ++.++++++.||.|++||+++++.+..+..+ ..+.+++|+|++++|++++.
T Consensus       125 d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  203 (337)
T 1gxr_A          125 DLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence            999887  6677888999999999999 8899999999999999999999988888765 56999999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      ||.|++||+++++.+..+...  ..+.+++|+|++.++++++.++.|++||+.++... .+..+...    +..++|+|+
T Consensus       204 dg~i~~~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~----v~~~~~~~~  276 (337)
T 1gxr_A          204 DNTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESC----VLSLKFAYC  276 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSC----EEEEEECTT
T ss_pred             CCcEEEEECCCCceEeeecCC--CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccc----eeEEEECCC
Confidence            999999999999888777543  78999999999999999999999999999987754 34444443    445999999


Q ss_pred             CCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          452 ESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|+
T Consensus       277 ~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          277 GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            999999999999999999998887544 4888999999999999999999999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-42  Score=337.37  Aligned_cols=314  Identities=18%  Similarity=0.262  Sum_probs=268.6

Q ss_pred             HhhhhcCCceEEeccc----cccc-------ccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC
Q 010470          188 KLAKQQVDGVVRRSEE----GAEF-------FAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT  256 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  256 (510)
                      .+++++.||.+++|+.    ....       ......+........+|.+.|++++|+|++++|++|+.||.|++|| .+
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~  138 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KT  138 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TT
T ss_pred             EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CC
Confidence            5778888999999986    3211       0000111111122334788999999999999999999999999999 66


Q ss_pred             CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCc---------------eEEEEEecCC
Q 010470          257 GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK---------------VCAVDVSKIS  321 (510)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------v~~i~~~~~~  321 (510)
                      +..+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...               +.++.|+|  
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  216 (425)
T 1r5m_A          139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD--  216 (425)
T ss_dssp             SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE--
T ss_pred             CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC--
Confidence            7888889999999999999999999999999999999999999999988888777               99999998  


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEE
Q 010470          322 SRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSI  400 (510)
Q Consensus       322 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i  400 (510)
                      +..+++++.+|.|++||+.++..+..+..+ ..+.+++|+|++++|++++.||.|++||+++++.+..+..+. ..+.++
T Consensus       217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~~  295 (425)
T 1r5m_A          217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS-QSIVSA  295 (425)
T ss_dssp             TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCS-SCEEEE
T ss_pred             CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCC-ccEEEE
Confidence            366889999999999999999888777655 569999999999999999999999999999999888887776 899999


Q ss_pred             EEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-------
Q 010470          401 SLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-------  473 (510)
Q Consensus       401 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------  473 (510)
                      +|+|++ ++++++.|+.|++||+++++....+..+...+.    .++|+|++++|++++.||.|++||+.++.       
T Consensus       296 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~----~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  370 (425)
T 1r5m_A          296 SWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF----AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY  370 (425)
T ss_dssp             EEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE----EEEECTTSSEEEEEETTSCEEEEECHHHHC------
T ss_pred             EECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE----EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee
Confidence            999999 999999999999999999999888887766554    48999999999999999999999999888       


Q ss_pred             -------------eeecccccCc--CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          474 -------------IVRTLKEHTA--PVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       474 -------------~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                                   ++..+..|..  .|++++|+|++++|++++.||.|++||
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          371 GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             --------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             cccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence                         8888998876  999999999999999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.8e-42  Score=353.66  Aligned_cols=286  Identities=27%  Similarity=0.452  Sum_probs=248.1

Q ss_pred             ceeeccccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCCCc-----ceecccccccceeEEEEecCCCEEEEEeCCCe
Q 010470          217 CKHKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGS-----LSSTLYGCLGSVLDLAITHDNRSVIAASSSNN  290 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  290 (510)
                      ....+.+|.+.|++++|+|++ ++|+||+.||+|++|++.+..     ....+.+|...|.+++|+|++++|++|+.||.
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            455788999999999999864 799999999999999997643     34567899999999999999999999999999


Q ss_pred             EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee----ecCceeEEEEcCCC--C
Q 010470          291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII----FHSNCNALAFSMDG--Q  364 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~i~~i~~~~~~--~  364 (510)
                      |++||+.++.....+.+|...|.+++|+| ++.+|++|+.|++|++||+..........    +...+.+++|+|++  .
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            99999999999999999999999999999 88999999999999999987554333221    22349999999987  6


Q ss_pred             EEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470          365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS  444 (510)
Q Consensus       365 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  444 (510)
                      .+++|+.||.|++||+++++....+..|. +.|++++|+|++++|++++.||.|++||+++++.+..+..+.     .+.
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~-----~v~  606 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAGHT-GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-----VIH  606 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS-----CEE
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC-----cEE
Confidence            89999999999999999999988888887 899999999999999999999999999999998877665432     345


Q ss_pred             eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc-------------------CcCEEEEEEeCCCCcEEEeeCCCe
Q 010470          445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH-------------------TAPVLSCSWSGLGKPLASADKNGV  505 (510)
Q Consensus       445 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~s~~~dg~  505 (510)
                      +++|+|++.++++++ ++.|+|||+.++..+..+..+                   ...+++++|+|+|++|++|+.||.
T Consensus       607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~  685 (694)
T 3dm0_A          607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV  685 (694)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence            699999999988876 455999999998877665432                   123789999999999999999999


Q ss_pred             EEEcC
Q 010470          506 VCVWT  510 (510)
Q Consensus       506 i~iwd  510 (510)
                      |++||
T Consensus       686 i~iW~  690 (694)
T 3dm0_A          686 IRVWG  690 (694)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.8e-41  Score=342.31  Aligned_cols=301  Identities=29%  Similarity=0.500  Sum_probs=268.0

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL  267 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  267 (510)
                      .+++++.|+.+++|+..          ......+.+|...|++++|+|++..|++++.|+.|++||.. ++....+.+|.
T Consensus       235 ~l~~~~~d~~i~~w~~~----------~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~  303 (577)
T 2ymu_A          235 TIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS  303 (577)
T ss_dssp             CEEEEETTSCEEEECTT----------SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCS
T ss_pred             EEEEEeCCCEEEEEeCC----------CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCC
Confidence            45667788889988743          34667889999999999999999999999999999999975 66777888999


Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  347 (510)
                      ..|.+++|+|++.++++++.|+.|++||+. +..+..+.+|...|.+++|+| ++.++++++.||.|++||. ++..+..
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~  380 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQT  380 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence            999999999999999999999999999975 556677889999999999999 8899999999999999996 5666777


Q ss_pred             eeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470          348 IIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       348 ~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~  426 (510)
                      +..+ ..+.+++|+|+|++|++++.|+.|++||. +++.+..+..+. ..|.+++|+|++++|++++.|+.|++||. ++
T Consensus       381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~  457 (577)
T 2ymu_A          381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVWGVAFSPDDQTIASASDDKTVKLWNR-NG  457 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEET-TS
T ss_pred             ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC-CCeEEEEECCCCCEEEEEcCCCEEEEEEC-CC
Confidence            6655 56999999999999999999999999995 677788888776 89999999999999999999999999996 45


Q ss_pred             eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                      +....+..+...+.    +++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|+|++|++++.||.|
T Consensus       458 ~~~~~~~~~~~~v~----~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          458 QLLQTLTGHSSSVR----GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  532 (577)
T ss_dssp             CEEEEEECCSSCEE----EEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             CEEEEEcCCCCCEE----EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence            66777777766554    4999999999999999999999995 688889999999999999999999999999999999


Q ss_pred             EEcC
Q 010470          507 CVWT  510 (510)
Q Consensus       507 ~iwd  510 (510)
                      ++||
T Consensus       533 ~lwd  536 (577)
T 2ymu_A          533 KLWN  536 (577)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.1e-41  Score=326.93  Aligned_cols=288  Identities=15%  Similarity=0.250  Sum_probs=243.9

Q ss_pred             ccceeeccccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCCCcceeccc--ccccceeEEEEec-CCCEEEEEeCCCe
Q 010470          215 STCKHKINAHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGSLSSTLY--GCLGSVLDLAITH-DNRSVIAASSSNN  290 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~  290 (510)
                      ......+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++.....+.  +|...|.+++|+| ++.+|++++.|+.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~  142 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA  142 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence            34566789999999999999999 999999999999999999887766654  6999999999999 7899999999999


Q ss_pred             EEEEEcCCCCeeEeecC---CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCC-E
Q 010470          291 LYVWDVNSGRVRHTLTG---HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-T  365 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~-~  365 (510)
                      |++||+.+ .....+..   |...|.+++|+| ++.+|++++.||.|++||+ ++..+..+..+ ..+.+++|+|++. +
T Consensus       143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence            99999985 55555543   448899999999 8899999999999999999 56677777655 5699999999999 9


Q ss_pred             EEEecCCCcEEEEECCC----CceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeee
Q 010470          366 IFSGHIDGNLRLWDIQT----GKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA  440 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  440 (510)
                      +++|+.||.|++||+++    +..+..+ .+. ..|.+++|+| ++.+|++++.|+.|++||++++.....+..+.....
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~-~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  297 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHE-KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF  297 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS-SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe-cCC-CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence            99999999999999987    5566555 343 8999999999 999999999999999999998877776665432211


Q ss_pred             -------------cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc--cCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470          441 -------------SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE--HTAPVLSCSWSGLGKPLASADKNGV  505 (510)
Q Consensus       441 -------------~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~  505 (510)
                                   ..+..++++|+|++  +|+.||.|++||+.+++.+..+.+  |...+..++|+|++++|++|+ ||.
T Consensus       298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~  374 (383)
T 3ei3_B          298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN  374 (383)
T ss_dssp             TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred             ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence                         12223556666666  777899999999999999999887  567788889999999999997 999


Q ss_pred             EEEcC
Q 010470          506 VCVWT  510 (510)
Q Consensus       506 i~iwd  510 (510)
                      |++||
T Consensus       375 i~iw~  379 (383)
T 3ei3_B          375 ILIWN  379 (383)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-42  Score=337.10  Aligned_cols=306  Identities=15%  Similarity=0.224  Sum_probs=261.8

Q ss_pred             cCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC----Ccceeccccccc
Q 010470          193 QVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT----GSLSSTLYGCLG  268 (510)
Q Consensus       193 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~  268 (510)
                      +.|+.+++|+.......      .+...+ .|.+.|++++|+|++.+|++|+.||.|++||+.+    ...+..+.+|..
T Consensus        42 ~~d~~v~iw~~~~~~~~------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~  114 (416)
T 2pm9_A           42 STDSSLELWSLLAADSE------KPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS  114 (416)
T ss_dssp             CCCCCCEEEESSSGGGC------SCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS
T ss_pred             CCCCeEEEEEccCCCCC------cEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc
Confidence            67888999985442110      122223 5889999999999999999999999999999987    357788889999


Q ss_pred             ceeEEEEecC-CCEEEEEeCCCeEEEEEcCCCC------eeEe---ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          269 SVLDLAITHD-NRSVIAASSSNNLYVWDVNSGR------VRHT---LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       269 ~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~------~~~~---~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      .|.+++|+|+ +.+|++++.||.|++||+.+++      ....   +..|...|.+++|+|.++.++++++.||.|++||
T Consensus       115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  194 (416)
T 2pm9_A          115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD  194 (416)
T ss_dssp             CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred             ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence            9999999998 8999999999999999999876      3332   3679999999999995488999999999999999


Q ss_pred             CCCCeEeeeeeec-------CceeEEEEcCCC-CEEEEecCCC---cEEEEECCCC-ceeeeec-ccccccEEEEEEcC-
Q 010470          339 LHKGYCVNTIIFH-------SNCNALAFSMDG-QTIFSGHIDG---NLRLWDIQTG-KLLSEVA-AHSLAAVTSISLSR-  404 (510)
Q Consensus       339 ~~~~~~~~~~~~~-------~~i~~i~~~~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~~i~~i~~~~-  404 (510)
                      ++++..+..+..+       ..+.+++|+|++ .++++++.||   .|++||++++ .+...+. .+. ..|.+++|+| 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~-~~v~~~~~s~~  273 (416)
T 2pm9_A          195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ-KGILSLDWCHQ  273 (416)
T ss_dssp             TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCS-SCEEEEEECSS
T ss_pred             CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCcc-CceeEEEeCCC
Confidence            9999998888764       569999999997 6899999998   9999999986 5666666 555 8999999999 


Q ss_pred             CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCcceeeccc----
Q 010470          405 SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE-SYVAAGSADGSVYIWSISKADIVRTLK----  479 (510)
Q Consensus       405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~----  479 (510)
                      ++.+|++++.|+.|++||+++++.+..+..+...+..    ++|+|++ .+|++++.||.|++|++.++.......    
T Consensus       274 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~----~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~  349 (416)
T 2pm9_A          274 DEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFK----TKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET  349 (416)
T ss_dssp             CSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCC----EEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----
T ss_pred             CCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEE----EEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccc
Confidence            9999999999999999999999999999887766554    9999999 899999999999999998765433221    


Q ss_pred             -------------------------------ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          480 -------------------------------EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       480 -------------------------------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                                                     .|..++.+++|+|+|++|++++.||.|+||+
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~  411 (416)
T 2pm9_A          350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN  411 (416)
T ss_dssp             -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred             cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence                                           1667888999999999999999999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.5e-42  Score=332.02  Aligned_cols=308  Identities=19%  Similarity=0.278  Sum_probs=259.9

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.|+.+++|+....         .....+.+| ..+....|+|++++|++|+.||.|++||+.++.....+.+|
T Consensus        69 ~~l~~~~~d~~v~i~d~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  138 (420)
T 3vl1_A           69 SHLYKARLDGHDFLFNTIIR---------DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH  138 (420)
T ss_dssp             TTEEEEEETTEEEEEECCSE---------ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred             CeEEEEEcCCcEEEEEeccc---------ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence            34567777888888885432         122334455 45566688999999999999999999999999998888999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      ...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+.
T Consensus       139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeE
Confidence            99999999999999999999999999999999999999999999999999999 88999999999999999999999888


Q ss_pred             eeeec-------------------------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEE
Q 010470          347 TIIFH-------------------------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS  401 (510)
Q Consensus       347 ~~~~~-------------------------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~  401 (510)
                      .+..+                         ..+.+++|+|++++|++|+.||.|++||+++++.+..+...+...|.+++
T Consensus       218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  297 (420)
T 3vl1_A          218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT  297 (420)
T ss_dssp             EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEE
T ss_pred             EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEE
Confidence            88642                         23455666899999999999999999999999988888766558999999


Q ss_pred             EcCCCC-EEEEEecCCcEEEEEcCCcee-eeEeec-CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-----
Q 010470          402 LSRSGN-IILTSGRDNLHNLFDIRSLEV-CGSLRA-TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-----  473 (510)
Q Consensus       402 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-----  473 (510)
                      |+|++. +|++++.||.|++||++++.. +..+.. +...+.    .+ +.+++.+|++++.||.|++|++....     
T Consensus       298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~----~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~  372 (420)
T 3vl1_A          298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPIN----NV-YFAAGALFVSSGFDTSIKLDIISDPESERPA  372 (420)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEE----EE-EEETTEEEEEETTTEEEEEEEECCTTCCSCE
T ss_pred             EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCce----EE-EeCCCCEEEEecCCccEEEEeccCCCCCccc
Confidence            999999 999999999999999998643 566665 333332    24 55688999999999999999987732     


Q ss_pred             ----eeecccccCcCEEEEEEeCCCC---cEEEeeCCCeEEEcC
Q 010470          474 ----IVRTLKEHTAPVLSCSWSGLGK---PLASADKNGVVCVWT  510 (510)
Q Consensus       474 ----~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~dg~i~iwd  510 (510)
                          ....+..|.+.|.+++|+|++.   .|++++.+|.+.+|+
T Consensus       373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          373 IEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             ECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             eeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence                2223456888999999999999   788888999999995

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6e-42  Score=326.50  Aligned_cols=284  Identities=17%  Similarity=0.293  Sum_probs=245.0

Q ss_pred             eccccccceEEEEEecC----CCEEEEeeCCCeEEEEeCCCCcceecccc-----cccceeEEEEecC----CCEEEEEe
Q 010470          220 KINAHEGGCASILFEYN----SARLISGGQDKSIKLWDTNTGSLSSTLYG-----CLGSVLDLAITHD----NRSVIAAS  286 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~  286 (510)
                      ...+|.++|++++|+|+    ...+++++.++.|++||+.++..+..+..     |...|++++|+|+    +.+|++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    45677777788999999998877666654     5578999999999    67999999


Q ss_pred             CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee----eecCceeEEEEcCC
Q 010470          287 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI----IFHSNCNALAFSMD  362 (510)
Q Consensus       287 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~i~~i~~~~~  362 (510)
                      .||.|++||+.+++.+..+.+|...|.+++|+|.++.+|++++.||.|++||+.+++.+..+    .....+.+++|+|+
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            99999999999999999999999999999999977899999999999999999999988887    23456999999999


Q ss_pred             CCEEEEecCCCcEEEEECCCCceeeeecc----------------------------cccccEEEEEEcCCCCEEEEEec
Q 010470          363 GQTIFSGHIDGNLRLWDIQTGKLLSEVAA----------------------------HSLAAVTSISLSRSGNIILTSGR  414 (510)
Q Consensus       363 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------~~~~~i~~i~~~~~~~~l~~~~~  414 (510)
                      +.+|++++.||.|++||+++++....+..                            +. ..|.+++|+  ++++++++.
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~~~~~  249 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR-NYVDCVRWL--GDLILSKSC  249 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS-SCCCEEEEE--TTEEEEECS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc-ceEEEEEEc--CCEEEEEec
Confidence            99999999999999999998765544332                            44 889999998  789999999


Q ss_pred             CCcEEEEEcCCcee--------------eeEeecCCCeeecCceeEEEcCC--CCEEEEEcCCCeEEEEeCCCcceee--
Q 010470          415 DNLHNLFDIRSLEV--------------CGSLRATGNRVASNWSRSCISPD--ESYVAAGSADGSVYIWSISKADIVR--  476 (510)
Q Consensus       415 d~~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~--  476 (510)
                      |+.|++||+.++..              +..+..+...+.    .++|+|+  +++|++|+.||.|++||+.++++..  
T Consensus       250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  325 (366)
T 3k26_A          250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW----YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK  325 (366)
T ss_dssp             SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSS----CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred             CCEEEEEeCCCccccccccccCCcchheeccccccCCcEE----EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence            99999999987643              555555554443    4888998  9999999999999999999886543  


Q ss_pred             --ccccc--CcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          477 --TLKEH--TAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       477 --~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                        .+..|  ..+|++++|+|++++|++++.||.|++||
T Consensus       326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence              66666  78999999999999999999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-41  Score=311.81  Aligned_cols=282  Identities=16%  Similarity=0.321  Sum_probs=253.0

Q ss_pred             CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      +......+.+|.+.|++++| |++.+|++|+.||.|++||+.++.....+..|...|.+++|+|++.++++++.||.|++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            44678889999999999999 99999999999999999999999988889999999999999999999999999999999


Q ss_pred             EEcCCC---CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcC-CCCEEEE
Q 010470          294 WDVNSG---RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSM-DGQTIFS  368 (510)
Q Consensus       294 wd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~-~~~~l~~  368 (510)
                      |++...   +....+.+|...|.++.|.   ++++++++.||.|++||  .+.....+..+ ..+.++++.| ++..+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            998764   5677888999999999993   57999999999999999  56677776655 5689999988 9999999


Q ss_pred             ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE
Q 010470          369 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI  448 (510)
Q Consensus       369 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (510)
                      ++.||.|++||  .++....+...+...+.+++|+|++. +++++.||.|++||+++++.+..+..+...+.    +++|
T Consensus       161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~----~~~~  233 (313)
T 3odt_A          161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY----CIKL  233 (313)
T ss_dssp             EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEE----EEEE
T ss_pred             EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEE----EEEE
Confidence            99999999999  55666777764558999999999998 99999999999999999999999887776555    4999


Q ss_pred             cCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          449 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|++ .|++++.||.|++||+.+++.+..+..|..+|.+++|+|++. +++++.||.|++||
T Consensus       234 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          234 LPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             CTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             ecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            9999 588999999999999999999999999999999999999998 77899999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.4e-41  Score=323.26  Aligned_cols=283  Identities=14%  Similarity=0.203  Sum_probs=246.4

Q ss_pred             ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      +..|.++|++++|+|+|++|++|+.||.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            44599999999999999999999999999999999887  7888889999999999999999999999999999999988


Q ss_pred             CCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---eeee-e-ecCceeEEEEcCCCCEEEEecC
Q 010470          299 GRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTI-I-FHSNCNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       299 ~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~-~-~~~~i~~i~~~~~~~~l~~~~~  371 (510)
                      ++....  +..|...|.+++|+| ++.+|++++.||.|++||+..+..   ...+ . ....+.+++|+|++.+|++|+.
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            875444  467899999999999 789999999999999999987752   2232 2 2356999999999999999999


Q ss_pred             CCcEEEEECC------------------CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470          372 DGNLRLWDIQ------------------TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       372 dg~i~i~d~~------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  433 (510)
                      ||.|++||++                  .++.+..+..+. ..+.+++|+|++.+|++++.|+.|++||+++++.+..+.
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  241 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC-GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  241 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS-SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCC-CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence            9999999953                  567777777665 899999999999999999999999999999999998888


Q ss_pred             cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC--cce--------------------------------e----
Q 010470          434 ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK--ADI--------------------------------V----  475 (510)
Q Consensus       434 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~--------------------------------~----  475 (510)
                      .+...+.    .++|+|++.+|++| .||.|++|++.+  +..                                .    
T Consensus       242 ~~~~~v~----~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (372)
T 1k8k_C          242 SETLPLL----AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA  316 (372)
T ss_dssp             CSSCCEE----EEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred             cCCCCeE----EEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence            7765544    49999999999988 899999999987  420                                0    


Q ss_pred             --ecc-cccCcCEEEEEEe-CCC---CcEEEeeCCCeEEEcC
Q 010470          476 --RTL-KEHTAPVLSCSWS-GLG---KPLASADKNGVVCVWT  510 (510)
Q Consensus       476 --~~~-~~~~~~v~~~~~~-~~~---~~l~s~~~dg~i~iwd  510 (510)
                        ..+ .+|..+|++++|+ ++|   .+|++|+.||.|++||
T Consensus       317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence              233 4799999999976 666   8999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6e-41  Score=315.95  Aligned_cols=267  Identities=27%  Similarity=0.430  Sum_probs=239.2

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc----ceec
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS----LSST  262 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~  262 (510)
                      ..+++++.||.+++|+...         ......+..|.+.|.+++|+|+|++|++|+.|+.|++|++.++.    ....
T Consensus        68 ~~l~s~s~Dg~v~iWd~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~  138 (340)
T 1got_B           68 RLLLSASQDGKLIIWDSYT---------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             SEEEEEETTTEEEEEETTT---------CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCC---------CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence            3577888999999998443         34567788999999999999999999999999999999998653    4556


Q ss_pred             ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470          263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~  342 (510)
                      +.+|.+.|.++.|++++. +++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.++++|+.||.|++||++++
T Consensus       139 ~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~  216 (340)
T 1got_B          139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG  216 (340)
T ss_dssp             EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC
T ss_pred             ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC
Confidence            789999999999998875 89999999999999999999999999999999999999 8899999999999999999999


Q ss_pred             eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470          343 YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNLHNL  420 (510)
Q Consensus       343 ~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i  420 (510)
                      .++..+..+ ..|++++|+|++++|++|+.||.|++||+++++.+..+.... ...|.+++|+|+|.+|++|+.|+.|++
T Consensus       217 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v  296 (340)
T 1got_B          217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV  296 (340)
T ss_dssp             SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence            998888766 459999999999999999999999999999988877665332 247999999999999999999999999


Q ss_pred             EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      ||+.++.....+.+|...+.+    ++|+|+|.+|++|+.||.|+|||
T Consensus       297 wd~~~~~~~~~~~~h~~~v~~----~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          297 WDALKADRAGVLAGHDNRVSC----LGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EETTTCCEEEEEECCSSCEEE----EEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEcccCcEeeEeecCCCcEEE----EEEcCCCCEEEEEcCCccEEecC
Confidence            999999999888888776654    99999999999999999999997

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=323.42  Aligned_cols=290  Identities=18%  Similarity=0.296  Sum_probs=245.1

Q ss_pred             CccceeeccccccceEEEEEecCCCEE-EEeeC---CCeEEEEeCCCCcceecc-cccccceeEEEEecC---CCEEEEE
Q 010470          214 PSTCKHKINAHEGGCASILFEYNSARL-ISGGQ---DKSIKLWDTNTGSLSSTL-YGCLGSVLDLAITHD---NRSVIAA  285 (510)
Q Consensus       214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~---dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~  285 (510)
                      |....+.+.+|.+.|.+++|+|++..+ ++|+.   ||.|++||+.+++..... .+|...|.+++|+|+   +.+|+++
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            344556678999999999999999655 55655   899999999988765443 378999999999999   6999999


Q ss_pred             eCCCeEEEEEcCCCC-eeEeecCCCCceEEEEE------ecCCCCEEEEEeCCCcEEEEECCCCe-Eeeeeeec-----C
Q 010470          286 SSSNNLYVWDVNSGR-VRHTLTGHTDKVCAVDV------SKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFH-----S  352 (510)
Q Consensus       286 ~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~i~~------~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-----~  352 (510)
                      +.||.|++||+.+++ ....+.+|...|.++.|      +| ++.+|++++.||.|++||+.++. .+..+..+     .
T Consensus        87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR  165 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred             cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence            999999999999988 88999999999999966      45 78899999999999999999886 56666543     2


Q ss_pred             ceeEEE----EcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC---CCCEEEEEecCCcEEEEEcCC
Q 010470          353 NCNALA----FSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR---SGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       353 ~i~~i~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      .+.+++    |+|++.++++++.||.|++||+++++...... +. ..|.+++|+|   ++.++++++.||.|++||+++
T Consensus       166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-IK-NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-CS-SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-CC-CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence            578888    78899999999999999999999988755433 33 7999999999   999999999999999999998


Q ss_pred             ceeeeEee-----cCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCc-------------------ceeecccc
Q 010470          426 LEVCGSLR-----ATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISKA-------------------DIVRTLKE  480 (510)
Q Consensus       426 ~~~~~~~~-----~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~  480 (510)
                      +.....+.     .+...    +..++|+|++. +|++|+.||.|++||+.++                   +.+..+.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  319 (357)
T 3i2n_A          244 QHPTKGFASVSEKAHKST----VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL  319 (357)
T ss_dssp             EETTTEEEEEEEECCSSC----EEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred             CCcccceeeeccCCCcCC----EEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence            76655544     45444    44599999999 8999999999999998754                   35667788


Q ss_pred             cCcCEEEEEEeCCCCcEE-EeeCCCeEEEcC
Q 010470          481 HTAPVLSCSWSGLGKPLA-SADKNGVVCVWT  510 (510)
Q Consensus       481 ~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd  510 (510)
                      |..+|++++|+|++++|+ +++.||.|++||
T Consensus       320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence            999999999999999998 899999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.4e-41  Score=315.38  Aligned_cols=247  Identities=17%  Similarity=0.218  Sum_probs=212.7

Q ss_pred             ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec----ccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST----LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      ...|..+|.+++|+|++ .|++|+.||+|+|||+.+++.+..    ..+|.+.|++++|+|++++|++|+.|+.|++||+
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            34567889999999985 788999999999999998876543    3489999999999999999999999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcC-CCCEEEEecCC
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSM-DGQTIFSGHID  372 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~-~~~~l~~~~~d  372 (510)
                      .+++++..+.+|...|.+++|+|.+..+|++++.||+|++||++++++...+...   ..+.+++|+| ++.+|++|+.|
T Consensus       157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence            9999999999999999999999966678999999999999999999888777543   3488999999 56788999999


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      |.|++||+++++.+..+..|. ..|++++|+|++ ++|++++.|+.|+|||+.+++.. .+.+|...+    .+++|+|+
T Consensus       237 g~v~~wd~~~~~~~~~~~~h~-~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V----~~v~~sp~  310 (344)
T 4gqb_B          237 GTVSLVDTKSTSCVLSSAVHS-QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFV----RDATWSPL  310 (344)
T ss_dssp             SEEEEEESCC--CCEEEECCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCE----EEEEECSS
T ss_pred             CcEEEEECCCCcEEEEEcCCC-CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCE----EEEEEeCC
Confidence            999999999999999999887 899999999998 57999999999999999988765 345665554    45999999


Q ss_pred             CC-EEEEEcCCCeEEEEeCCCcce
Q 010470          452 ES-YVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       452 ~~-~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      +. +|++|+.||+|++|++.+...
T Consensus       311 ~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          311 NHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             STTEEEEEETTSCEEEEECCC---
T ss_pred             CCeEEEEEcCCCeEEEEECCCCCC
Confidence            86 577899999999999987543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-41  Score=329.89  Aligned_cols=294  Identities=15%  Similarity=0.267  Sum_probs=246.7

Q ss_pred             ccceeec-cccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCC---Cccee-cc-cccccceeEEEEecCCCEEEEEeC
Q 010470          215 STCKHKI-NAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNT---GSLSS-TL-YGCLGSVLDLAITHDNRSVIAASS  287 (510)
Q Consensus       215 ~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~---~~~~~-~~-~~~~~~v~~~~~~~~~~~l~~~~~  287 (510)
                      ......+ .+|.+.|++++|+| ++.+|++|+.||.|+|||+.+   +.... .+ .+|...|.+++|+|++.+|++++.
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~  131 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK  131 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC
Confidence            4566777 89999999999999 999999999999999999876   43211 22 268999999999999999999999


Q ss_pred             CCeEEEEEcC---CCCeeEeecC------------CCCceEEEE--EecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee
Q 010470          288 SNNLYVWDVN---SGRVRHTLTG------------HTDKVCAVD--VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF  350 (510)
Q Consensus       288 d~~i~iwd~~---~~~~~~~~~~------------~~~~v~~i~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  350 (510)
                      ||.|++||+.   +++....+.+            +...+.++.  +++ ++.++++++.||.|++||+++++++..+..
T Consensus       132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence            9999999994   5655444332            445566666  335 688999999999999999999999998876


Q ss_pred             ---cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC----CCCEEEEEecCCcEEEEEc
Q 010470          351 ---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR----SGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       351 ---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~----~~~~l~~~~~d~~i~i~d~  423 (510)
                         ...+.+++|+|++.+|++|+.||.|++||+++++.+..+...+..+|.+++|+|    ++.+|++++.||.|++||+
T Consensus       211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence               367999999999999999999999999999999999888643337999996654    6779999999999999999


Q ss_pred             CCceeeeEeecCCCe----------------------eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-
Q 010470          424 RSLEVCGSLRATGNR----------------------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-  480 (510)
Q Consensus       424 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  480 (510)
                      ++++....+..+...                      ....+.+++|+ ++++|++|+.||.|++||+.+++....+.+ 
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred             CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence            999988888755322                      22346678999 789999999999999999999887766654 


Q ss_pred             ------------------------------------cCcCEEEEEEeCC--CCcEEEeeCCCeEEEcC
Q 010470          481 ------------------------------------HTAPVLSCSWSGL--GKPLASADKNGVVCVWT  510 (510)
Q Consensus       481 ------------------------------------~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd  510 (510)
                                                          |...|++++|+++  +.+|++|+.||.|+||+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                                8899999999998  77999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.1e-40  Score=309.02  Aligned_cols=246  Identities=15%  Similarity=0.215  Sum_probs=220.7

Q ss_pred             ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      ...++.+|.+.|.+++|+|++++|++++.||.|++||+.++..+..+..|..+|.++.|+| ++++|++|+.|+.|++||
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEE
Confidence            4567889999999999999999999999999999999999999999999999999999999 889999999999999999


Q ss_pred             CCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcEEEEECCCCce-eeeecccccccEEEEEEcC-CCCEEEEEecC
Q 010470          339 LHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL-LSEVAAHSLAAVTSISLSR-SGNIILTSGRD  415 (510)
Q Consensus       339 ~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d  415 (510)
                      +.++.++..+..+. .|.+++|+|++.+|++|+.||.|++||++++.. ...+..|. ..|.+++|+| ++.+|++++.|
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-HFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC-SCEEEEEECTTCTTEEEEEETT
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC-CcEEEEEECCCCCCEEEEEeCC
Confidence            99999998888764 599999999999999999999999999988744 44556665 8999999999 67899999999


Q ss_pred             CcEEEEEcCCceeeeEeecCC-CeeecCceeEEEcC--CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470          416 NLHNLFDIRSLEVCGSLRATG-NRVASNWSRSCISP--DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG  492 (510)
Q Consensus       416 ~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  492 (510)
                      +.|++||+++......+.... ..    +..+.++|  ++.+|++|+.||+|++||+.+++++..+.+|...|.+++|+|
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p  238 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERG----VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP  238 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTC----EEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             CeEEEEECCCCCccceeccCCcCc----EEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence            999999998776655554322 22    23367765  788999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeeCCCeEEEcC
Q 010470          493 LGKPLASADKNGVVCVWT  510 (510)
Q Consensus       493 ~~~~l~s~~~dg~i~iwd  510 (510)
                      ++++|++|+.||.|++||
T Consensus       239 ~~~~l~s~s~Dg~i~iWd  256 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWN  256 (304)
T ss_dssp             SSSEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEE
Confidence            999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.1e-40  Score=309.15  Aligned_cols=278  Identities=23%  Similarity=0.329  Sum_probs=240.2

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.|+.+++|+.....    .....+...+.+|...|.+++|+|+|.+|++|+.|++|++||+.+++.+..+.+|
T Consensus        31 ~~l~s~s~D~~v~~W~~~~~~----~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h  106 (319)
T 3frx_A           31 NLLLSASRDKTLISWKLTGDD----QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH  106 (319)
T ss_dssp             TEEEEEETTSEEEEEEEEEET----TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cEEEEecCCccEEEecCCCCC----ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC
Confidence            457888999999999854311    1112356789999999999999999999999999999999999999999999999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC-----CCCEEEEEeCCCcEEEEECCC
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI-----SSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      ...|.+++|+|++.+|++++.|+.|++||+. +..+..+.+|...|.++.+.|.     ++..+++++.|+.|++||+.+
T Consensus       107 ~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  185 (319)
T 3frx_A          107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ  185 (319)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence            9999999999999999999999999999986 6678888999999999999984     234899999999999999999


Q ss_pred             CeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470          342 GYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL  420 (510)
Q Consensus       342 ~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i  420 (510)
                      +.....+..+ ..+.+++|+|+|.+|++|+.||.|++||+.+++.+..+..+  ..+.+++|+|++.++++++.+ .+++
T Consensus       186 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v  262 (319)
T 3frx_A          186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKV  262 (319)
T ss_dssp             TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEE
T ss_pred             chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEE
Confidence            9888887765 56999999999999999999999999999999998888765  689999999999999888755 5999


Q ss_pred             EEcCCceeeeEeecCCC----eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470          421 FDIRSLEVCGSLRATGN----RVASNWSRSCISPDESYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  472 (510)
                      |++........+..+..    .....+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            99998777666654322    12234556999999999999999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-40  Score=324.28  Aligned_cols=280  Identities=16%  Similarity=0.278  Sum_probs=248.9

Q ss_pred             cccccceEEEEEecCCC-EEEEeeCCCeEEEEeC----CCCc------ceecccc----------cccceeEEEEecCCC
Q 010470          222 NAHEGGCASILFEYNSA-RLISGGQDKSIKLWDT----NTGS------LSSTLYG----------CLGSVLDLAITHDNR  280 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~  280 (510)
                      ..|.++|++++|+|+|. +|++|+.||.|++|++    .++.      ....+..          |.+.|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45669999999999999 9999999999999999    8877      3333333          678999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-------
Q 010470          281 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-------  353 (510)
Q Consensus       281 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------  353 (510)
                      +|++++.||.|++|| .+++....+..|...|.+++|+| ++.+|++++.||.|++||+.++..+..+..+..       
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA  199 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence            999999999999999 67888999999999999999999 888999999999999999999998888766543       


Q ss_pred             ---------eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          354 ---------CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       354 ---------i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                               +.+++|+|++ .+++++.+|.|++||+++++.+..+..+. ..|.+++|+|++++|++++.|+.|++||++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHH-GPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             ------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCS-SCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             ccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCC-CceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                     8899999875 57888999999999999999888888776 899999999999999999999999999999


Q ss_pred             CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          425 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                      +++....+..+...+.    .++|+|++ ++++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||
T Consensus       278 ~~~~~~~~~~~~~~i~----~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIV----SASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG  352 (425)
T ss_dssp             SBSCSEEECCCSSCEE----EEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             CCccceEecCCCccEE----EEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence            9988888876665554    49999999 999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEcC
Q 010470          505 VVCVWT  510 (510)
Q Consensus       505 ~i~iwd  510 (510)
                      .|++||
T Consensus       353 ~i~i~~  358 (425)
T 1r5m_A          353 QVNVYD  358 (425)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.2e-40  Score=310.98  Aligned_cols=269  Identities=21%  Similarity=0.373  Sum_probs=238.9

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC------cce
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG------SLS  260 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~  260 (510)
                      ..+++++.|+.+++|+...         ......+..|...|.+++|+|+|.+|++|+.|+.+++|++...      ...
T Consensus        77 ~~l~s~s~Dg~v~vWd~~~---------~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~  147 (354)
T 2pbi_B           77 RRIVSSSQDGKVIVWDSFT---------TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK  147 (354)
T ss_dssp             SEEEEEETTSEEEEEETTT---------CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred             CEEEEEeCCCeEEEEECCC---------CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence            4577889999999998432         3456677889999999999999999999999999999998643      234


Q ss_pred             ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEEC
Q 010470          261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDL  339 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~  339 (510)
                      ..+.+|...|.+++|+|++..|++++.|++|++||+.+++++..+.+|...|.++.|+|. ++++|++|+.||.|++||+
T Consensus       148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~  227 (354)
T 2pbi_B          148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM  227 (354)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred             eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            556789999999999999999999999999999999999999999999999999999884 3589999999999999999


Q ss_pred             CCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCCc
Q 010470          340 HKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNL  417 (510)
Q Consensus       340 ~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~  417 (510)
                      ++++++..+..+ ..|++++|+|++.+|++|+.||.|++||++.++.+..+..+. ...+.+++|+|+|.+|++++.|+.
T Consensus       228 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~  307 (354)
T 2pbi_B          228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT  307 (354)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc
Confidence            999999888766 459999999999999999999999999999988776665432 247899999999999999999999


Q ss_pred             EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      |++||+.++..+..+.+|...+..    ++|+|+|++|++|+.||+|+||+
T Consensus       308 i~vwd~~~~~~~~~l~~h~~~v~~----l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          308 INVWDVLKGSRVSILFGHENRVST----LRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEETTTCSEEEEECCCSSCEEE----EEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCceEEEEECCCCcEEE----EEECCCCCEEEEEcCCCCEEecC
Confidence            999999999988888877766554    99999999999999999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.1e-40  Score=325.22  Aligned_cols=290  Identities=16%  Similarity=0.237  Sum_probs=234.3

Q ss_pred             ceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcc--eecccccccceeEEEEec-CCCEEEEEeCCCeEE
Q 010470          217 CKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSL--SSTLYGCLGSVLDLAITH-DNRSVIAASSSNNLY  292 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~  292 (510)
                      ......+|...|+|++|+| ++++||+|+.||.|+|||+.++..  ...+.+|.+.|++++|+| ++.+|++++.||+|+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            4456678999999999999 567999999999999999987654  345668999999999998 688999999999999


Q ss_pred             EEEcCCCCeeEeecC--CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCC-EEEE
Q 010470          293 VWDVNSGRVRHTLTG--HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQ-TIFS  368 (510)
Q Consensus       293 iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~-~l~~  368 (510)
                      +||+.++........  +...+.+++|+| ++.+|++|+.||.|++||++. +.+..+..+ ..|.+++|+|++. +|++
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEE
Confidence            999987654433333  345678999999 889999999999999999964 455555554 5699999999876 7789


Q ss_pred             ecCCCcEEEEECCCCceeeee---cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec--Cc
Q 010470          369 GHIDGNLRLWDIQTGKLLSEV---AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS--NW  443 (510)
Q Consensus       369 ~~~dg~i~i~d~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~  443 (510)
                      |+.||.|++||+++++....+   ..|. ..|++++|+|+|.+|++++.||.|++||+.++.....+..+......  ..
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  347 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHR-HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP  347 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCS-SCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred             ecCcceeeEEecccccccceEEEeeecc-ccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence            999999999999887654433   2343 78999999999999999999999999999998877776655433221  12


Q ss_pred             eeEEEcCCCCEEEEEc------------CCCeEEEEeCCCcceeeccc-ccCcCEEEE-EEeCCCCcEEEeeCCCeEEEc
Q 010470          444 SRSCISPDESYVAAGS------------ADGSVYIWSISKADIVRTLK-EHTAPVLSC-SWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       444 ~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ....|+|++.++++++            .++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |+.|+||
T Consensus       348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW  426 (435)
T 4e54_B          348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW  426 (435)
T ss_dssp             CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred             EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence            2346777777776664            23579999999999888764 588888887 6999999999876 8899999


Q ss_pred             C
Q 010470          510 T  510 (510)
Q Consensus       510 d  510 (510)
                      |
T Consensus       427 ~  427 (435)
T 4e54_B          427 S  427 (435)
T ss_dssp             C
T ss_pred             E
Confidence            7

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.7e-42  Score=326.66  Aligned_cols=282  Identities=13%  Similarity=0.131  Sum_probs=229.5

Q ss_pred             ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC--cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      +..|.++|++++|+|+|++|++|+.||.|++||+.++  .....+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            4457789999999999999999999999999999988  77888999999999999999999999999999999999998


Q ss_pred             CC---eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---eeeeee--cCceeEEEEcCCCCEEEEec
Q 010470          299 GR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC---VNTIIF--HSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       299 ~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~--~~~i~~i~~~~~~~~l~~~~  370 (510)
                      +.   ....+.+|...|.+++|+| ++.+|++++.|+.|++||+.++..   ...+..  ...+.+++|+|++++|++|+
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence            77   6777888999999999999 889999999999999999998763   555554  45699999999999999999


Q ss_pred             CCCcEEEEECC------------------CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee----
Q 010470          371 IDGNLRLWDIQ------------------TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV----  428 (510)
Q Consensus       371 ~dg~i~i~d~~------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~----  428 (510)
                      .||.|++||+.                  .++.+..+ .+. ..|.+++|+|++++|++++.||.|++||+.++..    
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  243 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA  243 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS-SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC-ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence            99999999985                  24455555 444 8899999999999999999999999999998876    


Q ss_pred             eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc--ee-------------------------------
Q 010470          429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD--IV-------------------------------  475 (510)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~-------------------------------  475 (510)
                      +..+..+...+.    +++|+|+|++|++|+.++.+ +|+.....  ..                               
T Consensus       244 ~~~~~~~~~~v~----~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (377)
T 3dwl_C          244 LITVKLSQLPLR----SLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT  318 (377)
T ss_dssp             CCCEECSSSCEE----EEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred             eEeecCCCCceE----EEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence            666766665554    49999999999999877755 66654211  00                               


Q ss_pred             ---e----------------cccccCcCEEEEEEeCCCC----cEEEeeCCCeEEEcC
Q 010470          476 ---R----------------TLKEHTAPVLSCSWSGLGK----PLASADKNGVVCVWT  510 (510)
Q Consensus       476 ---~----------------~~~~~~~~v~~~~~~~~~~----~l~s~~~dg~i~iwd  510 (510)
                         .                ....|.+.|+++++.+...    .|+|||.||.|++||
T Consensus       319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred             cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence               0                0112899999999776544    599999999999997

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.5e-40  Score=346.49  Aligned_cols=289  Identities=17%  Similarity=0.238  Sum_probs=263.4

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      ...+.+.+|.+.|++++|+|+|.+|++|+.||.|+|||+.++..+..+.+|.++|.+++|+|++++|++++.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeec-CceeEEEEcC-CCCEEEEecCC
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNCNALAFSM-DGQTIFSGHID  372 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~i~~~~-~~~~l~~~~~d  372 (510)
                      +.+++.+..+.+|.+.|.+++|+| ++.+|++++.||.|++||+.++ .....+..+ ..+.+++|+| ++..|++++.|
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            999999999999999999999999 8889999999999999999887 566666554 5699999999 88999999999


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP  450 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  450 (510)
                      |.|++||+.++.....+..++...+.+++|+|  ++.++++++.||.|++||+.++.....+..+...+.    +++|+|
T Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~----~~~~~~  238 (814)
T 3mkq_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS----FAVFHP  238 (814)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEE----EEEECS
T ss_pred             CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEE----EEEEcC
Confidence            99999999998888888777668899999999  999999999999999999999999888887766554    499999


Q ss_pred             CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc-EEEeeCCCeEEEc
Q 010470          451 DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP-LASADKNGVVCVW  509 (510)
Q Consensus       451 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iw  509 (510)
                      +|.+|++|+.||.|++||+.+++.+..+..|...+.+++|+|+|.. +++++.++.+.+|
T Consensus       239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  298 (814)
T 3mkq_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL  298 (814)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEE
Confidence            9999999999999999999999999999999999999999999874 3555556666666

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-41  Score=325.50  Aligned_cols=283  Identities=16%  Similarity=0.218  Sum_probs=246.2

Q ss_pred             cccceEEEEEecCCC-EEEEe----------eCCCeEEEEeCCCCcce--ecccccccceeEEEEecCCCEEEEEeCCCe
Q 010470          224 HEGGCASILFEYNSA-RLISG----------GQDKSIKLWDTNTGSLS--STLYGCLGSVLDLAITHDNRSVIAASSSNN  290 (510)
Q Consensus       224 h~~~v~~~~~s~~~~-~l~s~----------~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  290 (510)
                      +...|.+++|+|+|. +|++|          +.||.|+|||+.++...  .....|...|.+++|+|++.+|++++.||.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence            335689999999987 99999          88999999999987632  222368899999999999999999999999


Q ss_pred             EEEEEcCC----CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe------Eeeee----eecCceeE
Q 010470          291 LYVWDVNS----GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY------CVNTI----IFHSNCNA  356 (510)
Q Consensus       291 i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~----~~~~~i~~  356 (510)
                      |++||+.+    .+....+.+|...|.+++|+|.++.+|++++.||.|++||+.++.      ....+    .....+.+
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS  170 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence            99999987    458888999999999999999548999999999999999999876      33322    23356999


Q ss_pred             EEEcCC-CCEEEEecCCCcEEEEECCCCceeeeecccc-----cccEEEEEEcCCC-CEEEEEecCC---cEEEEEcCCc
Q 010470          357 LAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-----LAAVTSISLSRSG-NIILTSGRDN---LHNLFDIRSL  426 (510)
Q Consensus       357 i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~-~~l~~~~~d~---~i~i~d~~~~  426 (510)
                      ++|+|+ +.+|++++.||.|++||+++++.+..+..+.     ...+.+++|+|++ .++++++.|+   .|++||++++
T Consensus       171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence            999998 7899999999999999999999988887763     4889999999997 6899999998   9999999986


Q ss_pred             -eeeeEee-cCCCeeecCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCC-CcEEEeeC
Q 010470          427 -EVCGSLR-ATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG-KPLASADK  502 (510)
Q Consensus       427 -~~~~~~~-~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~  502 (510)
                       .....+. .+...+    .+++|+| ++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+|++++.
T Consensus       251 ~~~~~~~~~~~~~~v----~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  326 (416)
T 2pm9_A          251 NTPLQTLNQGHQKGI----LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF  326 (416)
T ss_dssp             TSCSBCCCSCCSSCE----EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred             CCCcEEeecCccCce----eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence             5555555 554444    4599999 99999999999999999999999999999999999999999999 79999999


Q ss_pred             CCeEEEcC
Q 010470          503 NGVVCVWT  510 (510)
Q Consensus       503 dg~i~iwd  510 (510)
                      ||.|++||
T Consensus       327 d~~i~iw~  334 (416)
T 2pm9_A          327 DNKIEVQT  334 (416)
T ss_dssp             SSEEEEEE
T ss_pred             CCcEEEEE
Confidence            99999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.6e-40  Score=316.55  Aligned_cols=278  Identities=25%  Similarity=0.356  Sum_probs=238.7

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-------c
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-------L  259 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~  259 (510)
                      ..+++++.|+.+++|+...         ......+.+|...|.+++|+|+|++|++|+.|+.|++||+.+..       .
T Consensus        79 ~~l~s~s~D~~v~iWd~~~---------~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~  149 (380)
T 3iz6_a           79 NWIVSASQDGRLIVWNALT---------SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPV  149 (380)
T ss_dssp             SCEEEEETTSEEEEEETTT---------TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred             CEEEEEeCCCeEEEEECCC---------CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccc
Confidence            4577889999999998543         34677889999999999999999999999999999999986532       3


Q ss_pred             eecccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCCCeeEee-----cCCCCceEEEEEecCCCCEEEEEeCCCc
Q 010470          260 SSTLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSGRVRHTL-----TGHTDKVCAVDVSKISSRHVVSAAYDRT  333 (510)
Q Consensus       260 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~s~~~dg~  333 (510)
                      ...+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+     .+|...|.++.|++.++++|++|+.||.
T Consensus       150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~  229 (380)
T 3iz6_a          150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT  229 (380)
T ss_dssp             CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSC
T ss_pred             eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCe
Confidence            45678999999999999974 57999999999999999999988777     6799999999998878899999999999


Q ss_pred             EEEEECC-CCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc------ccEEEEEEcCC
Q 010470          334 LKVWDLH-KGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL------AAVTSISLSRS  405 (510)
Q Consensus       334 i~iwd~~-~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~i~~i~~~~~  405 (510)
                      |++||++ .+..+..+..+ ..|++++|+|++.+|++|+.||.|++||++++..+..+..+..      ..+++++|+|+
T Consensus       230 v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  309 (380)
T 3iz6_a          230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS  309 (380)
T ss_dssp             EEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS
T ss_pred             EEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC
Confidence            9999998 45667777655 5699999999999999999999999999999998877765321      24899999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470          406 GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  473 (510)
                      |.+|++|+.||.|++||+.+++....+..........+.+++|+|+|.+|++|+.||+|+||++...+
T Consensus       310 g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99999999999999999999888777743333333455669999999999999999999999987654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-41  Score=332.72  Aligned_cols=313  Identities=12%  Similarity=0.094  Sum_probs=231.9

Q ss_pred             hHHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecC------CCEEEEeeCCCeEEEEeCCCCcc
Q 010470          186 LEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYN------SARLISGGQDKSIKLWDTNTGSL  259 (510)
Q Consensus       186 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~~~dg~i~iwd~~~~~~  259 (510)
                      ...+++++.|+.+++|+....     ........++.+|.+.|.+++|+|+      +.+||+|+.||+|+|||+.++..
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~-----~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~  247 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTS-----TLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT  247 (524)
T ss_dssp             ---------CEEEEEEEEETT-----TCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred             hhhhccCCCCceEEEEEccCC-----CCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence            345678899999999985331     1111223457788999999999997      57999999999999999987642


Q ss_pred             -----------eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-eeEeecCCCCceEEE--EEecCCC-CE
Q 010470          260 -----------SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-VRHTLTGHTDKVCAV--DVSKISS-RH  324 (510)
Q Consensus       260 -----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~i--~~~~~~~-~~  324 (510)
                                 ...+.+|...|++++|+|++ .|++|+.||+|++||+.++. +...+.+|...|.++  .|+| ++ .+
T Consensus       248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~  325 (524)
T 2j04_B          248 DVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTV  325 (524)
T ss_dssp             SSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCE
T ss_pred             ccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeE
Confidence                       23567899999999999864 89999999999999998764 556788999999999  4555 55 89


Q ss_pred             EEEEeCCCcEEEEECCCCeEeeeeeecC---ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEE
Q 010470          325 VVSAAYDRTLKVWDLHKGYCVNTIIFHS---NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS  401 (510)
Q Consensus       325 l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~  401 (510)
                      |++++.|++|++||++++++...+..+.   .+.+++|+|++..+++++.|++|++||++++..+..+..|. ..|.+++
T Consensus       326 laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~-~~V~sva  404 (524)
T 2j04_B          326 VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE-TTITAIG  404 (524)
T ss_dssp             EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS-SCEEEEE
T ss_pred             EEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC-CceEEEE
Confidence            9999999999999999887776665543   47899999999999999999999999999998888888776 8999999


Q ss_pred             EcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee-ecCceeEEEcCCCCEEEEEcCCCeEEEEeCC-Ccceeeccc
Q 010470          402 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV-ASNWSRSCISPDESYVAAGSADGSVYIWSIS-KADIVRTLK  479 (510)
Q Consensus       402 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~  479 (510)
                      |+|+|++|++|+.|++|++||+... ............ ...+..++|+|+|..+.. ..  .+.+|+.. ++..+..+.
T Consensus       405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~  480 (524)
T 2j04_B          405 VSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKID  480 (524)
T ss_dssp             CCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC------------
T ss_pred             eCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeec
Confidence            9999999999999999999998653 211111100000 011235788999985532 22  23444433 567788899


Q ss_pred             ccCcCEEEEEEeCCCC---cEEEeeCCCeEEEcC
Q 010470          480 EHTAPVLSCSWSGLGK---PLASADKNGVVCVWT  510 (510)
Q Consensus       480 ~~~~~v~~~~~~~~~~---~l~s~~~dg~i~iwd  510 (510)
                      +|..+|.+++|+|++.   .+++|+.||.|+||+
T Consensus       481 gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             -CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             CCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence            9999999999999965   899999999999995

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-39  Score=314.18  Aligned_cols=282  Identities=19%  Similarity=0.302  Sum_probs=243.0

Q ss_pred             eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc-cccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      ...+|...+.+.++++++..+++++.||.|++||+.++.....+.. |...|.+++|+|++.+|++++.||.|++||+.+
T Consensus        86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  165 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES  165 (401)
T ss_dssp             ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence            3447777655544444456788899999999999999988776665 789999999999999999999999999999999


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEE
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLR  376 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~  376 (510)
                      ++.+..+.+|...|.++.|+   +.++++++.||.|++||++ .+..+..+..+ ..+.+++|+|++.+|++|+.||.|+
T Consensus       166 ~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~  242 (401)
T 4aez_A          166 QTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ  242 (401)
T ss_dssp             CCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence            99999999999999999994   4799999999999999998 45556666555 5699999999999999999999999


Q ss_pred             EEECCCCceeeeecccccccEEEEEEcCCCC-EEEEEe--cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGN-IILTSG--RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      +||++++..+..+..+. ..|.+++|+|++. ++++++  .|+.|++||+.+++....+....     .+..++|+|++.
T Consensus       243 iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~-----~v~~~~~s~~~~  316 (401)
T 4aez_A          243 IWDARSSIPKFTKTNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS-----QVTSLIWSPHSK  316 (401)
T ss_dssp             EEETTCSSEEEEECCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS-----CEEEEEECSSSS
T ss_pred             EccCCCCCccEEecCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC-----cEEEEEECCCCC
Confidence            99999999988888776 8999999999775 555544  69999999999999888876432     345599999999


Q ss_pred             EEEE--EcCCCeEEEEeCCCcceee--cccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          454 YVAA--GSADGSVYIWSISKADIVR--TLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       454 ~l~~--~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|++  |+.||.|++||+.++....  .+.+|...|.+++|+|+|.+|++++.||.|++|+
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            9999  5589999999999865544  4678999999999999999999999999999996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.7e-39  Score=311.22  Aligned_cols=273  Identities=21%  Similarity=0.300  Sum_probs=235.6

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc--cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL--YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  304 (510)
                      .++.|+||++ ++|++|. |++|+|||..+++....+  .+|...|++++|+|+|++|++|+.||.|++||+.+++.+..
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            4788999975 4777776 899999999999886654  46788999999999999999999999999999999999999


Q ss_pred             ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCC
Q 010470          305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQT  382 (510)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~  382 (510)
                      +.+|...+.++.++   +.++++|+.|+.+++||.... ..+..+..+ ..+..+.++|++.++++++.||.+++||..+
T Consensus       185 ~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          185 MTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             ECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            99999999998875   579999999999999998864 344555554 4589999999999999999999999999987


Q ss_pred             Cce----eeeecccccccEEEEEEcCCCC-EEEE--EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470          383 GKL----LSEVAAHSLAAVTSISLSRSGN-IILT--SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       383 ~~~----~~~~~~~~~~~i~~i~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  455 (510)
                      ++.    +.....+. ..|.+++|+|.+. ++++  |+.|+.|++||+.++.....+..+...     ..+.|+|+++.+
T Consensus       262 ~~~~~~~~~~~~~~~-~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v-----~~~~~~~~~~~l  335 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV-----CSILWSPHYKEL  335 (420)
T ss_dssp             CSSCSCCSEEECCCS-SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCE-----EEEEEETTTTEE
T ss_pred             ccccceeeeeecccC-CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccce-----eeeeecCCCCeE
Confidence            653    33444444 8999999999765 4444  457899999999999998888766543     347899999988


Q ss_pred             EEEc--CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          456 AAGS--ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       456 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++++  .||.|+|||+.+++++..+.+|.+.|++++|+|+|.+|+||+.||+|+|||
T Consensus       336 v~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             EEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            8754  789999999999999999999999999999999999999999999999997

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.4e-39  Score=311.46  Aligned_cols=293  Identities=20%  Similarity=0.259  Sum_probs=246.4

Q ss_pred             cceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcceeccc-------------ccccceeEEEEec-CCC
Q 010470          216 TCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLY-------------GCLGSVLDLAITH-DNR  280 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~  280 (510)
                      .....+.+|.++|++++|+| ++++|++|+.||.|++||+.++.....+.             +|...|.+++|+| ++.
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            35667788999999999999 99999999999999999999887655543             5999999999999 778


Q ss_pred             EEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEE
Q 010470          281 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNAL  357 (510)
Q Consensus       281 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i  357 (510)
                      +|++++.||.|++||+.+++....+. +...+.++.++|..  +.++++++.||.|++||+.++..+..+..+ ..+.++
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV  192 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence            99999999999999999998888877 77889999999843  348999999999999999999888888755 569999


Q ss_pred             EEcCCCC-EEEEecCCCcEEEEECCCCc-eeeee---------------cccccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470          358 AFSMDGQ-TIFSGHIDGNLRLWDIQTGK-LLSEV---------------AAHSLAAVTSISLSRSGNIILTSGRDNLHNL  420 (510)
Q Consensus       358 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i  420 (510)
                      +|+|++. .+++|+.||.|++||++++. .+..+               ..+ ...|.+++|+|++.+|++++.||.|++
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH-NGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC-SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc-cCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            9999998 58899999999999998765 33333               233 378999999999999999999999999


Q ss_pred             EEcCCceeeeEeecCCCeeec-CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEE
Q 010470          421 FDIRSLEVCGSLRATGNRVAS-NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS  499 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  499 (510)
                      ||+.+++....+......... ..........+..+++++.+|.|++||+.+++++..+.+|..+|++++|+|++++|++
T Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  351 (408)
T 4a11_B          272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS  351 (408)
T ss_dssp             EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence            999988765544332221111 1111223344566777788999999999999999999999999999999999999999


Q ss_pred             eeCCCeEEEcC
Q 010470          500 ADKNGVVCVWT  510 (510)
Q Consensus       500 ~~~dg~i~iwd  510 (510)
                      ++.||.|++||
T Consensus       352 ~~~dg~i~iw~  362 (408)
T 4a11_B          352 GSRDCNILAWV  362 (408)
T ss_dssp             EETTSCEEEEE
T ss_pred             ECCCCeEEEEe
Confidence            99999999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.3e-39  Score=313.23  Aligned_cols=300  Identities=27%  Similarity=0.513  Sum_probs=264.2

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.||.+++|+...         ..+...+.+|.++|.+++|+  ++++++|+.||.|++||+.+++.+..+.+|
T Consensus       130 ~~l~sg~~dg~i~vwd~~~---------~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h  198 (445)
T 2ovr_B          130 NRIVSGSDDNTLKVWSAVT---------GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGH  198 (445)
T ss_dssp             TEEEEEETTSCEEEEETTT---------CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CEEEEEECCCcEEEEECCC---------CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCC
Confidence            3467788899999998543         34677889999999999998  569999999999999999999999999999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      ...|.++.|+  ++.+++++.||.|++||+.+++.+..+.+|...|.++.+   ++.++++++.||.|++||+.++.++.
T Consensus       199 ~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~  273 (445)
T 2ovr_B          199 TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLH  273 (445)
T ss_dssp             SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred             CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence            9999999995  678999999999999999999999999999999999998   56889999999999999999999998


Q ss_pred             eeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          347 TIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       347 ~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      .+..+ ..+.++.|  ++.++++|+.||.|++||+++++.+..+..+. ..+.++.+  +++++++++.||.|++||+++
T Consensus       274 ~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~  348 (445)
T 2ovr_B          274 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMEL--KDNILVSGNADSTVKIWDIKT  348 (445)
T ss_dssp             EECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred             EecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc-ccEEEEEE--eCCEEEEEeCCCeEEEEECCC
Confidence            88765 45888888  78999999999999999999999999888776 78888777  467999999999999999999


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc-----cccCcCEEEEEEeCCCCcEEEe
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL-----KEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      ++....+..+.. ....+.+++|  ++++|++|+.||.|++||+.+++.+..+     ..|.+.|.+++|+|++.+|++|
T Consensus       349 ~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~  425 (445)
T 2ovr_B          349 GQCLQTLQGPNK-HQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG  425 (445)
T ss_dssp             CCEEEEECSTTS-CSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             CcEEEEEccCCC-CCCCEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence            998888876321 1123344666  5789999999999999999999988877     4688899999999999999999


Q ss_pred             eCCCe----EEEcC
Q 010470          501 DKNGV----VCVWT  510 (510)
Q Consensus       501 ~~dg~----i~iwd  510 (510)
                      +.||.    |.+||
T Consensus       426 ~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          426 SRNGTEETKLLVLD  439 (445)
T ss_dssp             CSSSSSCCEEEEEE
T ss_pred             ccCCCCccEEEEEE
Confidence            99997    99986

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-38  Score=314.27  Aligned_cols=300  Identities=21%  Similarity=0.381  Sum_probs=259.5

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.||.+++|+...         .++...+.+|.++|++++|+|++ +|++|+.||+|++||+.+++.+..+.+|
T Consensus       133 ~~l~sgs~dg~i~vwd~~~---------~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h  202 (464)
T 3v7d_B          133 NYVITGADDKMIRVYDSIN---------KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH  202 (464)
T ss_dssp             TEEEEEETTSCEEEEETTT---------TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CEEEEEcCCCcEEEEECCC---------CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCC
Confidence            4567788999999998543         34677889999999999999988 9999999999999999999999999999


Q ss_pred             ccceeEEEEe--cCCCEEEEEeCCCeEEEEEcCCCCe-----------------------eEeecCCCCceEEEEEecCC
Q 010470          267 LGSVLDLAIT--HDNRSVIAASSSNNLYVWDVNSGRV-----------------------RHTLTGHTDKVCAVDVSKIS  321 (510)
Q Consensus       267 ~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~i~~~~~~  321 (510)
                      .+.|.+++|+  +++.++++++.||.|++||+.++..                       ...+.+|...|.++.  + +
T Consensus       203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~  279 (464)
T 3v7d_B          203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-H  279 (464)
T ss_dssp             SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-E
T ss_pred             CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-C
Confidence            9999999998  5778999999999999999987652                       456778999998874  4 6


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEE
Q 010470          322 SRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSI  400 (510)
Q Consensus       322 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i  400 (510)
                      +.++++++.||.|++||+.++.++..+..+ ..+.+++|+|+++++++|+.||.|++||+++++.+..+..|. ..|.++
T Consensus       280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~  358 (464)
T 3v7d_B          280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT-ALVGLL  358 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CcEEEE
Confidence            789999999999999999999999888765 559999999999999999999999999999999999998877 899999


Q ss_pred             EEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec-cc
Q 010470          401 SLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-LK  479 (510)
Q Consensus       401 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~  479 (510)
                      .|+  +.+|++++.||.|++||+.++......... ..    ...++|+|++.+|++|+ ||.|++||+.+++.+.. +.
T Consensus       359 ~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~----~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~  430 (464)
T 3v7d_B          359 RLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT-NL----SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL  430 (464)
T ss_dssp             EEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT-TC----CCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTT
T ss_pred             EEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC-CC----ccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhc
Confidence            997  589999999999999999987766555322 22    23378999999999998 89999999999999876 66


Q ss_pred             ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          480 EHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       480 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      .|..+|.+++|+ ++..+++++.||.+.+|
T Consensus       431 ~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          431 KDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             TTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             cCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            789999999997 34456667778776655

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-39  Score=308.35  Aligned_cols=249  Identities=18%  Similarity=0.237  Sum_probs=209.3

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceec----ccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSST----LYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      .....+|.+.|++++|+|++. +++++.||+|+|||+.+++....    ..+|.+.|++++|+|++++|++++.|+.|++
T Consensus        87 ~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i  165 (357)
T 4g56_B           87 CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV  165 (357)
T ss_dssp             CSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             ecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            344567999999999999985 55678899999999988765432    3479999999999999999999999999999


Q ss_pred             EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcCC-CCEEEEe
Q 010470          294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMD-GQTIFSG  369 (510)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~-~~~l~~~  369 (510)
                      ||+.+++.+..+.+|...|.+++|+|.+..++++++.||.|++||++++++...+...   ..+.+++|+|+ +.+|++|
T Consensus       166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g  245 (357)
T 4g56_B          166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG  245 (357)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence            9999999999999999999999999966678999999999999999998877665433   45899999997 5688899


Q ss_pred             cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE
Q 010470          370 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI  448 (510)
Q Consensus       370 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (510)
                      +.|+.|++||+++++.+..+..+. ..|++++|+|++ ++|++++.|+.|+|||+++++.+..+ .|...    +.+++|
T Consensus       246 ~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~----V~~vaf  319 (357)
T 4g56_B          246 DETGNVSLVNIKNPDSAQTSAVHS-QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF----VTGVAW  319 (357)
T ss_dssp             ESSSCEEEEESSCGGGCEEECCCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC----EEEEEE
T ss_pred             ecccceeEEECCCCcEeEEEeccc-eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC----EEEEEE
Confidence            999999999999999999988877 899999999987 57899999999999999999887655 44444    445999


Q ss_pred             cC-CCCEEEEEcCCCeEEEEeCCCcc
Q 010470          449 SP-DESYVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       449 s~-~~~~l~~~~~dg~i~iwd~~~~~  473 (510)
                      +| ++.+|++|+.||+|++|++.+..
T Consensus       320 sP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          320 SPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             CSSSTTEEEEEETTSCEEEEECC---
T ss_pred             eCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            98 89999999999999999997643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.4e-40  Score=311.42  Aligned_cols=277  Identities=12%  Similarity=0.115  Sum_probs=220.7

Q ss_pred             cceEEEEEecCCCEEEEeeCCC-------eEEEEeCCCCcce----------ecccccccceeEEEEecCCCEEEEEe--
Q 010470          226 GGCASILFEYNSARLISGGQDK-------SIKLWDTNTGSLS----------STLYGCLGSVLDLAITHDNRSVIAAS--  286 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg-------~i~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~~--  286 (510)
                      -||+|++|+|||++|++||.+.       .|++|++..+...          ..+.+|...|.+++++  ++.+++|+  
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            4899999999999999997643       5999998765321          2356777888877664  56677664  


Q ss_pred             ---------CCCeEEEEEcCCCCeeE----ee-----cCCCCceEEEEEecCCCCEEE--EEeCCCcEEEEECCCCeEee
Q 010470          287 ---------SSNNLYVWDVNSGRVRH----TL-----TGHTDKVCAVDVSKISSRHVV--SAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       287 ---------~d~~i~iwd~~~~~~~~----~~-----~~~~~~v~~i~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~  346 (510)
                               .|+.+++|++.+.....    ..     ..+...+.+++|+| ++.+++  +++.|++|++||+.++.++.
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                     46789999987654211    11     23445689999999 777765  44578999999999999999


Q ss_pred             eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee-cccccccEEEEEEcCCCCEEEEEecCC----cEEEE
Q 010470          347 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV-AAHSLAAVTSISLSRSGNIILTSGRDN----LHNLF  421 (510)
Q Consensus       347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~i~  421 (510)
                      .+..+..|.+++|+|+|+++++++.+ .+.+|+..++..+... ...+...|.+++|+|++.++++++.++    .+.+|
T Consensus       172 ~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          172 EIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             EeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            99888889999999999999999855 5677777777665433 333347899999999999999999887    68889


Q ss_pred             EcCCceee----eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec-ccccCcCEEEEEEeCCCCc
Q 010470          422 DIRSLEVC----GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-LKEHTAPVLSCSWSGLGKP  496 (510)
Q Consensus       422 d~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  496 (510)
                      ++......    ..+..+...    +.+++|+|+|++||+|+.||+|+|||+.+++++.. +.+|..+|++++|+|||++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~----V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~  326 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKG----ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY  326 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSC----EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred             ccccceecceeeeeecCCCCC----eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence            88765432    234444444    44599999999999999999999999999999887 4789999999999999999


Q ss_pred             EEEeeCCCeEEEcC
Q 010470          497 LASADKNGVVCVWT  510 (510)
Q Consensus       497 l~s~~~dg~i~iwd  510 (510)
                      |++|+.|++|+|||
T Consensus       327 laS~S~D~tvrvw~  340 (365)
T 4h5i_A          327 VASVSAANTIHIIK  340 (365)
T ss_dssp             EEEEETTSEEEEEE
T ss_pred             EEEEeCCCeEEEEE
Confidence            99999999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-39  Score=358.21  Aligned_cols=311  Identities=23%  Similarity=0.342  Sum_probs=269.7

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG  268 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  268 (510)
                      +++++.||.+++|+...         ......+.+|.+.|.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|..
T Consensus       630 l~s~~~d~~i~vw~~~~---------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  700 (1249)
T 3sfz_A          630 IASCGADKTLQVFKAET---------GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE  700 (1249)
T ss_dssp             EEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEEeCCCeEEEEECCC---------CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC
Confidence            44556677777777443         346778899999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEec--CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          269 SVLDLAITH--DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       269 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      .|.+++|+|  ++.++++++.||.|++||+.++++...+.+|.+.|.+++|+| ++.++++++.||.|++||+.++....
T Consensus       701 ~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~  779 (1249)
T 3sfz_A          701 QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERK  779 (1249)
T ss_dssp             CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred             cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccc
Confidence            999999999  556899999999999999999999999999999999999999 88999999999999999998775544


Q ss_pred             eee--------------------------------------------------------ecCceeEEEEcCCCCEEEEec
Q 010470          347 TII--------------------------------------------------------FHSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       347 ~~~--------------------------------------------------------~~~~i~~i~~~~~~~~l~~~~  370 (510)
                      .+.                                                        ....+.+++|+|++.++++++
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  859 (1249)
T 3sfz_A          780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL  859 (1249)
T ss_dssp             EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred             eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence            331                                                        123578999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee---------------------
Q 010470          371 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC---------------------  429 (510)
Q Consensus       371 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------------------  429 (510)
                      .+|.|++||+.++..+..+..|. ..|.+++|+|+|.+|++++.||.|++||+.+....                     
T Consensus       860 ~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  938 (1249)
T 3sfz_A          860 SQYCVELWNIDSRLKVADCRGHL-SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL  938 (1249)
T ss_dssp             SSSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred             CCCeEEEEEcCCCceeeecCCCc-cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence            99999999999999999888887 89999999999999999999999999997532110                     


Q ss_pred             --------eEeecCCC----eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcE
Q 010470          430 --------GSLRATGN----RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPL  497 (510)
Q Consensus       430 --------~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  497 (510)
                              ........    .....+.+++++|+|+++++|+.+|.|++|++.++.....+.+|...|.+++|+|+|++|
T Consensus       939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A          939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp             EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCE
T ss_pred             EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEE
Confidence                    00000000    011245678999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCeEEEcC
Q 010470          498 ASADKNGVVCVWT  510 (510)
Q Consensus       498 ~s~~~dg~i~iwd  510 (510)
                      ++++.||.|++||
T Consensus      1019 ~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A         1019 ISSSEDSVIQVWN 1031 (1249)
T ss_dssp             EEECSSSBEEEEE
T ss_pred             EEEcCCCEEEEEE
Confidence            9999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.5e-40  Score=319.24  Aligned_cols=278  Identities=18%  Similarity=0.266  Sum_probs=240.3

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  305 (510)
                      ..+++++|+|+|++|++|+.||.|++||+.++.....+..| ..+....|+|++++|++++.||.|++||+.+++....+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence            34568999999999999999999999999988887777766 45556678999999999999999999999999998888


Q ss_pred             cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 010470          306 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK  384 (510)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  384 (510)
                      .+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+..+ ..|.+++|+|++.+|++++.||.|++||+++++
T Consensus       136 ~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          136 QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            89999999999999 7889999999999999999999988888765 569999999999999999999999999999999


Q ss_pred             eeeeeccc--ccccEEE---------------------EEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec-CCCeee
Q 010470          385 LLSEVAAH--SLAAVTS---------------------ISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA-TGNRVA  440 (510)
Q Consensus       385 ~~~~~~~~--~~~~i~~---------------------i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~  440 (510)
                      .+..+..+  +...+.+                     ++|+|++++|++++.||.|++||++++.....+.. +..   
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---  291 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC---  291 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS---
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC---
Confidence            88887653  1234444                     44578999999999999999999999887776644 333   


Q ss_pred             cCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCcce-eecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          441 SNWSRSCISPDES-YVAAGSADGSVYIWSISKADI-VRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       441 ~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                       .+.+++|+|++. +|++|+.||.|++||+.+++. +..+.. |..+|.++.| |++.+|++++.||.|++||
T Consensus       292 -~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          292 -SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             -CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred             -CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence             345599999999 999999999999999998754 677766 6777888855 5778999999999999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.9e-40  Score=308.28  Aligned_cols=280  Identities=11%  Similarity=0.107  Sum_probs=243.8

Q ss_pred             eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc---ceecccccccceeEEEEecCCC-EEEEEeCCCeEEEE
Q 010470          219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS---LSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVW  294 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw  294 (510)
                      ....+|.+.|++++|+|++.+|++|+.||.|++|++.++.   ....+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3456899999999999999999999999999999998876   3455668999999999999999 99999999999999


Q ss_pred             Ec-CCCCeeEeecC--CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC---------CeEeeeeeecCceeEEEEcCC
Q 010470          295 DV-NSGRVRHTLTG--HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK---------GYCVNTIIFHSNCNALAFSMD  362 (510)
Q Consensus       295 d~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~i~~i~~~~~  362 (510)
                      |+ .+++. ..+.+  |...|.+++|+|  +..+++++.||.|++||+++         ++++..+.....+.+++|+|+
T Consensus        85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (342)
T 1yfq_A           85 DLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             CSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             EeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence            99 77655 67788  999999999998  78999999999999999987         777777776677999999988


Q ss_pred             CCEEEEecCCCcEEEEECCC-Cce-eeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCCc------eeeeEee
Q 010470          363 GQTIFSGHIDGNLRLWDIQT-GKL-LSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRSL------EVCGSLR  433 (510)
Q Consensus       363 ~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~  433 (510)
                      +  +++++.+|.|++||+++ +.. .......+...+.+++|+| ++.++++++.||.|++|++...      .....+.
T Consensus       162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  239 (342)
T 1yfq_A          162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence            7  89999999999999988 543 2223333347899999999 9999999999999999999876      6667776


Q ss_pred             cCCCe-----eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc-CcCEEEEEEeCCCCcEEEeeCCCe
Q 010470          434 ATGNR-----VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH-TAPVLSCSWSGLGKPLASADKNGV  505 (510)
Q Consensus       434 ~~~~~-----~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~  505 (510)
                      .+...     ....+.+++|+|++++|++|+.||.|++||+.+++.+..+.+| ..+|.+++  |++.+|++++.||.
T Consensus       240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            66441     1224566999999999999999999999999999999999998 99999999  99999999999998

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.6e-38  Score=313.06  Aligned_cols=280  Identities=22%  Similarity=0.375  Sum_probs=244.1

Q ss_pred             ceeeccccccce-EEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          217 CKHKINAHEGGC-ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       217 ~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      ....+.+|.+.| .++.|  ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++ ++++|+.||.|++||
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            456788999885 66655  56799999999999999999999999999999999999999988 999999999999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEec-CCCCEEEEEeCCCcEEEEECCCCeEee-----------------------eeeec
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSK-ISSRHVVSAAYDRTLKVWDLHKGYCVN-----------------------TIIFH  351 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------~~~~~  351 (510)
                      +.+++.+..+.+|...|.+++|++ .++.++++++.||.|++||+.++....                       .+..+
T Consensus       190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (464)
T 3v7d_B          190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  269 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred             CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence            999999999999999999999996 266899999999999999998765332                       22222


Q ss_pred             -CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee
Q 010470          352 -SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG  430 (510)
Q Consensus       352 -~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  430 (510)
                       ..+.+  +++++.++++|+.||.|++||+++++.+..+..+. ..|.+++|+|+++++++++.||.|++||+++++.+.
T Consensus       270 ~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          270 MASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  346 (464)
T ss_dssp             SSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence             22444  46789999999999999999999999999998876 899999999999999999999999999999999999


Q ss_pred             EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+..+...+..    ++++  +.+|++|+.||.|++||+.++....... |...+..++|+|++.+|++|+ ||.|++||
T Consensus       347 ~~~~h~~~v~~----~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          347 TLQGHTALVGL----LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             EECCCSSCEEE----EEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             EEeCCCCcEEE----EEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            99887766543    6665  6899999999999999999887665553 666788899999999999988 89999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.9e-39  Score=301.68  Aligned_cols=278  Identities=20%  Similarity=0.267  Sum_probs=241.9

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe--
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV--  301 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--  301 (510)
                      |.++|.+++|+|||++++++..++.+.+|............+|...|++++|+|+++++++++ ||.|++||+.++..  
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            567899999999999999998888888877665554445558999999999999999999999 99999999987653  


Q ss_pred             -eEeec--CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--Eeeeeeec-CceeEEEEcCCCCEEEEecCCCcE
Q 010470          302 -RHTLT--GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--CVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       302 -~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                       ...+.  .|...|.+++|+| ++.++++++.||.|++||+.++.  ....+..+ ..+.+++|+|+++++++++.||.|
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v  165 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence             33333  7899999999999 88999999999999999999887  44444444 459999999999999999999999


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  455 (510)
                      ++||+++++.+..+..+. ..+.+++|+|++++|++++.||.|++||+++++....+....     .+..++|+|++++|
T Consensus       166 ~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l  239 (337)
T 1gxr_A          166 AVWDLHNQTLVRQFQGHT-DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-----QIFSLGYCPTGEWL  239 (337)
T ss_dssp             EEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-----CEEEEEECTTSSEE
T ss_pred             EEEeCCCCceeeeeeccc-CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCC-----ceEEEEECCCCCEE
Confidence            999999999998888776 899999999999999999999999999999998877765332     34458999999999


Q ss_pred             EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          456 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       456 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++++.+|.|++||+.+++.. .+..|..+|.+++|+|++++|++++.||.|++||
T Consensus       240 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          240 AVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             EEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence            99999999999999887754 5667999999999999999999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.2e-39  Score=314.47  Aligned_cols=283  Identities=14%  Similarity=0.245  Sum_probs=232.2

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-----------ceecccccc------------cceeEEEEecCC
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-----------LSSTLYGCL------------GSVLDLAITHDN  279 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~  279 (510)
                      .|.+.|++++|+|+|++|++|+.||.|+|||+.++.           ....+.+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999999999999999999999999998876           467788898            889999999998


Q ss_pred             --CEEEEEeCCCeEEEEEcCCCCee---------------------------------------Ee-ecCCCCceEEEEE
Q 010470          280 --RSVIAASSSNNLYVWDVNSGRVR---------------------------------------HT-LTGHTDKVCAVDV  317 (510)
Q Consensus       280 --~~l~~~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~i~~  317 (510)
                        .+|++++.|+.|++||+.++...                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999999764331                                       12 3679999999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCC-CeEeeee--------eecCceeEEEEcCCC-CEEEEecCCCcEEEEECCCCce--
Q 010470          318 SKISSRHVVSAAYDRTLKVWDLHK-GYCVNTI--------IFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQTGKL--  385 (510)
Q Consensus       318 ~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~--------~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~--  385 (510)
                      +| ++.+|++| .||.|++||+.+ +.....+        .+...+.+++|+|++ .+|++|+.||.|++||+++++.  
T Consensus       186 ~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99 88899998 799999999984 4444432        223459999999998 9999999999999999999886  


Q ss_pred             --eeeeccccc-----------ccEEEEEEcCCCCEEEEEecCCcEEEEEcCC-ceeeeEeecCCCeee-----------
Q 010470          386 --LSEVAAHSL-----------AAVTSISLSRSGNIILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVA-----------  440 (510)
Q Consensus       386 --~~~~~~~~~-----------~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~-----------  440 (510)
                        +..+..+..           ..|.+++|+|+|.+|++++. +.|++||+++ ++.+..+..+.....           
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence              667776652           28999999999999999999 9999999997 887777776643221           


Q ss_pred             cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc--------------------------------cccCcCEEEE
Q 010470          441 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL--------------------------------KEHTAPVLSC  488 (510)
Q Consensus       441 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------------------~~~~~~v~~~  488 (510)
                      .....++|+|+|++|++|+.||.|++||+.+++.+...                                ..+...|.++
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  422 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT  422 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred             ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence            01223899999999999999999999999988764310                                0234578999


Q ss_pred             EEeCCCCcEEEeeCCCeEEEc
Q 010470          489 SWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       489 ~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      +|+|++++|++++.++ +++|
T Consensus       423 ~~~p~~~~la~~~~~~-~~~~  442 (447)
T 3dw8_B          423 AWHPKENIIAVATTNN-LYIF  442 (447)
T ss_dssp             EECSSSSEEEEECSSC-EEEE
T ss_pred             EECCCCCEEEEEecce-eeee
Confidence            9999999999998876 6665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.4e-39  Score=305.73  Aligned_cols=295  Identities=14%  Similarity=0.220  Sum_probs=248.7

Q ss_pred             cCCCccceeeccccccceEEEEEecC---CCEEEEeeCCCeEEEEeCCC-Ccce-ecccccccceeEEEEecCCCEEEEE
Q 010470          211 STVPSTCKHKINAHEGGCASILFEYN---SARLISGGQDKSIKLWDTNT-GSLS-STLYGCLGSVLDLAITHDNRSVIAA  285 (510)
Q Consensus       211 ~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~  285 (510)
                      ...|......+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +..+ ..+.+|...|++++|+|++++|+++
T Consensus        25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence            44677788899999999999999999   69999999999999999987 5444 6788999999999999999999999


Q ss_pred             eCCCeEEEEEcCCCCeeEeecCCCCceEEEEE--ecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCC
Q 010470          286 SSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDV--SKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDG  363 (510)
Q Consensus       286 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~  363 (510)
                      +.||.|++||+.+++... +..|...|.++.|  +| ++.+|++++.||.|++||+++++++..+..+..+.++.+.  +
T Consensus       105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~  180 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--Y  180 (368)
T ss_dssp             ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--T
T ss_pred             cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--C
Confidence            999999999999888766 5569999999999  66 7788999999999999999999999998888877777765  4


Q ss_pred             CEEEEecCCCcEEEEECCCCceee-eecccccccEEEEEEcCCCCE----EEEEecCCcEEEEEcCCc---eeeeEeecC
Q 010470          364 QTIFSGHIDGNLRLWDIQTGKLLS-EVAAHSLAAVTSISLSRSGNI----ILTSGRDNLHNLFDIRSL---EVCGSLRAT  435 (510)
Q Consensus       364 ~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~----l~~~~~d~~i~i~d~~~~---~~~~~~~~~  435 (510)
                      ..+++++.++.+.+||++...... .........+.++.+.+++..    +++++.||.|++||++..   .....+..+
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  260 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH  260 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence            578888899999999998765433 333333356677777666554    999999999999999876   445555544


Q ss_pred             CCe--------eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470          436 GNR--------VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVC  507 (510)
Q Consensus       436 ~~~--------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  507 (510)
                      ...        ....+.+++|+|++++|++|+.||.|++||+.+++++..+..|..+|.+++|+|+|.+|++++.|+..+
T Consensus       261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~  340 (368)
T 3mmy_A          261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSK  340 (368)
T ss_dssp             EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred             ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccc
Confidence            431        111466699999999999999999999999999999999999999999999999999999999987554


Q ss_pred             Ec
Q 010470          508 VW  509 (510)
Q Consensus       508 iw  509 (510)
                      .|
T Consensus       341 ~~  342 (368)
T 3mmy_A          341 GH  342 (368)
T ss_dssp             CG
T ss_pred             cc
Confidence            43

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.6e-39  Score=352.23  Aligned_cols=290  Identities=23%  Similarity=0.376  Sum_probs=262.9

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      .....+.+|.+.|++++|+|+|++|++|+.||.|++||+.++..+..+.+|.+.|.+++|+|+++++++++.||.|++||
T Consensus       606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD  685 (1249)
T ss_dssp             CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            34557889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCC
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDG  373 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg  373 (510)
                      +.+++.+..+.+|...|.++.|+|. +..++++|+.||.|++||+.++.++..+..+ ..+.+++|+|+++++++|+.||
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg  765 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG  765 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence            9999999999999999999999985 3458899999999999999999998888766 4599999999999999999999


Q ss_pred             cEEEEECCCCceeeeecccc------------cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee-cCCCeee
Q 010470          374 NLRLWDIQTGKLLSEVAAHS------------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR-ATGNRVA  440 (510)
Q Consensus       374 ~i~i~d~~~~~~~~~~~~~~------------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~  440 (510)
                      .|++||+.++.....+....            ...+.+++|+|+|..+++++ ++.+.+||+.++.....+. .+...  
T Consensus       766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~--  842 (1249)
T 3sfz_A          766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHST--  842 (1249)
T ss_dssp             EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSC--
T ss_pred             eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCc--
Confidence            99999999887766654321            13688999999999999987 6899999999988877765 33333  


Q ss_pred             cCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          441 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       441 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                        +..++|+|++.++++++.||.|++||+.++..+..+.+|.+.|.+++|+|+|.+|++++.||.|++||
T Consensus       843 --v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          843 --IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             --CCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             --eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence              44589999999999999999999999999999999999999999999999999999999999999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-39  Score=339.22  Aligned_cols=188  Identities=13%  Similarity=0.196  Sum_probs=162.0

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.||.+++|+...         ..+... ..|.++|.+++|+| |++|++++.|++|+|||+.+++.+..+. |
T Consensus        30 ~~lAsgs~Dg~I~lw~~~~---------~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~   97 (902)
T 2oaj_A           30 NLLAIATVTGEVHIYGQQQ---------VEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-V   97 (902)
T ss_dssp             TEEEEEETTSEEEEECSTT---------CEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-C
T ss_pred             CEEEEEeCCCEEEEEeCCC---------cEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-C
Confidence            4578889999999998543         112222 34788999999999 8899999999999999999998887775 6


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee-----------EeecCCCCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR-----------HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK  335 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~  335 (510)
                      .+.|++++|+|+++++++|+.||.|++||+.+++..           ..+.+|.+.|.+++|+|.+...+++|+.||.| 
T Consensus        98 ~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-  176 (902)
T 2oaj_A           98 PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-  176 (902)
T ss_dssp             SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred             CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence            789999999999999999999999999999987753           23467999999999999656789999999999 


Q ss_pred             EEECCCCeEeeeeeec-------------------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceee
Q 010470          336 VWDLHKGYCVNTIIFH-------------------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS  387 (510)
Q Consensus       336 iwd~~~~~~~~~~~~~-------------------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  387 (510)
                      +||+++++++..+..+                   ..|.+++|+|+|.+|++|+.||.|++||+++++.+.
T Consensus       177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            9999999988887655                   459999999999999999999999999998876554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.3e-38  Score=292.25  Aligned_cols=287  Identities=21%  Similarity=0.275  Sum_probs=236.5

Q ss_pred             CCccceeecccc--cc--ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc--cccccceeEEEEecCCCEEEEEe
Q 010470          213 VPSTCKHKINAH--EG--GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL--YGCLGSVLDLAITHDNRSVIAAS  286 (510)
Q Consensus       213 ~~~~~~~~~~~h--~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~  286 (510)
                      +|..+.+.|.+.  ..  .+++|+||+++ +|++|. |++|+|||+.+++.+..+  .+|...|++++|+|++++|++|+
T Consensus         9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs   86 (318)
T 4ggc_A            9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT   86 (318)
T ss_dssp             CCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE
Confidence            444555555432  22  35789999886 777665 999999999999987765  46788899999999999999999


Q ss_pred             CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-Eeeeeeec-CceeEEEEcCCCC
Q 010470          287 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-CVNTIIFH-SNCNALAFSMDGQ  364 (510)
Q Consensus       287 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-~~i~~i~~~~~~~  364 (510)
                      .||.|++||+.+++.+..+.+|...+.++.+.   +..+++++.++.+.+|+...+. .+..+..+ ..+..+.+++++.
T Consensus        87 ~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (318)
T 4ggc_A           87 SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR  163 (318)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred             CCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC
Confidence            99999999999999999999999999887664   5799999999999999998654 34444444 5589999999999


Q ss_pred             EEEEecCCCcEEEEECCCCcee----eeecccccccEEEEEEcCCCCEE---EEEecCCcEEEEEcCCceeeeEeecCCC
Q 010470          365 TIFSGHIDGNLRLWDIQTGKLL----SEVAAHSLAAVTSISLSRSGNII---LTSGRDNLHNLFDIRSLEVCGSLRATGN  437 (510)
Q Consensus       365 ~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l---~~~~~d~~i~i~d~~~~~~~~~~~~~~~  437 (510)
                      ++++++.||.|++||+++++..    .....+. +.|.++.++|++..+   ++++.++.|++||...............
T Consensus       164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~  242 (318)
T 4ggc_A          164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ  242 (318)
T ss_dssp             EEEEEETTSCEEEEESSCBTTBSCCSEEECCCC-SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred             EEEEEecCcceeEEECCCCcccccceeeecccC-CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee
Confidence            9999999999999999886533    2233333 789999999977643   3567789999999998877666544433


Q ss_pred             eeecCceeEEEcCCCCEEEEE--cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          438 RVASNWSRSCISPDESYVAAG--SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       438 ~~~~~~~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                           +..++++|++..++++  +.||.|++||+.+++++..+.+|.++|++++|+|+|++|+||+.||+|+|||
T Consensus       243 -----v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          243 -----VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             -----EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             -----eeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence                 2347899999987765  4799999999999999999999999999999999999999999999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.6e-38  Score=299.92  Aligned_cols=280  Identities=21%  Similarity=0.297  Sum_probs=224.5

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.|+.+++|+.....  .......+...+.+|.+.|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|
T Consensus        40 ~~l~sgs~D~~v~iWd~~~~~--~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h  117 (343)
T 2xzm_R           40 PVLISGSRDKTVMIWKLYEEE--QNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH  117 (343)
T ss_dssp             CEEEEEETTSCEEEEEECSSC--CSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred             CEEEEEcCCCEEEEEECCcCC--cccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            357888999999999854311  001122356778999999999999999999999999999999999999999999999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee---cCCCCceEEEEEecCC---------CCEEEEEeCCCcE
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL---TGHTDKVCAVDVSKIS---------SRHVVSAAYDRTL  334 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~---------~~~l~s~~~dg~i  334 (510)
                      ...|.+++|+|++++|++++.|+.|++||+.. ......   .+|...|.++.|+|..         +.++++++.||.|
T Consensus       118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  196 (343)
T 2xzm_R          118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL  196 (343)
T ss_dssp             CSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence            99999999999999999999999999999874 333333   3788999999999943         2689999999999


Q ss_pred             EEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCC-CceeeeecccccccEEEEEEcCCCCEEEEE
Q 010470          335 KVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQT-GKLLSEVAAHSLAAVTSISLSRSGNIILTS  412 (510)
Q Consensus       335 ~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  412 (510)
                      ++||. .+.....+..+ ..+.+++|+|+|++|++|+.||.|++||+.. ......+...  ..|.+++|+|++.+++++
T Consensus       197 ~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--~~v~~v~~sp~~~~la~~  273 (343)
T 2xzm_R          197 KVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG--STINQIAFNPKLQWVAVG  273 (343)
T ss_dssp             EEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECS--SCEEEEEECSSSCEEEEE
T ss_pred             EEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCC--CcEEEEEECCCCCEEEEE
Confidence            99995 45666666555 5699999999999999999999999999954 3444444332  579999999999887655


Q ss_pred             ecCCcEEEEEcCCceeee--EeecCC-------CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470          413 GRDNLHNLFDIRSLEVCG--SLRATG-------NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       413 ~~d~~i~i~d~~~~~~~~--~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  473 (510)
                       .|+.|++||+.++....  .+....       ......+.+++|+|+|++|++|+.||.|++|++.++.
T Consensus       274 -~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          274 -TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             -ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             -CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence             67889999998766543  322110       0122335669999999999999999999999987653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9e-39  Score=301.62  Aligned_cols=281  Identities=20%  Similarity=0.248  Sum_probs=224.0

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceeccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLY  264 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~  264 (510)
                      ..+++++.|+.+++|+......      ........+|.+.|.+++|+|+|++|++|+.|+.|++|++.++.  .+..+.
T Consensus        29 ~~las~~~D~~i~iw~~~~~~~------~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  102 (345)
T 3fm0_A           29 TLLASCGGDRRIRIWGTEGDSW------ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE  102 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTEE------EEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEEcCCCcc------eeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence            4577889999999998543110      00112347899999999999999999999999999999988764  567888


Q ss_pred             ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470          265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      +|...|.+++|+|++++|++++.|+.|++||+.++.   ++..+.+|...|.+++|+| ++.+|++++.|+.|++||..+
T Consensus       103 ~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEE  181 (345)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEET
T ss_pred             CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecC
Confidence            999999999999999999999999999999998764   4567889999999999999 889999999999999999988


Q ss_pred             CeE--eeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCC---------------ceeeeecccccccEEEEEEc
Q 010470          342 GYC--VNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG---------------KLLSEVAAHSLAAVTSISLS  403 (510)
Q Consensus       342 ~~~--~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~---------------~~~~~~~~~~~~~i~~i~~~  403 (510)
                      +..  ...+..+ ..|.+++|+|+|++|++|+.||.|++||...+               +.+..+...+...|.+++|+
T Consensus       182 ~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~  261 (345)
T 3fm0_A          182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC  261 (345)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC
T ss_pred             CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe
Confidence            753  3455544 56999999999999999999999999996432               22334444344789999999


Q ss_pred             CCCCEEEEEecCCcEEEEEcCCcee----ee-----EeecCCCeeecCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCcc
Q 010470          404 RSGNIILTSGRDNLHNLFDIRSLEV----CG-----SLRATGNRVASNWSRSCISPDE-SYVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       404 ~~~~~l~~~~~d~~i~i~d~~~~~~----~~-----~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~  473 (510)
                      |++..|++++.|+.|++|+......    ..     ....|..    .+.+++|+|++ .+|++|+.||+|++|++.+++
T Consensus       262 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~----~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          262 QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ----DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             TTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS----CEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             cCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC----cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            9999999999999999999875421    11     1123333    45569999998 599999999999999998877


Q ss_pred             eeecc
Q 010470          474 IVRTL  478 (510)
Q Consensus       474 ~~~~~  478 (510)
                      ....+
T Consensus       338 ~~~~~  342 (345)
T 3fm0_A          338 GLHHH  342 (345)
T ss_dssp             -----
T ss_pred             Ccccc
Confidence            65443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5e-38  Score=292.61  Aligned_cols=270  Identities=26%  Similarity=0.488  Sum_probs=238.7

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.||.+++|+...         ......+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|
T Consensus        36 ~~l~s~~~dg~i~iw~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  106 (312)
T 4ery_A           36 EWLASSSADKLIKIWGAYD---------GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH  106 (312)
T ss_dssp             SEEEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEeeCCCeEEEEeCCC---------cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC
Confidence            3467778899999997433         3456778899999999999999999999999999999999999999999999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      ...|.+++|+|+++++++++.|+.|++||+.+++.+..+..|..+|.++.|+| ++.++++++.||.|++||+++++.+.
T Consensus       107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~  185 (312)
T 4ery_A          107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLK  185 (312)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceee
Confidence            99999999999999999999999999999999999999999999999999999 88999999999999999999998887


Q ss_pred             eeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccc--cEEEEEEcCCCCEEEEEecCCcEEEEE
Q 010470          347 TIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA--AVTSISLSRSGNIILTSGRDNLHNLFD  422 (510)
Q Consensus       347 ~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~i~d  422 (510)
                      .+...  ..+.+++|+|++++|++++.||.|++||+++++.+..+..+...  .+......+++.+|++++.||.|++||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd  265 (312)
T 4ery_A          186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN  265 (312)
T ss_dssp             EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEE
T ss_pred             EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEE
Confidence            76543  45899999999999999999999999999999998888766521  223333446789999999999999999


Q ss_pred             cCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc--CCCeEEEEeCC
Q 010470          423 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS--ADGSVYIWSIS  470 (510)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~  470 (510)
                      +.+++.+..+.+|...+..    ++|+|++.++++++  .||.|++|+.+
T Consensus       266 ~~~~~~~~~~~~h~~~v~~----~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          266 LQTKEIVQKLQGHTDVVIS----TACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             TTTCCEEEEECCCSSCEEE----EEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             CCCchhhhhhhccCCcEEE----EeecCcCCceEEEEccCCccEEEecCC
Confidence            9999999999888766554    89999999999986  69999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-38  Score=297.49  Aligned_cols=272  Identities=19%  Similarity=0.292  Sum_probs=213.2

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeec-cc-cccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-------Cc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKI-NA-HEGGCASILFEYNSARLISGGQDKSIKLWDTNT-------GS  258 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-------~~  258 (510)
                      .+++++.|+.+++|+....       .......+ .+ |.+.|.+++|+|++++|++|+.|++|+|||+..       ..
T Consensus        26 ~las~~~D~~i~lw~~~~~-------~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~   98 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYD-------DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD   98 (330)
T ss_dssp             EEEEEESSSCEEEEECSSS-------CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCE
T ss_pred             EEEEEcCCCEEEEEEecCC-------CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccce
Confidence            5778899999999985431       11233444 34 999999999999999999999999999999853       34


Q ss_pred             ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC----CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcE
Q 010470          259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL  334 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i  334 (510)
                      .+..+.+|...|.+++|+|++++|++++.|+.|++||+...    +++..+.+|...|.++.|+| ++.+|++++.|++|
T Consensus        99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i  177 (330)
T 2hes_X           99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTV  177 (330)
T ss_dssp             EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCE
T ss_pred             eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeE
Confidence            56678899999999999999999999999999999999432    46678899999999999999 88999999999999


Q ss_pred             EEEECCCC--eEeeeeeec-CceeEEEEcCC--CCEEEEecCCCcEEEEECCCC--------ceeeeecccccccEEEEE
Q 010470          335 KVWDLHKG--YCVNTIIFH-SNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTG--------KLLSEVAAHSLAAVTSIS  401 (510)
Q Consensus       335 ~iwd~~~~--~~~~~~~~~-~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~i~~i~  401 (510)
                      ++||..++  .++..+..+ ..|.+++|+|+  +..|++|+.||+|++||+..+        .....+...+...|.+++
T Consensus       178 ~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  257 (330)
T 2hes_X          178 RIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVA  257 (330)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEE
T ss_pred             EEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEE
Confidence            99998776  566777655 46999999998  778999999999999998754        334444443448999999


Q ss_pred             EcCCCCEEEEEecCCcEEEEEcCCcee--eeEe-ecCCCeeecCceeEEEcC--CCCEEEEEcCCCeEEEEeCCC
Q 010470          402 LSRSGNIILTSGRDNLHNLFDIRSLEV--CGSL-RATGNRVASNWSRSCISP--DESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       402 ~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      |++++ +|++++.||.|++||..++..  .... ..+..   ..+.+++|+|  ++++|++|+.||+|++|++..
T Consensus       258 ~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~---~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          258 WGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGV---YEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTT---SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccccc---ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            99765 899999999999999987642  2222 23332   1344589999  789999999999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4e-38  Score=321.58  Aligned_cols=305  Identities=20%  Similarity=0.297  Sum_probs=253.5

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeecccccc---ceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCcceecc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEG---GCASILFEYN-SARLISGGQDKSIKLWDTNTGSLSSTL  263 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~  263 (510)
                      .+++++.|+.+++|+...         ..+...+.+|.+   .|++++|+|+ +++|++++.||.|++||+.+++.+..+
T Consensus       175 ~l~~~~~d~~v~vwd~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPP---------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             EEEEEETTTEEEEEETTT---------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             EEEEEeCCCcEEEEeCCC---------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            466778889999998432         456778889999   9999999999 999999999999999999999998888


Q ss_pred             -c---ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC----CCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470          264 -Y---GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH----TDKVCAVDVSKISSRHVVSAAYDRTLK  335 (510)
Q Consensus       264 -~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~s~~~dg~i~  335 (510)
                       .   .|...|.+++|+ ++.+|++++.||.|++||+.+++.+..+..+    ...+.++.|.  ++.++++++.||.|+
T Consensus       246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~  322 (615)
T 1pgu_A          246 EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--GNGRIISLSLDGTLN  322 (615)
T ss_dssp             CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--ETTEEEEEETTSCEE
T ss_pred             cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC--CCCeEEEEECCCCEE
Confidence             6   899999999999 9999999999999999999999998888776    4677888884  688999999999999


Q ss_pred             EEECCCCeEeeeeeecC-ceeE---------------------------------EEE----------------------
Q 010470          336 VWDLHKGYCVNTIIFHS-NCNA---------------------------------LAF----------------------  359 (510)
Q Consensus       336 iwd~~~~~~~~~~~~~~-~i~~---------------------------------i~~----------------------  359 (510)
                      +||+.++..+..+..+. .+.+                                 ++|                      
T Consensus       323 ~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~  402 (615)
T 1pgu_A          323 FYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK  402 (615)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEE
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEccc
Confidence            99998776665554321 1222                                 222                      


Q ss_pred             ------------cCC--------------------------------------CCEEEEecC-CCcEEEEECCCCcee-e
Q 010470          360 ------------SMD--------------------------------------GQTIFSGHI-DGNLRLWDIQTGKLL-S  387 (510)
Q Consensus       360 ------------~~~--------------------------------------~~~l~~~~~-dg~i~i~d~~~~~~~-~  387 (510)
                                  +|+                                      +.++++++. ||.|++||+.++... .
T Consensus       403 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~  482 (615)
T 1pgu_A          403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD  482 (615)
T ss_dssp             EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred             CcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccccc
Confidence                        111                                      445555555 666666666655443 3


Q ss_pred             eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec-CCCeeecCceeEEEcC----------CCCEEE
Q 010470          388 EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA-TGNRVASNWSRSCISP----------DESYVA  456 (510)
Q Consensus       388 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~----------~~~~l~  456 (510)
                      .+..+. ..|.+++|+|++++|++++.||.|++||+.+++.+..+.. +...+    .+++|+|          ++++|+
T Consensus       483 ~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v----~~~~~sp~~~~~~~~~~~~~~l~  557 (615)
T 1pgu_A          483 LKTPLR-AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI----NAISWKPAEKGANEEEIEEDLVA  557 (615)
T ss_dssp             CSSCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE----EEEEECCCC------CCSCCEEE
T ss_pred             ccCCcc-CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCce----eEEEEcCccccccccccCCCEEE
Confidence            344444 7899999999999999999999999999999998887765 55444    4599999          999999


Q ss_pred             EEcCCCeEEEEeCCCc-ceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          457 AGSADGSVYIWSISKA-DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       457 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|+.||.|++||+.++ +++..+.+|...|++++|+|++. |++++.||.|++|+
T Consensus       558 ~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          558 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN  611 (615)
T ss_dssp             EEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             EEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence            9999999999999998 78888999999999999999999 99999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.4e-38  Score=321.24  Aligned_cols=302  Identities=14%  Similarity=0.240  Sum_probs=262.7

Q ss_pred             CceEEecccccccccccCCCccceeeccccccc-eEEEEEec--CCCEEEEeeCCCeEEEEeCCCC--------cceecc
Q 010470          195 DGVVRRSEEGAEFFAESTVPSTCKHKINAHEGG-CASILFEY--NSARLISGGQDKSIKLWDTNTG--------SLSSTL  263 (510)
Q Consensus       195 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~  263 (510)
                      ++.+.+|+...     ...+......+.+|.+. |++++|+|  ++++|++|+.||.|++||+.++        .....+
T Consensus        38 ~~~v~v~~~~~-----~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~  112 (615)
T 1pgu_A           38 GKSAFVRCLDD-----GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF  112 (615)
T ss_dssp             TTEEEEEECCS-----SCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             CCeEEEEECCC-----CCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh
Confidence            66777777432     11222577889999999 99999999  9999999999999999999755        667778


Q ss_pred             cccccceeEEEEecCCCEEEEEeCC----CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSS----NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL  339 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~  339 (510)
                      ..|...|.+++|+|++++|++++.+    +.|++||  .++....+.+|...|.++.|+|.+...+++++.||.|++||+
T Consensus       113 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~  190 (615)
T 1pgu_A          113 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG  190 (615)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred             hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC
Confidence            8899999999999999999999987    6888887  677888999999999999999944448999999999999999


Q ss_pred             CCCeEeeeeeecC----ceeEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeee-c---ccccccEEEEEEcCCCCEEE
Q 010470          340 HKGYCVNTIIFHS----NCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEV-A---AHSLAAVTSISLSRSGNIIL  410 (510)
Q Consensus       340 ~~~~~~~~~~~~~----~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~~i~~i~~~~~~~~l~  410 (510)
                      .+++.+..+..+.    .+.+++|+|+ +++|++++.||.|++||+++++.+..+ .   .+. ..|.+++|+ ++.+|+
T Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~  268 (615)
T 1pgu_A          191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ-GGIFALSWL-DSQKFA  268 (615)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC-SCEEEEEES-SSSEEE
T ss_pred             CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccC-CceEEEEEc-CCCEEE
Confidence            9999998888664    5999999999 999999999999999999999999888 4   444 899999999 999999


Q ss_pred             EEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEE
Q 010470          411 TSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW  490 (510)
Q Consensus       411 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  490 (510)
                      +++.|+.|++||+++++....+..+.......+..+.++ ++.++++++.||.|++||+.+++.+..+.+|..+|.+++|
T Consensus       269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~  347 (615)
T 1pgu_A          269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV  347 (615)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence            999999999999999999888887755444455556665 8999999999999999999999999999999999999998


Q ss_pred             eCCCCcEEEeeCCCeEEEcC
Q 010470          491 SGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       491 ~~~~~~l~s~~~dg~i~iwd  510 (510)
                       |+   |++++.||.|++||
T Consensus       348 -~~---l~~~~~dg~i~~w~  363 (615)
T 1pgu_A          348 -NP---LISGSYDGRIMEWS  363 (615)
T ss_dssp             -TT---TEEEETTSCEEETT
T ss_pred             -cC---cEEECCCCeEEEEE
Confidence             77   77777777777775

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.3e-39  Score=302.09  Aligned_cols=287  Identities=17%  Similarity=0.240  Sum_probs=223.4

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC----cceecccccccceeEEEEec--CCCEEEEEeCCCeE
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNL  291 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i  291 (510)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+.++    .....+.+|...|++++|+|  ++.+|++++.||.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            3456899999999999999999999999999999999876    35667789999999999999  69999999999999


Q ss_pred             EEEEcCCC---------CeeEeecCCCCceEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEeeeee-----------
Q 010470          292 YVWDVNSG---------RVRHTLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKGYCVNTII-----------  349 (510)
Q Consensus       292 ~iwd~~~~---------~~~~~~~~~~~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------  349 (510)
                      ++||+.++         +....+..|...|.+++|+| +  +.++++++.||.|++||++++..+..+.           
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            99999887         55778889999999999999 6  8899999999999999998876554432           


Q ss_pred             ---ecCceeEEEEcCC---CCEEEEecCCCcEEEEECCCCce--eeeecccccccEEEEEEcCCC----CEEEEEecCCc
Q 010470          350 ---FHSNCNALAFSMD---GQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSG----NIILTSGRDNL  417 (510)
Q Consensus       350 ---~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~  417 (510)
                         ....+.+++|+|+   +..+++++.++.+.+|+...+..  +..+..|. ..|.+++|+|++    ++|++++.||.
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK-SLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCC-SCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCC-cceeEEEECCCCCCcceEEEEEcCCCe
Confidence               2245899999997   99999999999998888877765  55565665 899999999998    89999999999


Q ss_pred             EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE----cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCC
Q 010470          418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG----SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  493 (510)
                      |++||++.+...............    ...++....+..+    ...+.+.+|+....+.+..+.+|...|++++|+|+
T Consensus       242 i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          242 IRIFKITEKLSPLASEESLTNSNM----FDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             EEEEEEEECC-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred             EEEEeCCCCcCccccCCcccceec----cCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence            999999876443332222221111    2233333333333    34456777777778888999999999999999999


Q ss_pred             CCcEEEeeCCCeEEEcC
Q 010470          494 GKPLASADKNGVVCVWT  510 (510)
Q Consensus       494 ~~~l~s~~~dg~i~iwd  510 (510)
                      +++|++++.||.|++||
T Consensus       318 ~~~l~s~~~dg~v~iw~  334 (351)
T 3f3f_A          318 GTILSSAGDDGKVRLWK  334 (351)
T ss_dssp             SCCEEEEETTSCEEEEE
T ss_pred             CCEEEEecCCCcEEEEe
Confidence            99999999999999996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.5e-38  Score=306.92  Aligned_cols=272  Identities=26%  Similarity=0.487  Sum_probs=242.9

Q ss_pred             eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      ....+|..+|.|+.|  ++++|++|+.||.|++||+.+++....+.+|.+.|.+++|  +++++++|+.||.|++||+.+
T Consensus       127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            344567788999887  7899999999999999999999999999999999999998  788999999999999999999


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe---eeeeec-CceeEEEEcCCCCEEEEecCCCc
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV---NTIIFH-SNCNALAFSMDGQTIFSGHIDGN  374 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~  374 (510)
                      ++.+..+.+|...|.++.|++   ..+++|+.||.|++||+.++...   ..+..+ ..+.++++  +++++++|+.||.
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~  277 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT  277 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             CcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence            999999999999999999964   59999999999999999887655   333333 45888888  7899999999999


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      |++||+++++.+..+..+. ..+.++.+  ++.++++++.||.|++||++++..+..+..+...+..    +++  ++.+
T Consensus       278 i~vwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~----~~~--~~~~  348 (435)
T 1p22_A          278 IKVWNTSTCEFVRTLNGHK-RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC----IRF--DNKR  348 (435)
T ss_dssp             EEEEETTTCCEEEEEECCS-SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE----EEC--CSSE
T ss_pred             EEEEECCcCcEEEEEcCCC-CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEE----EEe--cCCE
Confidence            9999999999999998877 88999998  4789999999999999999999999998887766543    555  8999


Q ss_pred             EEEEcCCCeEEEEeCCCcc---------eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          455 VAAGSADGSVYIWSISKAD---------IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |++|+.||.|++||+.++.         .+..+.+|.++|.+++|  ++.+|++++.||.|++||
T Consensus       349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence            9999999999999998776         77888899999999999  778999999999999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5e-38  Score=290.08  Aligned_cols=249  Identities=18%  Similarity=0.273  Sum_probs=207.8

Q ss_pred             eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC--CcceecccccccceeEEEEecC--CCEEEEEeCCCeEEEE
Q 010470          219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT--GSLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLYVW  294 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iw  294 (510)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.+  .+.+.++.+|.++|.+++|+|+  +++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45789999999999999999999999999999999974  4667889999999999999864  8999999999999999


Q ss_pred             EcCCCC--eeEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeE--eeeeeec-CceeEEEEcCC------
Q 010470          295 DVNSGR--VRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYC--VNTIIFH-SNCNALAFSMD------  362 (510)
Q Consensus       295 d~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~i~~i~~~~~------  362 (510)
                      |+.+++  .+..+.+|...|.+++|+|.. +.+|++++.||.|++||++++..  ...+..+ ..+.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998874  566778899999999999942 78999999999999999987632  2333333 46999999997      


Q ss_pred             -------CCEEEEecCCCcEEEEECCCCc----eeeeecccccccEEEEEEcCCC---CEEEEEecCCcEEEEEcCCcee
Q 010470          363 -------GQTIFSGHIDGNLRLWDIQTGK----LLSEVAAHSLAAVTSISLSRSG---NIILTSGRDNLHNLFDIRSLEV  428 (510)
Q Consensus       363 -------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~d~~i~i~d~~~~~~  428 (510)
                             +++|++|+.||.|++||++++.    ....+..|. ..|.+++|+|++   .+|++++.|+.|++||+.+...
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~-~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~  241 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG  241 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC-CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence                   5799999999999999998766    455666666 899999999985   8999999999999999986431


Q ss_pred             ---eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          429 ---CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       429 ---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                         ...+.  .......+..++|+|+|++|++++.||.|++|+..
T Consensus       242 ~~~~~~~~--~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          242 PWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CCEEEESS--SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ccceeeee--cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence               11221  11122345569999999999999999999999976

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-37  Score=303.76  Aligned_cols=275  Identities=25%  Similarity=0.525  Sum_probs=246.1

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      ....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+  ++++++++.||.|++||+
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~  186 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA  186 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence            44678899987533 355568999999999999999999999999999999999999997  679999999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcE
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                      .+++.+..+.+|...|.++.++   +..+++|+.||.|++||+.+++.+..+..+ ..+.++.+  ++.++++|+.||.|
T Consensus       187 ~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i  261 (445)
T 2ovr_B          187 ETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMV  261 (445)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCE
T ss_pred             CcCcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEE
Confidence            9999999999999999999995   467999999999999999999998888766 45888888  78899999999999


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  455 (510)
                      ++||+++++.+..+..+. ..|.++.|  ++.++++++.||.|++||+++++.+..+..+...+.      +++++++++
T Consensus       262 ~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~------~~~~~~~~l  332 (445)
T 2ovr_B          262 KVWDPETETCLHTLQGHT-NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS------GMELKDNIL  332 (445)
T ss_dssp             EEEEGGGTEEEEEECCCS-SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE------EEEEETTEE
T ss_pred             EEEECCCCcEeEEecCCC-CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE------EEEEeCCEE
Confidence            999999999999988776 89999999  789999999999999999999999888877765543      455578899


Q ss_pred             EEEcCCCeEEEEeCCCcceeecccc---cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          456 AAGSADGSVYIWSISKADIVRTLKE---HTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       456 ~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++|+.||.|++||+.+++.+..+..   |..+|.+++|+  +.+|++|+.||.|++||
T Consensus       333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence            9999999999999999999888876   88899999995  57999999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.7e-38  Score=300.39  Aligned_cols=242  Identities=24%  Similarity=0.432  Sum_probs=213.5

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  304 (510)
                      ...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.+++....
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence            34599999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee--------ecCceeEEEEcCCCCEEEEecCCCcEE
Q 010470          305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII--------FHSNCNALAFSMDGQTIFSGHIDGNLR  376 (510)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~dg~i~  376 (510)
                      +. +...+.+++|+|.++.+|++|+.||.|++||+.++..+..+.        +...|.+++|+|+|.+|++|+.||.|+
T Consensus       203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          203 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK  281 (393)
T ss_dssp             EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            76 567899999999788999999999999999999998877662        234599999999999999999999999


Q ss_pred             EEECCCCc------------eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470          377 LWDIQTGK------------LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS  444 (510)
Q Consensus       377 i~d~~~~~------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  444 (510)
                      +||+++..            ....+..|. ..|.+++|+|++.+|++++.|+.|++||+.+++.+..+.+|...+..   
T Consensus       282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~---  357 (393)
T 1erj_A          282 LWNLQNANNKSDSKTPNSGTCEVTYIGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS---  357 (393)
T ss_dssp             EEEC---------------CEEEEEECCS-SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE---
T ss_pred             EEECCCCCCcccccCCCCCcceEEEeccc-CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEE---
Confidence            99997642            344555565 78999999999999999999999999999999999999888776654   


Q ss_pred             eEEEcC------CCCEEEEEcCCCeEEEEeCCCc
Q 010470          445 RSCISP------DESYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       445 ~~~~s~------~~~~l~~~~~dg~i~iwd~~~~  472 (510)
                       ++|++      ++++|++|+.||+|+||++...
T Consensus       358 -v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          358 -VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             -EEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             -EEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence             77765      7899999999999999997643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-38  Score=329.80  Aligned_cols=306  Identities=17%  Similarity=0.185  Sum_probs=239.4

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce-------
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS-------  260 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------  260 (510)
                      .+++++.|+.+++|+...         ..+...+. |.+.|++++|+|++++|++|+.||.|++||+.++...       
T Consensus        71 ~L~S~s~D~~v~lWd~~~---------~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~  140 (902)
T 2oaj_A           71 YLVVINAKDTVYVLSLYS---------QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL  140 (902)
T ss_dssp             EEEEEETTCEEEEEETTT---------CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred             EEEEEECcCeEEEEECCC---------CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc
Confidence            367788999999998543         23445554 6789999999999999999999999999999988753       


Q ss_pred             ----ecccccccceeEEEEecC-CCEEEEEeCCCeEEEEEcCCCCeeEeecCC------------------CCceEEEEE
Q 010470          261 ----STLYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWDVNSGRVRHTLTGH------------------TDKVCAVDV  317 (510)
Q Consensus       261 ----~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~i~~  317 (510)
                          ..+.+|.++|++++|+|+ +..+++|+.||.| +||+.++++...+..|                  ...|.+++|
T Consensus       141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f  219 (902)
T 2oaj_A          141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY  219 (902)
T ss_dssp             HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred             cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence                345679999999999996 4789999999999 9999999988888765                  577999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCCeEeee--ee-----------------ecCceeEEE--------------------
Q 010470          318 SKISSRHVVSAAYDRTLKVWDLHKGYCVNT--II-----------------FHSNCNALA--------------------  358 (510)
Q Consensus       318 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~-----------------~~~~i~~i~--------------------  358 (510)
                      +| ++.+|++++.||.|++||+++++++..  +.                 ....|.+++                    
T Consensus       220 sp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~  298 (902)
T 2oaj_A          220 HP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS  298 (902)
T ss_dssp             CT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred             cC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence            99 799999999999999999976654321  00                 000111111                    


Q ss_pred             --------------------------------------------------------------------------------
Q 010470          359 --------------------------------------------------------------------------------  358 (510)
Q Consensus       359 --------------------------------------------------------------------------------  358 (510)
                                                                                                      
T Consensus       299 ~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~  378 (902)
T 2oaj_A          299 RGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET  378 (902)
T ss_dssp             TSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred             CCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------EcCCCCEEEEecCCCc
Q 010470          359 ----------------------------------------------------------------FSMDGQTIFSGHIDGN  374 (510)
Q Consensus       359 ----------------------------------------------------------------~~~~~~~l~~~~~dg~  374 (510)
                                                                                      |+|++++|++|+.||+
T Consensus       379 ~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dgt  458 (902)
T 2oaj_A          379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGS  458 (902)
T ss_dssp             EETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSE
T ss_pred             EECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCc
Confidence                                                                            2345566777777777


Q ss_pred             EEEEECCCCceee--eec--------ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce-----------------
Q 010470          375 LRLWDIQTGKLLS--EVA--------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE-----------------  427 (510)
Q Consensus       375 i~i~d~~~~~~~~--~~~--------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------------  427 (510)
                      |++||+.++....  .+.        ..+...|.+++|+|+|++|++|+.||+|+|||+.+++                 
T Consensus       459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~  538 (902)
T 2oaj_A          459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF  538 (902)
T ss_dssp             EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred             EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence            7777776653210  010        0223689999999999999999999999999997652                 


Q ss_pred             ----------------------------eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee---
Q 010470          428 ----------------------------VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR---  476 (510)
Q Consensus       428 ----------------------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---  476 (510)
                                                  ++..+..|...    +.+++||||| +||+|+.||+|++||+.++..+.   
T Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~----V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~  613 (902)
T 2oaj_A          539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK----TSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMEN  613 (902)
T ss_dssp             CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS----EEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eeccccCCccccccccccCCCCCCCccceeEEEEcCCCc----EEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEee
Confidence                                        23444444444    4559999999 99999999999999998876543   


Q ss_pred             --ccc-ccCcCEEEEEEe-----CCC---CcEEEeeCCCeEEEcC
Q 010470          477 --TLK-EHTAPVLSCSWS-----GLG---KPLASADKNGVVCVWT  510 (510)
Q Consensus       477 --~~~-~~~~~v~~~~~~-----~~~---~~l~s~~~dg~i~iwd  510 (510)
                        .+. +|.+.|++++|+     |||   .+|++|+.||+|++||
T Consensus       614 ~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          614 IREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK  658 (902)
T ss_dssp             GGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred             hhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence              454 899999999999     886   7999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.6e-38  Score=329.35  Aligned_cols=308  Identities=19%  Similarity=0.248  Sum_probs=264.7

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..++.+..+|.+.+|+...         ......+.+|.++|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|
T Consensus        26 ~~la~~~~~g~v~iwd~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~   96 (814)
T 3mkq_A           26 PWVLTTLYSGRVEIWNYET---------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH   96 (814)
T ss_dssp             SEEEEEETTSEEEEEETTT---------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEeCCCEEEEEECCC---------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence            3466777889999998543         3466788899999999999999999999999999999999999999999999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC-CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      .+.|++++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+|.++..+++++.||.|++||+.++...
T Consensus        97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~  176 (814)
T 3mkq_A           97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (814)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred             CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence            999999999999999999999999999999987 6778888999999999999966789999999999999999888777


Q ss_pred             eeeeec--CceeEEEEcC--CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          346 NTIIFH--SNCNALAFSM--DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       346 ~~~~~~--~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      ..+..+  ..+.+++|+|  ++.++++|+.||.|++||+.+++.+..+..+. ..|.+++|+|++.++++++.||.|++|
T Consensus       177 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~v~vw  255 (814)
T 3mkq_A          177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM-SNVSFAVFHPTLPIIISGSEDGTLKIW  255 (814)
T ss_dssp             EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS-SCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            776654  5699999999  99999999999999999999999998888776 899999999999999999999999999


Q ss_pred             EcCCceeeeEeecCCCeeecCceeEEEcCCCC--EEEEEcCCCeEEEEeCCCcceeec----------------------
Q 010470          422 DIRSLEVCGSLRATGNRVASNWSRSCISPDES--YVAAGSADGSVYIWSISKADIVRT----------------------  477 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~----------------------  477 (510)
                      |+.+++....+..+...+.    +++|+|+|.  ++++++ ++.+.+|++..+.....                      
T Consensus       256 d~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  330 (814)
T 3mkq_A          256 NSSTYKVEKTLNVGLERSW----CIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT  330 (814)
T ss_dssp             ETTTCSEEEEECCSSSSEE----EEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred             ECCCCcEEEEeecCCCcEE----EEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence            9999998888877765544    489999987  466555 56688888754321111                      


Q ss_pred             ---------------------ccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          478 ---------------------LKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       478 ---------------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                                           +..+...+.+++|+|+|++|++++ ||.+.+|+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~  383 (814)
T 3mkq_A          331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT  383 (814)
T ss_dssp             EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence                                 122444678899999999888887 88888885

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2e-37  Score=285.97  Aligned_cols=245  Identities=22%  Similarity=0.347  Sum_probs=206.2

Q ss_pred             ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC--CCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEE
Q 010470          261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS--GRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVW  337 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iw  337 (510)
                      ..+.+|...|.+++|+|+|++|++|+.|+.|+|||+.+  .+.+..+.+|.++|.+++|+|. ++.+|++|+.||+|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45678999999999999999999999999999999974  3678899999999999999863 47899999999999999


Q ss_pred             ECCCCe--Eeeeeeec-CceeEEEEcCC--CCEEEEecCCCcEEEEECCCCce--eeeecccccccEEEEEEcCC-----
Q 010470          338 DLHKGY--CVNTIIFH-SNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRS-----  405 (510)
Q Consensus       338 d~~~~~--~~~~~~~~-~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~-----  405 (510)
                      |+.++.  .+..+..+ ..|.+++|+|+  |.+|++|+.||.|++||++++..  ...+..|. ..|.+++|+|+     
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA-IGVNSASWAPATIEED  161 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS-SCEEEEEECCCC----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc-CccceEeecCCccccc
Confidence            998774  34444434 56999999997  89999999999999999987632  34455555 78999999997     


Q ss_pred             --------CCEEEEEecCCcEEEEEcCCce----eeeEeecCCCeeecCceeEEEcCCC---CEEEEEcCCCeEEEEeCC
Q 010470          406 --------GNIILTSGRDNLHNLFDIRSLE----VCGSLRATGNRVASNWSRSCISPDE---SYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       406 --------~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~i~iwd~~  470 (510)
                              +++|++++.|+.|++||++++.    ....+.+|...+.    +++|+|++   .+|++|+.||+|+|||+.
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~----~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR----DVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE----EEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE----EEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                    5799999999999999998765    4556666666554    49999985   899999999999999987


Q ss_pred             Ccc---eeecc--cccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          471 KAD---IVRTL--KEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       471 ~~~---~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +..   ....+  ..|...|.+++|+|+|++|++++.||.|++|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            743   11223  46888999999999999999999999999995

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.9e-37  Score=298.96  Aligned_cols=281  Identities=14%  Similarity=0.161  Sum_probs=241.7

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecC----C---CEEEEeeCCCeEEEEeCCCCcc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYN----S---ARLISGGQDKSIKLWDTNTGSL  259 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~---~~l~s~~~dg~i~iwd~~~~~~  259 (510)
                      ..+++++.||.+++|+....   ....+..+...+.+|.++|++++|+|+    |   .+|++++.||.|++||+.++..
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~  103 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLL---DNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE  103 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCC---TTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT
T ss_pred             CeEEEEcCCCEEEEEECCCc---ccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc
Confidence            45678889999999986542   222344577888899999999999999    9   9999999999999999998887


Q ss_pred             -----eeccccc-----ccceeEEEEe----cCCCE-EEEEeCCCeEEEEEcCC------CCeeE-----ee-------c
Q 010470          260 -----SSTLYGC-----LGSVLDLAIT----HDNRS-VIAASSSNNLYVWDVNS------GRVRH-----TL-------T  306 (510)
Q Consensus       260 -----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~iwd~~~------~~~~~-----~~-------~  306 (510)
                           ...+..|     ...|.+++|+    |++.+ |++++.||.|++||+.+      ++.+.     .+       .
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (397)
T 1sq9_A          104 TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM  183 (397)
T ss_dssp             TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSS
T ss_pred             cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeecccc
Confidence                 7888888     5999999999    99999 99999999999999998      66665     66       4


Q ss_pred             CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-------cCceeEEEEcCCCCEEEEecCC---CcEE
Q 010470          307 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-------HSNCNALAFSMDGQTIFSGHID---GNLR  376 (510)
Q Consensus       307 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~d---g~i~  376 (510)
                      .|...|.+++|+| ++ ++++++.||.|++||++++..+..+..       ...+.+++|+|++.+|++++.|   |.|+
T Consensus       184 ~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~  261 (397)
T 1sq9_A          184 TPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT  261 (397)
T ss_dssp             SSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred             CCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence            4889999999999 66 999999999999999999999998887       5679999999999999999999   9999


Q ss_pred             EEECCCCceeeeecc-------------cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee------cC--
Q 010470          377 LWDIQTGKLLSEVAA-------------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR------AT--  435 (510)
Q Consensus       377 i~d~~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~--  435 (510)
                      +||+++++.+..+..             +. ..|.+++|+|++++|++++.||.|++||+++++.+..+.      .+  
T Consensus       262 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  340 (397)
T 1sq9_A          262 LYETEFGERIGSLSVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE  340 (397)
T ss_dssp             EEETTTCCEEEEECBC--------CCBSBS-SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGG
T ss_pred             EEECCCCcccceeccCcccccccccccccC-CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchh
Confidence            999999999988887             55 899999999999999999999999999999999998888      44  


Q ss_pred             ---------CCeeecCceeEEEcCCC----------CEEEEEcCCCeEEEEeCCCcc
Q 010470          436 ---------GNRVASNWSRSCISPDE----------SYVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       436 ---------~~~~~~~~~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~  473 (510)
                               .......+..++|+|+|          ++|++|+.||.|++|++.+|+
T Consensus       341 ~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          341 DILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             GCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             hhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                     00002345569999998          799999999999999998763

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.1e-37  Score=317.21  Aligned_cols=277  Identities=23%  Similarity=0.373  Sum_probs=233.5

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.|+.+++|+....    ......+...+.+|.+.|.+++|+|+|++|++|+.||.|+|||+.++.....+.+|
T Consensus       396 ~~l~s~s~D~~i~~W~~~~~----~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h  471 (694)
T 3dm0_A          396 DIIVSASRDKSIILWKLTKD----DKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH  471 (694)
T ss_dssp             SEEEEEETTSEEEEEECCCS----TTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CEEEEEeCCCcEEEEEccCC----CcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC
Confidence            34778899999999985431    11123356788999999999999999999999999999999999999999999999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee---cCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCC
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL---TGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~  342 (510)
                      ...|.+++|+|++++|++++.|++|++||+.........   .+|...|.+++|+|.. ...+++++.||.|++||++++
T Consensus       472 ~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~  551 (694)
T 3dm0_A          472 TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC  551 (694)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC
Confidence            999999999999999999999999999997654332222   4688999999999943 268999999999999999999


Q ss_pred             eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          343 YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       343 ~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      .+...+..| ..|.+++|+|+|++|++|+.||.|++||+++++.+..+..+  ..+.+++|+|++.++++++ ++.|++|
T Consensus       552 ~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~-~~~i~iw  628 (694)
T 3dm0_A          552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNRYWLCAAT-EHGIKIW  628 (694)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSSSEEEEEE-TTEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCCcEEEEEc-CCCEEEE
Confidence            988888766 45999999999999999999999999999999988777654  6899999999998887765 5669999


Q ss_pred             EcCCceeeeEeecCCCee---------------ecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          422 DIRSLEVCGSLRATGNRV---------------ASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      |+.++..+..+..+....               ...+.+++|+|+|++|++|+.||.|+||++.
T Consensus       629 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          629 DLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            999998887765432210               1124568999999999999999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.9e-38  Score=290.70  Aligned_cols=247  Identities=20%  Similarity=0.271  Sum_probs=200.8

Q ss_pred             eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEec--CCCEEEEEeCCCeEEEE
Q 010470          219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVW  294 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iw  294 (510)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++.  .+..+.+|.+.|.+++|+|  ++++|++++.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3567999999999999999999999999999999998764  4677889999999999986  48999999999999999


Q ss_pred             EcCCCC--eeEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeE---eeeeeec-CceeEEEEcCC-----
Q 010470          295 DVNSGR--VRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYC---VNTIIFH-SNCNALAFSMD-----  362 (510)
Q Consensus       295 d~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-~~i~~i~~~~~-----  362 (510)
                      |+.++.  ....+.+|...|.+++|+|.. +.+|++|+.||.|++||+..+..   ...+..+ ..+.+++|+|+     
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            998874  567788999999999999942 78999999999999999987532   2222233 45889999987     


Q ss_pred             ------------CCEEEEecCCCcEEEEECCCC---ceeeeecccccccEEEEEEcCCC----CEEEEEecCCcEEEEEc
Q 010470          363 ------------GQTIFSGHIDGNLRLWDIQTG---KLLSEVAAHSLAAVTSISLSRSG----NIILTSGRDNLHNLFDI  423 (510)
Q Consensus       363 ------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~i~d~  423 (510)
                                  +.+|++|+.||.|++||++.+   +....+..|. ..|.+++|+|++    .+|++++.|+.|++|++
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~-~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS-DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS-SCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC-CceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                        478999999999999999755   3556666666 899999999986    79999999999999999


Q ss_pred             CCce----eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          424 RSLE----VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       424 ~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      .+..    ....+..+..    .+..++|+|+|++|++++.||.|++|+..
T Consensus       246 ~~~~~~~~~~~~~~~~~~----~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          246 DDASSNTWSPKLLHKFND----VVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             SSTTCCCCBCCEEEECSS----CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCccccchhhhhhhcCCC----cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            7621    1122333333    34569999999999999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-36  Score=290.89  Aligned_cols=272  Identities=20%  Similarity=0.288  Sum_probs=227.1

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccc-cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINA-HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL  267 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  267 (510)
                      ++.++.|+.+++|+...         ......+.. |.+.|++++|+|+|.+|++|+.||.|++||+.+++.+..+.+|.
T Consensus       106 l~~~~~d~~v~lw~~~~---------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  176 (401)
T 4aez_A          106 VVAVALERNVYVWNADS---------GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ  176 (401)
T ss_dssp             EEEEEETTEEEEEETTT---------CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEEECCCeEEEeeCCC---------CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCC
Confidence            45566778888887543         123333333 88999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcC-CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVN-SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      ..|.+++|  ++.++++++.||.|++||+. .+.....+.+|...|.+++|+| ++.+|++++.||.|++||+.++.++.
T Consensus       177 ~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~  253 (401)
T 4aez_A          177 ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKF  253 (401)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEE
T ss_pred             CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccE
Confidence            99999999  46799999999999999998 4667888999999999999999 89999999999999999999998888


Q ss_pred             eeeec-CceeEEEEcCCCC-EEEEec--CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEE--ecCCcEEE
Q 010470          347 TIIFH-SNCNALAFSMDGQ-TIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS--GRDNLHNL  420 (510)
Q Consensus       347 ~~~~~-~~i~~i~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~d~~i~i  420 (510)
                      .+..+ ..+.+++|+|++. ++++|+  .||.|++||+.+++.+..+..+  ..+.+++|+|++.+++++  +.||.|++
T Consensus       254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v  331 (401)
T 4aez_A          254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSI  331 (401)
T ss_dssp             EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEE
T ss_pred             EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEE
Confidence            87655 5699999999765 555654  7999999999999998888654  789999999999999994  48999999


Q ss_pred             EEcCCceeeeE--eecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470          421 FDIRSLEVCGS--LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       421 ~d~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  478 (510)
                      ||+.++.....  +..+...+    ..++|+|+|.+|++++.||.|++|++.+++.+...
T Consensus       332 ~~~~~~~~~~~~~~~~h~~~v----~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          332 WSYSSSGLTKQVDIPAHDTRV----LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEETTEEEEEEEEECCSSCC----CEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             EecCCccceeEEEecCCCCCE----EEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            99998665544  44554444    45999999999999999999999999998876654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.5e-37  Score=286.98  Aligned_cols=244  Identities=23%  Similarity=0.314  Sum_probs=200.1

Q ss_pred             cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC--eeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEE
Q 010470          262 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       262 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd  338 (510)
                      .+.+|.+.|++++|+|+|++|++|+.|++|++||+.++.  .+..+.+|.+.|.+++|+|. ++.+|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            356899999999999999999999999999999998875  46788999999999999763 478999999999999999


Q ss_pred             CCCCe--Eeeeeeec-CceeEEEEcCC--CCEEEEecCCCcEEEEECCCCce---eeeecccccccEEEEEEcCC-----
Q 010470          339 LHKGY--CVNTIIFH-SNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTGKL---LSEVAAHSLAAVTSISLSRS-----  405 (510)
Q Consensus       339 ~~~~~--~~~~~~~~-~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~i~~~~~-----  405 (510)
                      ++++.  ....+..+ ..|.+++|+|+  +.+|++|+.||.|++||++.+..   ...+..|. ..+.++.|+|+     
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT-IGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS-SCBCCCEECCCCCC--
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc-CCcceEEEccccCCcc
Confidence            98874  44455444 56999999997  78999999999999999987632   23334444 78999999997     


Q ss_pred             ------------CCEEEEEecCCcEEEEEcCCc---eeeeEeecCCCeeecCceeEEEcCCC----CEEEEEcCCCeEEE
Q 010470          406 ------------GNIILTSGRDNLHNLFDIRSL---EVCGSLRATGNRVASNWSRSCISPDE----SYVAAGSADGSVYI  466 (510)
Q Consensus       406 ------------~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~dg~i~i  466 (510)
                                  +.+|++++.|+.|++||++..   .....+..|...+.    +++|+|++    .+|++|+.||+|++
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~----~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVR----DVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEE----EEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceE----EEEecCCCCCCCceEEEEcCCCeEEE
Confidence                        478999999999999999754   45556666665544    49999987    89999999999999


Q ss_pred             EeCCCcc----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          467 WSISKAD----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       467 wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |++.+..    ....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus       243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             EEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            9987631    2234566889999999999999999999999999995

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.6e-37  Score=295.60  Aligned_cols=279  Identities=19%  Similarity=0.246  Sum_probs=231.6

Q ss_pred             ceEEEEEecCCCEE-EEeeCCCeEEEEeCCCC----cceecccccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCCC-
Q 010470          227 GCASILFEYNSARL-ISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNSG-  299 (510)
Q Consensus       227 ~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-  299 (510)
                      ....++++|+...+ ++++.||.|+||++...    .....+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            45568888876544 45788999999999654    23456779999999999999 9999999999999999999987 


Q ss_pred             ------CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee--ee-cCceeEEEEcCCCCEEEEec
Q 010470          300 ------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI--IF-HSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       300 ------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~-~~~i~~i~~~~~~~~l~~~~  370 (510)
                            +++..+.+|...|.+++|+|.+.++|++++.||.|++||+.++..+..+  .. ...+.+++|+|++.+|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  6678899999999999999944479999999999999999999998888  43 35699999999999999999


Q ss_pred             CCCcEEEEECCCCceeeee-cccccccEEEEEEcCCCCEEEEE---ecCCcEEEEEcCCcee-eeEeecCCCeeecCcee
Q 010470          371 IDGNLRLWDIQTGKLLSEV-AAHSLAAVTSISLSRSGNIILTS---GRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSR  445 (510)
Q Consensus       371 ~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~---~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~  445 (510)
                      .||.|++||+++++.+..+ ..+....+.++.|+|++.+|+++   +.|+.|++||++++.. .......   ....+..
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~v~~  272 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD---TSSGVLL  272 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC---CCSSCEE
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc---CCCceeE
Confidence            9999999999999999888 56653458999999999999999   7899999999998654 2222211   1123455


Q ss_pred             EEEcCCCCEEE-EEcCCCeEEEEeCCCcce-eecccc--cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          446 SCISPDESYVA-AGSADGSVYIWSISKADI-VRTLKE--HTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       446 ~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++|+|++++|+ +|+.||.|++||+.+++. +..+..  |..+|.+++|+|++.++++  .++.+++|+
T Consensus       273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence            89999999986 566799999999998874 444444  5589999999999988765  466889885

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-36  Score=289.48  Aligned_cols=253  Identities=18%  Similarity=0.262  Sum_probs=213.0

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCC--CCcceecccccccceeEEEEecC--CCEEEEEeCCCeEE
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN--TGSLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLY  292 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~  292 (510)
                      +...+.+|.+.|++++|+|++++|++|+.||.|+|||+.  ++..+..+.+|...|++++|+|+  +.+|++++.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            456788999999999999999999999999999999997  56677788899999999999987  99999999999999


Q ss_pred             EEEcCCCC--eeEeecCCCCceEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEee--eee-ecCceeEEEEcC----
Q 010470          293 VWDVNSGR--VRHTLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKGYCVN--TII-FHSNCNALAFSM----  361 (510)
Q Consensus       293 iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--~~~-~~~~i~~i~~~~----  361 (510)
                      +||+.+++  ....+..|...|.+++|+| +  +.++++++.||.|++||+.++....  .+. ....+.+++|+|    
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            99999987  7778888999999999999 5  8899999999999999998874322  232 335699999999    


Q ss_pred             ---------CCCEEEEecCCCcEEEEECCCCc----eeeeecccccccEEEEEEcCC---CCEEEEEecCCcEEEEEcCC
Q 010470          362 ---------DGQTIFSGHIDGNLRLWDIQTGK----LLSEVAAHSLAAVTSISLSRS---GNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       362 ---------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~i~d~~~  425 (510)
                               ++.+|++|+.||.|++||++++.    ....+..|. ..|.+++|+|+   +.+|++++.||.|++||+++
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc-CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                     69999999999999999998765    334555555 89999999999   89999999999999999997


Q ss_pred             ceeeeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          426 LEVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       426 ~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      +...... ..........+..++|+|+|++|++++.||.|++|++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            6421111 111122233456699999999999999999999999873

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2e-35  Score=278.46  Aligned_cols=280  Identities=21%  Similarity=0.333  Sum_probs=237.1

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.|+.+++|+....    ......+...+.+|.+.|.+++|+|+|++|++|+.|+.|++|+............+
T Consensus        52 ~~l~S~s~D~~i~vWd~~~~----~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~  127 (340)
T 4aow_A           52 DMILSASRDKTIIMWKLTRD----ETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH  127 (340)
T ss_dssp             TEEEEEETTSCEEEEEECCS----SSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CEEEEEcCCCeEEEEECCCC----CcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCC
Confidence            45788999999999985431    11223466788999999999999999999999999999999999999888888888


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe-eEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeE
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYC  344 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~  344 (510)
                      ...+..+.+++++.+|++++.|+.+++||+..... .....+|...+.++.|++.. ..++++++.|+.|++||+.++..
T Consensus       128 ~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~  207 (340)
T 4aow_A          128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL  207 (340)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred             CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence            99999999999999999999999999999876543 44557899999999998843 35678999999999999999999


Q ss_pred             eeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          345 VNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       345 ~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      +..+..+ ..|++++|+|++++|++|+.||.|++||+++++.+..+..+  ..+.++.|+|++.+ ++++.|+.|++||+
T Consensus       208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~-~~~~~d~~i~iwd~  284 (340)
T 4aow_A          208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYW-LCAATGPSIKIWDL  284 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSE-EEEEETTEEEEEET
T ss_pred             eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCce-eeccCCCEEEEEEC
Confidence            8888766 45999999999999999999999999999999998888766  68999999998765 45667999999999


Q ss_pred             CCceeeeEeecCC-----CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470          424 RSLEVCGSLRATG-----NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       424 ~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  473 (510)
                      +++..+..+....     ......+.+++|+|+|++|++|+.||.|+|||+.+|+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          285 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            9888776665322     1223356679999999999999999999999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-35  Score=282.02  Aligned_cols=274  Identities=17%  Similarity=0.219  Sum_probs=241.4

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL  267 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  267 (510)
                      .+++++.||.+++|+...         ......+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +.
T Consensus        46 ~l~~~~~dg~i~vwd~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~  115 (369)
T 3zwl_B           46 LLFSCSKDSSASVWYSLN---------GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SP  115 (369)
T ss_dssp             EEEEEESSSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CS
T ss_pred             EEEEEeCCCEEEEEeCCC---------chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cC
Confidence            466778889999997443         34677889999999999999999999999999999999999999888777 88


Q ss_pred             cceeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCC-----------eeEeecCCCC--ceEEEEEecCCCCEEEEEe
Q 010470          268 GSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGR-----------VRHTLTGHTD--KVCAVDVSKISSRHVVSAA  329 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~-----------~~~~~~~~~~--~v~~i~~~~~~~~~l~s~~  329 (510)
                      ..|.+++|+|++.++++++.+     |.|.+||+..+.           ....+..|..  .+.+++|+| ++.++++++
T Consensus       116 ~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  194 (369)
T 3zwl_B          116 VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGH  194 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEE
T ss_pred             CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEc
Confidence            999999999999999999998     999999997654           3444555666  899999999 888999999


Q ss_pred             CCCcEEEEECCC-CeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCC
Q 010470          330 YDRTLKVWDLHK-GYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGN  407 (510)
Q Consensus       330 ~dg~i~iwd~~~-~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~  407 (510)
                      .||.|++||+.+ +..+..+..+ ..+.+++|+|++.+|++++.||.|++||+++++.+..+...  ..+.++.|+|++.
T Consensus       195 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~  272 (369)
T 3zwl_B          195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD--CPLNTAVITPLKE  272 (369)
T ss_dssp             TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SCEEEEEECSSSS
T ss_pred             CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC--CCceeEEecCCCc
Confidence            999999999998 7777777755 56999999999999999999999999999999988888743  7899999999999


Q ss_pred             EEEEEecCC--------------cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470          408 IILTSGRDN--------------LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       408 ~l~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  473 (510)
                      ++++++.++              .+++||+.+++....+..+...+..    ++|+|++++|++++.||.|++|++.++.
T Consensus       273 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~----~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          273 FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT----VAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE----EEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE----EEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            999999888              8999999999999998887766554    9999999999999999999999998876


Q ss_pred             eeecc
Q 010470          474 IVRTL  478 (510)
Q Consensus       474 ~~~~~  478 (510)
                      ....+
T Consensus       349 ~~~~~  353 (369)
T 3zwl_B          349 FDFKY  353 (369)
T ss_dssp             HTCCC
T ss_pred             chhHH
Confidence            54443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.3e-35  Score=285.18  Aligned_cols=282  Identities=22%  Similarity=0.308  Sum_probs=226.9

Q ss_pred             cCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeE
Q 010470          193 QVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLD  272 (510)
Q Consensus       193 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  272 (510)
                      ..|+.|++|+.....       ......+.+|.+.|++|+|+|+|++|++|+.||.|+|||+.+++.+..+.+|...+.+
T Consensus       122 gld~tV~lWd~~tg~-------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~  194 (420)
T 4gga_A          122 ALDNSVYLWSASSGD-------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS  194 (420)
T ss_dssp             EETTEEEEEETTTCC-------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EeCCEEEEEECCCCC-------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence            347888888754310       1122345678889999999999999999999999999999999999999999999998


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCC-CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE----eee
Q 010470          273 LAITHDNRSVIAASSSNNLYVWDVNSG-RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC----VNT  347 (510)
Q Consensus       273 ~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~  347 (510)
                      +.|+  +.++++|+.|+.+++||.... ..+..+.+|...+..+.++| ++.++++++.||.+++||..++..    +..
T Consensus       195 ~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~  271 (420)
T 4gga_A          195 LSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQT  271 (420)
T ss_dssp             EEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred             EeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeee
Confidence            8774  679999999999999998764 46678899999999999999 889999999999999999987653    223


Q ss_pred             ee-ecCceeEEEEcCCCC-EEEE--ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe--cCCcEEEE
Q 010470          348 II-FHSNCNALAFSMDGQ-TIFS--GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG--RDNLHNLF  421 (510)
Q Consensus       348 ~~-~~~~i~~i~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~i~  421 (510)
                      .. ....|.+++|+|++. .+++  |+.|+.|++||+.++.....+..+  ..+.++.|+|+++.+++++  .|+.|+||
T Consensus       272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv~~sg~~d~~I~iw  349 (420)
T 4gga_A          272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLVIW  349 (420)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS--SCEEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred             ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc--cceeeeeecCCCCeEEEEEecCCCEEEEE
Confidence            33 335699999999655 4444  568999999999999999888776  6899999999999988765  68999999


Q ss_pred             EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEE
Q 010470          422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW  490 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  490 (510)
                      |+.+++.+..+.+|...+..    ++|+|+|.+|++|+.||+|+|||+....+......+...+....+
T Consensus       350 d~~~~~~v~~l~gH~~~V~~----l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~  414 (420)
T 4gga_A          350 KYPTMAKVAELKGHTSRVLS----LTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL  414 (420)
T ss_dssp             ETTTCCEEEEECCCSSCEEE----EEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred             ECCCCcEEEEEcCCCCCEEE----EEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence            99999999999988776654    999999999999999999999999887776666555554444444

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-35  Score=284.73  Aligned_cols=270  Identities=14%  Similarity=0.177  Sum_probs=222.0

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcceeccc-
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLY-  264 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  264 (510)
                      ..+++++.||.+++|+....       .......+.+|.+.|.+++|+| ++.+|++++.||.|++||+.+ .....+. 
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~  158 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQ-------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAK  158 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTST-------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEeCCCc-------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEec
Confidence            45778888999999986531       1112333457999999999999 789999999999999999985 4444443 


Q ss_pred             --ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC-EEEEEeCCCcEEEEECCC
Q 010470          265 --GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR-HVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       265 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~s~~~dg~i~iwd~~~  341 (510)
                        .|...|.+++|+|++.+|++++.|+.|++||+ +++.+..+.+|...|.+++|+| ++. ++++++.|+.|++||+++
T Consensus       159 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          159 TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGG
T ss_pred             cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCC
Confidence              34588999999999999999999999999998 5788899999999999999999 555 999999999999999987


Q ss_pred             ----CeEeeeeeecCceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeecccc----------------cccEEEE
Q 010470          342 ----GYCVNTIIFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS----------------LAAVTSI  400 (510)
Q Consensus       342 ----~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------~~~i~~i  400 (510)
                          +.++..+.....+.+++|+| ++.+|++++.||.|++||+++++....+..+.                ...+..+
T Consensus       237 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  316 (383)
T 3ei3_B          237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA  316 (383)
T ss_dssp             CCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEE
T ss_pred             CCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEE
Confidence                66777776667899999999 99999999999999999999887766655332                1345556


Q ss_pred             EEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          401 SLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       401 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      .|+|++.+  +++.|+.|++||+.+++.+..+..+..  ...+..++|+|+|++|++|+ ||.|++||+.+
T Consensus       317 ~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~--~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          317 GRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA--AGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB--CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC--CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            77777776  778999999999999999888876431  12234469999999999997 99999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=284.32  Aligned_cols=249  Identities=22%  Similarity=0.354  Sum_probs=209.8

Q ss_pred             CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC--CCCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCc
Q 010470          257 GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN--SGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRT  333 (510)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~  333 (510)
                      |+++..+.+|.+.|++++|+|++++|++++.||.|++||+.  +++....+.+|...|.+++|+|. ++.+|++++.||.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            34567788999999999999999999999999999999998  55677889999999999999872 2899999999999


Q ss_pred             EEEEECCCCe--Eeeeeeec-CceeEEEEcCC--CCEEEEecCCCcEEEEECCCCce--eeeecccccccEEEEEEcC--
Q 010470          334 LKVWDLHKGY--CVNTIIFH-SNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSR--  404 (510)
Q Consensus       334 i~iwd~~~~~--~~~~~~~~-~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~--  404 (510)
                      |++||+.++.  .+..+..+ ..+.+++|+|+  +.+|++++.||.|++||++++..  ...+..+. ..|.+++|+|  
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~  159 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA-IGVNSASWAPAT  159 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT-TCEEEEEECCCC
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC-CceEEEEEcCcc
Confidence            9999999987  55555544 56999999999  99999999999999999988743  33444554 8999999999  


Q ss_pred             -----------CCCEEEEEecCCcEEEEEcCCce----eeeEeecCCCeeecCceeEEEcCC---CCEEEEEcCCCeEEE
Q 010470          405 -----------SGNIILTSGRDNLHNLFDIRSLE----VCGSLRATGNRVASNWSRSCISPD---ESYVAAGSADGSVYI  466 (510)
Q Consensus       405 -----------~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~i~i  466 (510)
                                 ++.+|++++.|+.|++||++++.    ....+..+...+    .+++|+|+   +.+|++++.||.|++
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v----~~~~~sp~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV----RDVAWSPTVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE----EEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE----eEEEECCCCCCCCeEEEEeCCCEEEE
Confidence                       69999999999999999998754    334455555444    45999999   899999999999999


Q ss_pred             EeCCCcc-----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          467 WSISKAD-----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       467 wd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ||+.++.     .+.....|...|.+++|+|+|++|++++.||.|++|+
T Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             EeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            9998864     2333345889999999999999999999999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7e-36  Score=283.56  Aligned_cols=272  Identities=14%  Similarity=0.179  Sum_probs=224.1

Q ss_pred             hhhhcC---CceEEecccccccccccCCCccceeeccccccceEEEEEecC---CCEEEEeeCCCeEEEEeCCCCc-cee
Q 010470          189 LAKQQV---DGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYN---SARLISGGQDKSIKLWDTNTGS-LSS  261 (510)
Q Consensus       189 ~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~~~~~-~~~  261 (510)
                      ++.++.   |+.+++|+.....        .......+|.++|.+++|+|+   |.+|++|+.||.|++||+.++. .+.
T Consensus        34 ~~~~s~~~~d~~v~iw~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  105 (357)
T 3i2n_A           34 VTMGNFARGTGVIQLYEIQHGD--------LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY  105 (357)
T ss_dssp             EEEEC--CCCEEEEEEEECSSS--------EEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE
T ss_pred             EEecCccCCCcEEEEEeCCCCc--------ccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE
Confidence            344554   8899999854311        111223379999999999998   6999999999999999999888 788


Q ss_pred             cccccccceeEEEE------ecCCCEEEEEeCCCeEEEEEcCCCC-eeEeecCCCC----ceEEEE----EecCCCCEEE
Q 010470          262 TLYGCLGSVLDLAI------THDNRSVIAASSSNNLYVWDVNSGR-VRHTLTGHTD----KVCAVD----VSKISSRHVV  326 (510)
Q Consensus       262 ~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~----~v~~i~----~~~~~~~~l~  326 (510)
                      .+.+|...|.++.|      +|++++|++++.||.|++||+.++. ....+..|.+    .+.++.    |+| ++.+++
T Consensus       106 ~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~  184 (357)
T 3i2n_A          106 SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVC  184 (357)
T ss_dssp             EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEE
T ss_pred             EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEE
Confidence            88999999999955      6899999999999999999999887 7777766554    789998    566 889999


Q ss_pred             EEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcC---CCCEEEEecCCCcEEEEECCCCceeeeec-----ccccccEE
Q 010470          327 SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM---DGQTIFSGHIDGNLRLWDIQTGKLLSEVA-----AHSLAAVT  398 (510)
Q Consensus       327 s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~  398 (510)
                      +++.||.|++||++++...........+.+++|+|   ++.++++|+.||.|++||+++++....+.     .+. ..|.
T Consensus       185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~v~  263 (357)
T 3i2n_A          185 AGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK-STVW  263 (357)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS-SCEE
T ss_pred             EEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc-CCEE
Confidence            99999999999999999877777778899999999   99999999999999999998877665554     554 8999


Q ss_pred             EEEEcCCCC-EEEEEecCCcEEEEEcCCc-------------------eeeeEeecCCCeeecCceeEEEcCCCCEEE-E
Q 010470          399 SISLSRSGN-IILTSGRDNLHNLFDIRSL-------------------EVCGSLRATGNRVASNWSRSCISPDESYVA-A  457 (510)
Q Consensus       399 ~i~~~~~~~-~l~~~~~d~~i~i~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~  457 (510)
                      +++|+|++. +|++++.||.|++||++.+                   ..+..+..+...+    ..++|+|+|++|+ +
T Consensus       264 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~s  339 (357)
T 3i2n_A          264 QVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI----SSLDWSPDKRGLCVC  339 (357)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE----EEEEECSSSTTEEEE
T ss_pred             EEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe----eEEEEcCCCCeEEEE
Confidence            999999998 8999999999999999854                   3445555555444    4599999999998 7


Q ss_pred             EcCCCeEEEEeCCCcce
Q 010470          458 GSADGSVYIWSISKADI  474 (510)
Q Consensus       458 ~~~dg~i~iwd~~~~~~  474 (510)
                      ++.||.|++||+.+.+.
T Consensus       340 ~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          340 SSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EETTSEEEEEEECC---
T ss_pred             ecCCCcEEEEECCCccc
Confidence            99999999999987653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.1e-36  Score=286.99  Aligned_cols=267  Identities=15%  Similarity=0.242  Sum_probs=222.7

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeecc-----ccccceEEEEEecC----CCEEEEeeCCCeEEEEeCCCCcc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKIN-----AHEGGCASILFEYN----SARLISGGQDKSIKLWDTNTGSL  259 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~~~~  259 (510)
                      ++.+..++.+++|+....         .....+.     .|.+.|++++|+|+    |.+|++|+.||.|++||+.+++.
T Consensus        37 ~~~~~~~~~v~vw~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  107 (366)
T 3k26_A           37 VFATVGSNRVTLYECHSQ---------GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC  107 (366)
T ss_dssp             EEEEEETTEEEEEEECGG---------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE
T ss_pred             EEEECCCCEEEEEEcCCC---------cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE
Confidence            344455668888885431         1222222     36788999999999    67999999999999999999999


Q ss_pred             eecccccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCCCCeeEee---cCCCCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470          260 SSTLYGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNSGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYDRTLK  335 (510)
Q Consensus       260 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~  335 (510)
                      +..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++....+   .+|...|.+++|+| ++.+|++++.||.|+
T Consensus       108 ~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  186 (366)
T 3k26_A          108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLK  186 (366)
T ss_dssp             EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEE
Confidence            999999999999999999 9999999999999999999999988888   78999999999999 889999999999999


Q ss_pred             EEECCCCeEeeeee-----------------------------ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCce-
Q 010470          336 VWDLHKGYCVNTII-----------------------------FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL-  385 (510)
Q Consensus       336 iwd~~~~~~~~~~~-----------------------------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-  385 (510)
                      +||++++.....+.                             ....+.+++|+  +.++++++.||.|++||++++.. 
T Consensus       187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~  264 (366)
T 3k26_A          187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDD  264 (366)
T ss_dssp             EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCC
T ss_pred             EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccc
Confidence            99998776544332                             34568999998  78999999999999999987654 


Q ss_pred             -------------eeeecccccccEEEEEEcCC--CCEEEEEecCCcEEEEEcCCceee----eEeecCCCeeecCceeE
Q 010470          386 -------------LSEVAAHSLAAVTSISLSRS--GNIILTSGRDNLHNLFDIRSLEVC----GSLRATGNRVASNWSRS  446 (510)
Q Consensus       386 -------------~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~  446 (510)
                                   +..+..+. ..|.+++|+|+  +.+|++++.||.|++||+.+++..    ..+..+.  ....+..+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~  341 (366)
T 3k26_A          265 IDKIKPSESNVTILGRFDYSQ-CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK--CGAAIRQT  341 (366)
T ss_dssp             GGGCCTTCCCEEEEEEEECSS-CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT--CCSCEEEE
T ss_pred             ccccccCCcchheeccccccC-CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc--cCCceEEE
Confidence                         55566665 78999999999  999999999999999999987543    3454441  12344559


Q ss_pred             EEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          447 CISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       447 ~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      +|+|++++|++++.||.|++||+.
T Consensus       342 ~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          342 SFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EeCCCCCeEEEEeCCCEEEEEEec
Confidence            999999999999999999999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-35  Score=271.39  Aligned_cols=269  Identities=23%  Similarity=0.302  Sum_probs=233.1

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC---cceecc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG---SLSSTL  263 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~  263 (510)
                      ..+++++.||.+++|+...         ......+.+|.+.|.+++|+|++.+|++|+.||.|++|++...   +....+
T Consensus        30 ~~l~s~~~dg~v~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  100 (313)
T 3odt_A           30 SKVASVSRDGTVRLWSKDD---------QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL  100 (313)
T ss_dssp             TEEEEEETTSEEEEEEESS---------SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred             CEEEEEEcCCcEEEEECCC---------CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch
Confidence            3467888999999998543         3456778899999999999999999999999999999998654   556778


Q ss_pred             cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY  343 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~  343 (510)
                      .+|...|.++.|  +++++++++.||.|++||  .+.....+..|...+.++.|+|.++..+++++.||.|++||  .+.
T Consensus       101 ~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~  174 (313)
T 3odt_A          101 IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDK  174 (313)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTE
T ss_pred             hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCc
Confidence            899999999999  578999999999999999  67788889999999999999987889999999999999999  455


Q ss_pred             Eeeeeee--cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          344 CVNTIIF--HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       344 ~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      ....+..  ...+.+++|+|++. +++++.||.|++||+++++.+..+..+. ..|.+++|+|++ .|++++.||.|++|
T Consensus       175 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~-~l~~~~~dg~v~iw  251 (313)
T 3odt_A          175 VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE-SFVYCIKLLPNG-DIVSCGEDRTVRIW  251 (313)
T ss_dssp             EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTTS-CEEEEETTSEEEEE
T ss_pred             eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC-ceEEEEEEecCC-CEEEEecCCEEEEE
Confidence            5555553  45699999999998 8899999999999999999999998776 899999999999 68999999999999


Q ss_pred             EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470          422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  478 (510)
                      |+.+++....+..+...+.    .++|+|++. +++++.||.|++||+.+++.....
T Consensus       252 d~~~~~~~~~~~~~~~~i~----~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          252 SKENGSLKQVITLPAISIW----SVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             CTTTCCEEEEEECSSSCEE----EEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             ECCCCceeEEEeccCceEE----EEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence            9999999998887766554    499999998 556888999999999988766544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.5e-35  Score=276.62  Aligned_cols=277  Identities=13%  Similarity=0.134  Sum_probs=215.2

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEE-EEEeCCCeEEEEE
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV-IAASSSNNLYVWD  295 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd  295 (510)
                      +...+.+|.+.|++++|+|||++|++|+.+| ++||++.++.......  ...+..+.+.++++.+ ++++.|+.|++||
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWD   87 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence            4456688999999999999999999998775 7899998876654432  2357888999998887 4567789999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeecCceeEEEEcCCCCEEEE--ecCC
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFS--GHID  372 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~--~~~d  372 (510)
                      +.+++.+..+. +...|.++.+++   ..++++. ++.|++||+.++ +.+..+..  ....+++++  .++++  |+.+
T Consensus        88 ~~~~~~~~~~~-~~~~v~~v~~~~---~~~~~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~  158 (355)
T 3vu4_A           88 DVKKQDVSRIK-VDAPVKDLFLSR---EFIVVSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL  158 (355)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECS---SEEEEEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred             CCCCcEEEEEE-CCCceEEEEEcC---CEEEEEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence            99999988887 677999999976   3444444 889999999988 66666655  444566666  55655  6899


Q ss_pred             CcEEEEECCCCc---------------e-eeeecccccccEEEEEEcCCCCEEEEEecCCc-EEEEEcCCceeeeEee-c
Q 010470          373 GNLRLWDIQTGK---------------L-LSEVAAHSLAAVTSISLSRSGNIILTSGRDNL-HNLFDIRSLEVCGSLR-A  434 (510)
Q Consensus       373 g~i~i~d~~~~~---------------~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~-~  434 (510)
                      |.|++||+.++.               + +..+..|. ..|.+++|+|+|.+|++++.|++ |++||+++++.+..+. +
T Consensus       159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~-~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT-NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             TCEEEEECCC------------------CCEEECCCS-SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             cEEEEEECCCCCccccccccccccccCcccEEEEccC-CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            999999998765               2 56677776 89999999999999999999998 9999999999998887 3


Q ss_pred             -CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee--eccc---------------------ccCcCEEEEEE
Q 010470          435 -TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV--RTLK---------------------EHTAPVLSCSW  490 (510)
Q Consensus       435 -~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~---------------------~~~~~v~~~~~  490 (510)
                       +...+    .+++|+|+|++|++++.||+|++||+..+...  ..+.                     .+..+...++|
T Consensus       238 ~h~~~v----~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (355)
T 3vu4_A          238 LDRADV----VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW  313 (355)
T ss_dssp             TCCSCE----EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred             CCCCcE----EEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence             55444    45999999999999999999999999765311  1110                     11223467899


Q ss_pred             eCCCCcEEEeeCCCeEEEcC
Q 010470          491 SGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       491 ~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|+|+.|++++.||.+++|+
T Consensus       314 ~~d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          314 ISESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             SSSSEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEeCCCeEEEEE
Confidence            99999999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-35  Score=286.66  Aligned_cols=281  Identities=15%  Similarity=0.121  Sum_probs=229.7

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc---ceeccc-------------------------------------
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS---LSSTLY-------------------------------------  264 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~-------------------------------------  264 (510)
                      ..++.+++|+|+|++|+++ .++.|++||+.+|+   .+..+.                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999966665 47899999998888   444433                                     


Q ss_pred             -----------------ccccceeEEEEecCCCEE-EEEeCCCeEEEEEcC--CCCeeEeec--CCCCceEEEEEecCCC
Q 010470          265 -----------------GCLGSVLDLAITHDNRSV-IAASSSNNLYVWDVN--SGRVRHTLT--GHTDKVCAVDVSKISS  322 (510)
Q Consensus       265 -----------------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~  322 (510)
                                       +|.+.|.+++|+|++++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|+| ++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~  161 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DD  161 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CC
Confidence                             234479999999999996 888899999999999  888888876  5678999999999 88


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEee----eeeec-CceeEEEEcCC---CCEEEEecCCCcEEEEECCCCceeeeeccccc
Q 010470          323 RHVVSAAYDRTLKVWDLHKGYCVN----TIIFH-SNCNALAFSMD---GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL  394 (510)
Q Consensus       323 ~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~-~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  394 (510)
                      .+|++++.+|.|++|++.++....    .+..+ ..+.+++|+|+   +.+|++|+.|+.|++||+++++.+..+...+.
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~  241 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK  241 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence            999999999999999998876543    44444 56999999999   99999999999999999999988887553344


Q ss_pred             ccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC---------------------CeeecCceeEEEcCCCC
Q 010470          395 AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG---------------------NRVASNWSRSCISPDES  453 (510)
Q Consensus       395 ~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~s~~~~  453 (510)
                      ..|.+++|+ ++.+|++++.|+.|++||+.+++.+..+..+.                     ......+..++|+|+++
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  320 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP  320 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred             CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence            899999999 99999999999999999999998887775321                     01223456789999999


Q ss_pred             EEEEEc-CCCeEEEEeC--CCc---ceeecccccCcCEEEEEEeCCCCcEEEeeC------CCeEEEc
Q 010470          454 YVAAGS-ADGSVYIWSI--SKA---DIVRTLKEHTAPVLSCSWSGLGKPLASADK------NGVVCVW  509 (510)
Q Consensus       454 ~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~iw  509 (510)
                      +|++++ .++.|++|++  .++   ..+..+..| +.|.+++|+|++.++++++.      +..|.+|
T Consensus       321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred             EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence            999998 8999999999  555   667777777 88999999996533333332      4456776

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-36  Score=296.77  Aligned_cols=269  Identities=12%  Similarity=0.074  Sum_probs=205.8

Q ss_pred             CccceeeccccccceEEEEEecCC---------CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEE
Q 010470          214 PSTCKHKINAHEGGCASILFEYNS---------ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIA  284 (510)
Q Consensus       214 ~~~~~~~~~~h~~~v~~~~~s~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  284 (510)
                      +..+...+. +.+.|.+|+|+|++         ++||+|+.++..                       -..+|++..+++
T Consensus       123 ~~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS  178 (524)
T 2j04_B          123 GKRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDK  178 (524)
T ss_dssp             CCSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------
T ss_pred             CCcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------Cccchhhhhhcc
Confidence            344444554 67899999999987         799999876420                       013689999999


Q ss_pred             EeCCCeEEEEEcCCCCee----EeecCCCCceEEEEEecC-----CCCEEEEEeCCCcEEEEECCCCeEe----------
Q 010470          285 ASSSNNLYVWDVNSGRVR----HTLTGHTDKVCAVDVSKI-----SSRHVVSAAYDRTLKVWDLHKGYCV----------  345 (510)
Q Consensus       285 ~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~i~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~----------  345 (510)
                      ++.|++|+||++.+++..    ..+..|.+.|.+++|+|.     ++.+|++++.||+|++||+.++...          
T Consensus       179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p  258 (524)
T 2j04_B          179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP  258 (524)
T ss_dssp             ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred             CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence            999999999999887642    346678899999999994     2579999999999999999876421          


Q ss_pred             -eeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeecccccccEEEE--EEcCCC-CEEEEEecCCcEE
Q 010470          346 -NTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-LLSEVAAHSLAAVTSI--SLSRSG-NIILTSGRDNLHN  419 (510)
Q Consensus       346 -~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~i--~~~~~~-~~l~~~~~d~~i~  419 (510)
                       ..+..+ ..+.+++|+|++ .|++|+.||+|++||++++. +...+..|. ..|.++  .|+|+| .+|++++.|++|+
T Consensus       259 ~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~-~~V~sv~~~~s~~g~~~laS~S~D~tvk  336 (524)
T 2j04_B          259 SLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHD-SYILSVSTAYSDFEDTVVSTVAVDGYFY  336 (524)
T ss_dssp             SEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSS-SCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred             eEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeeccc-ccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence             233333 469999999864 89999999999999998764 444566666 899999  578888 8999999999999


Q ss_pred             EEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEE
Q 010470          420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS  499 (510)
Q Consensus       420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  499 (510)
                      |||+++++....+..+...  ..+.+++|+|++..+++++.|++|++||+.++..+..+.+|.+.|++++|+|+|++|++
T Consensus       337 lWD~~~~~~~~~~~~~~~~--~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S  414 (524)
T 2j04_B          337 IFNPKDIATTKTTVSRFRG--SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA  414 (524)
T ss_dssp             EECGGGHHHHCEEEEECSC--CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred             EEECCCCCccccccccccc--CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE
Confidence            9999988776666554321  11345899999999999999999999999999988888899999999999999999999


Q ss_pred             eeCCCeEEEcC
Q 010470          500 ADKNGVVCVWT  510 (510)
Q Consensus       500 ~~~dg~i~iwd  510 (510)
                      |+.||+|++||
T Consensus       415 gs~Dgtv~lwd  425 (524)
T 2j04_B          415 GSADGSLIITN  425 (524)
T ss_dssp             EETTTEEECCB
T ss_pred             EECCCEEEEEe
Confidence            99999999996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-36  Score=310.48  Aligned_cols=252  Identities=18%  Similarity=0.257  Sum_probs=209.6

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCC--CCcceecccccccceeEEEEecC--CCEEEEEeCCCeEEE
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN--TGSLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLYV  293 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i  293 (510)
                      ...+.+|.++|++++|+|+|++|++|+.||.|+|||+.  ++.....+.+|.++|++++|+|+  +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            34678999999999999999999999999999999997  55677888999999999999988  999999999999999


Q ss_pred             EEcCCCC--eeEeecCCCCceEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEe--eeee-ecCceeEEEEcC-----
Q 010470          294 WDVNSGR--VRHTLTGHTDKVCAVDVSKIS--SRHVVSAAYDRTLKVWDLHKGYCV--NTII-FHSNCNALAFSM-----  361 (510)
Q Consensus       294 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~--~~~~-~~~~i~~i~~~~-----  361 (510)
                      ||+.+++  ....+.+|...|.+++|+| +  +..+++|+.||.|++||+.++...  ..+. ....+.+++|+|     
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            9999887  7778889999999999999 6  899999999999999999877332  2222 345699999999     


Q ss_pred             --------CCCEEEEecCCCcEEEEECCCC----ceeeeecccccccEEEEEEcCC---CCEEEEEecCCcEEEEEcCCc
Q 010470          362 --------DGQTIFSGHIDGNLRLWDIQTG----KLLSEVAAHSLAAVTSISLSRS---GNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       362 --------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~i~d~~~~  426 (510)
                              ++..+++|+.||.|++||++++    .....+..|. ..|.+++|+|+   +.++++++.||.|++||++++
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC-CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                    5899999999999999999877    4445566665 89999999999   899999999999999999876


Q ss_pred             eeeeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          427 EVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       427 ~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      ...... ..........+.+++|+|+|.+|++|+.||.|++|++..
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            421111 111122233455699999999999999999999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1e-35  Score=290.04  Aligned_cols=277  Identities=17%  Similarity=0.205  Sum_probs=215.9

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcceecc--
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTL--  263 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~--  263 (510)
                      ..+++|+.||.|++|+....       .......+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++......  
T Consensus       133 ~~lasGs~dg~i~lWd~~~~-------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  205 (435)
T 4e54_B          133 STVAVGSKGGDIMLWNFGIK-------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS  205 (435)
T ss_dssp             TCEEEEETTSCEEEECSSCC-------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred             CEEEEEeCCCEEEEEECCCC-------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence            35778999999999985431       1234556789999999999998 7899999999999999999876543322  


Q ss_pred             cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY  343 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~  343 (510)
                      ..+...+.+++|+|++.+|++|+.||.|++||+. ++.+..+.+|...|.+++|+|.+..++++|+.|+.|++||++++.
T Consensus       206 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~  284 (435)
T 4e54_B          206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR  284 (435)
T ss_dssp             SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred             CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence            2345567899999999999999999999999986 566778899999999999999666789999999999999998876


Q ss_pred             Eeeee----eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc-----ccEEEEEEcCCCCEEEEEe-
Q 010470          344 CVNTI----IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-----AAVTSISLSRSGNIILTSG-  413 (510)
Q Consensus       344 ~~~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~-  413 (510)
                      ....+    .+...|++++|+|+|.+|++|+.||.|++||+.++.....+..+..     ..+....|+|++.++++++ 
T Consensus       285 ~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (435)
T 4e54_B          285 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY  364 (435)
T ss_dssp             SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred             ccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence            54433    2335699999999999999999999999999999887766654421     1233456777777666654 


Q ss_pred             -----------cCCcEEEEEcCCceeeeEeec-CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470          414 -----------RDNLHNLFDIRSLEVCGSLRA-TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV  475 (510)
Q Consensus       414 -----------~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  475 (510)
                                 .++.|++||..+++.+..+.. +...+.+   ..+|+|+|.+|++|+ |+.|+||++.+++..
T Consensus       365 ~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s---~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          365 PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS---LNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCC---EEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEE---EEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence                       235799999999988877653 3333322   136999999999887 789999999987653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.5e-34  Score=280.57  Aligned_cols=283  Identities=16%  Similarity=0.160  Sum_probs=241.0

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee-----cccccccceeEEEEecCCCEEEEEeCCCeEE
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-----TLYGCLGSVLDLAITHDNRSVIAASSSNNLY  292 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  292 (510)
                      ...+..+ ..+.+++|+|++.++++++.++.|++||+.+++...     .+.+|.+.|.+++|+|++.++++++.|+.|+
T Consensus       116 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~  194 (433)
T 3bws_A          116 ISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH  194 (433)
T ss_dssp             EEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred             EEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence            3334444 346699999988888888889999999999988776     4568889999999999999999999999999


Q ss_pred             EEEcCCCCeeEeecCCCCceEEEEEecCCCCEE-EEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec-
Q 010470          293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV-VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH-  370 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-  370 (510)
                      +||+.+++....+..|...+.+++|+| ++..+ ++++.|+.|++||+.+++.+..+..+..+.+++|+|+|+.+++++ 
T Consensus       195 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          195 VFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             EEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEE
T ss_pred             EEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEEC
Confidence            999999999999999999999999999 56655 566689999999999999988888888899999999999999887 


Q ss_pred             -------CCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEE-EEEecCCcEEEEEcCCceeeeEeecCCCeeecC
Q 010470          371 -------IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII-LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN  442 (510)
Q Consensus       371 -------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  442 (510)
                             .||.|++||+.+++....+...  ..+.+++|+|+++.+ ++++.++.|.+||+.+++....+.....     
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-----  346 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLIDTIGPP--GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDK-----  346 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEEEEEEEE--ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSS-----
T ss_pred             CCCccccCCCeEEEEECCCCcEEeeccCC--CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCC-----
Confidence                   5889999999999877766433  578999999999755 5668899999999999888877753322     


Q ss_pred             ceeEEEcCCCCEEEEEcC---------------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeC-CCeE
Q 010470          443 WSRSCISPDESYVAAGSA---------------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADK-NGVV  506 (510)
Q Consensus       443 ~~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i  506 (510)
                      +..++|+|+|+++++++.               ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. ||.|
T Consensus       347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i  425 (433)
T 3bws_A          347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQI  425 (433)
T ss_dssp             EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred             CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeE
Confidence            345899999999888776               57999999999998888875 457899999999999988775 9999


Q ss_pred             EEcC
Q 010470          507 CVWT  510 (510)
Q Consensus       507 ~iwd  510 (510)
                      ++|+
T Consensus       426 ~v~~  429 (433)
T 3bws_A          426 RVYR  429 (433)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.4e-35  Score=281.71  Aligned_cols=276  Identities=19%  Similarity=0.219  Sum_probs=228.3

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCC-------cce
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTG-------SLS  260 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~  260 (510)
                      ++.++.+|.+.+|+.....     ........+.+|.+.|++++|+| ++.+|++|+.||.|+|||+.++       ..+
T Consensus        50 ~~~~~~~g~i~v~~~~~~~-----~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~  124 (402)
T 2aq5_A           50 ICEASGGGAFLVLPLGKTG-----RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV  124 (402)
T ss_dssp             EBCCSSSCCEEEEETTCCE-----ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCS
T ss_pred             EEEEcCCCEEEEEECccCC-----CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCce
Confidence            3456778888888753311     11234556889999999999999 9999999999999999999987       567


Q ss_pred             ecccccccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCCCeeEee--cCCCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470          261 STLYGCLGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSGRVRHTL--TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW  337 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw  337 (510)
                      ..+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+  .+|...|.+++|+| ++.+|++++.||.|++|
T Consensus       125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw  203 (402)
T 2aq5_A          125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVI  203 (402)
T ss_dssp             EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred             EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEE
Confidence            7888999999999999998 69999999999999999999999999  88999999999999 88999999999999999


Q ss_pred             ECCCCeEeeee-eecCc--eeEEEEcCCCCEEEEe---cCCCcEEEEECCCCce-eeeecccccccEEEEEEcCCCCEEE
Q 010470          338 DLHKGYCVNTI-IFHSN--CNALAFSMDGQTIFSG---HIDGNLRLWDIQTGKL-LSEVAAHSLAAVTSISLSRSGNIIL  410 (510)
Q Consensus       338 d~~~~~~~~~~-~~~~~--i~~i~~~~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~  410 (510)
                      |++++..+..+ ..+..  +.++.|+|++.+|++|   +.||.|++||++++.. +......+...+.++.|+|++.+++
T Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  283 (402)
T 2aq5_A          204 EPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVY  283 (402)
T ss_dssp             ETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEE
T ss_pred             eCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEE
Confidence            99999998888 44432  7999999999999999   7999999999988764 3333333337899999999999987


Q ss_pred             E-EecCCcEEEEEcCCcee-eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470          411 T-SGRDNLHNLFDIRSLEV-CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       411 ~-~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      + ++.||.|++||+.+++. ...+..+.  ....+..++|+|++.++++  .++.+++|++.++..
T Consensus       284 ~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          284 LCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             EEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            5 55799999999998774 44444332  2234556999999998874  466899999987643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-35  Score=284.43  Aligned_cols=257  Identities=12%  Similarity=0.056  Sum_probs=209.0

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      -..+|.+++|+|||+++||++.|++|+  |...+   ..+.+|...|.+++|+|+|       .++.+.+|+   ++...
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~   78 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQNG   78 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCSSC
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEe---CCCce
Confidence            457899999999999999999999999  64444   4557999999999999999       455555554   33222


Q ss_pred             eec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC------ceeEEEEcCCCCEEEEecCCCcEE
Q 010470          304 TLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS------NCNALAFSMDGQTIFSGHIDGNLR  376 (510)
Q Consensus       304 ~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~i~~i~~~~~~~~l~~~~~dg~i~  376 (510)
                      .+. .|...|.+++|+| ++..|++++.||.|++||..+  ++..+. +.      .+.+++|+|||++|++|+.||+|+
T Consensus        79 ~~~~~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           79 LLNSQPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             SSTTSCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             EeecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            333 4688999999999 899999999999999999643  556555 43      399999999999999999999999


Q ss_pred             EEECCCCce-------eeee----cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee---eeEee-cCCCeeec
Q 010470          377 LWDIQTGKL-------LSEV----AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV---CGSLR-ATGNRVAS  441 (510)
Q Consensus       377 i~d~~~~~~-------~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~-~~~~~~~~  441 (510)
                      +||+.++..       +..+    .+| ...|.+++|+|+|  +++++.|+.|++||+.++..   ...+. ++...+. 
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~-  230 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT-  230 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC-
T ss_pred             EEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE-
Confidence            999988753       4555    333 3799999999999  88899999999999988763   23443 4444443 


Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEE--eCCCCcEEEeeCCCeEEEcC
Q 010470          442 NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW--SGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       442 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~iwd  510 (510)
                         .++|+  |++|++++ +|+|++||+.+++......+|.+.|.+++|  +|++..|++++.||+ ++|.
T Consensus       231 ---svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          231 ---DLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             ---CEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             ---EEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence               48898  68999988 699999999988774444379999999999  999999999999999 8883

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-34  Score=277.03  Aligned_cols=242  Identities=17%  Similarity=0.203  Sum_probs=213.1

Q ss_pred             ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 010470          263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH  340 (510)
Q Consensus       263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~  340 (510)
                      +..|..+|++++|+|++++|++++.|+.|++||+.+++  ....+.+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECC
Confidence            34588999999999999999999999999999999887  8888999999999999999 88999999999999999999


Q ss_pred             CCeEeeeee---ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCce---eeeecccccccEEEEEEcCCCCEEEEEec
Q 010470          341 KGYCVNTII---FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL---LSEVAAHSLAAVTSISLSRSGNIILTSGR  414 (510)
Q Consensus       341 ~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  414 (510)
                      ++.....+.   ....+.+++|+|++++|++++.||.|++||+..+..   ...+...+...|.+++|+|++++|++++.
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            887555443   345699999999999999999999999999988763   34443443489999999999999999999


Q ss_pred             CCcEEEEEcC------------------CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470          415 DNLHNLFDIR------------------SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR  476 (510)
Q Consensus       415 d~~i~i~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  476 (510)
                      ||.|++||++                  .+.....+..+...+    .+++|+|++.+|++++.||.|++||+.+++.+.
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  238 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV----HGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  238 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE----EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE----EEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence            9999999954                  566777776555544    449999999999999999999999999999999


Q ss_pred             cccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          477 TLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       477 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+..|..+|.+++|+|++.+|+++ .||.|++|+
T Consensus       239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~  271 (372)
T 1k8k_C          239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFT  271 (372)
T ss_dssp             EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred             EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence            999999999999999999888777 899999996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.4e-36  Score=286.24  Aligned_cols=240  Identities=14%  Similarity=0.173  Sum_probs=198.3

Q ss_pred             cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC--CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      ..+.++|++++|+|++++|++++.|+.|++||+.++  +....+.+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC----
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCC
Confidence            346779999999999999999999999999999988  78888999999999999999 789999999999999999998


Q ss_pred             Ce---Eeeeee-ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc---eeeeecccccccEEEEEEcCCCCEEEEEec
Q 010470          342 GY---CVNTII-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK---LLSEVAAHSLAAVTSISLSRSGNIILTSGR  414 (510)
Q Consensus       342 ~~---~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  414 (510)
                      +.   ....+. +...+.+++|+|++++|++|+.||.|++||+++++   ....+...+...|.+++|+|++++|++++.
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence            77   344443 34569999999999999999999999999999887   366676634489999999999999999999


Q ss_pred             CCcEEEEEcCC------------------ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce--
Q 010470          415 DNLHNLFDIRS------------------LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI--  474 (510)
Q Consensus       415 d~~i~i~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--  474 (510)
                      |+.|++||+..                  +.....+ .+..    .+.+++|+|+|++|++++.||.|++||+.+++.  
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG----WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS----SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc----eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            99999999852                  3344444 3333    355699999999999999999999999999987  


Q ss_pred             --eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          475 --VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       475 --~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                        +..+.+|..+|.+++|+|++++|++++.|+.+.+|
T Consensus       242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  278 (377)
T 3dwl_C          242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ  278 (377)
T ss_dssp             EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred             eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence              88889999999999999999999999877776444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-35  Score=277.34  Aligned_cols=265  Identities=11%  Similarity=0.054  Sum_probs=213.7

Q ss_pred             EEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC---------CCCee
Q 010470          232 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN---------SGRVR  302 (510)
Q Consensus       232 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---------~~~~~  302 (510)
                      .+.+++.+|++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|+.|++|+..         +++.+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            445678899999999999999999998877776  567888889988   9999999999999665         55544


Q ss_pred             Eeec-CCCCceEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          303 HTLT-GHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       303 ~~~~-~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                      ..+. +|.+.|.+++|+|. ++.++++++.||.|++||++++.+......+  ..+.+++|+|+|.+|++|+.||.|++|
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY  197 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence            4444 67789999999982 5789999999999999999999887665433  359999999999999999999999999


Q ss_pred             ECCCCcee-eeecc-cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec---CCCeeecCceeEEEcCCCC
Q 010470          379 DIQTGKLL-SEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA---TGNRVASNWSRSCISPDES  453 (510)
Q Consensus       379 d~~~~~~~-~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~  453 (510)
                      |+++++.+ ..+.. |. .+|++++|+|+|.+|++++ ++.|++||++++.....+..   +...+..  .+++|+|+|+
T Consensus       198 d~~~~~~~~~~~~~~h~-~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~  273 (343)
T 3lrv_A          198 NLSSPDQASSRFPVDEE-AKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT--VTYDIDDSGK  273 (343)
T ss_dssp             ESSCTTSCCEECCCCTT-SCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CC--EEEEECTTSS
T ss_pred             ECCCCCCCccEEeccCC-CCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccc--eEEEECCCCC
Confidence            99999887 77777 54 8999999999999999999 55999999998876554443   1122211  3589999999


Q ss_pred             EEEEEcC-CCeEEEEeCCCcceeecccccCcCEEEEEEeC---CCCcEEEeeCCCeEEEc
Q 010470          454 YVAAGSA-DGSVYIWSISKADIVRTLKEHTAPVLSCSWSG---LGKPLASADKNGVVCVW  509 (510)
Q Consensus       454 ~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~iw  509 (510)
                      +|++++. |+.|+||++.........    .++..++|+|   ++..+++++.||.+.++
T Consensus       274 ~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          274 NMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             EEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence            9999988 999999998765433222    5677888888   78889988889888765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.5e-34  Score=279.75  Aligned_cols=245  Identities=21%  Similarity=0.311  Sum_probs=208.6

Q ss_pred             ecccccccceeEEEEecC-CCEEEEEeCCCeEEEEEcCC----------CCeeEeecCCCCceEEEEEecCCCCEEEEEe
Q 010470          261 STLYGCLGSVLDLAITHD-NRSVIAASSSNNLYVWDVNS----------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAA  329 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~  329 (510)
                      .....|.+.|++++|+|+ +.+|++++.+|.|++|++.+          ......+.+|...|++++|+|.+..+|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            345679999999999997 67899999999999999986          5778888999999999999994444999999


Q ss_pred             CCCcEEEEECCCCeE-------eeeeeec-CceeEEEEcC-CCCEEEEecCCCcEEEEECCCC---ceeeeecccccccE
Q 010470          330 YDRTLKVWDLHKGYC-------VNTIIFH-SNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTG---KLLSEVAAHSLAAV  397 (510)
Q Consensus       330 ~dg~i~iwd~~~~~~-------~~~~~~~-~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~i  397 (510)
                      .||.|++||+.++..       ...+..+ ..+.+++|+| ++.+|++++.||.|++||++++   +.+..+..+. ..|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v  280 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-AEV  280 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS-SCE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC-CCe
Confidence            999999999987432       2333333 4699999999 7889999999999999999987   5666666665 899


Q ss_pred             EEEEEcCCCC-EEEEEecCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCC---
Q 010470          398 TSISLSRSGN-IILTSGRDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISK---  471 (510)
Q Consensus       398 ~~i~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~---  471 (510)
                      ++++|+|++. ++++++.||.|++||+++ ...+..+..+...+.    +++|+|++. +|++++.||.|+|||+..   
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~----~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----QVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEE----EEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEE----EEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            9999999987 688999999999999997 556777776665554    499999985 699999999999999987   


Q ss_pred             -----------cceeecccccCcCEEEEEEeCCCC-cEEEeeCCCeEEEcC
Q 010470          472 -----------ADIVRTLKEHTAPVLSCSWSGLGK-PLASADKNGVVCVWT  510 (510)
Q Consensus       472 -----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd  510 (510)
                                 ...+..+.+|...|.+++|+|+++ +|++++.||.|++|+
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                       356677788999999999999999 899999999999995

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-35  Score=290.73  Aligned_cols=265  Identities=15%  Similarity=0.191  Sum_probs=218.3

Q ss_pred             EEecCCCEEEEeeCCCeEEEEeCCCCcceecc-cccccceeEEEEec-CCCEEEEEeCCCeEEEEEcCC---CC---eeE
Q 010470          232 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTL-YGCLGSVLDLAITH-DNRSVIAASSSNNLYVWDVNS---GR---VRH  303 (510)
Q Consensus       232 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~---~~---~~~  303 (510)
                      .|+|++..+++++      .|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||.|++||+.+   +.   ...
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            3677888777765      388 457777888 88999999999999 999999999999999999976   43   233


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC---CCeEeeeeee-------------cCceeEEE--EcCCCCE
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH---KGYCVNTIIF-------------HSNCNALA--FSMDGQT  365 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~-------------~~~i~~i~--~~~~~~~  365 (510)
                      .+ .|...|.+++|+| ++.+|++++.||.|++||+.   ++........             ...+.++.  ++|++.+
T Consensus       107 ~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (437)
T 3gre_A          107 TY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL  184 (437)
T ss_dssp             EE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred             ec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence            33 4999999999999 88999999999999999994   4544433321             22355555  5678999


Q ss_pred             EEEecCCCcEEEEECCCCceeeeeccc-ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee-cCCCeeecCc
Q 010470          366 IFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR-ATGNRVASNW  443 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~  443 (510)
                      |++|+.||.|++||+++++.+..+..+ +...|++++|+|++.+|++++.||.|++||++++..+..+. .+...+    
T Consensus       185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v----  260 (437)
T 3gre_A          185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI----  260 (437)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE----
T ss_pred             EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce----
Confidence            999999999999999999999998873 33899999999999999999999999999999999888876 444333    


Q ss_pred             eeEEE----cCCCCEEEEEcCCCeEEEEeCCCcceeecccc--------------------------cCcCEEEEEEeCC
Q 010470          444 SRSCI----SPDESYVAAGSADGSVYIWSISKADIVRTLKE--------------------------HTAPVLSCSWSGL  493 (510)
Q Consensus       444 ~~~~~----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~  493 (510)
                      .++++    +|++.+|++|+.||.|++||+.+++.+..+.+                          |...|++++|+ +
T Consensus       261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~  339 (437)
T 3gre_A          261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N  339 (437)
T ss_dssp             EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred             EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence            34644    45788999999999999999998886655543                          55678899999 7


Q ss_pred             CCcEEEeeCCCeEEEcC
Q 010470          494 GKPLASADKNGVVCVWT  510 (510)
Q Consensus       494 ~~~l~s~~~dg~i~iwd  510 (510)
                      +++|++|+.||.|++||
T Consensus       340 ~~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          340 DKILLTDEATSSIVMFS  356 (437)
T ss_dssp             TEEEEEEGGGTEEEEEE
T ss_pred             ceEEEecCCCCeEEEEE
Confidence            78999999999999996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.9e-34  Score=279.96  Aligned_cols=277  Identities=25%  Similarity=0.448  Sum_probs=224.2

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL  267 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  267 (510)
                      .+++++.||.+++|+...         ..+...+.+|.+.|.+++|  ++++|++|+.||.|++||+.+++.+..+.+|.
T Consensus       145 ~l~~g~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~  213 (435)
T 1p22_A          145 KIVSGLRDNTIKIWDKNT---------LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC  213 (435)
T ss_dssp             EEEEEESSSCEEEEESSS---------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC
T ss_pred             EEEEEeCCCeEEEEeCCC---------CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC
Confidence            456778889999997543         3467788999999999999  78899999999999999999999999999999


Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee---EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR---HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC  344 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  344 (510)
                      ..|.+++|+  +.++++|+.||.|++||+.++...   ..+.+|...|.++.|   ++.++++|+.||.|++||+.++.+
T Consensus       214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~  288 (435)
T 1p22_A          214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEF  288 (435)
T ss_dssp             SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCE
T ss_pred             CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcE
Confidence            999999996  458999999999999999987755   677899999999998   468999999999999999999999


Q ss_pred             eeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          345 VNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       345 ~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      +..+..+ ..+.++.+  ++.++++|+.||.|++||+++++.+..+..+. ..|.++.|  ++.+|++++.||.|++||+
T Consensus       289 ~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~--~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          289 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred             EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc-CcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence            9988866 45888888  57899999999999999999999999998877 89999998  7899999999999999999


Q ss_pred             CCce---------eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470          424 RSLE---------VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG  492 (510)
Q Consensus       424 ~~~~---------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  492 (510)
                      .++.         ....+..+...+..    ++|  ++.+|++|+.||.|++||+.+........ ...+..++.|.+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~h~~~v~~----l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~  434 (435)
T 1p22_A          364 VAALDPRAPAGTLCLRTLVEHSGRVFR----LQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYIS  434 (435)
T ss_dssp             HHHTSTTSCTTTTEEEEECCCSSCCCC----EEE--CSSCEEECCSSSEEEEEC------------------------
T ss_pred             CCCCCccccccchheeeccCCCCCeEE----EEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeeec
Confidence            8765         67777777665544    667  78999999999999999998876544433 233455555543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.9e-34  Score=275.98  Aligned_cols=316  Identities=19%  Similarity=0.263  Sum_probs=221.8

Q ss_pred             HHhhhhcCCceEEecccccccccccCCC----ccceeeccccccceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCccee
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVP----STCKHKINAHEGGCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSS  261 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~  261 (510)
                      ..+++++.||.+++|+............    ........+|.+.|.+++|+| ++.+|++++.||.|++||+.++....
T Consensus        57 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  136 (408)
T 4a11_B           57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD  136 (408)
T ss_dssp             CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce
Confidence            4467788899999998554211100000    000112246999999999999 78899999999999999999988877


Q ss_pred             cccccccceeEEEEecCC---CEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          262 TLYGCLGSVLDLAITHDN---RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       262 ~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      .+. +...+.++.|+|.+   .++++++.+|.|++||+.+++....+.+|...|.+++|+|.+..++++++.||.|++||
T Consensus       137 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d  215 (408)
T 4a11_B          137 VFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD  215 (408)
T ss_dssp             EEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             ecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEE
Confidence            665 67889999999854   49999999999999999999999999999999999999994444799999999999999


Q ss_pred             CCCCe-Eeeee----------------eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc----cccE
Q 010470          339 LHKGY-CVNTI----------------IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS----LAAV  397 (510)
Q Consensus       339 ~~~~~-~~~~~----------------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i  397 (510)
                      ++++. ++..+                .....+.+++|+|++.+|++++.||.|++||+.+++....+..+.    ...+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  295 (408)
T 4a11_B          216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL  295 (408)
T ss_dssp             TTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCC
T ss_pred             CCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccc
Confidence            98765 33332                223459999999999999999999999999999887655443221    1122


Q ss_pred             EEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470          398 TSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT  477 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  477 (510)
                      ........+..+++++.++.|++||+.+++.+..+..+...+..    ++|+|++++|++|+.||.|++||+.+++.+..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~----~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC----CVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             CCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEE----EEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             eeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEE----EEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence            22233344566777788999999999999999999887766554    99999999999999999999999999888766


Q ss_pred             ccccCcCEEEEEEeC-CCCcEEEeeCCCeEEEcC
Q 010470          478 LKEHTAPVLSCSWSG-LGKPLASADKNGVVCVWT  510 (510)
Q Consensus       478 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd  510 (510)
                      ...+...   ..+.| ....+.+++.++.+++|+
T Consensus       372 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          372 DDETTTK---SQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             ----------------------------------
T ss_pred             CCceEec---cccccccceeecccCccCceeecC
Confidence            5443322   23333 233556677899999995

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=9.4e-33  Score=265.57  Aligned_cols=276  Identities=16%  Similarity=0.214  Sum_probs=231.8

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCL  267 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~  267 (510)
                      ++.++.|+.+++|+...         .++...+.+|. .+.+++|+|+|+++ ++++.|+.|++||+.+++.+..+..+.
T Consensus         5 ~vs~~~d~~v~v~d~~~---------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            5 YIANSESDNISVIDVTS---------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEETTTTEEEEEETTT---------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEcCCCCEEEEEECCC---------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence            35567889999998543         23555666665 48999999999977 677789999999999999888776655


Q ss_pred             cceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEE-EEEeCCCcEEEEECCCCeEe
Q 010470          268 GSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV-VSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~  345 (510)
                       .+.+++|+|+++++++++ .++.|++||+.+++.+..+..+ ..+.+++|+| ++..+ ++++.++.|++||+.+++.+
T Consensus        75 -~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             -CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEE
Confidence             899999999999886655 6799999999999988887754 5689999999 66655 78888999999999999999


Q ss_pred             eeeeecCceeEEEEcCCCCEE-EEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe---cCCcEEEE
Q 010470          346 NTIIFHSNCNALAFSMDGQTI-FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG---RDNLHNLF  421 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~i~  421 (510)
                      ..+..+..+.+++|+|+++.+ ++++.+|.|++||+++++....+..+  ..+.+++|+|+|+++++++   .++.|++|
T Consensus       152 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             EEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--CCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence            998888889999999999987 57788999999999999888777654  6899999999999999888   68999999


Q ss_pred             EcCCceeeeEeecCCCeeecCceeEEEcCCCCEE-EEEcCCCeEEEEeCCCcceeecccccCcC
Q 010470          422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYV-AAGSADGSVYIWSISKADIVRTLKEHTAP  484 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  484 (510)
                      |+.+++.+..+..+...     ..++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus       230 d~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          230 DTGTNKITARIPVGPDP-----AGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             ETTTTEEEEEEECCSSE-----EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             ECCCCeEEEEEecCCCc-----cEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence            99999888887765432     348999999987 67788999999999999988887665543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=8e-34  Score=276.20  Aligned_cols=250  Identities=20%  Similarity=0.318  Sum_probs=213.7

Q ss_pred             eeeccccccceEEEEEecC-CCEEEEeeCCCeEEEEeCCC----------CcceecccccccceeEEEEecCCC-EEEEE
Q 010470          218 KHKINAHEGGCASILFEYN-SARLISGGQDKSIKLWDTNT----------GSLSSTLYGCLGSVLDLAITHDNR-SVIAA  285 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~  285 (510)
                      .....+|.+.|++++|+|+ +.+|++++.||.|++|++.+          ......+.+|...|++++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3456789999999999997 78999999999999999976          566777889999999999999998 99999


Q ss_pred             eCCCeEEEEEcCCCCe-------eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC---eEeeeeeec-Cce
Q 010470          286 SSSNNLYVWDVNSGRV-------RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---YCVNTIIFH-SNC  354 (510)
Q Consensus       286 ~~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~i  354 (510)
                      +.||.|++|++.++..       ...+.+|...|.+++|+|.++.+|++++.||.|++||++++   ..+..+..+ ..+
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987432       45677899999999999977889999999999999999977   455566444 569


Q ss_pred             eEEEEcCCCC-EEEEecCCCcEEEEECCC-CceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCC------
Q 010470          355 NALAFSMDGQ-TIFSGHIDGNLRLWDIQT-GKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRS------  425 (510)
Q Consensus       355 ~~i~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~------  425 (510)
                      ++++|+|++. ++++|+.||.|++||+++ +.++..+..+. ..|.+++|+|++. +|++++.|+.|++||+..      
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~-~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS-SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC-CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            9999999887 688999999999999998 55677777766 8999999999985 689999999999999987      


Q ss_pred             --------ceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCCc
Q 010470          426 --------LEVCGSLRATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       426 --------~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~  472 (510)
                              ...+..+.++...+    ..++|+|++. +|++++.||.|+||++...
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v----~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKI----SDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCE----EEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccccccCCcceEEEcCCCCCCc----eEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                    24445555555444    4599999999 8999999999999998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=7.3e-33  Score=266.35  Aligned_cols=262  Identities=16%  Similarity=0.187  Sum_probs=225.6

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEE-EEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEE
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSV-IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD  316 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~  316 (510)
                      ..+++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            367889999999999999999888887664 58999999999987 566689999999999999988887655 899999


Q ss_pred             EecCCCCEE-EEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE-EEecCCCcEEEEECCCCceeeeeccccc
Q 010470          317 VSKISSRHV-VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI-FSGHIDGNLRLWDIQTGKLLSEVAAHSL  394 (510)
Q Consensus       317 ~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~  394 (510)
                      |+| ++.++ ++++.++.|++||+.+++.+..+..+..+.+++|+|+|+.+ ++++.++.|++||+.+++.+..+..+  
T Consensus        81 ~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--  157 (391)
T 1l0q_A           81 VSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--  157 (391)
T ss_dssp             ECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--
T ss_pred             ECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--
Confidence            999 66655 55666799999999999999988888889999999999977 68888999999999999988887765  


Q ss_pred             ccEEEEEEcCCCCEE-EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc---CCCeEEEEeCC
Q 010470          395 AAVTSISLSRSGNII-LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS---ADGSVYIWSIS  470 (510)
Q Consensus       395 ~~i~~i~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~i~iwd~~  470 (510)
                      ..+.+++|+|+++++ ++++.++.|++||+++++....+.... .    +..++|+|+|++|++++   .++.|++||+.
T Consensus       158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~----~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-A----PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-E----EEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-C----ccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            567999999999987 567788999999999998877776433 2    34489999999999888   68999999999


Q ss_pred             CcceeecccccCcCEEEEEEeCCCCcE-EEeeCCCeEEEcC
Q 010470          471 KADIVRTLKEHTAPVLSCSWSGLGKPL-ASADKNGVVCVWT  510 (510)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd  510 (510)
                      +++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||
T Consensus       233 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          233 TNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             TTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence            999888887765 57899999999977 6778899999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.7e-32  Score=254.44  Aligned_cols=263  Identities=22%  Similarity=0.319  Sum_probs=220.6

Q ss_pred             cCCceEEecccccccccccCCCcccee--eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccce
Q 010470          193 QVDGVVRRSEEGAEFFAESTVPSTCKH--KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSV  270 (510)
Q Consensus       193 ~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  270 (510)
                      +.|+.+++|+...         .++..  .+.+|...|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...+
T Consensus        42 g~D~tV~iWd~~t---------g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~  112 (318)
T 4ggc_A           42 ALDNSVYLWSASS---------GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV  112 (318)
T ss_dssp             EETTEEEEEETTT---------CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred             EeCCEEEEEECCC---------CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceE
Confidence            4588999998543         22333  456788899999999999999999999999999999999999999999888


Q ss_pred             eEEEEecCCCEEEEEeCCCeEEEEEcCCCC-eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee--
Q 010470          271 LDLAITHDNRSVIAASSSNNLYVWDVNSGR-VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT--  347 (510)
Q Consensus       271 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--  347 (510)
                      .++.+  ++..+++++.++.+.+|+...+. .+..+.+|...+..+.+.+ .+.++++++.||.|++||+.+++....  
T Consensus       113 ~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  189 (318)
T 4ggc_A          113 GSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPL  189 (318)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred             EEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccce
Confidence            76554  57899999999999999987754 6677889999999999998 889999999999999999987653221  


Q ss_pred             ---eeecCceeEEEEcCCCCEE---EEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe--cCCcEE
Q 010470          348 ---IIFHSNCNALAFSMDGQTI---FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG--RDNLHN  419 (510)
Q Consensus       348 ---~~~~~~i~~i~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~  419 (510)
                         ......+.++.++|++..+   ++++.++.|++||.............  ..+..+.|+|++..+++++  .|+.|+
T Consensus       190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~sg~~d~~i~  267 (318)
T 4ggc_A          190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLV  267 (318)
T ss_dssp             EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS--SCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce--eeeeeeeecccccceEEEEEcCCCEEE
Confidence               1233568999999976533   46778999999999888877665544  7899999999999887755  789999


Q ss_pred             EEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470          420 LFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  473 (510)
                      +||+++++.+..+.+|...+..    ++|+|+|++|++|+.||+|+|||+....
T Consensus       268 iwd~~~~~~~~~l~gH~~~V~~----l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          268 IWKYPTMAKVAELKGHTSRVLS----LTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEETTTCCEEEEECCCSSCEEE----EEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEECCCCcEEEEEcCCCCCEEE----EEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            9999999999999988776554    9999999999999999999999987643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-34  Score=295.18  Aligned_cols=245  Identities=21%  Similarity=0.346  Sum_probs=207.2

Q ss_pred             ecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC--CCCeeEeecCCCCceEEEEEecCC-CCEEEEEeCCCcEEEE
Q 010470          261 STLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN--SGRVRHTLTGHTDKVCAVDVSKIS-SRHVVSAAYDRTLKVW  337 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iw  337 (510)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.  ++.....+.+|.++|.+++|+|.. +++|++|+.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4577999999999999999999999999999999998  456788899999999999999832 8899999999999999


Q ss_pred             ECCCCe--Eeeeeeec-CceeEEEEcCC--CCEEEEecCCCcEEEEECCCCc--eeeeecccccccEEEEEEcC------
Q 010470          338 DLHKGY--CVNTIIFH-SNCNALAFSMD--GQTIFSGHIDGNLRLWDIQTGK--LLSEVAAHSLAAVTSISLSR------  404 (510)
Q Consensus       338 d~~~~~--~~~~~~~~-~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~i~~~~------  404 (510)
                      |+.++.  .+..+..+ ..|.+++|+|+  +..+++|+.||.|++||++++.  ....+..+. ..|.++.|+|      
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA-IGVNSASWAPATIEED  161 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS-SCEEEEEECCCC----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC-CceEEEEecCcccccc
Confidence            999886  45555444 56999999999  9999999999999999998873  333444554 8999999999      


Q ss_pred             -------CCCEEEEEecCCcEEEEEcCCc----eeeeEeecCCCeeecCceeEEEcCC---CCEEEEEcCCCeEEEEeCC
Q 010470          405 -------SGNIILTSGRDNLHNLFDIRSL----EVCGSLRATGNRVASNWSRSCISPD---ESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       405 -------~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~dg~i~iwd~~  470 (510)
                             ++.++++++.||.|++||++++    .....+..|...+    .+++|+|+   +.+|++|+.||.|++||+.
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V----~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV----RDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE----EEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE----EEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                   5899999999999999999876    4445555555544    45999999   9999999999999999998


Q ss_pred             Ccc-----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          471 KAD-----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       471 ~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++.     .......|...|++++|+|+|.+|++|+.||.|++||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            864     3344456889999999999999999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=277.07  Aligned_cols=242  Identities=15%  Similarity=0.276  Sum_probs=199.4

Q ss_pred             ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-----------eeEeecCCC------------CceEEEEEecCC
Q 010470          265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-----------VRHTLTGHT------------DKVCAVDVSKIS  321 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~i~~~~~~  321 (510)
                      .+.+.|++++|+|++++|++|+.||.|+|||+.++.           ....+.+|.            ..|.+++|+| +
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence            467899999999999999999999999999999876           577888998            8899999999 5


Q ss_pred             C--CEEEEEeCCCcEEEEECCCCeEe---------------------------------------eee-e-ecCceeEEE
Q 010470          322 S--RHVVSAAYDRTLKVWDLHKGYCV---------------------------------------NTI-I-FHSNCNALA  358 (510)
Q Consensus       322 ~--~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~~-~-~~~~i~~i~  358 (510)
                      +  ..+++++.||.|++||+.++...                                       ..+ . +...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            5  78999999999999998764432                                       111 2 335699999


Q ss_pred             EcCCCCEEEEecCCCcEEEEECCC-Cceeee-------ecccccccEEEEEEcCCC-CEEEEEecCCcEEEEEcCCcee-
Q 010470          359 FSMDGQTIFSGHIDGNLRLWDIQT-GKLLSE-------VAAHSLAAVTSISLSRSG-NIILTSGRDNLHNLFDIRSLEV-  428 (510)
Q Consensus       359 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~-------~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-  428 (510)
                      |+|++++|++| .||.|++||+++ +..+..       +..+. ..|.+++|+|++ .+|++++.||.|++||++++.. 
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT-EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC-CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccC-cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            99999999999 799999999984 444432       33444 789999999998 9999999999999999998876 


Q ss_pred             ---eeEeecCCCe--------eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-cceeecccccCcC------------
Q 010470          429 ---CGSLRATGNR--------VASNWSRSCISPDESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAP------------  484 (510)
Q Consensus       429 ---~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~------------  484 (510)
                         ...+..+..+        ....+.+++|+|+|++|++++. |.|++||+.+ ++++..+.+|...            
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence               5666665531        0014556999999999999998 9999999997 8888888887642            


Q ss_pred             ---EEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          485 ---VLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       485 ---v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                         +..++|+|++++|++|+.||.|++||
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd  370 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNFFRMFD  370 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred             cccceEEEECCCCCEEEEeccCCEEEEEE
Confidence               33499999999999999999999996

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-33  Score=268.66  Aligned_cols=278  Identities=8%  Similarity=0.015  Sum_probs=212.6

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.|++++  + +.           ....+++|.+.|.+++|+|+|       .++.+.+|+.... ....+ .|
T Consensus        28 ~~iASas~D~TV~--d-~~-----------~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~~~-~~   84 (588)
T 2j04_A           28 TLYLTTFPDISIG--Q-PK-----------YAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLLNS-QP   84 (588)
T ss_dssp             CEEEECSSSEEEE--E-EC-----------CCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSSTT-SC
T ss_pred             CEEEEEcCCceee--c-cc-----------ccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEeec-CC
Confidence            4466777777777  2 11           113347999999999999998       4666666654422 22233 45


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCC-----ceEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTD-----KVCAVDVSKISSRHVVSAAYDRTLKVWDLHK  341 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~  341 (510)
                      ...|.+++|+|+|.+|++++.||.|++||..+  ++..+. |..     .|.+++|+| ++++|++|+.||+|++||+.+
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCC
Confidence            88999999999999999999999999999544  666666 665     499999999 899999999999999999998


Q ss_pred             Ce-------Eeeeeeec-----CceeEEEEcCCCCEEEEecCCCcEEEEECCCCce---eeeecccccccEEEEEEcCCC
Q 010470          342 GY-------CVNTIIFH-----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL---LSEVAAHSLAAVTSISLSRSG  406 (510)
Q Consensus       342 ~~-------~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~  406 (510)
                      +.       .+.++..+     ..|.+++|+|+|  +++++.|+.|++||+..+..   ...+..++...|.+++|+  |
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g  236 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D  236 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred             CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence            75       24555332     369999999999  78888899999999987773   245543333789999999  6


Q ss_pred             CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE--cCCCCEEEEEcCCCeEEEEeCCC------c------
Q 010470          407 NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI--SPDESYVAAGSADGSVYIWSISK------A------  472 (510)
Q Consensus       407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~~~~~dg~i~iwd~~~------~------  472 (510)
                      ..+++++ ++.|++||+.++.......+|...+.    .+.|  +|++..|++++.||+ ++|..+.      +      
T Consensus       237 ~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~----~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~  310 (588)
T 2j04_A          237 YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH----IIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYL  310 (588)
T ss_dssp             TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC----EEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHH
T ss_pred             CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE----EEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEc
Confidence            8888887 69999999998877444335555444    4899  999999999999999 9998631      1      


Q ss_pred             -----------ceeecccccCcCEEEEEEeCCCCcEEEeeC
Q 010470          473 -----------DIVRTLKEHTAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       473 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  502 (510)
                                 ..+..+. +...|.+++|+|||+.+|+++.
T Consensus       311 d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          311 EKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred             CCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence                       1122222 2445999999999999998763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.6e-33  Score=265.92  Aligned_cols=268  Identities=14%  Similarity=0.178  Sum_probs=204.1

Q ss_pred             CceEEeccccccccc-ccCCCccceeeccccccceEEEEEecCCCEEEEe-----------eCCCeEEEEeCCCCccee-
Q 010470          195 DGVVRRSEEGAEFFA-ESTVPSTCKHKINAHEGGCASILFEYNSARLISG-----------GQDKSIKLWDTNTGSLSS-  261 (510)
Q Consensus       195 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-----------~~dg~i~iwd~~~~~~~~-  261 (510)
                      ++.+++|+....... ...+.......+.+|...|.+++++  ++.+++|           +.|+.+++|++.+..... 
T Consensus        42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~  119 (365)
T 4h5i_A           42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE  119 (365)
T ss_dssp             CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred             CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence            445788874332110 0111122334678899999988776  4566665           457789999986543211 


Q ss_pred             --------cccccccceeEEEEecCCCEEEEEe--CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC
Q 010470          262 --------TLYGCLGSVLDLAITHDNRSVIAAS--SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD  331 (510)
Q Consensus       262 --------~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d  331 (510)
                              ....+...+.+++|+|||+++++++  .|++|+|||+.+++.+..+. |...|.+++|+| ++.++++++ +
T Consensus       120 ~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s-~  196 (365)
T 4h5i_A          120 FLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYIT-G  196 (365)
T ss_dssp             EEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEEC-S
T ss_pred             EeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEecc-c
Confidence                    1123455688999999999987665  68999999999999988886 778899999999 889999988 5


Q ss_pred             CcEEEEECCCCeEeeeeee--c-CceeEEEEcCCCCEEEEecCCC----cEEEEECCCCce----eeeecccccccEEEE
Q 010470          332 RTLKVWDLHKGYCVNTIIF--H-SNCNALAFSMDGQTIFSGHIDG----NLRLWDIQTGKL----LSEVAAHSLAAVTSI  400 (510)
Q Consensus       332 g~i~iwd~~~~~~~~~~~~--~-~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~~i~~i  400 (510)
                      +.+.+|+..++..+.....  + ..+.+++|+|++..+++++.++    .+++||+..+..    ...+..+. .+|+++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~V~~~  275 (365)
T 4h5i_A          197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF-KGITSM  275 (365)
T ss_dssp             SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC-SCEEEE
T ss_pred             eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCC-CCeEeE
Confidence            5677777777766544322  2 3489999999999999998777    588899876643    23444554 789999


Q ss_pred             EEcCCCCEEEEEecCCcEEEEEcCCceeeeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470          401 SLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       401 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  472 (510)
                      +|+|+|++|++|+.|+.|+|||+.+++.+..+ .+|...+..    ++|+|||++|++|+.|++|+||++...
T Consensus       276 ~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~----v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          276 DVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE----VTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE----EEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE----EEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999999999999999988875 567666554    999999999999999999999999653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.3e-33  Score=262.14  Aligned_cols=239  Identities=12%  Similarity=0.089  Sum_probs=203.9

Q ss_pred             cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---eeEeecCCCCceEEEEEecCCCC-EEEEEeCCCcEEEE
Q 010470          262 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTGHTDKVCAVDVSKISSR-HVVSAAYDRTLKVW  337 (510)
Q Consensus       262 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~-~l~s~~~dg~i~iw  337 (510)
                      ...+|.+.|++++|+|++.+|++++.||.|++|++.++.   ....+.+|...|.+++|+| ++. +|++++.||.|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEE
Confidence            345899999999999999999999999999999999887   3455568999999999999 788 99999999999999


Q ss_pred             EC-CCCeEeeeee--ecCceeEEEEcCCCCEEEEecCCCcEEEEECCC---------CceeeeecccccccEEEEEEcCC
Q 010470          338 DL-HKGYCVNTII--FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT---------GKLLSEVAAHSLAAVTSISLSRS  405 (510)
Q Consensus       338 d~-~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~i~~i~~~~~  405 (510)
                      |+ .++.......  +...+.+++|+| +..+++++.||.|++||+++         ++++..+. +. ..+.+++|+|+
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~  161 (342)
T 1yfq_A           85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK-NKIFTMDTNSS  161 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC-CCEEEEEECSS
T ss_pred             EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC-CceEEEEecCC
Confidence            99 8776643333  446699999999 99999999999999999987         76666666 33 89999999998


Q ss_pred             CCEEEEEecCCcEEEEEcCC-ceee--eEeecCCCeeecCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCc------cee
Q 010470          406 GNIILTSGRDNLHNLFDIRS-LEVC--GSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKA------DIV  475 (510)
Q Consensus       406 ~~~l~~~~~d~~i~i~d~~~-~~~~--~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~  475 (510)
                      +  +++++.++.|++||+++ +...  .....+..    .+.+++|+| ++++|++++.||.|++|++...      +..
T Consensus       162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY----QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS----CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             c--EEEEeCCCeEEEEECCccccccceeeecCCCC----ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence            7  99999999999999987 5432  22222333    345699999 9999999999999999999887      777


Q ss_pred             ecccccCc---------CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          476 RTLKEHTA---------PVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       476 ~~~~~~~~---------~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..+..|..         +|.+++|+|++++|++++.||.|++||
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            77777755         999999999999999999999999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=8.8e-34  Score=272.25  Aligned_cols=256  Identities=15%  Similarity=0.200  Sum_probs=184.3

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc-----eecccccccceeEEEEec--------CCCEEEEEeCC
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL-----SSTLYGCLGSVLDLAITH--------DNRSVIAASSS  288 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d  288 (510)
                      ..|.+.+....+++++.+|++|+.|++|+|||..++..     +..+.+|.+.|++++|+|        |+++|++++.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            34555566666677788999999999999999988754     456789999999999998        88999999999


Q ss_pred             CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-------------------
Q 010470          289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-------------------  349 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------  349 (510)
                      ++|+|||+.++.....+..|..+|.+++|+|.+..+|++++.||+|++||+.++.......                   
T Consensus       166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            9999999999888888888999999999999555789999999999999998876433221                   


Q ss_pred             -------ecCceeEEEEc-CCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          350 -------FHSNCNALAFS-MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       350 -------~~~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                             ....+.++.|+ |+|..|++++.|+.+++||+..+.....+..+. ..+..+.+.|++..+..          
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~----------  314 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST-MKLGPKNLLPNVQGISL----------  314 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECS----------
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec-CccccEEEccccccccc----------
Confidence                   11346788876 799999999999999999999888777776655 56666666665332211          


Q ss_pred             EcCCceeeeEeecCCCeeecCceeEEEcC--CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEE
Q 010470          422 DIRSLEVCGSLRATGNRVASNWSRSCISP--DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS  499 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  499 (510)
                                   ......     ..++|  ++.++++|+.||.|++||+.++.....+..|..+|.+++|+|||++|++
T Consensus       315 -------------~~~~~~-----~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~  376 (393)
T 4gq1_A          315 -------------FPSLLG-----ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAI  376 (393)
T ss_dssp             -------------SCCSSC-----CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             -------------cCccee-----EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence                         111111     23333  5567888999999999999999998888889999999999999999999


Q ss_pred             eeCCCeE
Q 010470          500 ADKNGVV  506 (510)
Q Consensus       500 ~~~dg~i  506 (510)
                      ++.+|.+
T Consensus       377 as~~Gv~  383 (393)
T 4gq1_A          377 ATEGSVL  383 (393)
T ss_dssp             EESSEEE
T ss_pred             EeCCCeE
Confidence            9988764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.7e-31  Score=252.84  Aligned_cols=252  Identities=18%  Similarity=0.229  Sum_probs=210.6

Q ss_pred             EeCCCCcceecccccccceeEEEEecC---CCEEEEEeCCCeEEEEEcCC-CCee-EeecCCCCceEEEEEecCCCCEEE
Q 010470          252 WDTNTGSLSSTLYGCLGSVLDLAITHD---NRSVIAASSSNNLYVWDVNS-GRVR-HTLTGHTDKVCAVDVSKISSRHVV  326 (510)
Q Consensus       252 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~~l~  326 (510)
                      |+....+.+..+.+|.+.|++++|+|+   |++|++++.||.|++||+.+ +... ..+.+|...|.+++|+| ++.+|+
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~  102 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVF  102 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEE
Confidence            455666777888999999999999999   59999999999999999997 5544 77889999999999999 889999


Q ss_pred             EEeCCCcEEEEECCCCeEeeeeeecCceeEEEE--cCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcC
Q 010470          327 SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAF--SMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSR  404 (510)
Q Consensus       327 s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~  404 (510)
                      +++.||.|++||+.++..+....+...+.+++|  +|++.+|++++.||.|++||+++++.+..+..+  ..+.++.+. 
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~-  179 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--ERCYCADVI-  179 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS--SCEEEEEEE-
T ss_pred             EEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC--CCceEEEec-
Confidence            999999999999999998887777788999999  899999999999999999999999988888876  466666665 


Q ss_pred             CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE----EEEEcCCCeEEEEeCCCc---ceeec
Q 010470          405 SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY----VAAGSADGSVYIWSISKA---DIVRT  477 (510)
Q Consensus       405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~  477 (510)
                       +..+++++.++.+.+|+++............  .......+++.+++..    +++++.||.|++|++...   ..+..
T Consensus       180 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  256 (368)
T 3mmy_A          180 -YPMAVVATAERGLIVYQLENQPSEFRRIESP--LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT  256 (368)
T ss_dssp             -TTEEEEEEGGGCEEEEECSSSCEEEEECCCS--CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred             -CCeeEEEeCCCcEEEEEeccccchhhhcccc--ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence             4588899999999999998765433322211  1122233555554443    999999999999999887   55667


Q ss_pred             ccccCc------------CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          478 LKEHTA------------PVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       478 ~~~~~~------------~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +..|..            +|++++|+|++++|++++.||.|++||
T Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  301 (368)
T 3mmy_A          257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD  301 (368)
T ss_dssp             EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence            777765            799999999999999999999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.3e-31  Score=253.46  Aligned_cols=244  Identities=15%  Similarity=0.162  Sum_probs=186.1

Q ss_pred             EEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC
Q 010470          251 LWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY  330 (510)
Q Consensus       251 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~  330 (510)
                      ||++.+..++.....|...|.+++|+|||++|++|+.++ +++|++.+++.......  ..+..+.+.+..+..+++++.
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV   79 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence            566777777777889999999999999999999888775 78999988766555432  247778888833344467888


Q ss_pred             CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEE
Q 010470          331 DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNII  409 (510)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l  409 (510)
                      |+.|++||+.+++++..+..+..+.++.++++.  ++++ .++.|++||+.++ +.+..+..    +...+++++  .++
T Consensus        80 d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~l  150 (355)
T 3vu4_A           80 KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLL  150 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEE
T ss_pred             ccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEE
Confidence            899999999999999999888889999998764  3433 3689999999988 66665554    344456666  566


Q ss_pred             EE--EecCCcEEEEEcCCce---------------e-eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe-EEEEeCC
Q 010470          410 LT--SGRDNLHNLFDIRSLE---------------V-CGSLRATGNRVASNWSRSCISPDESYVAAGSADGS-VYIWSIS  470 (510)
Q Consensus       410 ~~--~~~d~~i~i~d~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~-i~iwd~~  470 (510)
                      ++  |+.+|.|++||+.++.               + ...+.+|...+.    +++|+|+|++|++|+.||+ |++||+.
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~----~~~~s~~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK----MVRLNRKSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEE----EEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE----EEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            65  6889999999999765               1 566666666554    4999999999999999998 9999999


Q ss_pred             Ccceeeccc-c-cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          471 KADIVRTLK-E-HTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       471 ~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +++.+..+. + |..+|.+++|+|+|++|++++.||.|++||
T Consensus       227 ~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          227 DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence            999999998 5 999999999999999999999999999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=3.7e-31  Score=238.61  Aligned_cols=283  Identities=16%  Similarity=0.243  Sum_probs=201.1

Q ss_pred             ceeecccccc----ceEEEEEecCCC---EEEEeeCCCeEEEEeCCCC---cceecccccccceeEEEEecCCCEEEEEe
Q 010470          217 CKHKINAHEG----GCASILFEYNSA---RLISGGQDKSIKLWDTNTG---SLSSTLYGCLGSVLDLAITHDNRSVIAAS  286 (510)
Q Consensus       217 ~~~~~~~h~~----~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  286 (510)
                      .+.+++...+    .+.++-|-..|-   .+++++ ...|++|+..++   +.+.++.+|..+|..+.+.||...|++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  105 (356)
T 2w18_A           27 LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA  105 (356)
T ss_dssp             EEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE
T ss_pred             eeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee
Confidence            3444544443    356666655443   566666 568999999998   78889999999999999999765544433


Q ss_pred             CC----CeEEEEEcCCC----CeeEeecCCCCceEEEEEecCCCCEEEEEe--CCCcEEEEEC-CCCeEeeeeeecC-ce
Q 010470          287 SS----NNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKISSRHVVSAA--YDRTLKVWDL-HKGYCVNTIIFHS-NC  354 (510)
Q Consensus       287 ~d----~~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~--~dg~i~iwd~-~~~~~~~~~~~~~-~i  354 (510)
                      -.    +.|+..-+...    .......+|...|.++   + +++++.+++  .|+.|++|++ .+|+.+..+..++ .+
T Consensus       106 ~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v  181 (356)
T 2w18_A          106 LGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEE  181 (356)
T ss_dssp             ECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSS
T ss_pred             eccccccceEEEEECCCccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCce
Confidence            21    12221111111    1122223444445443   3 555555543  5999999999 4577777776664 48


Q ss_pred             eEEEEcC---CCCEEEEecCCCcEEEEECCCCceeeeecccc--cccEEEEEEcCCCCEE------------EEEecCCc
Q 010470          355 NALAFSM---DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--LAAVTSISLSRSGNII------------LTSGRDNL  417 (510)
Q Consensus       355 ~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l------------~~~~~d~~  417 (510)
                      ..++|+|   ++..|++|+.|++|++||+.+++.+..+..++  ...+.+++|+|+|.++            ++|+.|++
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            8899999   78999999999999999999999999997654  2467788999999886            55778999


Q ss_pred             EEEEEcCCceeeeEee-----cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEE-EEEEe
Q 010470          418 HNLFDIRSLEVCGSLR-----ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVL-SCSWS  491 (510)
Q Consensus       418 i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~  491 (510)
                      |++||..+++.+..+.     ++...    +  +..+.++.++++|+.||+|+|||+.+++.+.++.+|...+. .++|+
T Consensus       262 IklWd~~tgk~l~v~~~~~p~Gh~~~----~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS  335 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPGQAGR----F--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS  335 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTCCCC----E--EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred             EEEEECCCCEEEEEEEeeccCCCcce----e--EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence            9999999998876553     22211    1  33344588999999999999999999999999999887655 58999


Q ss_pred             CCCCcEEEeeCCCeEEEcC
Q 010470          492 GLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       492 ~~~~~l~s~~~dg~i~iwd  510 (510)
                      |||++|++|+.|++|+|||
T Consensus       336 PDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          336 GTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             SSSSEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEEECCCcEEEec
Confidence            9999999999999999996

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.4e-31  Score=252.83  Aligned_cols=282  Identities=15%  Similarity=0.171  Sum_probs=206.7

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec--CCCEEEEeeCCCeEEEEeCCCC-------
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY--NSARLISGGQDKSIKLWDTNTG-------  257 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~-------  257 (510)
                      ..+++++.||.+++|+....     .........+.+|.+.|++++|+|  ++.+|++|+.||.|++||+.++       
T Consensus        24 ~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~   98 (351)
T 3f3f_A           24 RHVATCSSDQHIKVFKLDKD-----TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR   98 (351)
T ss_dssp             SEEEEEETTSEEEEEEECSS-----SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC
T ss_pred             CEEEEeeCCCeEEEEECCCC-----CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc
Confidence            34678889999999985431     122346778889999999999999  6999999999999999999877       


Q ss_pred             --cceecccccccceeEEEEecC--CCEEEEEeCCCeEEEEEcCCCCeeEeec-------------CCCCceEEEEEecC
Q 010470          258 --SLSSTLYGCLGSVLDLAITHD--NRSVIAASSSNNLYVWDVNSGRVRHTLT-------------GHTDKVCAVDVSKI  320 (510)
Q Consensus       258 --~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~v~~i~~~~~  320 (510)
                        +.+..+.+|...|.+++|+|+  +.++++++.||.|++||+.+++.+..+.             .|...+.++.|+|.
T Consensus        99 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  178 (351)
T 3f3f_A           99 RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS  178 (351)
T ss_dssp             SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred             CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC
Confidence              456778899999999999999  9999999999999999998877554432             67889999999994


Q ss_pred             --CCCEEEEEeCCCcEEEEECCCCeE--eeeeeec-CceeEEEEcCCC----CEEEEecCCCcEEEEECCCCceeeeecc
Q 010470          321 --SSRHVVSAAYDRTLKVWDLHKGYC--VNTIIFH-SNCNALAFSMDG----QTIFSGHIDGNLRLWDIQTGKLLSEVAA  391 (510)
Q Consensus       321 --~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~i~~i~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~  391 (510)
                        ++..+++++.++.+.+|+...+..  +..+..+ ..|.+++|+|++    .+|++|+.||.|++||++.+........
T Consensus       179 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  258 (351)
T 3f3f_A          179 RFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE  258 (351)
T ss_dssp             SSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------
T ss_pred             CCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC
Confidence              388999999999999998887765  4444444 569999999998    8999999999999999987655444333


Q ss_pred             cccccEEEEEEcCCCCEEEEE----ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470          392 HSLAAVTSISLSRSGNIILTS----GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW  467 (510)
Q Consensus       392 ~~~~~i~~i~~~~~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw  467 (510)
                      .. ........++....+..+    .....+.+|+......+..+..|...+..    ++|+|++++|++|+.||.|++|
T Consensus       259 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~----~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          259 SL-TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS----VSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             ---------------------------------CCSEEEEEEEEECTTSSCEEE----EEECSSSCCEEEEETTSCEEEE
T ss_pred             cc-cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE----EEEcCCCCEEEEecCCCcEEEE
Confidence            22 333334444444443333    33445666666677777777777666554    9999999999999999999999


Q ss_pred             eCCCcceeecc
Q 010470          468 SISKADIVRTL  478 (510)
Q Consensus       468 d~~~~~~~~~~  478 (510)
                      ++.+++.+..+
T Consensus       334 ~~~~~~~~~~~  344 (351)
T 3f3f_A          334 KATYSNEFKCM  344 (351)
T ss_dssp             EECTTSCEEEE
T ss_pred             ecCcCcchhhe
Confidence            99987655443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-31  Score=257.96  Aligned_cols=236  Identities=15%  Similarity=0.163  Sum_probs=198.4

Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC---eeEeecC------------------------------------
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR---VRHTLTG------------------------------------  307 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~------------------------------------  307 (510)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578899999999965555 57899999999998   6555543                                    


Q ss_pred             ------------------CCCceEEEEEecCCCCEE-EEEeCCCcEEEEECC--CCeEeeeeee---cCceeEEEEcCCC
Q 010470          308 ------------------HTDKVCAVDVSKISSRHV-VSAAYDRTLKVWDLH--KGYCVNTIIF---HSNCNALAFSMDG  363 (510)
Q Consensus       308 ------------------~~~~v~~i~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~---~~~i~~i~~~~~~  363 (510)
                                        |.+.|.+++|+| ++.+| ++++.||.|++||+.  ++..+..+..   ...+.+++|+|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             -----------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence                              333799999999 67775 899999999999999  8888777753   3569999999999


Q ss_pred             CEEEEecCCCcEEEEECCCCceee----eecccccccEEEEEEcCC---CCEEEEEecCCcEEEEEcCCceeeeEe-ecC
Q 010470          364 QTIFSGHIDGNLRLWDIQTGKLLS----EVAAHSLAAVTSISLSRS---GNIILTSGRDNLHNLFDIRSLEVCGSL-RAT  435 (510)
Q Consensus       364 ~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~  435 (510)
                      .+|++|+.+|.|++|++.++....    .+..+. ..|.+++|+|+   +.+|++++.|+.|++||++++..+..+ .++
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS-SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeeccc-CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence            999999999999999998876543    555555 89999999999   999999999999999999988877663 355


Q ss_pred             CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-------------------------cCcCEEEEEE
Q 010470          436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-------------------------HTAPVLSCSW  490 (510)
Q Consensus       436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------~~~~v~~~~~  490 (510)
                      ...+    .+++|+ ++++|++|+.||.|++||+.+++.+..+..                         +...|.+++|
T Consensus       241 ~~~v----~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          241 KHFV----SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             SSCE----EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             CCce----EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            5444    458999 999999999999999999999988777652                         2357899999


Q ss_pred             eCCCCcEEEee-CCCeEEEcC
Q 010470          491 SGLGKPLASAD-KNGVVCVWT  510 (510)
Q Consensus       491 ~~~~~~l~s~~-~dg~i~iwd  510 (510)
                      +|++++|++++ .|+.|++|+
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEE
T ss_pred             eCCCCEEEEEECCCCeEEEEE
Confidence            99999999988 899999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-32  Score=254.52  Aligned_cols=226  Identities=9%  Similarity=0.078  Sum_probs=186.0

Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC---------CCeE
Q 010470          274 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH---------KGYC  344 (510)
Q Consensus       274 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~  344 (510)
                      .+.+++.++++|+.||.|++||+.+++.+..+.  ...|.++.++| .   +++++.|++|++|+..         ++..
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            345678899999999999999999999888776  46677888888 3   9999999999999765         4444


Q ss_pred             eeeeeec--CceeEEEEcC--CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470          345 VNTIIFH--SNCNALAFSM--DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL  420 (510)
Q Consensus       345 ~~~~~~~--~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i  420 (510)
                      +..+...  ..+.+++|+|  +++++++|+.||.|++||+++++.......++...+.+++|+|+|.+|++|+.||.|++
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            5454433  4599999999  99999999999999999999999877665555468999999999999999999999999


Q ss_pred             EEcCCceee-eEeec-CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc---cCcCEE--EEEEeCC
Q 010470          421 FDIRSLEVC-GSLRA-TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE---HTAPVL--SCSWSGL  493 (510)
Q Consensus       421 ~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~~~~~~~  493 (510)
                      ||+++++.. ..+.. |...+    .+++|+|+|.+|++++ ++.|++||+.+++.+..+..   |...+.  +++|+|+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v----~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKI----KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCE----EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             EECCCCCCCccEEeccCCCCE----EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            999998876 66666 55544    4599999999999999 55999999999887666554   444444  6999999


Q ss_pred             CCcEEEeeC-CCeEEEcC
Q 010470          494 GKPLASADK-NGVVCVWT  510 (510)
Q Consensus       494 ~~~l~s~~~-dg~i~iwd  510 (510)
                      |++|++++. |+.|++|+
T Consensus       272 g~~l~~~s~~d~~i~v~~  289 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYK  289 (343)
T ss_dssp             SSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEecCCCCcEEEEE
Confidence            999999988 99999994

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.98  E-value=6.3e-30  Score=254.20  Aligned_cols=304  Identities=12%  Similarity=0.098  Sum_probs=237.4

Q ss_pred             hhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeC--CCCcceeccccccc
Q 010470          191 KQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDT--NTGSLSSTLYGCLG  268 (510)
Q Consensus       191 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~  268 (510)
                      ....++.+.+|+...         .++..++..+.. +.+++|+|+|++|++++.|+.|.+||+  .+++.+.++.. ..
T Consensus       154 s~~~d~~V~v~D~~t---------~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~  222 (543)
T 1nir_A          154 TLRDAGQIALVDGDS---------KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GI  222 (543)
T ss_dssp             EEGGGTEEEEEETTT---------CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CS
T ss_pred             EEcCCCeEEEEECCC---------ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CC
Confidence            344556666665332         345666663333 889999999999999999999999999  78888887764 55


Q ss_pred             ceeEEEEec----CCCEEEEEe-CCCeEEEEEcCCCCeeEeecCC----------C-CceEEEEEecCCCCEEEEEeCCC
Q 010470          269 SVLDLAITH----DNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGH----------T-DKVCAVDVSKISSRHVVSAAYDR  332 (510)
Q Consensus       269 ~v~~~~~~~----~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~----------~-~~v~~i~~~~~~~~~l~s~~~dg  332 (510)
                      .+..++|+|    +|+++++++ .++.|.+||..+++++..+..+          . ..+.++.++|.+..++++...++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence            679999999    999999998 4899999999999988887642          2 37889999996667788888899


Q ss_pred             cEEEEECCCCeEee--eeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCCceeeeeccc---ccccEEEEEEcCC-
Q 010470          333 TLKVWDLHKGYCVN--TIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGKLLSEVAAH---SLAAVTSISLSRS-  405 (510)
Q Consensus       333 ~i~iwd~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~i~~~~~-  405 (510)
                      .|.+||+.++..+.  .+.....+.++.|+|+|++++++ ..+++|.+||+.+++.+..+...   +.+....+ ++|+ 
T Consensus       303 ~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~  381 (543)
T 1nir_A          303 KVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY  381 (543)
T ss_dssp             EEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT
T ss_pred             eEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC
Confidence            99999998765444  44444558899999999987654 56889999999999988877642   11222233 4677 


Q ss_pred             CCEEEEEe-cCCcEEEEEcCC-------ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc-------CCCeEEEEeCC
Q 010470          406 GNIILTSG-RDNLHNLFDIRS-------LEVCGSLRATGNRVASNWSRSCISPDESYVAAGS-------ADGSVYIWSIS  470 (510)
Q Consensus       406 ~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~i~iwd~~  470 (510)
                      +.+++++. .|++|.+||+.+       ++.+..+..+......    +.++|+|++|++++       .+++|.|||+.
T Consensus       382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~----v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF----IKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  457 (543)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCC----EECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceE----EEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence            55566665 579999999988       8899999887755433    88999999999987       26799999999


Q ss_pred             Cccee-ecc--------cccCcCEEEEEEeCCCCcEEEee-----CCCeEEEcC
Q 010470          471 KADIV-RTL--------KEHTAPVLSCSWSGLGKPLASAD-----KNGVVCVWT  510 (510)
Q Consensus       471 ~~~~~-~~~--------~~~~~~v~~~~~~~~~~~l~s~~-----~dg~i~iwd  510 (510)
                      +++.. ..+        ..+...+..+.|+|+|+.|+++.     .|+.|.|||
T Consensus       458 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          458 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             CTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence            98876 333        34567899999999999887652     479999997

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=1.2e-29  Score=247.31  Aligned_cols=243  Identities=16%  Similarity=0.119  Sum_probs=210.7

Q ss_pred             eccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 010470          220 KINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNS  298 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~  298 (510)
                      .+.+|.+.|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++++++++ .++.|++||+.+
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  243 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT  243 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence            4568999999999999999999999999999999999999888888999999999999999886555 799999999999


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEe--------CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE-EEe
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAA--------YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI-FSG  369 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~  369 (510)
                      ++.+..+..+ ..+.+++|+| ++..+++++        .||.|++||+.+++.+..+.....+.+++|+|+++.+ +++
T Consensus       244 ~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  321 (433)
T 3bws_A          244 KLEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSD  321 (433)
T ss_dssp             TEEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEE
T ss_pred             CcEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEe
Confidence            9888887754 5689999999 777888877        4889999999999988887766788999999999755 566


Q ss_pred             cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec---------------CCcEEEEEcCCceeeeEeec
Q 010470          370 HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR---------------DNLHNLFDIRSLEVCGSLRA  434 (510)
Q Consensus       370 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---------------d~~i~i~d~~~~~~~~~~~~  434 (510)
                      +.++.|++||+.+++....+...  ..+.+++|+|+|+++++++.               ||.|++||+.+++....+..
T Consensus       322 ~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~  399 (433)
T 3bws_A          322 MCCSKIEVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA  399 (433)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred             cCCCEEEEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence            89999999999999888777643  77999999999999888876               57999999999998888766


Q ss_pred             CCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCCC
Q 010470          435 TGNRVASNWSRSCISPDESYVAAGSA-DGSVYIWSISK  471 (510)
Q Consensus       435 ~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~  471 (510)
                      ...     +..++|+|+|++|++++. |+.|++|++..
T Consensus       400 ~~~-----~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          400 GNQ-----PTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SSS-----EEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCC-----CceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            332     345899999999988764 99999999763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=6.1e-29  Score=239.89  Aligned_cols=276  Identities=14%  Similarity=0.128  Sum_probs=214.5

Q ss_pred             cccceEEEEEecCCC-EEEEee----CCC----eEEEEeC--CCCcce--ecccccccceeEEEEec-------------
Q 010470          224 HEGGCASILFEYNSA-RLISGG----QDK----SIKLWDT--NTGSLS--STLYGCLGSVLDLAITH-------------  277 (510)
Q Consensus       224 h~~~v~~~~~s~~~~-~l~s~~----~dg----~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~-------------  277 (510)
                      +.+.|....|++.|. ++++|+    .||    .|++||+  .+++.+  ..+.+|...+..+++++             
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            335678888888775 555776    467    8999999  888876  45778888888777765             


Q ss_pred             -CCCEEEEEeCC------CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC---cEEEEECCCCeEeee
Q 010470          278 -DNRSVIAASSS------NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR---TLKVWDLHKGYCVNT  347 (510)
Q Consensus       278 -~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~  347 (510)
                       .+..++.++.+      +.|++||+. +.....+.+|...+.+++|+| ++..|++++.++   .|++||+.+++....
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l  218 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQV  218 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence             25666666654      799999987 455677788999999999999 888999998875   999999999987655


Q ss_pred             eeecCceeEEEEcCCCCEEE-EecCCCc--EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec-CC--cEEEE
Q 010470          348 IIFHSNCNALAFSMDGQTIF-SGHIDGN--LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DN--LHNLF  421 (510)
Q Consensus       348 ~~~~~~i~~i~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~i~  421 (510)
                      ......+.+++|+|+|+.|+ +++.+|.  |++||+.+++. ..+..+. ..+.++.|+|+|++|++++. ++  .|++|
T Consensus       219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~~spdg~~l~~~s~~~g~~~i~~~  296 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR-SNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  296 (415)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC-CcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence            54556789999999999887 6666554  99999988875 4455554 78999999999999988876 44  67788


Q ss_pred             EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEE
Q 010470          422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA  498 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  498 (510)
                      |+.+++.. .+..+...    +..++|+|+|++|++++.+   +.|++||+.+++.. .+..|. .+.+++|+|+|++|+
T Consensus       297 d~~~~~~~-~l~~~~~~----~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~  369 (415)
T 2hqs_A          297 NINGGAPQ-RITWEGSQ----NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI  369 (415)
T ss_dssp             ETTSSCCE-ECCCSSSE----EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred             ECCCCCEE-EEecCCCc----ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence            98877643 23333333    3348999999999988764   58999999988764 454454 899999999999999


Q ss_pred             EeeCCC---eEEEcC
Q 010470          499 SADKNG---VVCVWT  510 (510)
Q Consensus       499 s~~~dg---~i~iwd  510 (510)
                      +++.++   .|++||
T Consensus       370 ~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVS  384 (415)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEcCCCccEEEEEE
Confidence            888776   788875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=2.3e-28  Score=235.86  Aligned_cols=278  Identities=14%  Similarity=0.101  Sum_probs=217.0

Q ss_pred             eEEeccc--ccccccccCCCccce--eeccccccceEEEEEec--------------CCCEEEEeeCC------CeEEEE
Q 010470          197 VVRRSEE--GAEFFAESTVPSTCK--HKINAHEGGCASILFEY--------------NSARLISGGQD------KSIKLW  252 (510)
Q Consensus       197 ~~~~~~~--~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~s~--------------~~~~l~s~~~d------g~i~iw  252 (510)
                      .+++|+.  ..         .+++  ..+.+|...+..+++++              .+..++.++.+      +.|++|
T Consensus        94 ~i~lwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~  164 (415)
T 2hqs_A           94 AYQLVDTGGAP---------GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVS  164 (415)
T ss_dssp             EEEEEECSSST---------TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEE
T ss_pred             EEEEEeCCCCC---------CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEE
Confidence            7888875  32         1233  45788888888887775              15666666654      799999


Q ss_pred             eCCCCcceecccccccceeEEEEecCCCEEEEEeCCC---eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEE-EE
Q 010470          253 DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN---NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV-SA  328 (510)
Q Consensus       253 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~  328 (510)
                      |+. +.....+.+|...+.+++|+|+|++|++++.++   .|++||+.+++.. .+..|...+.+++|+| ++..|+ ++
T Consensus       165 d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp-dg~~la~~~  241 (415)
T 2hqs_A          165 DYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DGSKLAFAL  241 (415)
T ss_dssp             ETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             cCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC-CCCEEEEEE
Confidence            997 455677788999999999999999999999875   9999999988875 4667888999999999 677666 66


Q ss_pred             eCCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeecccccccEEEEEEc
Q 010470          329 AYDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-DG--NLRLWDIQTGKLLSEVAAHSLAAVTSISLS  403 (510)
Q Consensus       329 ~~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~  403 (510)
                      +.++.  |++||+.++...........+.+++|+|+|+.|++++. +|  .|++||+.+++.. .+..+. ..+.+++|+
T Consensus       242 ~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~~s  319 (415)
T 2hqs_A          242 SKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG-SQNQDADVS  319 (415)
T ss_dssp             CTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS-SEEEEEEEC
T ss_pred             ecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCC-CcccCeEEC
Confidence            66654  99999998876544444456899999999999887775 44  6888899877643 343333 678899999


Q ss_pred             CCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC---eEEEEeCCCcceeec
Q 010470          404 RSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG---SVYIWSISKADIVRT  477 (510)
Q Consensus       404 ~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~  477 (510)
                      |+|++|++++.+   ..|.+||+.+++.. .+..+.     .+..++|+|+|++|++++.++   .|++||+. +.....
T Consensus       320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-----~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~  392 (415)
T 2hqs_A          320 SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-----LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKAR  392 (415)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-----SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEE
T ss_pred             CCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-----CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEE
Confidence            999999988765   58999999988763 333322     344589999999999888776   79999986 556777


Q ss_pred             ccccCcCEEEEEEeCCCC
Q 010470          478 LKEHTAPVLSCSWSGLGK  495 (510)
Q Consensus       478 ~~~~~~~v~~~~~~~~~~  495 (510)
                      +..|.+.|.+++|+|.-.
T Consensus       393 l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          393 LPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CCCSSSEEEEEEECCCCC
T ss_pred             eeCCCCCCcCCccccccc
Confidence            888999999999999754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=3.1e-28  Score=242.04  Aligned_cols=274  Identities=12%  Similarity=0.091  Sum_probs=221.1

Q ss_pred             EEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc--CCCCeeEeecCCC
Q 010470          232 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV--NSGRVRHTLTGHT  309 (510)
Q Consensus       232 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~  309 (510)
                      +|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|+|+++++++.|+.|.+||+  .+++.+..+. +.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence            3789999999999999999999999999888874333 889999999999999999999999999  7888888887 45


Q ss_pred             CceEEEEEecC---CCCEEEEEe-CCCcEEEEECCCCeEeeeeeec------------CceeEEEEcCCCCE-EEEecCC
Q 010470          310 DKVCAVDVSKI---SSRHVVSAA-YDRTLKVWDLHKGYCVNTIIFH------------SNCNALAFSMDGQT-IFSGHID  372 (510)
Q Consensus       310 ~~v~~i~~~~~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~------------~~i~~i~~~~~~~~-l~~~~~d  372 (510)
                      ..+..++|+|.   +++++++++ .+++|.+||..+++++..+...            ..+.++.++|++.. +++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            66799999981   456666666 5899999999999988887642            25788999997765 5567788


Q ss_pred             CcEEEEECCCCceee--eecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470          373 GNLRLWDIQTGKLLS--EVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       373 g~i~i~d~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                      |.|.+||..+++.+.  .+.  ....+.++.|+|+|+++++++ .++.|.+||+.+++....+.....+...... ..++
T Consensus       302 g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~-~~~~  378 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA-NFVH  378 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE-EEEE
T ss_pred             CeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc-ccCC
Confidence            999999998876544  333  225688899999999877654 5889999999999998888754333322111 1246


Q ss_pred             CC-CCEEEEEc-CCCeEEEEeCCC-------cceeecccccCcCEEEEEEeCCCCcEEEee-------CCCeEEEcC
Q 010470          450 PD-ESYVAAGS-ADGSVYIWSISK-------ADIVRTLKEHTAPVLSCSWSGLGKPLASAD-------KNGVVCVWT  510 (510)
Q Consensus       450 ~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~dg~i~iwd  510 (510)
                      |+ |.+++++. .|++|.+||+.+       ++.+.++..|.+.+..++|+|+|++|++++       .+++|.+||
T Consensus       379 p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          379 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence            77 66667765 589999999988       889999999988889999999999999987       267999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.1e-28  Score=220.76  Aligned_cols=201  Identities=12%  Similarity=0.190  Sum_probs=157.6

Q ss_pred             cccccceEEEEEecC----CCEEEEeeC--------------------CCeEEEEeC-CCCcceecccccccceeEEEEe
Q 010470          222 NAHEGGCASILFEYN----SARLISGGQ--------------------DKSIKLWDT-NTGSLSSTLYGCLGSVLDLAIT  276 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~----~~~l~s~~~--------------------dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~  276 (510)
                      +-|.+.|.+++|+|+    +..+++++.                    |+.|++|++ .+|+.+..+.+|...+..++|+
T Consensus       108 ~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs  187 (356)
T 2w18_A          108 NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA  187 (356)
T ss_dssp             SSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred             cccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence            344557888888888    777877653                    888999998 5577778888888899999999


Q ss_pred             c---CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC---CceEEEEEecCCCCEE------------EEEeCCCcEEEEE
Q 010470          277 H---DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT---DKVCAVDVSKISSRHV------------VSAAYDRTLKVWD  338 (510)
Q Consensus       277 ~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l------------~s~~~dg~i~iwd  338 (510)
                      |   ++.+|++++.|++|+|||+.++++++++.+|.   ..+.+++|+| ++.++            ++|+.|++|++||
T Consensus       188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEE
T ss_pred             ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence            8   77999999999999999999999999998654   3677889999 67665            5688899999999


Q ss_pred             CCCCeEeeeeee----cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec
Q 010470          339 LHKGYCVNTIIF----HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR  414 (510)
Q Consensus       339 ~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  414 (510)
                      ..+++.+..+..    ......+..+.++..+++|+.||+|+|||+.+++.+..+..|....+.+++|+|+|++|++|+.
T Consensus       267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          267 PKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             TTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             CCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            999998776531    1111123333347889999999999999999999999998876445557999999999999999


Q ss_pred             CCcEEEEEc
Q 010470          415 DNLHNLFDI  423 (510)
Q Consensus       415 d~~i~i~d~  423 (510)
                      |++|+|||+
T Consensus       347 D~TIklWd~  355 (356)
T 2w18_A          347 DGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEecC
Confidence            999999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=4.4e-29  Score=239.57  Aligned_cols=232  Identities=12%  Similarity=0.062  Sum_probs=177.5

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEec--------CCCEEEEeeCCCeEEEEeCCCCc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEY--------NSARLISGGQDKSIKLWDTNTGS  258 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------~~~~l~s~~~dg~i~iwd~~~~~  258 (510)
                      ..+++++.|+.+++|+.....    .........+.||.+.|++++|+|        ||++||+|+.|++|+|||+.++.
T Consensus       102 ~~las~~~d~~v~lw~~~~~~----~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNET----IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTE----EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CEEEEEeCCCcEEEEECCCCc----cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            346788899999999854321    111234567899999999999998        88999999999999999999888


Q ss_pred             ceecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCeeEe-------------------------ecCCCCce
Q 010470          259 LSSTLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHT-------------------------LTGHTDKV  312 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~-------------------------~~~~~~~v  312 (510)
                      ....+.+|...|.+++|+|++. +|++++.||.|++||+.+++....                         ..+|...+
T Consensus       178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v  257 (393)
T 4gq1_A          178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL  257 (393)
T ss_dssp             EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred             eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence            8888889999999999999875 799999999999999987753322                         24577889


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-------------------CceeEEEEcC--CCCEEEEecC
Q 010470          313 CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-------------------SNCNALAFSM--DGQTIFSGHI  371 (510)
Q Consensus       313 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~i~~i~~~~--~~~~l~~~~~  371 (510)
                      .++.|++.++..+++++.|+.+++||+..+.....+..+                   .......++|  ++.++++|+.
T Consensus       258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~  337 (393)
T 4gq1_A          258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ  337 (393)
T ss_dssp             SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred             eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence            999998668999999999999999999877654443322                   1122333444  4446778899


Q ss_pred             CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      ||.|++||+.++.....+..+. .+|.+++|+|+|++|++++.+| +.+|.+.
T Consensus       338 Dg~V~lwd~~~~~~~~~~~~~~-~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          338 HGLIQLINTYEKDSNSIPIQLG-MPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             TTEEEEEETTCTTCCEEEEECS-SCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CCEEEEEECCCCcEEEEecCCC-CcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            9999999999998888777776 7999999999999999998766 5566554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=5.8e-27  Score=219.74  Aligned_cols=272  Identities=15%  Similarity=0.180  Sum_probs=205.1

Q ss_pred             EEEecCCCE-EEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC-CCeEEEEEcCCCCe-eEeecC
Q 010470          231 ILFEYNSAR-LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSGRV-RHTLTG  307 (510)
Q Consensus       231 ~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~-~~~~~~  307 (510)
                      ..|++++.+ +++++.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            345665555 6778889999999999999887777666667 9999999998777775 88999999999987 777776


Q ss_pred             CCCceEEEEEecCCCCEEEEEeCCC---cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE-ecCCCc-EEEEECCC
Q 010470          308 HTDKVCAVDVSKISSRHVVSAAYDR---TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS-GHIDGN-LRLWDIQT  382 (510)
Q Consensus       308 ~~~~v~~i~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~-i~i~d~~~  382 (510)
                      +..+..+++|+| ++++++++..++   .|.+||+.+++.+..+..+..+.+++|+|+|+++++ +..++. |.+|++..
T Consensus        82 ~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            766666699999 788888655553   899999999999988888788899999999986554 455688 99999875


Q ss_pred             Cceee----eecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCcee---eeEeecCCCeeecCceeEEEcCCCCE
Q 010470          383 GKLLS----EVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEV---CGSLRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       383 ~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      ...+.    ..... ...+..++|+|+|+++++++ .++.|.+||+.+++.   +..+.....     ...++|+|+|++
T Consensus       161 ~g~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~spdg~~  234 (331)
T 3u4y_A          161 DGVLFDTGQEFISG-GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL-----PGTIVVSRDGST  234 (331)
T ss_dssp             TCCEEEEEEEEECS-SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC-----CCCEEECTTSSE
T ss_pred             CCcEeecCCccccC-CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC-----CceEEECCCCCE
Confidence            43321    11122 25689999999999665554 688999999998887   666654322     234899999997


Q ss_pred             EEEEc-CCCeEEEEeCCCcce--eeccccc----C---cCEEEEEEeCCCCcEEEe-eCCCeEEEcC
Q 010470          455 VAAGS-ADGSVYIWSISKADI--VRTLKEH----T---APVLSCSWSGLGKPLASA-DKNGVVCVWT  510 (510)
Q Consensus       455 l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~---~~v~~~~~~~~~~~l~s~-~~dg~i~iwd  510 (510)
                      +++++ .++.|.+||+.+++.  +..+..+    .   .....++|+|+|++|+++ ..++.|.+||
T Consensus       235 l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          235 VYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             EEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            76654 578899999998876  3322211    2   223568999999987654 4567999996

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=9e-28  Score=250.42  Aligned_cols=281  Identities=13%  Similarity=0.047  Sum_probs=219.3

Q ss_pred             ccceEEEEEecCCCEEEEeeC-CC-----eEEEEeCCCCcceecccccc------------------------cceeEEE
Q 010470          225 EGGCASILFEYNSARLISGGQ-DK-----SIKLWDTNTGSLSSTLYGCL------------------------GSVLDLA  274 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~------------------------~~v~~~~  274 (510)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....+..+.                        ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            446999999999999999998 88     89999999988765554443                        2388999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC
Q 010470          275 ITHDNRSVIAASSSNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS  352 (510)
Q Consensus       275 ~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  352 (510)
                      |+|||++|++++. +.|++||+.++.  ....+..|...+.+++|+| +++.|++++ ++.|++||+.++........+.
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence            9999999999987 899999999873  4455677888999999999 888888887 5699999999887765544332


Q ss_pred             c-----------------eeEEEEcCCCCEEEEecCCC---------------------------------cEEEEECCC
Q 010470          353 N-----------------CNALAFSMDGQTIFSGHIDG---------------------------------NLRLWDIQT  382 (510)
Q Consensus       353 ~-----------------i~~i~~~~~~~~l~~~~~dg---------------------------------~i~i~d~~~  382 (510)
                      .                 +.+++|+|||++|++++.|+                                 .|++||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            2                 47899999999999887665                                 789999988


Q ss_pred             -Cceeeeecc-cccccEEEEEEcCCCCEEEEEec-----CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470          383 -GKLLSEVAA-HSLAAVTSISLSRSGNIILTSGR-----DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       383 -~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  455 (510)
                       ++....... .+...+.+++| |||++|++++.     +..|.+||+.+++....+..+.......+..++|+|||+++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence             775544322 23368999999 99999987764     46899999999887776655443211122347899999999


Q ss_pred             EEEcCCCeEEEEeCC-CcceeecccccCcCEEEE-EEeCCCCcEEE-eeCCC--eEEEcC
Q 010470          456 AAGSADGSVYIWSIS-KADIVRTLKEHTAPVLSC-SWSGLGKPLAS-ADKNG--VVCVWT  510 (510)
Q Consensus       456 ~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s-~~~dg--~i~iwd  510 (510)
                      ++++.||.+.||.+. ++. ...+..|...|..+ .|+|+|+.|+. ++.++  .+++|+
T Consensus       352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            999999987777665 344 77777788888887 59999997754 44455  788884

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=2.5e-26  Score=217.40  Aligned_cols=271  Identities=15%  Similarity=0.134  Sum_probs=218.6

Q ss_pred             cccceEEEEEecCCCEEEEeeC-------CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEE
Q 010470          224 HEGGCASILFEYNSARLISGGQ-------DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWD  295 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd  295 (510)
                      ....+..++|+|+|+++++++.       ++.|.+||..+++....+.. ...+..++|+|+++++++++ .++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3456889999999999888774       56899999999988777654 34578899999999766655 578999999


Q ss_pred             cCCCCeeEeecCCCCc---------eEEEEEecCCCCEEEEEe--CCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCC
Q 010470          296 VNSGRVRHTLTGHTDK---------VCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDG  363 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~  363 (510)
                      +.+++.+..+..+...         +.++.|+| +++.+++++  .++.|.+||+.+++.+..+. ....+.+++|+|+|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            9999988887754422         78899999 666666554  47899999999999988887 44558999999999


Q ss_pred             CEEEEecCCCcEEEEECCCCceeeeeccc---ccccEEEEEEcCCCCEEEEEecC-CcEEEEEcCCceeeeEeecCCCee
Q 010470          364 QTIFSGHIDGNLRLWDIQTGKLLSEVAAH---SLAAVTSISLSRSGNIILTSGRD-NLHNLFDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       364 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~  439 (510)
                      +++++++.++.|.+||+.+++....+...   ....+.+++|+|+|+++++++.+ +.|.+||+.+++....+.....  
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--  274 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--  274 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--
Confidence            99999999999999999999888777652   22468889999999987776654 8999999999988877765432  


Q ss_pred             ecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC
Q 010470          440 ASNWSRSCISPDESYVAAGS-ADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  503 (510)
                          ..++|+|+|+++++++ .++.|.+||+.+++.+..+..+. .+.+++|+|+|++|++++.+
T Consensus       275 ----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          275 ----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ----CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred             ----ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence                2388999999665554 68999999999999888776543 67899999999977665544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=2.3e-26  Score=216.66  Aligned_cols=269  Identities=14%  Similarity=0.207  Sum_probs=193.7

Q ss_pred             EEEEeeCCCeEEEEeCC-CCcc-eecccccccceeEEEEecCCCEEEEEeCC-CeEEEEEcC--CCC--eeEeecCCCCc
Q 010470          239 RLISGGQDKSIKLWDTN-TGSL-SSTLYGCLGSVLDLAITHDNRSVIAASSS-NNLYVWDVN--SGR--VRHTLTGHTDK  311 (510)
Q Consensus       239 ~l~s~~~dg~i~iwd~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~--~~~--~~~~~~~~~~~  311 (510)
                      .+++++.|+.|.+|++. ++.. ......+...+.+++|+|++++|++++.+ +.|.+|++.  ++.  .+..+..+. .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence            34455779999999995 3322 12223567788999999999999998876 899999997  555  334454444 7


Q ss_pred             eEEEEEecCCCCEEEEEe-CCCcEEEEECC---CCeEeeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECCC-Cce
Q 010470          312 VCAVDVSKISSRHVVSAA-YDRTLKVWDLH---KGYCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQT-GKL  385 (510)
Q Consensus       312 v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~  385 (510)
                      +.+++|+| ++.++++++ .++.|.+||+.   ....+..+.....+.+++|+|+|+++++++ .++.|.+||+.+ ++.
T Consensus        86 ~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           86 LTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            88999999 677665555 48899999994   445555556666799999999999888776 889999999987 544


Q ss_pred             ee----eecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCC--cee--eeEeecCCC--eeecCceeEEEcCCCCE
Q 010470          386 LS----EVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRS--LEV--CGSLRATGN--RVASNWSRSCISPDESY  454 (510)
Q Consensus       386 ~~----~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~--~~~--~~~~~~~~~--~~~~~~~~~~~s~~~~~  454 (510)
                      ..    .+.......+.+++|+|+|+++++++ .++.|.+|++..  +..  ...+.....  ........++|+|+|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence            32    23333335788999999999776555 789999999953  332  222221111  11122345899999998


Q ss_pred             EE-EEcCCCeEEEEeCC--C--cceeecccccCcCEEEEEEeCCCCcEEEee-CCCeEEEcC
Q 010470          455 VA-AGSADGSVYIWSIS--K--ADIVRTLKEHTAPVLSCSWSGLGKPLASAD-KNGVVCVWT  510 (510)
Q Consensus       455 l~-~~~~dg~i~iwd~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd  510 (510)
                      |+ ++..++.|.+|++.  +  .+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|+
T Consensus       245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence            77 45578999999998  2  344555554444 88999999999888777 689999993

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=4.2e-26  Score=209.90  Aligned_cols=253  Identities=14%  Similarity=0.115  Sum_probs=193.6

Q ss_pred             EeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCC-CCceEEEEEec
Q 010470          242 SGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGH-TDKVCAVDVSK  319 (510)
Q Consensus       242 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~-~~~v~~i~~~~  319 (510)
                      +++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            4567899999999988765 4556889999999999999999887 78999999999 8877766665 47789999999


Q ss_pred             CCCCEEEEEeC--C--CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCCcEEEEECC--CCceeeeeccc
Q 010470          320 ISSRHVVSAAY--D--RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQ--TGKLLSEVAAH  392 (510)
Q Consensus       320 ~~~~~l~s~~~--d--g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~~~~~~~  392 (510)
                       ++.++++++.  +  ..|..|++.++. ...+.....+..++|+|+++.|+ +++.++.+.+|++.  ++. ...+..+
T Consensus        95 -dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~  171 (297)
T 2ojh_A           95 -DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHG  171 (297)
T ss_dssp             -TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCS
T ss_pred             -CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccC
Confidence             7888888883  3  445555555554 44455555688999999999887 67788988888853  343 3444444


Q ss_pred             ccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcC-CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---------
Q 010470          393 SLAAVTSISLSRSGNIILTSG-RDNLHNLFDIR-SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD---------  461 (510)
Q Consensus       393 ~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---------  461 (510)
                      . ..+.++.|+|+|++|++++ .++.+.+|++. .+.....+..+...    +..++|+|+|++|++++.+         
T Consensus       172 ~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~~~~~~~~~  246 (297)
T 2ojh_A          172 E-GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG----DWFPHPSPSGDKVVFVSYDADVFDHPRD  246 (297)
T ss_dssp             S-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE----EEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred             C-CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc----cCCeEECCCCCEEEEEEcCCCCCccccc
Confidence            4 7899999999999888766 58899999886 44444455444332    3448999999999988765         


Q ss_pred             --CeEEEEeCCCcce--eecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          462 --GSVYIWSISKADI--VRTLKEHTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       462 --g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                        +.|++||+.+++.  +..+.+|...+.+++|+|+|++|++++.+.
T Consensus       247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence              5699999988765  344447888899999999999988877653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.95  E-value=6.7e-26  Score=212.88  Aligned_cols=262  Identities=10%  Similarity=0.109  Sum_probs=205.0

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceeccccccc--ceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeEeecCC-----C
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLG--SVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRHTLTGH-----T  309 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-----~  309 (510)
                      +++++++.++.|.+||+.+++.+..+.....  .+..++|+|++++++++ +.++.|.+||+.+++.+..+...     .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999988777653322  47899999999876555 46789999999999887766532     2


Q ss_pred             CceEEEEEecCCCCEEEEEe------------CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE
Q 010470          310 DKVCAVDVSKISSRHVVSAA------------YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL  377 (510)
Q Consensus       310 ~~v~~i~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  377 (510)
                      ..+.+++|+| +++.+++++            .++.|.+||+.+++.+..+.....+.+++|+|+|++++++  ++.|.+
T Consensus        82 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence            2577899999 777777775            5799999999999988888777778999999999988887  588999


Q ss_pred             EECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC------------------------cEEEEEcCCceeeeEee
Q 010470          378 WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN------------------------LHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       378 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~------------------------~i~i~d~~~~~~~~~~~  433 (510)
                      ||+.+++....+..+..  ...+.|+|+|..+++++..+                        .|.+||+.+++.. .+.
T Consensus       159 ~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~  235 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE  235 (337)
T ss_dssp             EETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE
T ss_pred             EECCCCcEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee
Confidence            99999988777665431  11237899998776554332                        4689999988765 222


Q ss_pred             cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          434 ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       434 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ...  .......++|+|+|++++++  ++.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|.+||
T Consensus       236 ~~~--~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          236 VRI--MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEE--CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             cCC--CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            211  11223458999999999988  789999999999888777643 4578999999999999999999999996

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=2e-26  Score=239.64  Aligned_cols=280  Identities=10%  Similarity=0.079  Sum_probs=207.1

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccccc---ceeEEEEecCCCEEEEEeCC---------CeEEEE
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG---SVLDLAITHDNRSVIAASSS---------NNLYVW  294 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~iw  294 (510)
                      .+.+++|+|||+++++ +.||.|++||+.+++....+.+|..   .|.+++|+|||++|++++.+         +.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678899999997776 7899999999999988777766654   49999999999999999864         788999


Q ss_pred             EcCCCCeeEee---cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-Cce----------------
Q 010470          295 DVNSGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNC----------------  354 (510)
Q Consensus       295 d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i----------------  354 (510)
                      |+.+++. ..+   .+|...+..++|+| +++.|++++. +.|++||+.++........+ ..+                
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             ECCCCce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            9998876 333   34555688999999 8888888884 89999999988776555432 222                


Q ss_pred             --eEEEEcCCCCEEEEecCCC----------------------------------cEEEEECCCCceeeeeccc-----c
Q 010470          355 --NALAFSMDGQTIFSGHIDG----------------------------------NLRLWDIQTGKLLSEVAAH-----S  393 (510)
Q Consensus       355 --~~i~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~-----~  393 (510)
                        .+++|+|||+.|++++.++                                  .|++||+.+++....+..+     +
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence              7899999999999876543                                  7999999888765555543     1


Q ss_pred             cccEEEEEEcCCCCEEEEEecC----CcEEEEEcCCceeeeEeecCC-CeeecCceeEEEcCCCCEEEE--EcCCC----
Q 010470          394 LAAVTSISLSRSGNIILTSGRD----NLHNLFDIRSLEVCGSLRATG-NRVASNWSRSCISPDESYVAA--GSADG----  462 (510)
Q Consensus       394 ~~~i~~i~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~--~~~dg----  462 (510)
                      ...+.++.|+|||+++++.+..    ..|.+||+.+++....+..+. ..+......++|+|||+.|+.  +..+|    
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  333 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK  333 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence            3678999999999988776533    579999999888766554322 111100124789999997765  44566    


Q ss_pred             --eEEEEe-CCCcce--eecccccCcCEEE-EEEeCCCCcEEEeeCC---CeEEEcC
Q 010470          463 --SVYIWS-ISKADI--VRTLKEHTAPVLS-CSWSGLGKPLASADKN---GVVCVWT  510 (510)
Q Consensus       463 --~i~iwd-~~~~~~--~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d---g~i~iwd  510 (510)
                        .|++|| ..++..  ...+..+...+.. ++|+|||+.|+..+.+   +.+.+|+
T Consensus       334 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             eeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence              577777 344441  4555544445554 6999999998766555   7788884

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=9.2e-26  Score=235.24  Aligned_cols=273  Identities=14%  Similarity=0.109  Sum_probs=205.0

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  304 (510)
                      .|.+++|||||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|++++. +.|++||+.+++....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence            4899999999999999986 999999999873  44567778889999999999999998875 5899999998876655


Q ss_pred             ecCCCCc----------------eEEEEEecCCCCEEEEEeCCC---------------------------------cEE
Q 010470          305 LTGHTDK----------------VCAVDVSKISSRHVVSAAYDR---------------------------------TLK  335 (510)
Q Consensus       305 ~~~~~~~----------------v~~i~~~~~~~~~l~s~~~dg---------------------------------~i~  335 (510)
                      ...+...                +.++.|+| +++.|++++.|+                                 .|.
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            5444432                47799999 788888877665                                 889


Q ss_pred             EEECCC-CeEeeeeee---cCceeEEEEcCCCCEEEEecC-----CCcEEEEECCCCceeeeecccccc---cEEEEEEc
Q 010470          336 VWDLHK-GYCVNTIIF---HSNCNALAFSMDGQTIFSGHI-----DGNLRLWDIQTGKLLSEVAAHSLA---AVTSISLS  403 (510)
Q Consensus       336 iwd~~~-~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~---~i~~i~~~  403 (510)
                      +||+.+ +........   ...+..++| |||++|++++.     ++.|++||+.+++....+..+...   .+.++.|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999988 775544322   234889999 99999986543     567999999999877666554322   34688999


Q ss_pred             CCCCEEEEEecCCcEEEEEcC-CceeeeEeecCCCeeecCceeE-EEcCCCCEEEE-EcCCC--eEEEEeCCC-cceeec
Q 010470          404 RSGNIILTSGRDNLHNLFDIR-SLEVCGSLRATGNRVASNWSRS-CISPDESYVAA-GSADG--SVYIWSISK-ADIVRT  477 (510)
Q Consensus       404 ~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~-~~~dg--~i~iwd~~~-~~~~~~  477 (510)
                      |+|+++++++.+|.+.||.+. .+. ...+..+...+.    .+ .|+|+|+.|+. ++.++  .++||++.. +.....
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~----~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~  420 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVD----ELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQR  420 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEE----EEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred             CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEE----eEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence            999999999999988888765 333 444444433322    24 59999997754 45455  899999864 555566


Q ss_pred             ccccCcCEEEEEEeCCCCcEEEeeCC----CeEEEc
Q 010470          478 LKEHTAPVLSCSWSGLGKPLASADKN----GVVCVW  509 (510)
Q Consensus       478 ~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iw  509 (510)
                      +.. ...+.+++|+|||++|+....+    +.+.+|
T Consensus       421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~  455 (741)
T 2ecf_A          421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELF  455 (741)
T ss_dssp             CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence            654 5678899999999988765433    345554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=2.1e-24  Score=202.29  Aligned_cols=272  Identities=12%  Similarity=0.108  Sum_probs=197.7

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeC-CCeEEEEeCCCCcc-eeccccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSL-SSTLYGC  266 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~~~~  266 (510)
                      +++...++.+.+|+...         .+....+..+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+
T Consensus        13 ~v~~~~~~~v~~~d~~~---------~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A           13 IVVEQHLRRISFFSTDT---------LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             EEEEGGGTEEEEEETTT---------CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             EEEecCCCeEEEEeCcc---------cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            34455677788887433         22344445555666 9999999997766655 88999999999987 6667666


Q ss_pred             ccceeEEEEecCCCEEEEEeCCC---eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC-EEEEEeCCCc-EEEEECCC
Q 010470          267 LGSVLDLAITHDNRSVIAASSSN---NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR-HVVSAAYDRT-LKVWDLHK  341 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~s~~~dg~-i~iwd~~~  341 (510)
                      ..+..+++|+|++++++++..++   .|.+||+.+++.+..+..+ ..+.+++|+| +++ +++++..++. |.+|++..
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEecCCCceEEEEEECC
Confidence            66666699999999999555553   8999999999888877644 4568999999 555 5555566688 99999875


Q ss_pred             CeEe-----eeeeecCceeEEEEcCCCCEEE-EecCCCcEEEEECCCCce---eeeecccccccEEEEEEcCCCCEEEEE
Q 010470          342 GYCV-----NTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQTGKL---LSEVAAHSLAAVTSISLSRSGNIILTS  412 (510)
Q Consensus       342 ~~~~-----~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~  412 (510)
                      ...+     ..+.....+..++|+|+|++++ ++..++.|.+||+.+++.   +..+...  ..+..++|+|+|++++++
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEE
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEE
Confidence            4322     2223345589999999999665 455788999999999887   6666654  677899999999977665


Q ss_pred             e-cCCcEEEEEcCCcee--eeEeecCC---CeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCcce
Q 010470          413 G-RDNLHNLFDIRSLEV--CGSLRATG---NRVASNWSRSCISPDESYVAAGS-ADGSVYIWSISKADI  474 (510)
Q Consensus       413 ~-~d~~i~i~d~~~~~~--~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~  474 (510)
                      + .++.|.+||+.+++.  +..+....   .........++|+|+|++|++++ .++.|.+||+.....
T Consensus       239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            5 577899999998877  33333221   11111113479999999886554 567999999986543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=2.8e-25  Score=224.76  Aligned_cols=271  Identities=14%  Similarity=0.095  Sum_probs=200.1

Q ss_pred             ccceEEEEEecCCCEEEEeeC-CCeEEEEeCCCCcceecccccc-cceeEEEEecCCCEEEEEeC---CCeEEEEEcCC-
Q 010470          225 EGGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTLYGCL-GSVLDLAITHDNRSVIAASS---SNNLYVWDVNS-  298 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~-  298 (510)
                      ..+|.+++|+|||+.||+++. ||++.||++.++.... +..+. ..+..++|+|| +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999999887 9999999997666544 44444 68999999999 77777765   44556655543 


Q ss_pred             --CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC----
Q 010470          299 --GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID----  372 (510)
Q Consensus       299 --~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----  372 (510)
                        +... .+..+. .+...+|+|+....+++++.++.+.+||+.++........+.  .+++|+|||++|++++.+    
T Consensus        99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~  174 (582)
T 3o4h_A           99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR  174 (582)
T ss_dssp             STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred             CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence              3322 333222 344668888444555555555666699999888766555444  889999999999987766    


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC--cEEEEEcCCceeeeEeecCCCeeec----CceeE
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN--LHNLFDIRSLEVCGSLRATGNRVAS----NWSRS  446 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~  446 (510)
                      +.|++||+.+++.. .+..+. ..+.+++|+|||+.|+++..++  .|++||+.+++.. .+..+...+..    .+...
T Consensus       175 ~~i~~~d~~~g~~~-~l~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          175 VSLFTSNLSSGGLR-VFDSGE-GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             EEEEEEETTTCCCE-EECCSS-CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred             eEEEEEcCCCCCce-EeecCC-CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence            77999999888755 455444 7789999999999999888888  8999999988876 55444433322    11123


Q ss_pred             EEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCe---EEEcC
Q 010470          447 CISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGV---VCVWT  510 (510)
Q Consensus       447 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~---i~iwd  510 (510)
                      +|+|||.++++++.+|.+++|++  ++....   +.+.|.+++|+ +++++++++.+..   +.+||
T Consensus       252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          252 GYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             eEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence            39999999999999999999999  665542   34678999999 9998888877744   55554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=2.9e-25  Score=230.81  Aligned_cols=294  Identities=12%  Similarity=-0.006  Sum_probs=208.4

Q ss_pred             cCCceEEecccccccccccCCCccceeecccccc---ceEEEEEecCCCEEEEeeCC---------CeEEEEeCCCCcc-
Q 010470          193 QVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEG---GCASILFEYNSARLISGGQD---------KSIKLWDTNTGSL-  259 (510)
Q Consensus       193 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~-  259 (510)
                      +.||.+++|+...         .++...+.+|..   .|.+++|||||++|++++.+         +.|.+||+.+++. 
T Consensus        34 ~~dg~i~~~d~~~---------g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  104 (723)
T 1xfd_A           34 EQKGTVRLWNVET---------NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ  104 (723)
T ss_dssp             CSSSCEEEBCGGG---------CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred             eCCCCEEEEECCC---------CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE
Confidence            4677788887543         223445556654   49999999999999999874         7888999998876 


Q ss_pred             -eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCce------------------EEEEEecC
Q 010470          260 -SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV------------------CAVDVSKI  320 (510)
Q Consensus       260 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v------------------~~i~~~~~  320 (510)
                       +....+|...+..++|+|||+.|++++. +.|++||+.+++.......+...+                  .++.|+| 
T Consensus       105 ~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-  182 (723)
T 1xfd_A          105 SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-  182 (723)
T ss_dssp             ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-
T ss_pred             eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-
Confidence             2223345556899999999999999887 799999999888776665544433                  7899999 


Q ss_pred             CCCEEEEEeCCC----------------------------------cEEEEECCCCeEeeeeeec-------CceeEEEE
Q 010470          321 SSRHVVSAAYDR----------------------------------TLKVWDLHKGYCVNTIIFH-------SNCNALAF  359 (510)
Q Consensus       321 ~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~-------~~i~~i~~  359 (510)
                      +++.|++++.++                                  .|++||+.++.....+..+       ..+..++|
T Consensus       183 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~  262 (723)
T 1xfd_A          183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (723)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE
Confidence            888888876543                                  7999999988765555432       34789999


Q ss_pred             cCCCCEEEEecC----CCcEEEEECCCCceeeeecccccccE----EEEEEcCCCCEEEE--EecCC------cEEEEE-
Q 010470          360 SMDGQTIFSGHI----DGNLRLWDIQTGKLLSEVAAHSLAAV----TSISLSRSGNIILT--SGRDN------LHNLFD-  422 (510)
Q Consensus       360 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~i----~~i~~~~~~~~l~~--~~~d~------~i~i~d-  422 (510)
                      +|||+++++...    +..|++||+.+++....+..++...+    ..+.|+|+|+.|+.  +..++      .|.+|| 
T Consensus       263 SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~  342 (723)
T 1xfd_A          263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS  342 (723)
T ss_dssp             SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS
T ss_pred             eCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec
Confidence            999998876543    35799999999887665544332333    37899999997765  44566      567777 


Q ss_pred             cCCcee--eeEeecCCCeeecCceeEEEcCCCCEEEEEcCC---CeEEEEeCCCcc--eeecccc---cCcCEEEEEEeC
Q 010470          423 IRSLEV--CGSLRATGNRVASNWSRSCISPDESYVAAGSAD---GSVYIWSISKAD--IVRTLKE---HTAPVLSCSWSG  492 (510)
Q Consensus       423 ~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~---~~~~v~~~~~~~  492 (510)
                      ..++..  ...+.......   ...++|+|||++|+..+.+   +.+++|++....  ....+..   |...+..++|+|
T Consensus       343 ~~~~~~~~~~~l~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sp  419 (723)
T 1xfd_A          343 QPNSSNDNIQSITSGDWDV---TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSH  419 (723)
T ss_dssp             SCCSSSCCCCBSCCSSSCE---EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred             cCCCCccceeEeecCCeEE---EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECC
Confidence            344330  23332211111   1125899999998766554   789999986532  3344443   567788999999


Q ss_pred             CCCcEEEe
Q 010470          493 LGKPLASA  500 (510)
Q Consensus       493 ~~~~l~s~  500 (510)
                      +|++|+..
T Consensus       420 dg~~l~~~  427 (723)
T 1xfd_A          420 SMDFFLLK  427 (723)
T ss_dssp             TSSEEEEE
T ss_pred             CCCEEEEE
Confidence            99987764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=2.1e-24  Score=203.10  Aligned_cols=288  Identities=12%  Similarity=0.155  Sum_probs=198.4

Q ss_pred             hcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCC-CeEEEEeCC--CCcc--eeccccc
Q 010470          192 QQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQD-KSIKLWDTN--TGSL--SSTLYGC  266 (510)
Q Consensus       192 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~--~~~~--~~~~~~~  266 (510)
                      ...++.+.+|+.....      ...... ...|...+.+++|+|+|++|++++.+ +.|.+|++.  ++..  +..+..+
T Consensus        11 ~~~~~~v~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A           11 SPESQQIHVWNLNHEG------ALTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EGGGTEEEEEEECTTS------CEEEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             CCCCCeEEEEEECCCC------cEEEee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            3567888888743100      011122 23467789999999999999888886 999999997  5543  3344433


Q ss_pred             ccceeEEEEecCCCEEEEEeC-CCeEEEEEcC---CCCeeEeecCCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCC
Q 010470          267 LGSVLDLAITHDNRSVIAASS-SNNLYVWDVN---SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHK  341 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~  341 (510)
                      . .+..++|+|+++++++++. ++.|.+||+.   ..+....+..+ ..+.+++|+| +++.+++++ .++.|.+||+.+
T Consensus        84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A           84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred             C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecC
Confidence            3 7899999999998877765 8899999994   33444555433 4588899999 677666666 899999999987


Q ss_pred             -CeEee----eee--ecCceeEEEEcCCCCEEEE-ecCCCcEEEEECCC--Cce--eeeec---cc--ccccEEEEEEcC
Q 010470          342 -GYCVN----TII--FHSNCNALAFSMDGQTIFS-GHIDGNLRLWDIQT--GKL--LSEVA---AH--SLAAVTSISLSR  404 (510)
Q Consensus       342 -~~~~~----~~~--~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~---~~--~~~~i~~i~~~~  404 (510)
                       +....    .+.  ....+.+++|+|+|+++++ +..++.|.+||+..  +..  ...+.   ..  ....+.+++|+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~  240 (343)
T 1ri6_A          161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  240 (343)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence             65432    222  2245889999999997764 45889999999953  432  22222   11  113577899999


Q ss_pred             CCCEEEEEe-cCCcEEEEEcC----CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCC--Ccc--e
Q 010470          405 SGNIILTSG-RDNLHNLFDIR----SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS-ADGSVYIWSIS--KAD--I  474 (510)
Q Consensus       405 ~~~~l~~~~-~d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~--~  474 (510)
                      +|++|+++. .++.|.+||+.    ..+.+..+.....     +..++|+|+|++|++++ .++.|.+|+++  +++  .
T Consensus       241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~  315 (343)
T 1ri6_A          241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-----PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE  315 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-----CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred             CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-----cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence            999887554 78999999998    2344444443333     23489999999888877 58999999554  553  3


Q ss_pred             eecccccCcCEEEEEEeCCCC
Q 010470          475 VRTLKEHTAPVLSCSWSGLGK  495 (510)
Q Consensus       475 ~~~~~~~~~~v~~~~~~~~~~  495 (510)
                      +..+... ....+++|.|+.+
T Consensus       316 ~~~~~~g-~~p~~i~~~~~~~  335 (343)
T 1ri6_A          316 KGRYAVG-QGPMWVVVNAHEG  335 (343)
T ss_dssp             EEEEECS-SSCCEEEEEEEC-
T ss_pred             ccccccC-CCCeeEEEEcccC
Confidence            3444432 3456788877643

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=6.4e-25  Score=236.59  Aligned_cols=279  Identities=11%  Similarity=0.103  Sum_probs=221.7

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      ...+.+|.+.+.++.|+++ .++++++.||.+.||.+.. +.....+..|. .+..++|+|||+.++++. ++.|++|++
T Consensus       196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~  272 (1045)
T 1k32_A          196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNP  272 (1045)
T ss_dssp             EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECT
T ss_pred             eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecC
Confidence            3455789999999999988 6777888889999998653 44445555554 467789999999888874 889999998


Q ss_pred             CCCCeeEeecC-----------CCCceEEEEEe-cCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCC
Q 010470          297 NSGRVRHTLTG-----------HTDKVCAVDVS-KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDG  363 (510)
Q Consensus       297 ~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~  363 (510)
                      .... +..+..           |...+.+++|+ | ++..+++++ ++.|.+|++.++.......... .+..++|+ +|
T Consensus       273 ~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg  348 (1045)
T 1k32_A          273 DTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TK  348 (1045)
T ss_dssp             TTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SE
T ss_pred             CceE-eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CC
Confidence            5443 335544           34478999999 8 788888877 8899999998887655333344 68899999 99


Q ss_pred             CEEEEecCCCcEE-EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecC
Q 010470          364 QTIFSGHIDGNLR-LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN  442 (510)
Q Consensus       364 ~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  442 (510)
                      +.|++++.++.+. +||+.+++... +..+ ...+.+++|+|+|++|++++.++.|++||+.+++.......+...+.  
T Consensus       349 ~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~-~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~--  424 (1045)
T 1k32_A          349 VAFIHGTREGDFLGIYDYRTGKAEK-FEEN-LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT--  424 (1045)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEE-CCCC-CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC--
T ss_pred             CeEEEEECCCceEEEEECCCCCceE-ecCC-ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc--
Confidence            9999888888898 99998776543 3333 37899999999999999999999999999999888777655554443  


Q ss_pred             ceeEEEcCCCCEEEEEcCCC----------eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          443 WSRSCISPDESYVAAGSADG----------SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       443 ~~~~~~s~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                        .++|+|||++|++++.++          .|++||+.+++ ...+..|...+.+++|+|||++|++++.++...+|+
T Consensus       425 --~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          425 --DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             --CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             --ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence              389999999998887644          89999999887 666777888899999999999999998877766663

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=1.4e-24  Score=225.02  Aligned_cols=275  Identities=13%  Similarity=0.115  Sum_probs=203.7

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-----CC
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-----GR  300 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~  300 (510)
                      ..|.+++|||| ..++.+. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .++.|++||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            56999999999 6666554 5999999999886643 44566778999999999999885 679999999998     77


Q ss_pred             eeEeecCCCCc--------------eEEEEEecCCCCEEEEEe---------------------------------CCCc
Q 010470          301 VRHTLTGHTDK--------------VCAVDVSKISSRHVVSAA---------------------------------YDRT  333 (510)
Q Consensus       301 ~~~~~~~~~~~--------------v~~i~~~~~~~~~l~s~~---------------------------------~dg~  333 (510)
                      .......+...              +.++.|+| ++++|++++                                 .++.
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            66555444433              47899999 888888887                                 4578


Q ss_pred             EEEEECCCCeEeeeeee---cCceeEEEEcCCCCEEEEecCCC-----cEEEEECCCCceeeeec-ccccc---cEEEEE
Q 010470          334 LKVWDLHKGYCVNTIIF---HSNCNALAFSMDGQTIFSGHIDG-----NLRLWDIQTGKLLSEVA-AHSLA---AVTSIS  401 (510)
Q Consensus       334 i~iwd~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-~~~~~---~i~~i~  401 (510)
                      |.+||+.++........   ...+.+++|+|||+.|++++.++     .|++||+.+++....+. .....   .+.++.
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT  316 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence            99999998886554432   23488999999999999877665     89999999884333332 22111   246789


Q ss_pred             EcC--CCCEEEEEecCCcEEEEEcC-CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CC----eEEEEeCCCcc
Q 010470          402 LSR--SGNIILTSGRDNLHNLFDIR-SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DG----SVYIWSISKAD  473 (510)
Q Consensus       402 ~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg----~i~iwd~~~~~  473 (510)
                      |+|  +|+++++++.++.+++|++. ++.....+..+...+.   ..++|+|+|+.|++++. ++    .|+.||+.++.
T Consensus       317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~---~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT---NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE---EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE---eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            999  99999999999999999876 5555555544332221   12689999998766544 44    67777877765


Q ss_pred             eeecccccCcCEEEEEEeCCCCcEEEeeCC----CeEEEcC
Q 010470          474 IVRTLKEHTAPVLSCSWSGLGKPLASADKN----GVVCVWT  510 (510)
Q Consensus       474 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd  510 (510)
                       ...+. |...+.+++|+|||++|+..+.+    +.|++||
T Consensus       394 -~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          394 -TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             -CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             -ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence             33343 66779999999999988766443    5688885

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=1.5e-24  Score=203.62  Aligned_cols=274  Identities=13%  Similarity=0.111  Sum_probs=206.0

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeecc-cccc-ceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKIN-AHEG-GCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYG  265 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~  265 (510)
                      ++.+..++.+.+|+...         .+....+. ++.. .+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+..
T Consensus         4 ~v~~~~~~~v~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEK---------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEETTTEEEEEETTT---------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             EEEcCCCCeEEEEECCC---------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence            34556778888887433         12333333 2222 48899999999866 5556678999999999887766542


Q ss_pred             -c----ccceeEEEEecCCCEEEEEe------------CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEE
Q 010470          266 -C----LGSVLDLAITHDNRSVIAAS------------SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSA  328 (510)
Q Consensus       266 -~----~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~  328 (510)
                       +    ...+.+++|+|+|+++++++            .++.|.+||+.+++....+.. ...+.++.|+| ++++++++
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~  152 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL  152 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE
T ss_pred             CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe
Confidence             1    23678899999999999886            579999999998888777764 45678899999 77777776


Q ss_pred             eCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCC------------------------cEEEEECCCCc
Q 010470          329 AYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG------------------------NLRLWDIQTGK  384 (510)
Q Consensus       329 ~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------------------------~i~i~d~~~~~  384 (510)
                        ++.|.+||+.+++....+........+.|+|+|..+++.+..+                        .|.+||+.+++
T Consensus       153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  230 (337)
T 1pby_B          153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence              6899999999999887776554233457899998776554332                        46899999887


Q ss_pred             eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeE
Q 010470          385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV  464 (510)
Q Consensus       385 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i  464 (510)
                      ............+.+++|+|+|++++++  ++.|.+||+.+++....+.....     ...++|+|+|++|++++.++.|
T Consensus       231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~i  303 (337)
T 1pby_B          231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS-----YYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC-----CCEEEECTTSCEEEEESBSSEE
T ss_pred             ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCc-----eeeEEECCCCCEEEEEcCCCcE
Confidence            6522112222578899999999999988  78999999999988777764432     2348999999999999999999


Q ss_pred             EEEeCCCcceeecccccC
Q 010470          465 YIWSISKADIVRTLKEHT  482 (510)
Q Consensus       465 ~iwd~~~~~~~~~~~~~~  482 (510)
                      .+||+.+++.+..+..+.
T Consensus       304 ~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          304 AAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             EEEETTTCCEEEEEECGG
T ss_pred             EEEECcCCcEEEEEEcCC
Confidence            999999998887776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=8.3e-25  Score=226.71  Aligned_cols=267  Identities=13%  Similarity=0.143  Sum_probs=195.6

Q ss_pred             eEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce-ecccccc-----------------cceeEEEEecCCCEEEEEeCCC
Q 010470          228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLS-STLYGCL-----------------GSVLDLAITHDNRSVIAASSSN  289 (510)
Q Consensus       228 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~d~  289 (510)
                      +..+.|.  |+.+++++.|+ | +||+.+++.+ ..+..+.                 ..|.+++|+|| +.++.+. ++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence            4557777  66778888888 8 9999998873 3333332                 56999999999 6666654 59


Q ss_pred             eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-----CeEeeeeeecCc-----------
Q 010470          290 NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYCVNTIIFHSN-----------  353 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~-----------  353 (510)
                      .|++||+.+++... +..+...+.+++|+| +++.|+++ .++.|++||+.+     +........+..           
T Consensus       102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e  178 (706)
T 2z3z_A          102 GLVGFDMLARKVTY-LFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR  178 (706)
T ss_dssp             EEEEEETTTTEEEE-EECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred             EEEEEECCCCceEE-ccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence            99999998876544 444677788999999 78888885 589999999988     776654443332           


Q ss_pred             ----eeEEEEcCCCCEEEEec---------------------------------CCCcEEEEECCCCceeeeecc-cccc
Q 010470          354 ----CNALAFSMDGQTIFSGH---------------------------------IDGNLRLWDIQTGKLLSEVAA-HSLA  395 (510)
Q Consensus       354 ----i~~i~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~-~~~~  395 (510)
                          +.++.|+|||++|++++                                 .++.|++||+.+++....... .+..
T Consensus       179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  258 (706)
T 2z3z_A          179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK  258 (706)
T ss_dssp             CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred             hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence                48999999999999886                                 446799999988876544332 2336


Q ss_pred             cEEEEEEcCCCCEEEEEecCC-----cEEEEEcCCc-eeeeEeecCCCeeecCceeEEEcC--CCCEEEEEcCCCeEEEE
Q 010470          396 AVTSISLSRSGNIILTSGRDN-----LHNLFDIRSL-EVCGSLRATGNRVASNWSRSCISP--DESYVAAGSADGSVYIW  467 (510)
Q Consensus       396 ~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iw  467 (510)
                      .+.+++|+|||++|++++.++     .|.+||+.++ ...................++|+|  ||+++++++.||.++||
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~  338 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY  338 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence            799999999999999887765     8999999988 433332222211111123478999  99999999999999999


Q ss_pred             eCC-CcceeecccccCcCEEE-EEEeCCCCcEEEeeCC
Q 010470          468 SIS-KADIVRTLKEHTAPVLS-CSWSGLGKPLASADKN  503 (510)
Q Consensus       468 d~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d  503 (510)
                      .+. ++..+..+..|...+.+ ++|+|+|+.|+.++.+
T Consensus       339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            876 56777777778888877 7999999977665544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=8.8e-24  Score=199.41  Aligned_cols=262  Identities=10%  Similarity=0.138  Sum_probs=182.9

Q ss_pred             CCeEEEEeCC--CCccee-cccccccceeEEEEecCCCEEEEEeC---CCeEEEEEcCCCC--eeEeecCCCCceEEEEE
Q 010470          246 DKSIKLWDTN--TGSLSS-TLYGCLGSVLDLAITHDNRSVIAASS---SNNLYVWDVNSGR--VRHTLTGHTDKVCAVDV  317 (510)
Q Consensus       246 dg~i~iwd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~  317 (510)
                      ++.|.+|+++  +++... ....+...+..++|+|+|+ +++++.   ++.|++|++.++.  .+..+..+...+..++|
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            4567777654  455432 2334567778899999999 665554   6899999998766  34444557778899999


Q ss_pred             ecCCCCEEEEEe-CCCcEEEEECC-CCe--Eeeeeeec----------CceeEEEEcCCCCEEEEecCCCcEEEEECC-C
Q 010470          318 SKISSRHVVSAA-YDRTLKVWDLH-KGY--CVNTIIFH----------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ-T  382 (510)
Q Consensus       318 ~~~~~~~l~s~~-~dg~i~iwd~~-~~~--~~~~~~~~----------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~  382 (510)
                      +| +++++++++ .++.|.+||+. ++.  .+..+...          ..+.+++|+|+|+.++++..++.|.+||+. +
T Consensus        94 sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           94 DE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             ET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             CC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence            99 777777776 68999999995 332  23333221          137789999999976777778899999998 4


Q ss_pred             Cceee--eecccccccEEEEEEcCCCCEEEE-EecCCcEEEEEcCC--ceee--eEeecCCCe--eecCceeEEEcCCCC
Q 010470          383 GKLLS--EVAAHSLAAVTSISLSRSGNIILT-SGRDNLHNLFDIRS--LEVC--GSLRATGNR--VASNWSRSCISPDES  453 (510)
Q Consensus       383 ~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~~--~~~~~~~~~--~~~~~~~~~~s~~~~  453 (510)
                      ++...  .+.......+..++|+|+|+++++ +..++.+.+|++..  +...  ..+......  .......++|+|||+
T Consensus       173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred             CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence            54322  223333246888999999996666 55678999999874  4432  222221110  012244589999999


Q ss_pred             EEE-EEcCCCeEEEEeCCCc---ceeecccccCcCEEEEEEeCCCCcEEEeeC-CCeEEEc
Q 010470          454 YVA-AGSADGSVYIWSISKA---DIVRTLKEHTAPVLSCSWSGLGKPLASADK-NGVVCVW  509 (510)
Q Consensus       454 ~l~-~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iw  509 (510)
                      +|+ ++..++.|.+|++...   ..+..+..+...+.+++|+|+|++|++++. ++.|.+|
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            875 5556899999998732   445555556667899999999998888775 4899998

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=5.4e-24  Score=195.74  Aligned_cols=252  Identities=12%  Similarity=0.076  Sum_probs=186.8

Q ss_pred             hcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCC-Ccceeccccc-ccc
Q 010470          192 QQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-GSLSSTLYGC-LGS  269 (510)
Q Consensus       192 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~  269 (510)
                      ...++.+.+|+...          .....+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+ ...
T Consensus        18 ~~~~~~i~~~d~~~----------~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (297)
T 2ojh_A           18 GSMRSSIEIFNIRT----------RKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC   86 (297)
T ss_dssp             CCCCEEEEEEETTT----------TEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred             CCcceeEEEEeCCC----------CceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccc
Confidence            45678888887443          22335667899999999999999999987 78999999998 8776666555 478


Q ss_pred             eeEEEEecCCCEEEEEe--CCC--eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEE-EEeCCCcEEEEEC--CCC
Q 010470          270 VLDLAITHDNRSVIAAS--SSN--NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV-SAAYDRTLKVWDL--HKG  342 (510)
Q Consensus       270 v~~~~~~~~~~~l~~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~~~dg~i~iwd~--~~~  342 (510)
                      +.+++|+|++++|++++  .++  .|.+|++.++. ...+..+ ..+..+.|+| ++..++ +++.++.+.+|++  .++
T Consensus        87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTC
T ss_pred             ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCC
Confidence            89999999999999998  334  44445545544 3444433 3488999999 666555 7888999999985  445


Q ss_pred             eEeeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECC-CCceeeeecccccccEEEEEEcCCCCEEEEEecC-----
Q 010470          343 YCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQ-TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-----  415 (510)
Q Consensus       343 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----  415 (510)
                      ...........+.+++|+|+|+.|++++ .++.+.+|++. .+.....+..+. ..+.++.|+|+|++|++++.+     
T Consensus       164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA-YGDWFPHPSPSGDKVVFVSYDADVFD  242 (297)
T ss_dssp             CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS-EEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred             cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC-cccCCeEECCCCCEEEEEEcCCCCCc
Confidence            5443334445689999999999887655 58899999876 455566666554 789999999999999888765     


Q ss_pred             ------CcEEEEEcCCceeeeEe--ecCCCeeecCceeEEEcCCCCEEEEEcCCC
Q 010470          416 ------NLHNLFDIRSLEVCGSL--RATGNRVASNWSRSCISPDESYVAAGSADG  462 (510)
Q Consensus       416 ------~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg  462 (510)
                            +.|.+||+.+++.....  ..+...+    ..++|+|+|++|++++.+.
T Consensus       243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~----~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTM----NSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CCSSEEEEEEEEETTSCSCEEEEEEEESTTTS----CSCCBCTTSSEEEEEEECC
T ss_pred             ccccCceEEEEEecCCCCceeeeccCCCCccc----ccceECCCCCEEEEEEecc
Confidence                  56999999887654333  2333333    3378999999998887653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.93  E-value=6.3e-24  Score=203.70  Aligned_cols=291  Identities=15%  Similarity=0.131  Sum_probs=207.0

Q ss_pred             cceeeccccccceEE-----EEEecCCCEEEEeeC-CC--eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC
Q 010470          216 TCKHKINAHEGGCAS-----ILFEYNSARLISGGQ-DK--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS  287 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~-----~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  287 (510)
                      .....+..|.+.+..     .+|||||++|+.++. +|  .|.+||+.+++......++...+..+.|+|||+.|+.++.
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~  100 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD  100 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred             cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence            355666777766665     889999999998887 66  4888899998887777677666667899999999999999


Q ss_pred             CCeEEEEEcCCCCeeEeecCCCCceEEEEE--ecCCCCEEEEE----------------------eCCCcEEEEECCCCe
Q 010470          288 SNNLYVWDVNSGRVRHTLTGHTDKVCAVDV--SKISSRHVVSA----------------------AYDRTLKVWDLHKGY  343 (510)
Q Consensus       288 d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~  343 (510)
                      ++.|++||+.+++....+..+...+....|  +| ++..++..                      +.++.|.+||+.++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            999999999999877777666665544443  66 66666632                      245789999999988


Q ss_pred             EeeeeeecCceeEEEEcC-CCCEEEEecCC------CcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEec-
Q 010470          344 CVNTIIFHSNCNALAFSM-DGQTIFSGHID------GNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGR-  414 (510)
Q Consensus       344 ~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~-  414 (510)
                      ..........+..+.|+| +|+.|+....+      ..|.++|...+.. ..+..+.. ..+..+.|+|+|+.|+..+. 
T Consensus       180 ~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (388)
T 3pe7_A          180 STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYL  258 (388)
T ss_dssp             EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecC
Confidence            766666666789999999 99988866543      3788888865543 33333321 35778999999997755443 


Q ss_pred             CC----cEEEEEcCCceeeeEeecCCCe-eecCceeEEEcCCCCEEEEE---------cCCCeEEEEeCCCcceeecccc
Q 010470          415 DN----LHNLFDIRSLEVCGSLRATGNR-VASNWSRSCISPDESYVAAG---------SADGSVYIWSISKADIVRTLKE  480 (510)
Q Consensus       415 d~----~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~  480 (510)
                      ++    .|++||+.+++........... .........|+|||+.|+..         ..+..|++||+.+++. ..+..
T Consensus       259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~  337 (388)
T 3pe7_A          259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVAR  337 (388)
T ss_dssp             TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEE
T ss_pred             CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEecc
Confidence            22    3999999988754332222200 00111224689999988754         4466899999988765 34444


Q ss_pred             cCc-----------CEEEEEEeCCCCcEEEee-CCCeEEEc
Q 010470          481 HTA-----------PVLSCSWSGLGKPLASAD-KNGVVCVW  509 (510)
Q Consensus       481 ~~~-----------~v~~~~~~~~~~~l~s~~-~dg~i~iw  509 (510)
                      |..           .+.+++|+|||+.|+.++ .+|...+|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          338 HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence            544           578899999999877655 56776666

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=6.5e-24  Score=200.38  Aligned_cols=261  Identities=10%  Similarity=0.132  Sum_probs=191.8

Q ss_pred             EEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccc-cceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeEeecC
Q 010470          230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL-GSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRHTLTG  307 (510)
Q Consensus       230 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~  307 (510)
                      ++++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++++++++ ..++.|.+||+.+++....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678889999999999999999999998877766443 257889999999976655 4689999999999988777653


Q ss_pred             CC------CceEEEEEecCCCCEEEEEeCC------------CcEEEEECCCCe---EeeeeeecCceeEEEEcCCCCEE
Q 010470          308 HT------DKVCAVDVSKISSRHVVSAAYD------------RTLKVWDLHKGY---CVNTIIFHSNCNALAFSMDGQTI  366 (510)
Q Consensus       308 ~~------~~v~~i~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~---~~~~~~~~~~i~~i~~~~~~~~l  366 (510)
                      +.      ..+.+++|+| +++++++++.+            +.|.+||+.+++   .+..+..+..+.+++|+|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence            32      2378899999 78888887755            899999998743   334445556688999999999 5


Q ss_pred             EEecCCCcEEEEECCCCceeeeecccccc-----------------------cEEEEEEcCCCCE-----------EEEE
Q 010470          367 FSGHIDGNLRLWDIQTGKLLSEVAAHSLA-----------------------AVTSISLSRSGNI-----------ILTS  412 (510)
Q Consensus       367 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------------------~i~~i~~~~~~~~-----------l~~~  412 (510)
                      ++++.  .|.+||+.+++....+......                       .+.++.+++++..           +...
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            55543  4999999999887766543100                       3455677765421           1122


Q ss_pred             ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEe
Q 010470          413 GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP-DESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS  491 (510)
Q Consensus       413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  491 (510)
                      ..++.+.+|++..         .    ...+..++++| +|++++++  ++.|.+||+.+++.+..+..+ ..+.+++|+
T Consensus       240 ~~~~~~~~~~~~~---------~----~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s  303 (349)
T 1jmx_B          240 LKTGKTHTQEFAD---------L----TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFD  303 (349)
T ss_dssp             TTTCCEEEEEEEE---------C----SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEEC
T ss_pred             ccCCcEEeccccc---------C----CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEEC
Confidence            2334444444321         1    12234588999 99999988  889999999999887777643 356799999


Q ss_pred             CCCCcEEEeeCCCeEEEcC
Q 010470          492 GLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       492 ~~~~~l~s~~~dg~i~iwd  510 (510)
                      |+|++|++++.++.|.+||
T Consensus       304 ~dg~~l~~~~~~~~v~v~d  322 (349)
T 1jmx_B          304 KKGDKLYLGGTFNDLAVFN  322 (349)
T ss_dssp             SSSSCEEEESBSSEEEEEE
T ss_pred             CCCCEEEEecCCCeEEEEe
Confidence            9999999888899999996

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=1.5e-23  Score=225.94  Aligned_cols=275  Identities=9%  Similarity=0.050  Sum_probs=214.4

Q ss_pred             cccceEEEEEe-cCCCEEEEeeCCCeEEEEeCCCCcceeccccccc-ceeEEEEecCCCEEEEEeCCCeEE-EEEcCCCC
Q 010470          224 HEGGCASILFE-YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG-SVLDLAITHDNRSVIAASSSNNLY-VWDVNSGR  300 (510)
Q Consensus       224 h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-iwd~~~~~  300 (510)
                      |.+.+.+++|| |||++|++++ ++.|.+|++.++.... +..|.. .+..++|+ ||+.+++++.++.+. +|++.+++
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~  370 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK  370 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence            45579999999 9999999988 8899999998776543 566777 89999999 999999999888899 99998776


Q ss_pred             eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCC------
Q 010470          301 VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDG------  373 (510)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg------  373 (510)
                      ... +.+|...+..++|+| ++..|++++.++.|++||+.+++.......+ ..+.+++|+|||++|++++.++      
T Consensus       371 ~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~  448 (1045)
T 1k32_A          371 AEK-FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG  448 (1045)
T ss_dssp             EEE-CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             ceE-ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccC
Confidence            554 347888999999999 8999999999999999999999887776444 4579999999999998876544      


Q ss_pred             ----cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee-------Ee--e-------
Q 010470          374 ----NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG-------SL--R-------  433 (510)
Q Consensus       374 ----~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-------~~--~-------  433 (510)
                          .|++||+.+++ ...+..+. ..+.++.|+|+|++|++++.++...+|+........       .+  .       
T Consensus       449 ~~~~~i~l~d~~~g~-~~~l~~~~-~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (1045)
T 1k32_A          449 YVMQAIHVYDMEGRK-IFAATTEN-SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT  526 (1045)
T ss_dssp             CCEEEEEEEETTTTE-EEECSCSS-SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG
T ss_pred             CCCCeEEEEECCCCc-EEEeeCCC-cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCcc
Confidence                89999998887 55555554 678899999999999999988877777754332200       00  0       


Q ss_pred             ---------------cCC--------CeeecCceeEEEcCCCCEEEE-------------EcCCCeEEEEeCCCcceeec
Q 010470          434 ---------------ATG--------NRVASNWSRSCISPDESYVAA-------------GSADGSVYIWSISKADIVRT  477 (510)
Q Consensus       434 ---------------~~~--------~~~~~~~~~~~~s~~~~~l~~-------------~~~dg~i~iwd~~~~~~~~~  477 (510)
                                     ...        ......+..++++|||.++++             ....+.|++||+.+++....
T Consensus       527 ~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l  606 (1045)
T 1k32_A          527 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV  606 (1045)
T ss_dssp             GCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE
T ss_pred             ccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEe
Confidence                           000        001123456889999988875             12345789999988775332


Q ss_pred             ccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          478 LKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       478 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .    ..+.+++|||||+.|++++.+ .|++||
T Consensus       607 ~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d  634 (1045)
T 1k32_A          607 K----NNLTDLRLSADRKTVMVRKDD-GKIYTF  634 (1045)
T ss_dssp             E----EEEEEEEECTTSCEEEEEETT-SCEEEE
T ss_pred             e----cCcceEEECCCCCEEEEEcCC-cEEEEe
Confidence            2    568899999999999998866 788885

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=7.4e-23  Score=193.47  Aligned_cols=239  Identities=11%  Similarity=0.131  Sum_probs=191.9

Q ss_pred             ccceeEEEEecCCCEEEEEeC-------CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCC-EEEEEeCCCcEEEEE
Q 010470          267 LGSVLDLAITHDNRSVIAASS-------SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSR-HVVSAAYDRTLKVWD  338 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~s~~~dg~i~iwd  338 (510)
                      ...+..++|+|+++++++++.       ++.|.+||..+++....+.. ...+.++.|+| +++ +++++..++.|.+||
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEEEEe
Confidence            456789999999999988874       56899999999998888764 34577899999 565 555666689999999


Q ss_pred             CCCCeEeeeeeecC----------ceeEEEEcCCCCEEEEec--CCCcEEEEECCCCceeeeecccccccEEEEEEcCCC
Q 010470          339 LHKGYCVNTIIFHS----------NCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG  406 (510)
Q Consensus       339 ~~~~~~~~~~~~~~----------~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~  406 (510)
                      +.+++.+..+..+.          .+.+++|+|+|+.+++++  .++.|.+||+.+++....+.... ..+.++.|+|+|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~dg  196 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG-KMSTGLALDSEG  196 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC-TTCCCCEEETTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC-CccceEEECCCC
Confidence            99999888776643          268899999999887765  47889999999999888877443 558889999999


Q ss_pred             CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCcceeecccccCcCE
Q 010470          407 NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGSVYIWSISKADIVRTLKEHTAPV  485 (510)
Q Consensus       407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v  485 (510)
                      +++++++.++.+.+||+.+++....+..........+..++|+|+|+++++++. ++.|.+||+.+++.+..+..+.  .
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~  274 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--S  274 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--C
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--C
Confidence            999999999999999999999887776533322333455899999998776655 5899999999998887776543  2


Q ss_pred             EEEEEeCCCCcEEEee-CCCeEEEcC
Q 010470          486 LSCSWSGLGKPLASAD-KNGVVCVWT  510 (510)
Q Consensus       486 ~~~~~~~~~~~l~s~~-~dg~i~iwd  510 (510)
                      .+++|+|+|+++++++ .++.|.+||
T Consensus       275 ~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          275 LAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCCEEEEEECCCCeEEEEE
Confidence            5799999999665544 789999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=4e-22  Score=188.01  Aligned_cols=248  Identities=16%  Similarity=0.240  Sum_probs=175.0

Q ss_pred             cccccceEEEEEecCCCEEEEeeC---CCeEEEEeCCCCc--ceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEE
Q 010470          222 NAHEGGCASILFEYNSARLISGGQ---DKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWD  295 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd  295 (510)
                      ..+...+..++|+|+|+ |++++.   ++.|.+|++.++.  .+..+..+...+..++|+|+|++|++++ .++.|.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34567788999999999 555544   6899999997765  3444455777889999999999999888 678999999


Q ss_pred             cCC-CC--eeEeecC---------CCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEeee--eee--cCceeEEE
Q 010470          296 VNS-GR--VRHTLTG---------HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-KGYCVNT--IIF--HSNCNALA  358 (510)
Q Consensus       296 ~~~-~~--~~~~~~~---------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~--~~~--~~~i~~i~  358 (510)
                      +.. +.  .+..+..         +...+.+++|+| +++++++...++.|.+||+. ++.....  +..  ...+..++
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~  193 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV  193 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence            963 33  2233321         123488899999 66677777778899999998 5543322  222  23578899


Q ss_pred             EcCCCCEEEE-ecCCCcEEEEECCC--Cce--eeeecccc-----cccEEEEEEcCCCCEEE-EEecCCcEEEEEcCC--
Q 010470          359 FSMDGQTIFS-GHIDGNLRLWDIQT--GKL--LSEVAAHS-----LAAVTSISLSRSGNIIL-TSGRDNLHNLFDIRS--  425 (510)
Q Consensus       359 ~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~-----~~~i~~i~~~~~~~~l~-~~~~d~~i~i~d~~~--  425 (510)
                      |+|+|+++++ +..++.|.+|++..  ++.  ...+....     ...+..++|+|+|++|+ ++..++.|.+|++..  
T Consensus       194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g  273 (347)
T 3hfq_A          194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG  273 (347)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence            9999996665 56788999999874  443  22222221     13588999999999875 455689999999973  


Q ss_pred             -ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEE--eCCCccee
Q 010470          426 -LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGSVYIW--SISKADIV  475 (510)
Q Consensus       426 -~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iw--d~~~~~~~  475 (510)
                       ...+..+..+...    ...++|+|||++|++++. ++.|.+|  |..++++.
T Consensus       274 ~~~~~~~~~~~~~~----~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          274 HLTLIQQISTEGDF----PRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             CEEEEEEEECSSSC----CCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             cEEEeEEEecCCCC----cCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence             2444444433322    234899999998887765 4899999  44556554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=1.4e-21  Score=185.44  Aligned_cols=267  Identities=13%  Similarity=0.150  Sum_probs=180.9

Q ss_pred             CEEEEee----CCCeEEEEeC--CCCcceecccccccceeEEEEecCCCEEEEEeCC----CeEEEEEcCC--CC--eeE
Q 010470          238 ARLISGG----QDKSIKLWDT--NTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS----NNLYVWDVNS--GR--VRH  303 (510)
Q Consensus       238 ~~l~s~~----~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~--~~--~~~  303 (510)
                      .++++|+    .++.|.+|.+  .+++.......+...+..++|+|++++|++++.+    +.|.+|++..  +.  .+.
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~   93 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN   93 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence            3455553    4568999876  4455432222267778889999999999999875    7999999876  43  233


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEeeee----ee-----------cCceeEEEEcCCCCEEE
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGYCVNTI----IF-----------HSNCNALAFSMDGQTIF  367 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~----~~-----------~~~i~~i~~~~~~~~l~  367 (510)
                      ....+......+++   +++++++++ .++.|.+|++.....+..+    ..           ...+.+++|+|+|++++
T Consensus        94 ~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           94 TQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             EeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            34445566777777   455555554 6889999999754322211    11           11247899999999666


Q ss_pred             E-ecCCCcEEEEECCCCce------e------eeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceee--eE
Q 010470          368 S-GHIDGNLRLWDIQTGKL------L------SEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVC--GS  431 (510)
Q Consensus       368 ~-~~~dg~i~i~d~~~~~~------~------~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~--~~  431 (510)
                      + +..++.|.+|++.....      +      ..........+..++|+|+|+++++++ .++.|.+|++.++...  ..
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence            5 44588999998875431      1      122223336788999999999887777 6899999999876542  22


Q ss_pred             eecCCCeeecCceeEEEcCCCCEEEEEcC--CCeEEEEeCC--Ccc--eeecccccCcCEEEEEEeCCCCcEEEee-CCC
Q 010470          432 LRATGNRVASNWSRSCISPDESYVAAGSA--DGSVYIWSIS--KAD--IVRTLKEHTAPVLSCSWSGLGKPLASAD-KNG  504 (510)
Q Consensus       432 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg  504 (510)
                      +...... ......++|+|||++|++++.  ++.|.+|++.  +++  .+..+.. ...+.+++|+|+|++|++++ .++
T Consensus       251 ~~~~~~~-~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          251 VAADTVN-AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             EESCSSC-CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred             EecCCCC-CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence            2221111 112345899999999876655  4899999986  344  3444443 45678999999999888877 678


Q ss_pred             eEEEc
Q 010470          505 VVCVW  509 (510)
Q Consensus       505 ~i~iw  509 (510)
                      .|.+|
T Consensus       329 ~v~v~  333 (361)
T 3scy_A          329 VIQIF  333 (361)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            89986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=9.6e-22  Score=190.15  Aligned_cols=200  Identities=12%  Similarity=0.086  Sum_probs=156.2

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc----------cee-----cccccccceeEEEEecCCCEEE----EE
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS----------LSS-----TLYGCLGSVLDLAITHDNRSVI----AA  285 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~~~~~~~l~----~~  285 (510)
                      ...++.+++++++.++++++.++ ++||+.....          ...     ....+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44689999999999999999888 8888753110          000     0123456799999999999999    67


Q ss_pred             eCCCeEEEEEcCCC--------Ce---eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCc
Q 010470          286 SSSNNLYVWDVNSG--------RV---RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSN  353 (510)
Q Consensus       286 ~~d~~i~iwd~~~~--------~~---~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~  353 (510)
                      +.|+.|++||+.++        +.   ...+.+|...|.+++|+|..+.+|++++.||+|++||++++..+..... ...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            78999999998764        22   4556779999999999995589999999999999999998876655444 356


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc------cccEEEEEEcCCCCEEEEEe-cCC------cEEE
Q 010470          354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS------LAAVTSISLSRSGNIILTSG-RDN------LHNL  420 (510)
Q Consensus       354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~-~d~------~i~i  420 (510)
                      +.+++|+|+|++|++|+.||.|++||++ ++....+..+.      ...+.++.|++++.++++.+ .+|      .+++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i  273 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM  273 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence            9999999999999999999999999998 55555444321      13799999999888775533 333      3889


Q ss_pred             EEcCCc
Q 010470          421 FDIRSL  426 (510)
Q Consensus       421 ~d~~~~  426 (510)
                      |++++.
T Consensus       274 ~~l~~~  279 (434)
T 2oit_A          274 ALLPKK  279 (434)
T ss_dssp             EECCCT
T ss_pred             EEeccC
Confidence            999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=3.3e-21  Score=182.76  Aligned_cols=260  Identities=13%  Similarity=0.183  Sum_probs=180.6

Q ss_pred             cccceEEEEEecCCCEEEEeeCC----CeEEEEeCCC--Ccc--eecccccccceeEEEEecCCCEEEEEe-CCCeEEEE
Q 010470          224 HEGGCASILFEYNSARLISGGQD----KSIKLWDTNT--GSL--SSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVW  294 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw  294 (510)
                      |...+..++|+|+|++|++++.+    +.|.+|++..  +..  +.....+...+..+++  +++++++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            67788899999999999998876    7999998865  433  3333445556677777  888888777 57899999


Q ss_pred             EcCCCCeeEee------cC--------CCCceEEEEEecCCCCEEEE-EeCCCcEEEEECCCCeE--------------e
Q 010470          295 DVNSGRVRHTL------TG--------HTDKVCAVDVSKISSRHVVS-AAYDRTLKVWDLHKGYC--------------V  345 (510)
Q Consensus       295 d~~~~~~~~~~------~~--------~~~~v~~i~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~--------------~  345 (510)
                      ++.....+..+      .+        +...+.+++|+| +++++++ +..++.|.+|++.....              .
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            99754322211      11        123458899999 6765544 44588999998875431              1


Q ss_pred             eeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCCce--eeeeccc--ccccEEEEEEcCCCCEEEEEecC--CcE
Q 010470          346 NTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGKL--LSEVAAH--SLAAVTSISLSRSGNIILTSGRD--NLH  418 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d--~~i  418 (510)
                      ........+..++|+|+|+++++++ .++.|.+||+.++..  +..+...  ....+..++|+|+|++|+++..+  +.|
T Consensus       205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i  284 (361)
T 3scy_A          205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV  284 (361)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred             eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence            1222334588999999999887666 689999999987754  2222221  12457899999999998777665  899


Q ss_pred             EEEEcC--Cce--eeeEeecCCCeeecCceeEEEcCCCCEEEEEc-CCCeEEEEe--CCCcceeecc-cccCcCEEEEEE
Q 010470          419 NLFDIR--SLE--VCGSLRATGNRVASNWSRSCISPDESYVAAGS-ADGSVYIWS--ISKADIVRTL-KEHTAPVLSCSW  490 (510)
Q Consensus       419 ~i~d~~--~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd--~~~~~~~~~~-~~~~~~v~~~~~  490 (510)
                      .+|++.  ++.  .+..+.. .    .....++|+|+|++|++++ .++.|.+|+  ..+++..... ..+...+.|+.|
T Consensus       285 ~v~~~~~~~g~~~~~~~~~~-g----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~  359 (361)
T 3scy_A          285 AIFKVDETNGTLTKVGYQLT-G----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF  359 (361)
T ss_dssp             EEEEECTTTCCEEEEEEEEC-S----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred             EEEEEcCCCCcEEEeeEecC-C----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence            999996  344  3333333 2    1233489999999888877 678999965  4567665544 235567899998


Q ss_pred             e
Q 010470          491 S  491 (510)
Q Consensus       491 ~  491 (510)
                      .
T Consensus       360 ~  360 (361)
T 3scy_A          360 V  360 (361)
T ss_dssp             E
T ss_pred             c
Confidence            6

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=6.2e-23  Score=213.07  Aligned_cols=273  Identities=11%  Similarity=0.083  Sum_probs=193.5

Q ss_pred             EEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccccc---ceeEEEEecCCCEEEEEeC---------CCeEEEEEcC
Q 010470          230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG---SVLDLAITHDNRSVIAASS---------SNNLYVWDVN  297 (510)
Q Consensus       230 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~  297 (510)
                      +++|+|+|.+++++ .|+.|++||+.+++....+.++..   .+.+++|+|||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            67899999655554 699999999999987666655544   4899999999999998876         7899999999


Q ss_pred             CCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-------------------ceeEEE
Q 010470          298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-------------------NCNALA  358 (510)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~i~~i~  358 (510)
                      +++.+.... ....+..++|+| +++.|+++. ++.|++||+.++..........                   ...+++
T Consensus        99 ~g~~~~~~~-l~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A           99 NGEFVRGNE-LPRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TTEECCSSC-CCSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CCcccccee-cCcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence            887631111 135688899999 788888876 7899999998887654332211                   115899


Q ss_pred             EcCCCCEEEEecCCC----------------------------------cEEEEECCCCcee--eee------ccccccc
Q 010470          359 FSMDGQTIFSGHIDG----------------------------------NLRLWDIQTGKLL--SEV------AAHSLAA  396 (510)
Q Consensus       359 ~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~--~~~------~~~~~~~  396 (510)
                      |+|||+.|++++.|.                                  .|++||+.+++..  ..+      ..+. ..
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~  254 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD-YY  254 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC-EE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc-ce
Confidence            999999999877542                                  7889999887643  112      2233 67


Q ss_pred             EEEEEEcCCCCEEEEEecC----CcEEEEE----cCCceeeeEe----ecCCCeeec-CceeEEEcCCCCEEEE--EcCC
Q 010470          397 VTSISLSRSGNIILTSGRD----NLHNLFD----IRSLEVCGSL----RATGNRVAS-NWSRSCISPDESYVAA--GSAD  461 (510)
Q Consensus       397 i~~i~~~~~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~----~~~~~~~~~-~~~~~~~s~~~~~l~~--~~~d  461 (510)
                      +.+++|+||++++++....    ..|.+||    +.+++....+    ..+...+.. ....+.|+|||+.|+.  +..+
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  334 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD  334 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence            8999999998877764433    2488899    7777665444    233322220 0113789999996554  4445


Q ss_pred             C--eEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCC-----CeEEEc
Q 010470          462 G--SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKN-----GVVCVW  509 (510)
Q Consensus       462 g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iw  509 (510)
                      |  .|++|++.+++ ...+..+...+..+.++ +++.|+..+.+     +.+.+|
T Consensus       335 g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~  387 (719)
T 1z68_A          335 GYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY  387 (719)
T ss_dssp             SCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred             CceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence            5  57778887766 44555566678888877 78777766554     777777

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.89  E-value=5.4e-22  Score=190.68  Aligned_cols=275  Identities=13%  Similarity=0.030  Sum_probs=190.2

Q ss_pred             cceEEEEEecCCCEEEEeeCC---CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee
Q 010470          226 GGCASILFEYNSARLISGGQD---KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR  302 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  302 (510)
                      ..+.+++|||||++|+.+...   ..|.+||+.+++......++......+.|+|||++|+.++.++.|++||+.+++..
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence            347888999999998776543   47888999888765443333333344889999999999999999999999988876


Q ss_pred             EeecCCCCceEE-------------------EEEecCCCCEEEEE-----eCCCcEEEEECCCCeEeeeeeecCceeEEE
Q 010470          303 HTLTGHTDKVCA-------------------VDVSKISSRHVVSA-----AYDRTLKVWDLHKGYCVNTIIFHSNCNALA  358 (510)
Q Consensus       303 ~~~~~~~~~v~~-------------------i~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~  358 (510)
                      .....+......                   +.|+| ++..++.+     ..+..|.+||+.++...........+..+.
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~  194 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI  194 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence            655544443222                   23455 44444433     356789999999888766666666789999


Q ss_pred             EcC-CCCEEEEecCC------CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCc
Q 010470          359 FSM-DGQTIFSGHID------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSL  426 (510)
Q Consensus       359 ~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~  426 (510)
                      |+| ++..|+..+.+      ..|.+||+..+.............+..+.|+|+|++|+..+.+     +.|++||+.++
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            999 78877655433      4689999876553332221112468889999999987776544     34999999887


Q ss_pred             eeeeEeecCCCeeecCceeEEEcC-CCCEEEEEc----------------CCCeEEEEeCCCcceeecccccCc------
Q 010470          427 EVCGSLRATGNRVASNWSRSCISP-DESYVAAGS----------------ADGSVYIWSISKADIVRTLKEHTA------  483 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~~~~------  483 (510)
                      +.........      .. +.|+| +|+++++++                .++.|++||+.+++.. .+..+..      
T Consensus       275 ~~~~l~~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~  346 (396)
T 3c5m_A          275 ENEEVMVMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLD  346 (396)
T ss_dssp             CEEEEEECCS------EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBT
T ss_pred             CeEEeeeCCC------CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcccccc
Confidence            6544332221      12 67899 999888754                3478999999887643 3444443      


Q ss_pred             -----CEEEEEEeCCCCcEEEeeC-CCeEEEc
Q 010470          484 -----PVLSCSWSGLGKPLASADK-NGVVCVW  509 (510)
Q Consensus       484 -----~v~~~~~~~~~~~l~s~~~-dg~i~iw  509 (510)
                           .+..++|+|+|+.|+.++. ++...+|
T Consensus       347 ~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~  378 (396)
T 3c5m_A          347 GDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY  378 (396)
T ss_dssp             TBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             ccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence                 2567899999998877654 5555554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=2.6e-21  Score=183.58  Aligned_cols=270  Identities=13%  Similarity=0.112  Sum_probs=180.8

Q ss_pred             EEEEeeCC--CeEEEEeC--CCCccee--ccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEcC-CCCeeEeecCC-C
Q 010470          239 RLISGGQD--KSIKLWDT--NTGSLSS--TLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN-SGRVRHTLTGH-T  309 (510)
Q Consensus       239 ~l~s~~~d--g~i~iwd~--~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~-~  309 (510)
                      ++++|+..  +.|.+|++  .+++...  ... .....+..++|+|++++|++++.+ .|.+|++. +++........ .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            34555542  46777664  4554321  111 233467899999999999999888 99999997 77665433211 1


Q ss_pred             CceEEEEEecCCCC--EEEEEe-------------CCCcEEEEECC-CCeEeeeee-----ecCceeEEEEcCCCCEEEE
Q 010470          310 DKVCAVDVSKISSR--HVVSAA-------------YDRTLKVWDLH-KGYCVNTII-----FHSNCNALAFSMDGQTIFS  368 (510)
Q Consensus       310 ~~v~~i~~~~~~~~--~l~s~~-------------~dg~i~iwd~~-~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~  368 (510)
                      +.+.+++|+| +++  ++++++             .+|.+.+|++. ++.....+.     ....+.+++|+|+|+++++
T Consensus        83 g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           83 GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            2355688998 666  344553             68999999997 465544333     2345899999999998887


Q ss_pred             ec-CCCcEEEEECC-CCcee--eeeccc-ccccEEEEEEcCCCCEEEEEec-CCcEEEEEcC--Cceee---eEeecCCC
Q 010470          369 GH-IDGNLRLWDIQ-TGKLL--SEVAAH-SLAAVTSISLSRSGNIILTSGR-DNLHNLFDIR--SLEVC---GSLRATGN  437 (510)
Q Consensus       369 ~~-~dg~i~i~d~~-~~~~~--~~~~~~-~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~---~~~~~~~~  437 (510)
                      ++ .++.|++||+. +++..  ..+... +...+..++|+|+|+++++++. ++.|.+|++.  +++..   ..+.....
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  241 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence            65 46799999998 67643  223321 1267899999999999888764 6899999865  45432   12221111


Q ss_pred             ---eeec------CceeEE-EcCCCCEEEEEcCC-C-----eEEEEeCC-Ccceee---cccccCcCEEEEEEeC---CC
Q 010470          438 ---RVAS------NWSRSC-ISPDESYVAAGSAD-G-----SVYIWSIS-KADIVR---TLKEHTAPVLSCSWSG---LG  494 (510)
Q Consensus       438 ---~~~~------~~~~~~-~s~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~~~---~~  494 (510)
                         ....      ....++ |+|||++|++++.+ +     .|.+|++. +++...   .+..+...+..++|+|   +|
T Consensus       242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg  321 (365)
T 1jof_A          242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence               0000      234588 99999998876543 2     89999986 565443   2333444567899999   89


Q ss_pred             CcEEEeeCC-CeEEEcC
Q 010470          495 KPLASADKN-GVVCVWT  510 (510)
Q Consensus       495 ~~l~s~~~d-g~i~iwd  510 (510)
                      ++|++++.+ +.|.+|+
T Consensus       322 ~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             TEEEEECSSSCEEEEEE
T ss_pred             CEEEEEEcCCCeEEEEE
Confidence            999988764 8999985

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.89  E-value=6.8e-21  Score=179.82  Aligned_cols=268  Identities=12%  Similarity=0.141  Sum_probs=198.2

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceeccccc------ccceeEEEEecCCC
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGC------LGSVLDLAITHDNR  280 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~  280 (510)
                      ...++..+.++  .++|+|||+++++++          .++.|.+||..+++.+..+...      ......++|+|||+
T Consensus        43 ~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~  120 (361)
T 2oiz_A           43 FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK  120 (361)
T ss_dssp             EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred             EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC
Confidence            34556666555  899999999999886          3678999999998887776532      34567899999999


Q ss_pred             EEEEEeC--CCeEEEEEcCCCCeeEe-ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEeeee------ee
Q 010470          281 SVIAASS--SNNLYVWDVNSGRVRHT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYCVNTI------IF  350 (510)
Q Consensus       281 ~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~------~~  350 (510)
                      +|+++..  ++.|.+||+.+++.+.. +...  ....+.+.|.+...+++.+.||.+.+|+... ++.....      ..
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~  198 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV  198 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred             EEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence            9999874  58999999999988877 5532  2233566775557888899999999999865 5544221      11


Q ss_pred             cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee--eeecccc---------cccEEEEEEcCCCCEEEEEec-----
Q 010470          351 HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL--SEVAAHS---------LAAVTSISLSRSGNIILTSGR-----  414 (510)
Q Consensus       351 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~---------~~~i~~i~~~~~~~~l~~~~~-----  414 (510)
                      ......+.++|++..++..+.+|.|+++|+......  ..+....         ......++|+|+++.++++..     
T Consensus       199 ~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          199 KDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             TTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             CCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence            222333444677877777778899999998654321  2211100         011123789999888877653     


Q ss_pred             ------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc--ceeecccccCcCEE
Q 010470          415 ------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA--DIVRTLKEHTAPVL  486 (510)
Q Consensus       415 ------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~  486 (510)
                            .+.|.+||+.+++.+..+..+.  .    ..++|+|||++|++++. +.|.+||..++  +.+..+..+.....
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~--p----~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~  351 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVARIPGRD--A----LSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASL  351 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEEEECTT--C----CEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEE
T ss_pred             ccccCCCceEEEEECCCCcEEEEEecCC--e----eEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcE
Confidence                  3489999999999999987765  2    33899999999999887 99999999999  99988766777889


Q ss_pred             EEEEeCCCC
Q 010470          487 SCSWSGLGK  495 (510)
Q Consensus       487 ~~~~~~~~~  495 (510)
                      .++++|+|.
T Consensus       352 ~~~~~p~G~  360 (361)
T 2oiz_A          352 QVQFHPVGG  360 (361)
T ss_dssp             EEEECCCSC
T ss_pred             EEEecCCCC
Confidence            999999986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=5.5e-21  Score=180.24  Aligned_cols=272  Identities=13%  Similarity=0.053  Sum_probs=184.4

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccccc-cceEEEEEecCCCEEE-EeeCCCeEEEEeCCCCcceeccccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHE-GGCASILFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ++....++.+.+|+...         .+....+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++....+..+
T Consensus        14 ~v~~~~~~~v~~~d~~~---------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B           14 MIVTNYPNNLHVVDVAS---------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             EEEEETTTEEEEEETTT---------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             EEEeCCCCeEEEEECCC---------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence            44556678888887443         12333444332 2578999999998664 5557899999999998877666532


Q ss_pred             ------ccceeEEEEecCCCEEEEEeCC------------CeEEEEEcCCCCe---eEeecCCCCceEEEEEecCCCCEE
Q 010470          267 ------LGSVLDLAITHDNRSVIAASSS------------NNLYVWDVNSGRV---RHTLTGHTDKVCAVDVSKISSRHV  325 (510)
Q Consensus       267 ------~~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l  325 (510)
                            ...+.+++|+|+|+++++++.+            +.|.+||+.+++.   +..+. +...+.+++|+| ++. +
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-l  161 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-L  161 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-E
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC-CCc-E
Confidence                  2347899999999999999865            8999999988543   33444 334688899999 666 5


Q ss_pred             EEEeCCCcEEEEECCCCeEeeeeeecC-------------------------ceeEEEEcCCCCEEEEecCCC-cEEEEE
Q 010470          326 VSAAYDRTLKVWDLHKGYCVNTIIFHS-------------------------NCNALAFSMDGQTIFSGHIDG-NLRLWD  379 (510)
Q Consensus       326 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~i~~i~~~~~~~~l~~~~~dg-~i~i~d  379 (510)
                      ++++  +.|.+||+.+++.+..+....                         .+.++++++++.........+ .+..+|
T Consensus       162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            5544  349999999998877765442                         244566665542111100001 112244


Q ss_pred             CCCCceeeeecccccccEEEEEEcC-CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG  458 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  458 (510)
                      ..+++....-.......+.+++|+| +|++++++  ++.|.+||+.+++....+.....     ...++|+|+|++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT-----YYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC-----CCEEEECSSSSCEEEE
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC-----ccceEECCCCCEEEEe
Confidence            4433321111111225788999999 99999988  88999999999988777764332     2348999999999988


Q ss_pred             cCCCeEEEEeCCCcceeeccccc
Q 010470          459 SADGSVYIWSISKADIVRTLKEH  481 (510)
Q Consensus       459 ~~dg~i~iwd~~~~~~~~~~~~~  481 (510)
                      +.++.|.+||+.+++.+..+..+
T Consensus       313 ~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          313 GTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SBSSEEEEEETTTTEEEEEEECS
T ss_pred             cCCCeEEEEeccccceeeeeecC
Confidence            88999999999999887776543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=4.8e-22  Score=201.03  Aligned_cols=230  Identities=13%  Similarity=0.113  Sum_probs=171.5

Q ss_pred             ccceeEEEEecCCCEEEEEeC-CCeEEEEEcCCCCeeEeecCCC-CceEEEEEecCCCCEEEEEeC---CCcEEEEECCC
Q 010470          267 LGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSGRVRHTLTGHT-DKVCAVDVSKISSRHVVSAAY---DRTLKVWDLHK  341 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~---dg~i~iwd~~~  341 (510)
                      ..+|++++|+|||+.|++++. ||++.||++.++.... +..|. ..+.++.|+| + .++++++.   +....+|.+..
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEec
Confidence            567999999999999999886 9999999997665544 44454 6899999998 5 67777764   44455554322


Q ss_pred             ---CeEeeeeeecCceeEEEEcCCCCE-EEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC--
Q 010470          342 ---GYCVNTIIFHSNCNALAFSMDGQT-IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD--  415 (510)
Q Consensus       342 ---~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--  415 (510)
                         +... .+.........+|+|+|+. +++...++.+.+||+.+++.......+  .  .++.|+|||++|++++.+  
T Consensus        98 ~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~--~--~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           98 SRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP--G--FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             TSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES--S--CEEEEEEETTEEEEEEEEET
T ss_pred             cCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC--C--ceEEECCCCCEEEEEEEcCC
Confidence               2222 3333344556788888863 333444455669999888765444332  2  789999999999988776  


Q ss_pred             --CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC--eEEEEeCCCcceeecccccCcCEEEEE--
Q 010470          416 --NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG--SVYIWSISKADIVRTLKEHTAPVLSCS--  489 (510)
Q Consensus       416 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~--  489 (510)
                        +.|++||+.+++.. .+..+....    ..++|||||++|+++..+|  .|++||+.+++.. .+..|...+.+++  
T Consensus       173 ~~~~i~~~d~~~g~~~-~l~~~~~~~----~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~  246 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLR-VFDSGEGSF----SSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT  246 (582)
T ss_dssp             TEEEEEEEETTTCCCE-EECCSSCEE----EEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS
T ss_pred             CCeEEEEEcCCCCCce-EeecCCCcc----ccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc
Confidence              78999999887764 444444333    4489999999999888888  8999999998877 7777777676677  


Q ss_pred             ------EeCCCCcEEEeeCCCeEEEcC
Q 010470          490 ------WSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       490 ------~~~~~~~l~s~~~dg~i~iwd  510 (510)
                            |+|||.++++++.||.+++|+
T Consensus       247 ~~~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cccceeEcCCCcEEEEEEcCCcEEEEE
Confidence                  999998888999999999994

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=1.7e-21  Score=202.16  Aligned_cols=299  Identities=11%  Similarity=0.043  Sum_probs=195.5

Q ss_pred             CCceEEecccccccccccCCCccceeecccccc---ceEEEEEecCCCEEEEeeC---------CCeEEEEeCCCCccee
Q 010470          194 VDGVVRRSEEGAEFFAESTVPSTCKHKINAHEG---GCASILFEYNSARLISGGQ---------DKSIKLWDTNTGSLSS  261 (510)
Q Consensus       194 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~  261 (510)
                      .|+.+.+|+...         ..+...+.+|..   .|.+++|||||++|++++.         ++.|++||+.+++.+.
T Consensus        34 ~d~~i~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~  104 (719)
T 1z68_A           34 ADNNIVLYNIET---------GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR  104 (719)
T ss_dssp             TTSCEEEEESSS---------CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred             CCCCEEEEEcCC---------CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence            355666665332         223444445544   4999999999999998876         7899999999887631


Q ss_pred             cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-cCCCCce-----------------EEEEEecCCCC
Q 010470          262 TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-TGHTDKV-----------------CAVDVSKISSR  323 (510)
Q Consensus       262 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~i~~~~~~~~  323 (510)
                      ... ....+..++|+|||+.|+++. ++.|++|++.+++..... .++...|                 .++.|+| +++
T Consensus       105 ~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~  181 (719)
T 1z68_A          105 GNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGK  181 (719)
T ss_dssp             SSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSS
T ss_pred             cee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCC
Confidence            111 125688999999999999886 679999999888765433 2333222                 4899999 888


Q ss_pred             EEEEEeCCC----------------------------------cEEEEECCCCeEe--eee------e-ecCceeEEEEc
Q 010470          324 HVVSAAYDR----------------------------------TLKVWDLHKGYCV--NTI------I-FHSNCNALAFS  360 (510)
Q Consensus       324 ~l~s~~~dg----------------------------------~i~iwd~~~~~~~--~~~------~-~~~~i~~i~~~  360 (510)
                      .|++++.|.                                  .|.+||+.++...  ..+      . ....+..++|+
T Consensus       182 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  261 (719)
T 1z68_A          182 FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV  261 (719)
T ss_dssp             EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe
Confidence            888877552                                  7889999887642  111      1 12347899999


Q ss_pred             CCCCEEEEecCC----CcEEEEE----CCCCceeeeec---ccccccEE-----EEEEcCCCCEEEE--EecCC--cEEE
Q 010470          361 MDGQTIFSGHID----GNLRLWD----IQTGKLLSEVA---AHSLAAVT-----SISLSRSGNIILT--SGRDN--LHNL  420 (510)
Q Consensus       361 ~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~i~-----~i~~~~~~~~l~~--~~~d~--~i~i  420 (510)
                      ||++++++....    ..|.+||    +.+++....+.   ..+...+.     .+.|+|+|+.++.  +..+|  .|.+
T Consensus       262 pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~  341 (719)
T 1z68_A          262 TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY  341 (719)
T ss_dssp             SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred             CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence            998877764332    2488999    87776554442   22224454     7899999996554  44555  5677


Q ss_pred             EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCC--cce-eec----ccccCcCEEEE
Q 010470          421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISK--ADI-VRT----LKEHTAPVLSC  488 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~--~~~-~~~----~~~~~~~v~~~  488 (510)
                      ||+.++.. ..+......+    ..+.++ +++.|+..+.+     +.+.+|.+..  +.. ...    +.+|...+..+
T Consensus       342 ~~~~~~~~-~~lt~~~~~v----~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~  415 (719)
T 1z68_A          342 IKDTVENA-IQITSGKWEA----INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTA  415 (719)
T ss_dssp             ESSCSTTC-EECSCSSSCE----EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEE
T ss_pred             EECCCCce-EecccCceEE----EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEE
Confidence            77766653 3333222222    224555 77776665554     7788887654  321 122    22366678899


Q ss_pred             EEeCCCCcEEE-eeCC--CeEEEcC
Q 010470          489 SWSGLGKPLAS-ADKN--GVVCVWT  510 (510)
Q Consensus       489 ~~~~~~~~l~s-~~~d--g~i~iwd  510 (510)
                      .|+|++++++. ++.+  ..+.+||
T Consensus       416 ~~s~dg~~l~~~~s~~~~p~~~l~d  440 (719)
T 1z68_A          416 SFSDYAKYYALVCYGPGIPISTLHD  440 (719)
T ss_dssp             EECGGGSSEEEEECCBSSCEEEEEC
T ss_pred             EECCCCCEEEEEcCCCCCCeEEEEE
Confidence            99999998774 3332  3455654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=6.1e-21  Score=184.53  Aligned_cols=215  Identities=13%  Similarity=0.079  Sum_probs=158.4

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC----------CeeEe-----ecCCCCc
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG----------RVRHT-----LTGHTDK  311 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------~~~~~-----~~~~~~~  311 (510)
                      +.+++|+....       .....+..+++++++.++++++.++ +++|+....          .....     ...+...
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            46888865311       1234678899999999999999887 888875321          01110     1135678


Q ss_pred             eEEEEEecCCCCEEE----EEeCCCcEEEEECCCC--------eE---eeeeee-cCceeEEEEcCC-CCEEEEecCCCc
Q 010470          312 VCAVDVSKISSRHVV----SAAYDRTLKVWDLHKG--------YC---VNTIIF-HSNCNALAFSMD-GQTIFSGHIDGN  374 (510)
Q Consensus       312 v~~i~~~~~~~~~l~----s~~~dg~i~iwd~~~~--------~~---~~~~~~-~~~i~~i~~~~~-~~~l~~~~~dg~  374 (510)
                      |.+++|+| ++++|+    +++.|+.|++||+.++        +.   +..+.. ...|.+++|+|+ +.+|++++.||.
T Consensus        95 v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           95 IHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             EEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             ccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            99999999 788888    7888999999998654        22   222332 356999999997 889999999999


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee---ecCceeEEEcCC
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV---ASNWSRSCISPD  451 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~  451 (510)
                      |++||++++..+.....+. ..|.+++|+|+|++|++|+.||.|++||++ +.....+..+....   ...+..++|+++
T Consensus       174 v~iwD~~~~~~~~~~~~~~-~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~  251 (434)
T 2oit_A          174 IAVLQVTETVKVCATLPST-VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT  251 (434)
T ss_dssp             EEEEEESSSEEEEEEECGG-GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred             EEEEEcCCCcceeeccCCC-CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence            9999999987665555554 789999999999999999999999999998 55555554432211   124556899998


Q ss_pred             CCEEEEE-cCCC------eEEEEeCCCc
Q 010470          452 ESYVAAG-SADG------SVYIWSISKA  472 (510)
Q Consensus       452 ~~~l~~~-~~dg------~i~iwd~~~~  472 (510)
                      +.++++. +.+|      .+++|++.+.
T Consensus       252 ~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          252 YVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ceEEEEEccCCCccCCCCceEEEEeccC
Confidence            8887553 3343      3899998764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=3.3e-20  Score=175.11  Aligned_cols=257  Identities=13%  Similarity=0.166  Sum_probs=188.8

Q ss_pred             CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC----------CCeEEEEEcCCCCeeEeecCC------
Q 010470          245 QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS----------SNNLYVWDVNSGRVRHTLTGH------  308 (510)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~------  308 (510)
                      .|+.|.+||..+++.+..+..+..+  .++|+||++++++++.          ++.|.+||..+++.+..+...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4789999999999988887766555  8999999999999873          568999999999888777532      


Q ss_pred             CCceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeee-eeecCceeEEEEcCCC-CEEEEecCCCcEEEEECCC-C
Q 010470          309 TDKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNT-IIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQT-G  383 (510)
Q Consensus       309 ~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~-~  383 (510)
                      ......++++| ++++++++..  ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.+.||.+.+|+... +
T Consensus       107 g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          107 LNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             CCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             CCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence            34567799999 7888887763  68999999999988877 5443 23335677765 6777888899999999865 5


Q ss_pred             ceeee------ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee--eeEeecCC------CeeecCceeEEEc
Q 010470          384 KLLSE------VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV--CGSLRATG------NRVASNWSRSCIS  449 (510)
Q Consensus       384 ~~~~~------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~------~~~~~~~~~~~~s  449 (510)
                      +....      +...  .....+.++|++..++..+.++.+.++|+.....  ...+....      .........++++
T Consensus       185 ~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~  262 (361)
T 2oiz_A          185 KVASQSRSKQMFSVK--DDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH  262 (361)
T ss_dssp             SEEEEEECCCCSCTT--TSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred             cEeeeccccceEcCC--CCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence            54411      1111  1122334467777777778889999999875432  22221111      1111222237899


Q ss_pred             CCCCEEEEEcC-----------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          450 PDESYVAAGSA-----------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       450 ~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |+++.++++..           .+.|.+||+.+++.+.++..+.  +.+++|+|+|++|++++. +.|.+||
T Consensus       263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D  331 (361)
T 2oiz_A          263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD  331 (361)
T ss_dssp             TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred             cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence            99888777543           3489999999999999998776  899999999999998886 9999996

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=3.2e-20  Score=176.07  Aligned_cols=243  Identities=12%  Similarity=0.130  Sum_probs=171.1

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCC-CCcceecccc-cccceeEEEEecCCCE--EEEEe-------------
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTN-TGSLSSTLYG-CLGSVLDLAITHDNRS--VIAAS-------------  286 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~~~~-------------  286 (510)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++....... ..+.+.+++|+|+|++  +++++             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            33468899999999999999888 99999997 7765433221 1133567899999995  44443             


Q ss_pred             CCCeEEEEEcC-CCCeeEeec----CCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECC-CCeEe--eeeee---cCce
Q 010470          287 SSNNLYVWDVN-SGRVRHTLT----GHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLH-KGYCV--NTIIF---HSNC  354 (510)
Q Consensus       287 ~d~~i~iwd~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~--~~~~~---~~~i  354 (510)
                      .+|.+.+|++. +++....+.    .+...+.+++|+| +++++++++ .++.|.+||+. +++..  ..+..   ...+
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence            68899999997 466544443    2556799999999 777777665 36899999998 67643  23331   3458


Q ss_pred             eEEEEcCCCCEEEEec-CCCcEEEEECC--CCceee---eecc---c---ccc------cEEEEE-EcCCCCEEEEEecC
Q 010470          355 NALAFSMDGQTIFSGH-IDGNLRLWDIQ--TGKLLS---EVAA---H---SLA------AVTSIS-LSRSGNIILTSGRD  415 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~---~~~~---~---~~~------~i~~i~-~~~~~~~l~~~~~d  415 (510)
                      ..++|+|+|+++++++ .++.|.+|++.  +++...   .+..   .   +..      .+..++ |+|+|++|++++.+
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            9999999999988766 47899999765  455421   2221   1   001      588999 99999998877653


Q ss_pred             C------cEEEEEcC-CceeeeE---eecCCCeeecCceeEEEcC---CCCEEEEEcCC-CeEEEEeCCCc
Q 010470          416 N------LHNLFDIR-SLEVCGS---LRATGNRVASNWSRSCISP---DESYVAAGSAD-GSVYIWSISKA  472 (510)
Q Consensus       416 ~------~i~i~d~~-~~~~~~~---~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~d-g~i~iwd~~~~  472 (510)
                      .      .|.+|++. +++....   .......    ...++|+|   ||++|++++.+ +.|.+|++...
T Consensus       276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~----~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC----cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            3      89999996 5554331   2212211    22378999   89999998864 89999998765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.87  E-value=1.6e-19  Score=168.48  Aligned_cols=246  Identities=14%  Similarity=0.130  Sum_probs=187.8

Q ss_pred             cccceEEEEEecCCCEEEEeeCC------------------------CeEEEEeCCCCcceeccc-ccccceeEEEEecC
Q 010470          224 HEGGCASILFEYNSARLISGGQD------------------------KSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHD  278 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~  278 (510)
                      -.+.|.+++++|+|+++++.+.+                        +.|.+||..+++....+. ++...+..++++|+
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            34679999999999999888877                        479999999888766554 44567899999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCC-eeEee---------cCCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEeee
Q 010470          279 NRSVIAASSSNNLYVWDVNSGR-VRHTL---------TGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       279 ~~~l~~~~~d~~i~iwd~~~~~-~~~~~---------~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~  347 (510)
                      |+++++...++.|++|+..... .+..+         ..+.....+++++|.++.++++.+ .++.|.+|| .++..+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            9988888889999999976442 45555         244557899999985677777776 689999999 46777666


Q ss_pred             eeec-----------CceeEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeeccc-ccccEEEEEEcC------CCCE
Q 010470          348 IIFH-----------SNCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH-SLAAVTSISLSR------SGNI  408 (510)
Q Consensus       348 ~~~~-----------~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~------~~~~  408 (510)
                      +...           ..+..++++|+ +.++++...++.|++||..+++.+..+... ....+.+++|+|      +|+.
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~  260 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKP  260 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCE
Confidence            6432           22889999998 777778888999999999889888877532 225788999999      3333


Q ss_pred             EEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          409 ILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       409 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      .++...++.|.+||..+++.+..+..... .......++++|+|.++++...+++|++|++..
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~-~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRK-HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEECCSSS-CCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEcCCCC-ccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            33334456899999999998887742211 122344589999998888889999999999764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.87  E-value=4.1e-20  Score=189.99  Aligned_cols=287  Identities=11%  Similarity=0.018  Sum_probs=199.1

Q ss_pred             eeccccccceEEEEEecCCCEEEEe--eCCCeEEEEeCCCCcceeccccccccee---------EEEEe--cCCCE-EEE
Q 010470          219 HKINAHEGGCASILFEYNSARLISG--GQDKSIKLWDTNTGSLSSTLYGCLGSVL---------DLAIT--HDNRS-VIA  284 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~  284 (510)
                      ..+.+|...|..++|++++-++++.  +.++...||....+.....+..+...+.         ...|+  |||+. |+.
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            3567899999999999887666766  5588999998654555566666666655         66676  99998 776


Q ss_pred             EeC-CCeEEEEEcC--C-CCeeEeecC-----CCCceEEEEEecCCCCEEEEEeCC----------CcEEEEECCC----
Q 010470          285 ASS-SNNLYVWDVN--S-GRVRHTLTG-----HTDKVCAVDVSKISSRHVVSAAYD----------RTLKVWDLHK----  341 (510)
Q Consensus       285 ~~~-d~~i~iwd~~--~-~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~s~~~d----------g~i~iwd~~~----  341 (510)
                      ++. +..|++|++.  . +. ...+..     |...+.+++|+| +++.|++++.+          ..|++||+.+    
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence            654 5667777765  2 43 444554     667889999999 88888888766          5899999987    


Q ss_pred             --CeEeeee-eecCceeEEEEcCCCCEEEEecCC--------CcEEEEECC-CC--ceeeeecccccccEEEEEEcCCCC
Q 010470          342 --GYCVNTI-IFHSNCNALAFSMDGQTIFSGHID--------GNLRLWDIQ-TG--KLLSEVAAHSLAAVTSISLSRSGN  407 (510)
Q Consensus       342 --~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~-~~--~~~~~~~~~~~~~i~~i~~~~~~~  407 (510)
                        +...... .....+..++|+|||++|+.++.+        ..|++||+. ++  .....+...+...+..+.|+|||+
T Consensus       175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred             cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence              5544333 334557889999999999877644        379999998 56  133344333237899999999999


Q ss_pred             EEEEEecCC--cEEEEEcCCceeeeEeecCCCeee----cCceeEEEcCCCCEEEEEcCCCeEEEE--eCCCcceeeccc
Q 010470          408 IILTSGRDN--LHNLFDIRSLEVCGSLRATGNRVA----SNWSRSCISPDESYVAAGSADGSVYIW--SISKADIVRTLK  479 (510)
Q Consensus       408 ~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~  479 (510)
                      ++++++.++  .|.+||+.+++.......+.....    .....++|+|++.++++++. +.++||  |+.+++ +..+.
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~  332 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA  332 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence            888888888  566667666655443332221110    01235889999999999998 999999  555454 56677


Q ss_pred             ccCcCEEEE-EEeCCCCcEEEeeCCCeEEEc
Q 010470          480 EHTAPVLSC-SWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       480 ~~~~~v~~~-~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      .|...+..+ +++++.-.+++++.+....+|
T Consensus       333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            777777777 554443344455555544444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=3.1e-20  Score=192.79  Aligned_cols=267  Identities=13%  Similarity=0.057  Sum_probs=183.1

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccc-----eeEEEEecCCCEEEEEeCC---------CeEE
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS-----VLDLAITHDNRSVIAASSS---------NNLY  292 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i~  292 (510)
                      ...++.|+|||.+++++  ||.|++||+.+++....+.+|...     ..++.|||||++|++++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35688999999988886  999999999999877666666532     2448899999999998876         5677


Q ss_pred             EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-C------------------c
Q 010470          293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-S------------------N  353 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~------------------~  353 (510)
                      +||+.+++.. .+..|...+..++|+| +++.|+.+. ++.|++||+.++...+..... .                  .
T Consensus        96 ~~d~~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           96 IYDLNKRQLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEETTTTEEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEECCCCcEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            9999988754 4666788899999999 788888875 789999999887754432211 1                  1


Q ss_pred             eeEEEEcCCCCEEEEecCCC------------------------------------cEEEEECCC---Cc--eeeeecc-
Q 010470          354 CNALAFSMDGQTIFSGHIDG------------------------------------NLRLWDIQT---GK--LLSEVAA-  391 (510)
Q Consensus       354 i~~i~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~~-  391 (510)
                      ...+.|+|||+.|+.++.|.                                    .|++||+.+   +.  ....+.. 
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence            13589999999998764221                                    488899988   63  2223332 


Q ss_pred             ----cccccEEEEEEcCCCCEEEEEec----CCcEEEEEcCCce----ee--eEe--ecCCCeeec-CceeEEEcCCCCE
Q 010470          392 ----HSLAAVTSISLSRSGNIILTSGR----DNLHNLFDIRSLE----VC--GSL--RATGNRVAS-NWSRSCISPDESY  454 (510)
Q Consensus       392 ----~~~~~i~~i~~~~~~~~l~~~~~----d~~i~i~d~~~~~----~~--~~~--~~~~~~~~~-~~~~~~~s~~~~~  454 (510)
                          .+...+..+.|+|||+.++....    +..|.+||+.+++    +.  ..+  ..+...+.. ....+.|+|||+.
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~  332 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS  332 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence                12367899999999997665543    2379999998876    21  111  122222210 0123689999998


Q ss_pred             EE-EEcC-C--CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          455 VA-AGSA-D--GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       455 l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      |+ ..+. +  ..|++||+.++....... ....|..+.+ +|++.|+..
T Consensus       333 l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~~i~f~  380 (740)
T 4a5s_A          333 FYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSDYLYYI  380 (740)
T ss_dssp             EEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSSEEEEE
T ss_pred             EEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCCEEEEE
Confidence            76 5543 3  468888988766544333 3445655542 345555443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.86  E-value=9e-20  Score=170.81  Aligned_cols=269  Identities=10%  Similarity=0.081  Sum_probs=193.9

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  305 (510)
                      ..|.++.|++++..++..+.++.++.|   .+.....+..+...+.+++|+|++++++++..++.|.+||..+++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            457788899988888877888999999   34555566667777899999999997778888999999999888766555


Q ss_pred             cCCCCceEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeEeeeee---ecCceeEEEEcCCCCEEEEecC------C
Q 010470          306 TGHTDKVCAVDVSKISSRHVVSAAYD----RTLKVWDLHKGYCVNTII---FHSNCNALAFSMDGQTIFSGHI------D  372 (510)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~------d  372 (510)
                      ..+...+.+++++| +++++++...+    +.|.+||..++.....+.   ....+.+++++|+|+++++...      .
T Consensus        83 ~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           83 VSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             ECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             eCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence            45677899999998 67777776655    689999998776543332   2235889999999988776653      3


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE-EecCCcEEEEEcCC-ceeeeEee-----cCCCeeecCcee
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT-SGRDNLHNLFDIRS-LEVCGSLR-----ATGNRVASNWSR  445 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i~i~d~~~-~~~~~~~~-----~~~~~~~~~~~~  445 (510)
                      +.|..||..+++...... .. ..+..++|+|+|+.+++ .+.++.|.+||+.+ +.....+.     ....  ......
T Consensus       162 ~~l~~~~~~~~~~~~~~~-~~-~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~--~~~~~~  237 (333)
T 2dg1_A          162 GGVYYVSPDFRTVTPIIQ-NI-SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG--HEGPDS  237 (333)
T ss_dssp             EEEEEECTTSCCEEEEEE-EE-SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS--SSEEEE
T ss_pred             ceEEEEeCCCCEEEEeec-CC-CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC--CCCCCc
Confidence            567777776555433222 22 46889999999986654 45678999999963 33221110     0010  012344


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCc------CEEEEEEeCCCCcEEEeeCC
Q 010470          446 SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA------PVLSCSWSGLGKPLASADKN  503 (510)
Q Consensus       446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~~~d  503 (510)
                      ++++++|+++++...++.|.+||. +++.+..+..+..      .+.+++|+|++..|+.++.+
T Consensus       238 i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          238 CCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             eEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            899999998888877889999997 5666655544332      68899999998777665554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=2e-18  Score=157.87  Aligned_cols=244  Identities=12%  Similarity=0.215  Sum_probs=182.7

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc------ccccceeEEEEe-cCCCEEEEEeC-CCeEEE
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY------GCLGSVLDLAIT-HDNRSVIAASS-SNNLYV  293 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~-d~~i~i  293 (510)
                      .+|...+.+++++++|.++++.+.++.|.+||.. +.....+.      ++...+.+++++ +++.++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4567789999999999988888889999999987 55544443      244578899995 66665555533 789999


Q ss_pred             EEcCCCCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEe
Q 010470          294 WDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSG  369 (510)
Q Consensus       294 wd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~  369 (510)
                      || .+++.+..+. .+...+.++++.| +++++++...++.|.+||.. +..+..+...   ..+.+++++|+|+++++.
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            99 6677776664 3446789999998 67777777778999999964 5555555432   358999999999988888


Q ss_pred             cCCCcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCC-cEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470          370 HIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDN-LHNLFDIRSLEVCGSLRATGNRVASNWSRSC  447 (510)
Q Consensus       370 ~~dg~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  447 (510)
                      ..++.|++||. .++.+..+.... ...+.+++++|+|+++++...++ .|.+||. +++.+..+..+...  .....++
T Consensus       182 ~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~--~~~~~i~  257 (286)
T 1q7f_A          182 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKH--AQCFDVA  257 (286)
T ss_dssp             GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCC--SCEEEEE
T ss_pred             CCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCC--CcceeEE
Confidence            88899999997 566666664431 25789999999999888888776 9999996 45555555543221  1233589


Q ss_pred             EcCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470          448 ISPDESYVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       448 ~s~~~~~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      ++|+|+++++ +.+++|++|++....+
T Consensus       258 ~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          258 LMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             EETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             ECCCCcEEEE-CCCCeEEEEEcccccc
Confidence            9999987777 5689999999865443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=2e-18  Score=157.91  Aligned_cols=239  Identities=13%  Similarity=0.221  Sum_probs=178.7

Q ss_pred             cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec------CCCCceEEEEEecCCCCEEEEEeC-CCcEEE
Q 010470          264 YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT------GHTDKVCAVDVSKISSRHVVSAAY-DRTLKV  336 (510)
Q Consensus       264 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~i  336 (510)
                      .++...+.++++++++.++++...++.|.+||.. ++....+.      ++...+.++++.+.++.++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3455678999999999988888889999999976 66666553      244578899995435666665543 789999


Q ss_pred             EECCCCeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc-cccccEEEEEEcCCCCEEEEEe
Q 010470          337 WDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA-HSLAAVTSISLSRSGNIILTSG  413 (510)
Q Consensus       337 wd~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~  413 (510)
                      || .++..+..+...  ..+.+++++|+|+++++...++.|.+||. .++.+..+.. .....+.+++++|+|+++++..
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            99 567766666432  35899999999998888888899999996 5666655542 2225689999999999888888


Q ss_pred             cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC-eEEEEeCCCcceeecccccC--cCEEEEEE
Q 010470          414 RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG-SVYIWSISKADIVRTLKEHT--APVLSCSW  490 (510)
Q Consensus       414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~--~~v~~~~~  490 (510)
                      .++.|.+||.. +..+..+.....  ......++++++|+++++...++ .|.+|+. +++.+..+..+.  ..+.++++
T Consensus       183 ~~~~i~~~~~~-g~~~~~~~~~g~--~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~  258 (286)
T 1q7f_A          183 RAHCVKVFNYE-GQYLRQIGGEGI--TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL  258 (286)
T ss_dssp             GGTEEEEEETT-CCEEEEESCTTT--SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred             CCCEEEEEcCC-CCEEEEEccCCc--cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence            89999999974 444455543321  12234589999999998888776 9999995 566666665443  34789999


Q ss_pred             eCCCCcEEEeeCCCeEEEcC
Q 010470          491 SGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       491 ~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|+|+++++ +.|+.|++|+
T Consensus       259 ~~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          259 MDDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             ETTTEEEEE-ETTTEEEEEE
T ss_pred             CCCCcEEEE-CCCCeEEEEE
Confidence            999987666 6799999995

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=6.9e-19  Score=164.20  Aligned_cols=240  Identities=13%  Similarity=0.128  Sum_probs=183.9

Q ss_pred             ccceeEEEEecCCCEEEEEeCC------------------------CeEEEEEcCCCCeeEeec-CCCCceEEEEEecCC
Q 010470          267 LGSVLDLAITHDNRSVIAASSS------------------------NNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKIS  321 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~  321 (510)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++....+. ++...+.+++++| +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            4678999999999988887777                        479999998898876664 4456789999998 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCe-Eeeeeee----------cCceeEEEEcC-CCCEEEEec-CCCcEEEEECCCCceeee
Q 010470          322 SRHVVSAAYDRTLKVWDLHKGY-CVNTIIF----------HSNCNALAFSM-DGQTIFSGH-IDGNLRLWDIQTGKLLSE  388 (510)
Q Consensus       322 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~----------~~~i~~i~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~  388 (510)
                      ++++++...++.|++||..... .+..+..          ...+..++++| +|.++++.+ .++.|++|| .++..+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            7788888889999999986442 4444421          12488999999 888888886 689999999 57777776


Q ss_pred             ecccc---------cccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC------CC
Q 010470          389 VAAHS---------LAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP------DE  452 (510)
Q Consensus       389 ~~~~~---------~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~  452 (510)
                      +....         ...+..++++|+ +.++++...++.|++||..+++.+..+......  .....++++|      +|
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~pg~~~~~~g  258 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG--RNVFAISYIPGFLFAVNG  258 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT--TCEEEEEEETTEEEEEEC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC--CCcceeeecCCEEEEeCC
Confidence            65322         134899999998 777777788899999999988887777533211  1223477788      34


Q ss_pred             CEEEEEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          453 SYVAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       453 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +..++...++.|++|++.+++.+..+.   .+...+.+++++|+|.++++...++.|++|+
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            333334445689999999999888873   5677799999999998888888899999985

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.84  E-value=1.3e-17  Score=165.22  Aligned_cols=286  Identities=14%  Similarity=0.136  Sum_probs=205.6

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCC--CCcceecccccccceeEEEEe----cCCCEEEEEe-CCC
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTN--TGSLSSTLYGCLGSVLDLAIT----HDNRSVIAAS-SSN  289 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~-~d~  289 (510)
                      ...++... ..+.++.|||||+++++++.|+.|.+||+.  +++.+..+.... ....++|+    |||+++++++ .++
T Consensus       189 v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~  266 (567)
T 1qks_A          189 IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPP  266 (567)
T ss_dssp             EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             EEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCC
Confidence            34444332 246789999999999999999999999995  777777776533 45789999    6999988887 458


Q ss_pred             eEEEEEcCCCCeeEeecC----------CCC-ceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE--eeeeeecCceeE
Q 010470          290 NLYVWDVNSGRVRHTLTG----------HTD-KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC--VNTIIFHSNCNA  356 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~----------~~~-~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~i~~  356 (510)
                      .|.++|..+.+.+..+..          |.. .+..+..++....++++...+|.|.++|..+...  +..+.......+
T Consensus       267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d  346 (567)
T 1qks_A          267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD  346 (567)
T ss_dssp             EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred             eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccC
Confidence            999999999998877652          112 5778888885566677777789999999976543  233333445778


Q ss_pred             EEEcCCCCEEEEec-CCCcEEEEECCCCceeeeecc-c---ccc-cEEEEEEcCCCCEEE-EEe-cCCcEEEEEcCC---
Q 010470          357 LAFSMDGQTIFSGH-IDGNLRLWDIQTGKLLSEVAA-H---SLA-AVTSISLSRSGNIIL-TSG-RDNLHNLFDIRS---  425 (510)
Q Consensus       357 i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~---~~~-~i~~i~~~~~~~~l~-~~~-~d~~i~i~d~~~---  425 (510)
                      +.|+|+|++++++. .++.|.++|+.+++.+..+.. .   +.+ .+. + ++|++..++ ++. .++.|.++|..+   
T Consensus       347 ~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~  424 (567)
T 1qks_A          347 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGH  424 (567)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             ceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence            99999999887654 678999999999988776654 2   111 222 2 578755444 443 468999999987   


Q ss_pred             ----ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-------CCeEEEEeCCCc-----ce-eeccc--------c
Q 010470          426 ----LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-------DGSVYIWSISKA-----DI-VRTLK--------E  480 (510)
Q Consensus       426 ----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~-----~~-~~~~~--------~  480 (510)
                          .+.+..+........    .+.++|+++++++...       .++|.|||+.+.     .. +..+.        .
T Consensus       425 ~~~~~kvv~~i~~~g~g~~----~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~  500 (567)
T 1qks_A          425 PDNAWKILDSFPALGGGSL----FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE  500 (567)
T ss_dssp             TTTBTSEEEEEECSCSCCC----CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred             ccccCEEEEEEecCCCCCE----EEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCC
Confidence                677777776543211    1678999999998763       358999999877     21 12221        1


Q ss_pred             cCcCEEEEEEeCCCCcEEEee-----CCCeEEEcC
Q 010470          481 HTAPVLSCSWSGLGKPLASAD-----KNGVVCVWT  510 (510)
Q Consensus       481 ~~~~v~~~~~~~~~~~l~s~~-----~dg~i~iwd  510 (510)
                      ....+..+.|+|+|+.+..+.     .++.|.|+|
T Consensus       501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            234688999999999776653     368888875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.84  E-value=3.7e-18  Score=159.03  Aligned_cols=255  Identities=10%  Similarity=0.099  Sum_probs=189.2

Q ss_pred             CCCeEEEEeCCCCcceeccc------ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEe
Q 010470          245 QDKSIKLWDTNTGSLSSTLY------GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVS  318 (510)
Q Consensus       245 ~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  318 (510)
                      .++.|.+||..+++....+.      .......++.+. +++.+++...++.|.+||..+++.+..+. .......++++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~   92 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL   92 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence            48899999999988765542      122345677774 44555555567899999999999988885 34678899998


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC------ceeEEEEcCCCCEEEEec-CCCcEEEEECCCCceeeeecc
Q 010470          319 KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS------NCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGKLLSEVAA  391 (510)
Q Consensus       319 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  391 (510)
                      + ++..+++...++.|.+||+.+++....+....      .+..+++ .++..+++.. .++.|.+||+.+++....+..
T Consensus        93 ~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~  170 (328)
T 3dsm_A           93 S-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI  170 (328)
T ss_dssp             E-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred             C-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence            8 56555554479999999999999888887666      6778888 3444444443 488999999999998887765


Q ss_pred             cccccEEEEEEcCCCCEEEEEecC----------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470          392 HSLAAVTSISLSRSGNIILTSGRD----------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD  461 (510)
Q Consensus       392 ~~~~~i~~i~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  461 (510)
                      .  ..+..+.++|+|++++++..+          +.|.+||..+++....+......   ....++++|++++|+++.. 
T Consensus       171 g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~---~p~~la~~~d~~~lyv~~~-  244 (328)
T 3dsm_A          171 G--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGD---WPSEVQLNGTRDTLYWINN-  244 (328)
T ss_dssp             S--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTC---CCEEEEECTTSCEEEEESS-
T ss_pred             C--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCC---CceeEEEecCCCEEEEEcc-
Confidence            4  456789999999987777655          78999999998887766543221   2344899999999888765 


Q ss_pred             CeEEEEeCCCcceeec--ccccCcCEEEEEEeCC-CCcEEEe----eCCCeEEEcC
Q 010470          462 GSVYIWSISKADIVRT--LKEHTAPVLSCSWSGL-GKPLASA----DKNGVVCVWT  510 (510)
Q Consensus       462 g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~s~----~~dg~i~iwd  510 (510)
                       .|.+||..+++....  +..+...+.+++++|+ +..+++.    ..++.|.+||
T Consensus       245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             -EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence             899999988876422  2222457899999995 4455555    5688999986

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.83  E-value=1e-16  Score=147.35  Aligned_cols=276  Identities=9%  Similarity=0.025  Sum_probs=195.5

Q ss_pred             ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee-cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 010470          221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG  299 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  299 (510)
                      +..+...+.+++++++|.++++...++.|.+||.. +.... ....+...+.+++++++|.++++...++.|..|+.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            34456789999999999988877778899999988 55432 222345678999999999988877778899999976 4


Q ss_pred             Cee-EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee--cCceeEEEEcCCCCEEEEecCCCcEE
Q 010470          300 RVR-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF--HSNCNALAFSMDGQTIFSGHIDGNLR  376 (510)
Q Consensus       300 ~~~-~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~  376 (510)
                      +.. ..+......+.++.+.+ ++.++++...++.|.+||. ++........  ...+.+++++++|..+++...++.|.
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             cEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            432 22223456788999988 6777777777889999998 5554332221  24588999999998888777788999


Q ss_pred             EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEE
Q 010470          377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA  456 (510)
Q Consensus       377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  456 (510)
                      .||. +++............+.+++++++|.++++...++.|.+||. ++.... +....  ....+..++++++|++++
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~--~~~~~~~i~~~~~g~l~v  240 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPT--PNARPHAITAGAGIDLWF  240 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS--TTCCEEEEEECSTTCEEE
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCC--CCCCceeEEECCCCCEEE
Confidence            9998 666544322222256889999999998777777889999999 655432 22111  112344588999999777


Q ss_pred             EEcCCCeEEEEeCCCcceee-cccccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470          457 AGSADGSVYIWSISKADIVR-TLKEHTAPVLSCSWSGLGKPLASADKNGVVC  507 (510)
Q Consensus       457 ~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  507 (510)
                      +...++.|.+||. ++.... .+..+...+.++++ ++|.+.++.+.++.++
T Consensus       241 ~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~  290 (299)
T 2z2n_A          241 TEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK  290 (299)
T ss_dssp             EETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred             eccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence            7767889999998 454322 13345567899999 8887666655444333

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.83  E-value=1.3e-17  Score=153.30  Aligned_cols=245  Identities=10%  Similarity=0.044  Sum_probs=179.8

Q ss_pred             ceeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          217 CKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      ....+..+.....+++|+|+|+ +++++..++.|..|+..++  ...+..+...+.+++++|+|+++++...++.|.+||
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            3445556667789999999998 7888888999999999877  556666778899999999999877777778999999


Q ss_pred             cCCCCeeEeecCC----CCceEEEEEecCCCCEEEE----Ee-------------CCCcEEEEECCCCeEeeeeeecCce
Q 010470          296 VNSGRVRHTLTGH----TDKVCAVDVSKISSRHVVS----AA-------------YDRTLKVWDLHKGYCVNTIIFHSNC  354 (510)
Q Consensus       296 ~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~s----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~i  354 (510)
                      ..+++........    ...+.++++.| +++++++    |+             ..+.|..++.. +...........+
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~  174 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP  174 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC
Confidence            9888755443221    23466799998 7787776    32             13467777765 5443333334557


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEECC-CCce---eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee
Q 010470          355 NALAFSMDGQTIFSGHIDGNLRLWDIQ-TGKL---LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG  430 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  430 (510)
                      +.++|+|+|+.+++.+.++.|.+||+. ++..   ...+ ......+.+++++++|+++++.  ++.|.+||.. ++...
T Consensus       175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~  250 (296)
T 3e5z_A          175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELG  250 (296)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEE
T ss_pred             ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEE
Confidence            899999999998888888999999986 4544   2333 2233567789999999876666  7899999986 66666


Q ss_pred             EeecCCCeeecCceeEEE-cCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470          431 SLRATGNRVASNWSRSCI-SPDESYVAAGSADGSVYIWSISKADIV  475 (510)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~  475 (510)
                      .+..+.. .    ..++| +|+++.|++++.++ +.-++..+..+.
T Consensus       251 ~~~~~~~-~----~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~  290 (296)
T 3e5z_A          251 RVLTPQT-T----SNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE  290 (296)
T ss_dssp             EEECSSC-C----CEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred             EEECCCC-c----eeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence            6665544 2    33778 68999999888764 666676665543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.83  E-value=4.7e-18  Score=160.06  Aligned_cols=252  Identities=12%  Similarity=0.162  Sum_probs=173.0

Q ss_pred             ceEEEEEecCCCEEEEee---------CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---C--eEE
Q 010470          227 GCASILFEYNSARLISGG---------QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---N--NLY  292 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~--~i~  292 (510)
                      .+....+  ||++++...         .++.|.+||+.+++... +    ..+..+.|+|||++|+.++.+   +  .|+
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            4666777  888876642         26789999999876533 3    567889999999999887753   3  488


Q ss_pred             EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC---------------------------CCcEEEEECCCCeEe
Q 010470          293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY---------------------------DRTLKVWDLHKGYCV  345 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~---------------------------dg~i~iwd~~~~~~~  345 (510)
                      +|++.+++.......+ . +..+.|+| +++.|+.++.                           ...|.+||+.++..+
T Consensus        89 ~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           89 VADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            8888887765554433 3 99999999 7777776653                           257999999988874


Q ss_pred             eeeeecCceeEEEEcCCCCEEEEecCCC---------cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-
Q 010470          346 NTIIFHSNCNALAFSMDGQTIFSGHIDG---------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-  415 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-  415 (510)
                      ..+... .+..+.|+|+| +++++..++         .|+++|  +++. ..+..+  ..+..+  +|+|++|+.++.+ 
T Consensus       166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~--~~~~~~--spdg~~l~~~~~~~  236 (347)
T 2gop_A          166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK--VSFYAV--DSDGERILLYGKPE  236 (347)
T ss_dssp             EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE--ESEEEE--EECSSCEEEEECCS
T ss_pred             eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC--cceeeE--CCCCCEEEEEEccc
Confidence            444444 78899999999 777765432         355555  5443 333332  344444  9999988877644 


Q ss_pred             -------CcEEEEEcCCceeeeEeecCCCeeecCcee-EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEE
Q 010470          416 -------NLHNLFDIRSLEVCGSLRATGNRVASNWSR-SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS  487 (510)
Q Consensus       416 -------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  487 (510)
                             ..|.+||  +++.......+...    +.. +.|+ +| ++++++.++.+++| +.+++.... ..+...|.+
T Consensus       237 ~~~~~~~~~l~~~d--~~~~~~l~~~~~~~----~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~  306 (347)
T 2gop_A          237 KKYMSEHNKLYIYD--GKEVMGILDEVDRG----VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMG  306 (347)
T ss_dssp             SSCCCSSCEEEEEC--SSCEEESSTTCCSE----EEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEE
T ss_pred             cCCccccceEEEEC--CCceEeccccCCcc----cCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEe
Confidence                   3677888  44443332222222    232 6788 88 88899999999999 886655433 335778999


Q ss_pred             EEEeCCCCcEEEeeCCCeE-EEc
Q 010470          488 CSWSGLGKPLASADKNGVV-CVW  509 (510)
Q Consensus       488 ~~~~~~~~~l~s~~~dg~i-~iw  509 (510)
                      ++|+|  .++++++.++.. .+|
T Consensus       307 ~~~s~--~~~~~~~~~~~~~~l~  327 (347)
T 2gop_A          307 FDVDE--IVVYLKETATRLRELF  327 (347)
T ss_dssp             EEESS--SEEEEEECSSSCCEEE
T ss_pred             eeeeC--cEEEEEcCCCChHHhe
Confidence            99999  566777666543 444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.82  E-value=2.2e-17  Score=151.68  Aligned_cols=234  Identities=11%  Similarity=0.070  Sum_probs=172.7

Q ss_pred             ecccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 010470          261 STLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL  339 (510)
Q Consensus       261 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~  339 (510)
                      ..+..+.....+++|+|+++ +++++..++.|..|+..++  ...+..+...+.+++++| ++.++++...++.|.+||.
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECS
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcC
Confidence            33444556678999999998 6777778899999998877  566666778899999999 7777777766789999999


Q ss_pred             CCCeEeeeeeec-----CceeEEEEcCCCCEEEE----ec-------------CCCcEEEEECCCCceeeeecccccccE
Q 010470          340 HKGYCVNTIIFH-----SNCNALAFSMDGQTIFS----GH-------------IDGNLRLWDIQTGKLLSEVAAHSLAAV  397 (510)
Q Consensus       340 ~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~i  397 (510)
                      .++.........     ..++.++++|+|+++++    |+             ..+.|..|+.. ++.. .+.... ..+
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~-~~~  174 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDR-VKP  174 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCC-SSE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCC-CCC
Confidence            888754433221     24678999999998887    33             13567777765 4433 333332 678


Q ss_pred             EEEEEcCCCCEEEEEecCCcEEEEEcC-Ccee---eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc
Q 010470          398 TSISLSRSGNIILTSGRDNLHNLFDIR-SLEV---CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD  473 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  473 (510)
                      ..++|+|+|+.+++.+.++.|.+|++. ++..   ...+...    ......++++++|+++++.  ++.|.+|+.. ++
T Consensus       175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~  247 (296)
T 3e5z_A          175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE----PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD  247 (296)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS----SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred             ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC----CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence            899999999998777788999999987 4443   2233111    1223348999999977666  7889999976 77


Q ss_pred             eeecccccCcCEEEEEE-eCCCCcEEEeeCCCeEEE
Q 010470          474 IVRTLKEHTAPVLSCSW-SGLGKPLASADKNGVVCV  508 (510)
Q Consensus       474 ~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~i~i  508 (510)
                      .+..+..+.. +++++| +|+++.|++++.+|..++
T Consensus       248 ~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          248 ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             EEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             EEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            7777777776 899999 589988988888765543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=7.3e-19  Score=168.33  Aligned_cols=254  Identities=12%  Similarity=0.046  Sum_probs=176.2

Q ss_pred             EEeCCCCcceecccccccceeE-----EEEecCCCEEEEEeC-CC--eEEEEEcCCCCeeEeecCCCCceEEEEEecCCC
Q 010470          251 LWDTNTGSLSSTLYGCLGSVLD-----LAITHDNRSVIAASS-SN--NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISS  322 (510)
Q Consensus       251 iwd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  322 (510)
                      .+|..++..+..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++......++...+..+.|+| ++
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg   92 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DD   92 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TS
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CC
Confidence            4566777777777777665555     889999999999887 66  488899998888777777766666778999 88


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeE--EEEcCCCCEEEEe----------------------cCCCcEEE
Q 010470          323 RHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNA--LAFSMDGQTIFSG----------------------HIDGNLRL  377 (510)
Q Consensus       323 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~--i~~~~~~~~l~~~----------------------~~dg~i~i  377 (510)
                      ..|+.++.++.|++||+.+++.......+.. +..  ..++|++..++..                      ..++.|++
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            8999999899999999999987766655544 222  3458999988742                      24468999


Q ss_pred             EECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecC------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470          378 WDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRD------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP  450 (510)
Q Consensus       378 ~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  450 (510)
                      ||+.+++...... +. ..+..+.|+| +|+.|+....+      ..|.++|+..+............   .+..+.|+|
T Consensus       173 ~d~~~g~~~~l~~-~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~---~~~~~~~sp  247 (388)
T 3pe7_A          173 VDLKTGESTVILQ-EN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGE---SCTHEFWVP  247 (388)
T ss_dssp             EETTTCCEEEEEE-ES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTE---EEEEEEECT
T ss_pred             EECCCCceEEeec-CC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCc---ccccceECC
Confidence            9999887544433 33 6789999999 99988877653      37888887765443322222111   123478999


Q ss_pred             CCCEEEEEcC-C----CeEEEEeCCCccee--ecccccCcC---EEEEEEeCCCCcEEEe---------eCCCeEEEcC
Q 010470          451 DESYVAAGSA-D----GSVYIWSISKADIV--RTLKEHTAP---VLSCSWSGLGKPLASA---------DKNGVVCVWT  510 (510)
Q Consensus       451 ~~~~l~~~~~-d----g~i~iwd~~~~~~~--~~~~~~~~~---v~~~~~~~~~~~l~s~---------~~dg~i~iwd  510 (510)
                      ||+.|+..+. +    +.|++||+.+++..  ..+.++...   ...++|+|||+.|+..         +.+..|++||
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d  326 (388)
T 3pe7_A          248 DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN  326 (388)
T ss_dssp             TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred             CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence            9997765443 2    24999999988743  233321110   1123799999988754         4566788885

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.82  E-value=1.6e-17  Score=154.61  Aligned_cols=254  Identities=10%  Similarity=0.029  Sum_probs=187.7

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEee
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~  305 (510)
                      ....+.++ ++..+++...++.|.+||..+++.+.++. .......+++++++. ++++. .++.|.+||..+++....+
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEE
Confidence            45777775 34555666668999999999999888774 356788999999985 55555 8899999999999887776


Q ss_pred             cCCC-----CceEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC-------
Q 010470          306 TGHT-----DKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID-------  372 (510)
Q Consensus       306 ~~~~-----~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-------  372 (510)
                      ....     .....+++ . ++.++++.. .++.|.+||+.+++.+..+.....+..+.++|+|++++++..+       
T Consensus       122 ~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~  199 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG  199 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred             EcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence            5333     14556666 3 455555544 4899999999999998888877778899999999977776654       


Q ss_pred             ---CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470          373 ---GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       373 ---g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                         +.|.+||..+++....+.......+..++|+|+++.++++..  .|.+||..+++..........  ......++++
T Consensus       200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vd  275 (328)
T 3dsm_A          200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVN  275 (328)
T ss_dssp             BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC--SSCEEEEEEC
T ss_pred             cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC--CCceEEEEEc
Confidence               789999999998877776543247899999999999988765  899999988765321111110  1233458999


Q ss_pred             C-CCCEEEEE----cCCCeEEEEeCCCcceeecccccCcCEEEEEEe
Q 010470          450 P-DESYVAAG----SADGSVYIWSISKADIVRTLKEHTAPVLSCSWS  491 (510)
Q Consensus       450 ~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  491 (510)
                      | ++.++++.    ..++.|.+||.. ++.+..+... .....++|-
T Consensus       276 p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~~  320 (328)
T 3dsm_A          276 PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCWK  320 (328)
T ss_dssp             TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEEE
T ss_pred             CCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEEe
Confidence            9 56666666    578999999988 8888887642 334666663

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.82  E-value=1.6e-17  Score=150.07  Aligned_cols=245  Identities=12%  Similarity=0.099  Sum_probs=191.2

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceecccccc-cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC-CceE
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCL-GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT-DKVC  313 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~  313 (510)
                      .+++|++++.|+.|.+||..+|+.+..+..+. ..+.++.++|+|++++  +.++.|..||. +++.+..+..+. ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46789999999999999999999998888765 4789999999999888  45778999998 899999988653 5788


Q ss_pred             EEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeeeeeec-------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 010470          314 AVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTIIFH-------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL  385 (510)
Q Consensus       314 ~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~  385 (510)
                      ++.+.+ +++++++.+. ++.|..+|. +|+.+..+...       ..+..+.+.++|+++++...++.|..||.. |+.
T Consensus        81 ~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           81 TARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             ccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            889988 8888888877 788888886 68777776532       235567889999999999999999999987 999


Q ss_pred             eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe--eecCceeEEEcCCCCEEEEEcCC--
Q 010470          386 LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR--VASNWSRSCISPDESYVAAGSAD--  461 (510)
Q Consensus       386 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d--  461 (510)
                      +..+...  ..+.++.+.++|+++++++.++.|..+|..+++.+..+......  .......+...++|.++++.+..  
T Consensus       158 ~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~  235 (276)
T 3no2_A          158 LNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHD  235 (276)
T ss_dssp             EEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTC
T ss_pred             EEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcc
Confidence            9888765  45667888999999999999999999999999998888643211  11224457788999998887421  


Q ss_pred             ------CeEEEEeC-CCcceeeccccc--CcCEEEE
Q 010470          462 ------GSVYIWSI-SKADIVRTLKEH--TAPVLSC  488 (510)
Q Consensus       462 ------g~i~iwd~-~~~~~~~~~~~~--~~~v~~~  488 (510)
                            +..+++.+ .+++.+..+..+  -+.+.++
T Consensus       236 ~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~  271 (276)
T 3no2_A          236 REAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI  271 (276)
T ss_dssp             TTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred             ccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence                  23455555 467777776543  2344444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=6.6e-19  Score=182.86  Aligned_cols=237  Identities=11%  Similarity=0.094  Sum_probs=164.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCc-----eEEEEEecCCCCEEEEEeCC---------CcE
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK-----VCAVDVSKISSRHVVSAAYD---------RTL  334 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----v~~i~~~~~~~~~l~s~~~d---------g~i  334 (510)
                      ...++.|+|||.+++++  |+.|++||+.+++....+.+|...     ...+.|+| +++.|+.++.+         +.+
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEE
Confidence            45689999999888886  899999999999988878777643     23478899 88888888765         667


Q ss_pred             EEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccE-----------------
Q 010470          335 KVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAV-----------------  397 (510)
Q Consensus       335 ~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i-----------------  397 (510)
                      .+||+.+++..........+...+|+|||+.|+.+. ++.|++||+.++.............+                 
T Consensus        95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            899999998765444456689999999999998885 68999999988775443222211112                 


Q ss_pred             EEEEEcCCCCEEEEEecCC------------------------------------cEEEEEcCC---ce--eeeEeecCC
Q 010470          398 TSISLSRSGNIILTSGRDN------------------------------------LHNLFDIRS---LE--VCGSLRATG  436 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~~~d~------------------------------------~i~i~d~~~---~~--~~~~~~~~~  436 (510)
                      .++.|||||+.|+..+.|.                                    .|++||+.+   +.  ....+....
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~  253 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence            3589999999998875332                                    467788877   52  112222100


Q ss_pred             C--eeecCceeEEEcCCCCEEEEEcC----CCeEEEEeCCCcc----ee--ecc--cccCcCEE-----EEEEeCCCCcE
Q 010470          437 N--RVASNWSRSCISPDESYVAAGSA----DGSVYIWSISKAD----IV--RTL--KEHTAPVL-----SCSWSGLGKPL  497 (510)
Q Consensus       437 ~--~~~~~~~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~----~~--~~~--~~~~~~v~-----~~~~~~~~~~l  497 (510)
                      .  .....+..++|+|||+.++....    +..|++||+.+++    +.  ..+  ..|...|.     .++|+|||+.|
T Consensus       254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l  333 (740)
T 4a5s_A          254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF  333 (740)
T ss_dssp             HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred             cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence            0  01122445899999997665532    3479999999887    22  222  33554444     78999999977


Q ss_pred             E-Eee-CCCe--EEEc
Q 010470          498 A-SAD-KNGV--VCVW  509 (510)
Q Consensus       498 ~-s~~-~dg~--i~iw  509 (510)
                      + ..+ .+|.  |++|
T Consensus       334 ~~~~s~~~G~~~l~~~  349 (740)
T 4a5s_A          334 YKIISNEEGYRHICYF  349 (740)
T ss_dssp             EEEEECTTSCEEEEEE
T ss_pred             EEEEEcCCCceEEEEE
Confidence            6 554 4554  5544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.81  E-value=7.5e-17  Score=159.73  Aligned_cols=273  Identities=12%  Similarity=0.051  Sum_probs=199.1

Q ss_pred             ecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC--CCCeeEeecCCCCc
Q 010470          234 EYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN--SGRVRHTLTGHTDK  311 (510)
Q Consensus       234 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~  311 (510)
                      ++.+.++++...++.|.++|..+++.+.++.. ...+..+.|+|||+++++++.++.|.+||+.  +++.+..+... ..
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~  241 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SE  241 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CC
Confidence            34455677788899999999999998887764 3356789999999999999999999999995  78888777753 34


Q ss_pred             eEEEEEe----cCCCCEEEEEe-CCCcEEEEECCCCeEeeeeeec------------CceeEEEEcCCCCEEE-EecCCC
Q 010470          312 VCAVDVS----KISSRHVVSAA-YDRTLKVWDLHKGYCVNTIIFH------------SNCNALAFSMDGQTIF-SGHIDG  373 (510)
Q Consensus       312 v~~i~~~----~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~------------~~i~~i~~~~~~~~l~-~~~~dg  373 (510)
                      ...++|+    | +++++++++ .+++|.++|..+.+.+..+...            ..+..+..++++..++ ....+|
T Consensus       242 P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g  320 (567)
T 1qks_A          242 ARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  320 (567)
T ss_dssp             EEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence            6789999    5 666665554 5699999999999888877532            1467788888766544 556779


Q ss_pred             cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeEeec-CCCeeecCceeEEEcCC
Q 010470          374 NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRA-TGNRVASNWSRSCISPD  451 (510)
Q Consensus       374 ~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~  451 (510)
                      .|.++|....+.+............++.|+|+|+++++++ .++.|.++|+.+++....+.. ...+...... ..++|+
T Consensus       321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~-~~~~p~  399 (567)
T 1qks_A          321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA-NFVHPT  399 (567)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE-EEEETT
T ss_pred             eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce-eeECCC
Confidence            9999998776543332222225678899999999887765 578999999999998877765 3333321111 125887


Q ss_pred             CCEE-EEEc-CCCeEEEEeCCC-------cceeecccccCcCEEEEEEeCCCCcEEEeeC-------CCeEEEcC
Q 010470          452 ESYV-AAGS-ADGSVYIWSISK-------ADIVRTLKEHTAPVLSCSWSGLGKPLASADK-------NGVVCVWT  510 (510)
Q Consensus       452 ~~~l-~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------dg~i~iwd  510 (510)
                      +..+ +++. .++.|.++|..+       .+.+.++......-..+..+|++++|.+...       .+.|.+||
T Consensus       400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            5544 4443 468999999987       5667777654434355788999998887653       34777765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=1.4e-16  Score=149.05  Aligned_cols=252  Identities=10%  Similarity=0.044  Sum_probs=177.9

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC----CeEE
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS----NNLY  292 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~  292 (510)
                      ....+.++...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++|+|+|+++++...+    +.|.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence            445566677788999999999988888889999999998887654443566789999999999987777666    6899


Q ss_pred             EEEcCCCCeeEeec--CCCCceEEEEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC
Q 010470          293 VWDVNSGRVRHTLT--GHTDKVCAVDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ  364 (510)
Q Consensus       293 iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~  364 (510)
                      +||..++.....+.  .+...+.++.++| ++.++++...      .+.|..||..++...........+..++|+|+|+
T Consensus       116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          116 AATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred             EEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence            99988777553333  2456789999999 6777666553      3667777776655444333334588999999998


Q ss_pred             EEE-EecCCCcEEEEECCC-Cceeeee------cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470          365 TIF-SGHIDGNLRLWDIQT-GKLLSEV------AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG  436 (510)
Q Consensus       365 ~l~-~~~~dg~i~i~d~~~-~~~~~~~------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  436 (510)
                      .++ +.+.++.|.+||+.+ +.....+      .......+..++++++|+++++...++.|.+||. +++.+..+..+.
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~  273 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG  273 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC
Confidence            665 455678999999864 3332211      1111146888999999998888888899999998 455555554332


Q ss_pred             Ce--eecCceeEEEcCCCCEEEEEcCCC------eEEEEeCC
Q 010470          437 NR--VASNWSRSCISPDESYVAAGSADG------SVYIWSIS  470 (510)
Q Consensus       437 ~~--~~~~~~~~~~s~~~~~l~~~~~dg------~i~iwd~~  470 (510)
                      ..  .......++|+|++..|++++.++      .|+.+++.
T Consensus       274 ~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          274 RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            20  001234588999987777666553      45555544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.80  E-value=5.6e-17  Score=146.83  Aligned_cols=241  Identities=9%  Similarity=-0.004  Sum_probs=171.0

Q ss_pred             ceEEEEEecCCCEEE-EeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470          227 GCASILFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  305 (510)
                      ...+++++++|++++ +.+.++.|.+|+..++........+...+.+++++++|+++++.. ++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678999999999777 557789999999876554332233445778999999999655555 889999997765433222


Q ss_pred             cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 010470          306 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK  384 (510)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  384 (510)
                      ......+.++++.+ ++.++++...++.|.+|+..+......... ...+.+++++++|+++++...++.|.+||.....
T Consensus       104 ~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          104 FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            22336788999998 677777777788999998765443322222 2357899999999977777778899999987665


Q ss_pred             eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeE
Q 010470          385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV  464 (510)
Q Consensus       385 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i  464 (510)
                      ......... ..+.+++++++|.++++...++.|.+||.............    ......++++++|+++++...++.|
T Consensus       183 ~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          183 QVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG----LNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             EEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCS----CSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             eEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCC----CCCceeEEECCCCCEEEEECCCCEE
Confidence            443322222 67899999999988887778889999998765432211111    1223458999999988898999999


Q ss_pred             EEEeCCCcce
Q 010470          465 YIWSISKADI  474 (510)
Q Consensus       465 ~iwd~~~~~~  474 (510)
                      ++|++...+.
T Consensus       258 ~~~~~~~~~~  267 (270)
T 1rwi_B          258 VKLTSLEHHH  267 (270)
T ss_dssp             EEECCCGGGS
T ss_pred             EEEcCCCccc
Confidence            9999876554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=1.2e-17  Score=171.68  Aligned_cols=246  Identities=15%  Similarity=0.057  Sum_probs=167.2

Q ss_pred             eeeccccccceE---------EEEEe--cCCCE-EEEeeC-CCeEEEEeCC--C-Ccceecccc-----cccceeEEEEe
Q 010470          218 KHKINAHEGGCA---------SILFE--YNSAR-LISGGQ-DKSIKLWDTN--T-GSLSSTLYG-----CLGSVLDLAIT  276 (510)
Q Consensus       218 ~~~~~~h~~~v~---------~~~~s--~~~~~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~  276 (510)
                      ...+..|...+.         ...|+  |||+. |+.++. +..|.+|++.  + +. ...+..     |...+.+++|+
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s  138 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL  138 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE
T ss_pred             cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC
Confidence            445555655555         55565  99998 766554 5667777776  3 43 344444     66788999999


Q ss_pred             cCCCEEEEEeCC----------CeEEEEEcCC------CCeeEeec-CCCCceEEEEEecCCCCEEEEEeCC--------
Q 010470          277 HDNRSVIAASSS----------NNLYVWDVNS------GRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYD--------  331 (510)
Q Consensus       277 ~~~~~l~~~~~d----------~~i~iwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~d--------  331 (510)
                      |||+.|++++.+          ..|++||+.+      +.. ..+. .+...+..+.|+| +++.|+.++.+        
T Consensus       139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTC
T ss_pred             CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCC
Confidence            999999998876          5899999987      544 4455 5667888899999 88888877654        


Q ss_pred             CcEEEEECC-CC---eEeeeeee-cCceeEEEEcCCCCEEEEecCCC--cEEEEECCCCceeeeeccccccc--------
Q 010470          332 RTLKVWDLH-KG---YCVNTIIF-HSNCNALAFSMDGQTIFSGHIDG--NLRLWDIQTGKLLSEVAAHSLAA--------  396 (510)
Q Consensus       332 g~i~iwd~~-~~---~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~--------  396 (510)
                      ..|.+||+. ++   ........ ...+..+.|+|||+++++++.+|  .|++||+.+++.......+. ..        
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~~~~p~w~~~  295 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREE-EFAGPLWTPG  295 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSS-BSSCCCCSTT
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccc-cccCcccccc
Confidence            479999998 56   44444444 35688999999999888888888  67777776666543333221 11        


Q ss_pred             EEEEEEcCCCCEEEEEecCCcEEEE--EcCCceeeeEeecCCCeeecCceeEEEcCCCCE--EEEEcCCC--eEEEEeCC
Q 010470          397 VTSISLSRSGNIILTSGRDNLHNLF--DIRSLEVCGSLRATGNRVASNWSRSCISPDESY--VAAGSADG--SVYIWSIS  470 (510)
Q Consensus       397 i~~i~~~~~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~~~~~dg--~i~iwd~~  470 (510)
                      +.+++|+|++.++++++. +.++||  |+.++. ...+..+...+.    .+ +++++..  +++++.+.  .|++||+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~----~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~  368 (662)
T 3azo_A          296 MRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWA----AT-LTVSGTRAVGVAASPRTAYEVVELDTV  368 (662)
T ss_dssp             CCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEE----EE-EEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred             CceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEE----EE-EecCCCEEEEEEcCCCCCCEEEEEECC
Confidence            567899999999999988 998998  555555 445544433332    23 1444443  44445454  46666766


Q ss_pred             Ccce
Q 010470          471 KADI  474 (510)
Q Consensus       471 ~~~~  474 (510)
                      +++.
T Consensus       369 ~g~~  372 (662)
T 3azo_A          369 TGRA  372 (662)
T ss_dssp             TCCE
T ss_pred             CCce
Confidence            6654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.79  E-value=2e-15  Score=138.69  Aligned_cols=275  Identities=10%  Similarity=0.009  Sum_probs=193.8

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee-cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470          223 AHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      .....+.+++++++|.++++...++.|.+||.. ++... .+......+.++++++++.++++...++.|..||.. ++.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            345678999999999988887778999999988 55433 222334678999999999977777778899999987 654


Q ss_pred             eE-eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee-e-ecCceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          302 RH-TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-I-FHSNCNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       302 ~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                      .. .+......+.++++.+ ++.++++...++.|..||.. +...... . ....+.++++.++|+.+++...++.|..|
T Consensus        95 ~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            32 2222446788999988 67777777668899999987 5544221 1 12458899999999977777777899999


Q ss_pred             ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470          379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG  458 (510)
Q Consensus       379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  458 (510)
                      |. +++............+.+++++++|.++++....+.|.+||. ++...... ...  .......++++++|+++++.
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~--~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-IPT--PNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSS--TTCCEEEEEECSTTCEEEEE
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-CCC--CCCCceEEEECCCCCEEEec
Confidence            98 665443222222257899999999988777777788999998 44433321 111  11223458899999977777


Q ss_pred             cCCCeEEEEeCCCccee-ecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          459 SADGSVYIWSISKADIV-RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       459 ~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ..++.|..|+. ++... ..+......+.+++++++|.+.++.. + .|..+
T Consensus       248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred             cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence            77789999998 44432 22333445688999999998666554 4 55544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.79  E-value=6.2e-17  Score=146.18  Aligned_cols=212  Identities=12%  Similarity=0.103  Sum_probs=173.5

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCC-CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--Cce
Q 010470          278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHT-DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNC  354 (510)
Q Consensus       278 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i  354 (510)
                      .+++|++++.++.|++||..+|+.+..+..+. ..+.++.+.| ++++++  +.++.|..||. +++.+..+..+  ..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            46788999999999999998999999998766 4788999999 788777  34788999999 89999888875  357


Q ss_pred             eEEEEcCCCCEEEEecC-CCcEEEEECCCCceeeeecccc-----cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee
Q 010470          355 NALAFSMDGQTIFSGHI-DGNLRLWDIQTGKLLSEVAAHS-----LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV  428 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~  428 (510)
                      .++.+.|+|+++++.+. ++.|..+|. +|+.+..+....     ...+..+.+.++|+++++...++.|..||.. ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            88999999999999877 788888885 788777665321     1345567889999999999999999999998 888


Q ss_pred             eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccC------cCEEEEEEeCCCCcEEEe
Q 010470          429 CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT------APVLSCSWSGLGKPLASA  500 (510)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~  500 (510)
                      +..+.....+.     .+.+.++|+++++++.+++|..||..+|+.+..+..+.      ..+.+++..++|..+++.
T Consensus       158 ~w~~~~~~~~~-----~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          158 LNSVKLSGTPF-----SSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEEECSSCCC-----EEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EEEEECCCCcc-----ceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            88887653332     26778999999999989999999999999988875432      237888999999887776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.78  E-value=8.3e-17  Score=145.70  Aligned_cols=234  Identities=9%  Similarity=-0.043  Sum_probs=166.2

Q ss_pred             ceeEEEEecCCCEEE-EEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470          269 SVLDLAITHDNRSVI-AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  347 (510)
                      ...+++++++|++++ +.+.++.|.+|+..++........+...+.++++.+ ++.++++.. ++.|.+||....... .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~-~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT-V  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE-E
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe-e
Confidence            678899999999666 446788999999765543322233445678899988 666666655 889999998765432 2


Q ss_pred             ee-ec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          348 II-FH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       348 ~~-~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      +. .. ..+.+++++|+|+.+++...++.|.+|+..+.......... ...+.+++++|+|+++++...++.|.+||...
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc-CCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            22 22 45889999999998888777889999986555433222222 24678899999999877777788999999887


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGV  505 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  505 (510)
                      ...........    .....++++++|.++++...++.|.+|+............+...+.+++++|+|+++++...++.
T Consensus       181 ~~~~~~~~~~~----~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~  256 (270)
T 1rwi_B          181 NNQVVLPFTDI----TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR  256 (270)
T ss_dssp             CCEEECCCSSC----CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE
T ss_pred             CceEeecccCC----CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE
Confidence            65433222111    23345899999988888888889999998765443332234457899999999998888888999


Q ss_pred             EEEcC
Q 010470          506 VCVWT  510 (510)
Q Consensus       506 i~iwd  510 (510)
                      |.+|+
T Consensus       257 v~~~~  261 (270)
T 1rwi_B          257 VVKLT  261 (270)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99885

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.78  E-value=1.6e-17  Score=171.13  Aligned_cols=243  Identities=10%  Similarity=0.027  Sum_probs=165.7

Q ss_pred             ccccceEEEEEecCCCEEE-----EeeCCCeEEEEeCCCCcceecccccccce--eEEEEecCCCEEEEEeCCCe-----
Q 010470          223 AHEGGCASILFEYNSARLI-----SGGQDKSIKLWDTNTGSLSSTLYGCLGSV--LDLAITHDNRSVIAASSSNN-----  290 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~-----s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~-----  290 (510)
                      +|...+.+++|||||++||     .|+.+..|++||+.+++.+..  .+...+  ..++|+|||+.|+.++.+..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            5666799999999999998     444557899999999886511  122222  68999999999999998766     


Q ss_pred             --------EEEEEcCCCC----eeEeecCCCCceEEEEEecCCCCEEEEEeCCC----cEEEEECCCCeEeeeeeecCce
Q 010470          291 --------LYVWDVNSGR----VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR----TLKVWDLHKGYCVNTIIFHSNC  354 (510)
Q Consensus       291 --------i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~i  354 (510)
                              |++|++.++.    .+.....+...+.++.|+| ++++|+.++.++    .|.+||..++............
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce
Confidence                    9999998876    3333344566789999999 677777666555    7788877666544433333445


Q ss_pred             eEEEEcCCCCEEEEec---CCCcEEEEECCCCce--eeeecccc-cccEEEEEEcCCCCEEEEEecCCcEEEEEcC-Cce
Q 010470          355 NALAFSMDGQTIFSGH---IDGNLRLWDIQTGKL--LSEVAAHS-LAAVTSISLSRSGNIILTSGRDNLHNLFDIR-SLE  427 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~~~  427 (510)
                      ....+ ++|.+++.+.   .++.|.+||+.++..  ...+..+. ...+.++.|+ ++.++++...|+..++|.+. ++.
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  352 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK  352 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            55555 5666444443   357899999987653  23333332 3568888888 67788888889988777654 344


Q ss_pred             eeeEeecC-CCeeecCceeEEEcCCCCEEEEE----cCCCeEEEEeCCCcce
Q 010470          428 VCGSLRAT-GNRVASNWSRSCISPDESYVAAG----SADGSVYIWSISKADI  474 (510)
Q Consensus       428 ~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~  474 (510)
                      ....+..+ ...+    ..++++|++..++..    ...++|++||+.+++.
T Consensus       353 ~~~~l~~~~~~~v----~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          353 PVRTVQLPGVGAA----SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEECCCSSSSEE----CCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             eeEEecCCCCeEE----EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            44444333 2222    235678998877633    2357899999987753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=1e-16  Score=165.63  Aligned_cols=245  Identities=12%  Similarity=0.069  Sum_probs=172.4

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCC-----eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCe-------
Q 010470          223 AHEGGCASILFEYNSARLISGGQDK-----SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN-------  290 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------  290 (510)
                      +|...+.+++|||||++|+.++.++     .|++||+.+++....... ...+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            4555789999999999998776543     899999999987653222 223678999999999999987765       


Q ss_pred             ---------EEEEEcCCCCe----eEeecCCCCceEEEEEecCCCCEEEEEeC-----CCcEEEEECCC------Ce-Ee
Q 010470          291 ---------LYVWDVNSGRV----RHTLTGHTDKVCAVDVSKISSRHVVSAAY-----DRTLKVWDLHK------GY-CV  345 (510)
Q Consensus       291 ---------i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~-~~  345 (510)
                               |++|++.++..    +.....|...+..+.|+| ++++|+.++.     +..|.+||+.+      +. ..
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                     99999988762    222233556688999999 7777776654     56899999976      42 34


Q ss_pred             eeeeecCceeEEEEcCCCCEEEEecC----CCcEEEEECCCCce--eeeeccccc-ccEEEEEEcCCCCEEEEEecCCc-
Q 010470          346 NTIIFHSNCNALAFSMDGQTIFSGHI----DGNLRLWDIQTGKL--LSEVAAHSL-AAVTSISLSRSGNIILTSGRDNL-  417 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~-  417 (510)
                      ..+..+.......|+|+|..|+..+.    ++.|.+||+.++..  ...+..+.. ..+.++.|++++.++++...++. 
T Consensus       280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            44444433223358889988776554    33699999987642  344444432 36888999988888888888874 


Q ss_pred             -EEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc----CCCeEEEEeCCCcc
Q 010470          418 -HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS----ADGSVYIWSISKAD  473 (510)
Q Consensus       418 -i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~  473 (510)
                       |.+|++.+++....+..+...    +..++++|++..++...    ..+.|+.||+.+++
T Consensus       360 ~l~~~~~~~g~~~~~l~~~~~~----v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          360 TLQLHDLATGALLKIFPLEVGS----VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTTCCEEEEECCCSSE----EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCCCCEEEecCCCCce----EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence             666787677766666554333    23477889987666432    34789999998876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.77  E-value=2e-15  Score=142.38  Aligned_cols=268  Identities=10%  Similarity=0.015  Sum_probs=188.0

Q ss_pred             EecCCCEEEEeeC--CC---eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----------CCCeEEEEEcC
Q 010470          233 FEYNSARLISGGQ--DK---SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SSNNLYVWDVN  297 (510)
Q Consensus       233 ~s~~~~~l~s~~~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~  297 (510)
                      ..|+++++++...  .+   .|.+||..+++.+..+.....+  .++++|||++++++.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467777666653  22   8899999999988877654444  999999999999886          36789999999


Q ss_pred             CCCeeEeecCC-------CCceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeee-eeecCceeEEEEcCCC-CEE
Q 010470          298 SGRVRHTLTGH-------TDKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNT-IIFHSNCNALAFSMDG-QTI  366 (510)
Q Consensus       298 ~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~i~~i~~~~~~-~~l  366 (510)
                      +.+.+..+...       ......+.|+| ++++++++..  ++.|.++| .+++.+.. +.....   +.+.|++ ..+
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~  180 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF  180 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence            98887766432       12345789999 7888887764  57899999 99988877 654432   4455655 455


Q ss_pred             EEecCCCcEEEEECCCCceeeeec-----cccccc-EEEEEEcCCCCEEEEEecCCcEEEEEcCCce--eeeEeecCC--
Q 010470          367 FSGHIDGNLRLWDIQTGKLLSEVA-----AHSLAA-VTSISLSRSGNIILTSGRDNLHNLFDIRSLE--VCGSLRATG--  436 (510)
Q Consensus       367 ~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~-i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~--  436 (510)
                      ++.+.||.+.++|. +++......     ... .+ .....+.+++..++..+..+.+.++|+.+..  ....+....  
T Consensus       181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~  258 (373)
T 2mad_H          181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA-QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG  258 (373)
T ss_pred             EEEcCCCCEEEEEC-CCcEEEEEeccccccCC-cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence            66778999999999 887663322     111 22 2234566766655555578899999997542  222222111  


Q ss_pred             ----CeeecCceeEEEcCCCCEEEEEcC----------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEee
Q 010470          437 ----NRVASNWSRSCISPDESYVAAGSA----------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASAD  501 (510)
Q Consensus       437 ----~~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~  501 (510)
                          ......+..+.++|+++.+++...          ++.|.++|+.+++.+..+.. .....+++|+|||+ .++++.
T Consensus       259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence                011112233778999998887653          35799999999999888864 33578999999999 777776


Q ss_pred             -CCCeEEEcC
Q 010470          502 -KNGVVCVWT  510 (510)
Q Consensus       502 -~dg~i~iwd  510 (510)
                       .++.|.+||
T Consensus       338 ~~~~~V~ViD  347 (373)
T 2mad_H          338 AGTEVLHIYD  347 (373)
T ss_pred             CCCCeEEEEE
Confidence             589999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=1.1e-17  Score=160.47  Aligned_cols=243  Identities=14%  Similarity=0.020  Sum_probs=162.7

Q ss_pred             EEEeCCCCcceeccccccc-----ceeEEEEecCCCEEEEEeCC---CeEEEEEcCCCCeeEeecCCCCceEEEEEecCC
Q 010470          250 KLWDTNTGSLSSTLYGCLG-----SVLDLAITHDNRSVIAASSS---NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKIS  321 (510)
Q Consensus       250 ~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  321 (510)
                      ..+|..++..+..+..+..     .+.+++|+|||++|+.+...   ..|.+||+.+++......++......+.|+| +
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-d   91 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-D   91 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-T
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-C
Confidence            3446677766666554433     37788999999998877643   4788999988776544433333233478999 8


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeE-------------------EEEcCCCCEEEEe-----cCCCcEE
Q 010470          322 SRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNA-------------------LAFSMDGQTIFSG-----HIDGNLR  376 (510)
Q Consensus       322 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~-------------------i~~~~~~~~l~~~-----~~dg~i~  376 (510)
                      ++.|+.++.++.|++||+.++........+.. ...                   +.++|+++.++.+     ..++.|+
T Consensus        92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~  171 (396)
T 3c5m_A           92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI  171 (396)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred             CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence            88998888889999999998876655543332 111                   3467777776654     3566899


Q ss_pred             EEECCCCceeeeecccccccEEEEEEcC-CCCEEEEEecC------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470          377 LWDIQTGKLLSEVAAHSLAAVTSISLSR-SGNIILTSGRD------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                      +||+.+++...... +. ..+..+.|+| ++..|+..+.+      ..|.+||+.++....... +..  ...+..+.|+
T Consensus       172 ~~d~~~g~~~~~~~-~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~--~~~~~~~~~s  246 (396)
T 3c5m_A          172 KVDIETGELEVIHQ-DT-AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAE--GESCTHEFWI  246 (396)
T ss_dssp             EEETTTCCEEEEEE-ES-SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCT--TEEEEEEEEC
T ss_pred             EEECCCCcEEeecc-CC-cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCC--CccccceEEC
Confidence            99998887655443 22 6789999999 78877665543      368888987654332222 110  1123347899


Q ss_pred             CCCCEEEEEcCC-----CeEEEEeCCCcceeecccccCcCEEEEEEeC-CCCcEEEee
Q 010470          450 PDESYVAAGSAD-----GSVYIWSISKADIVRTLKEHTAPVLSCSWSG-LGKPLASAD  501 (510)
Q Consensus       450 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~  501 (510)
                      |+|++|+.++.+     +.|++||+.+++........  ... +.|+| +|+++++++
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEE
T ss_pred             CCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEec
Confidence            999987776543     45999999887654322211  233 89999 999888754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=2e-16  Score=163.58  Aligned_cols=239  Identities=11%  Similarity=0.066  Sum_probs=166.4

Q ss_pred             cccceeEEEEecCCCEEEEEeCCC-----eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCc-------
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSN-----NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT-------  333 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~-------  333 (510)
                      |...+..++|||||++|+.++.++     .|++||+.+++.......+ ..+.+++|+| +++.|+.++.++.       
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCcccccccc
Confidence            445688999999999998876543     8999999999876533222 2367799999 7888888877765       


Q ss_pred             ---------EEEEECCCCeEe--eeeeec---CceeEEEEcCCCCEEEEecC-----CCcEEEEECCC------Cc-eee
Q 010470          334 ---------LKVWDLHKGYCV--NTIIFH---SNCNALAFSMDGQTIFSGHI-----DGNLRLWDIQT------GK-LLS  387 (510)
Q Consensus       334 ---------i~iwd~~~~~~~--~~~~~~---~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~  387 (510)
                               |++|++.++...  ..+...   ..+..+.|+|||++|+.++.     +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     999999877632  222221   23678999999999887654     56899999976      43 344


Q ss_pred             eecccccccEEEEEEcCCCCEEEEEecC----CcEEEEEcCCcee--eeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470          388 EVAAHSLAAVTSISLSRSGNIILTSGRD----NLHNLFDIRSLEV--CGSLRATGNRVASNWSRSCISPDESYVAAGSAD  461 (510)
Q Consensus       388 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  461 (510)
                      .+..+. ..+.. .|+|+|..|+..+..    +.|.+||+.++..  ...+..+...  ..+..++|++++.++++...+
T Consensus       281 ~l~~~~-~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          281 KLIDNF-EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK--DVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             EEECSS-SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS--CEEEEEEEETTTEEEEEEEET
T ss_pred             EeeCCC-CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC--CeEEEEEEEcCCEEEEEEEEC
Confidence            555443 33433 488999987776653    3699999987642  2333333221  112336788888888888888


Q ss_pred             Ce--EEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe-e---CCCeEEEcC
Q 010470          462 GS--VYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA-D---KNGVVCVWT  510 (510)
Q Consensus       462 g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~---~dg~i~iwd  510 (510)
                      +.  |++|++.+++.+..+..+.+.+.+++++|++..++.. +   ..+.|+.||
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            84  6677876787777777777888999999998766532 2   346777775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.75  E-value=5.4e-16  Score=143.98  Aligned_cols=271  Identities=11%  Similarity=0.073  Sum_probs=189.8

Q ss_pred             EecCCCEEEEeeC-----CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----------CCCeEEEEEcC
Q 010470          233 FEYNSARLISGGQ-----DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SSNNLYVWDVN  297 (510)
Q Consensus       233 ~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~  297 (510)
                      ..|+++.+++...     ++.|.++|..+++.+.++.....+  .++++|||+++++++          .++.|.+||..
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            3578888777755     679999999999999888765555  499999999998876          36789999999


Q ss_pred             CCCeeEeecCCC-------CceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE
Q 010470          298 SGRVRHTLTGHT-------DKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS  368 (510)
Q Consensus       298 ~~~~~~~~~~~~-------~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  368 (510)
                      +++.+..+....       .....+.++| ++++++++..  ++.|.++|+.+++.+.++.....  ...+....+.+++
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~  194 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFM  194 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEE
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEE
Confidence            999888775321       2456789999 7777777653  68999999999999998866542  1223224456667


Q ss_pred             ecCCCcEEEEECCC-Cceeeeecc---cccccEE-EEEEc-CCCCEEEEEecCCcEEEEEcCCce--eeeEeec------
Q 010470          369 GHIDGNLRLWDIQT-GKLLSEVAA---HSLAAVT-SISLS-RSGNIILTSGRDNLHNLFDIRSLE--VCGSLRA------  434 (510)
Q Consensus       369 ~~~dg~i~i~d~~~-~~~~~~~~~---~~~~~i~-~i~~~-~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~------  434 (510)
                      .+.||.+.+.++.+ ++.......   ....++. ...|. ++|++++ .+.+|.++++|+.+..  ....+..      
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~  273 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAER  273 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccc
Confidence            77888888888875 554321111   0001221 23554 6776555 4458999999997653  3333321      


Q ss_pred             CCCeeecCceeEEEcCCCCEEEEEcC----------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEe-eC
Q 010470          435 TGNRVASNWSRSCISPDESYVAAGSA----------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASA-DK  502 (510)
Q Consensus       435 ~~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~  502 (510)
                      ........+..++++++++.+++...          .+.|.++|+.+++.+..+... ..+.+++++||++ .|+++ ..
T Consensus       274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~  352 (386)
T 3sjl_D          274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTG  352 (386)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETT
T ss_pred             cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCC
Confidence            01122233444788999998887643          257999999999999888643 3678999999997 56654 55


Q ss_pred             CCeEEEcC
Q 010470          503 NGVVCVWT  510 (510)
Q Consensus       503 dg~i~iwd  510 (510)
                      ++.|.++|
T Consensus       353 ~~~VsViD  360 (386)
T 3sjl_D          353 DKTLYIHD  360 (386)
T ss_dssp             TTEEEEEE
T ss_pred             CCeEEEEE
Confidence            88998876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=3.7e-16  Score=147.00  Aligned_cols=231  Identities=13%  Similarity=0.124  Sum_probs=156.0

Q ss_pred             cceEEEEEecCCCEEEEeeCC---C--eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC------------
Q 010470          226 GGCASILFEYNSARLISGGQD---K--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS------------  288 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------  288 (510)
                      ..+.++.|||||++|+.++.+   +  .|.+|++.+++....... .. +..+.|+|||+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            468889999999999887754   3  488888888776544333 33 8999999999999888742            


Q ss_pred             ---------------CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC---------cEEEEECCCCeE
Q 010470          289 ---------------NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR---------TLKVWDLHKGYC  344 (510)
Q Consensus       289 ---------------~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~  344 (510)
                                     ..|++||+.+++.+..+.. . .+..+.|+| ++ ++++++.++         .|.++|  ++..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~  210 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE  210 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC--CCce
Confidence                           5799999988876455554 3 788999999 66 777775542         455556  5654


Q ss_pred             eeeeeecCceeEEEEcCCCCEEEEecCC--------CcEEEEECCCCceeeeecccccccEEE-EEEcCCCCEEEEEecC
Q 010470          345 VNTIIFHSNCNALAFSMDGQTIFSGHID--------GNLRLWDIQTGKLLSEVAAHSLAAVTS-ISLSRSGNIILTSGRD  415 (510)
Q Consensus       345 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d  415 (510)
                      ...... ..+..  ++|+|+.|+.++.+        +.|++||  +++.......+ ...+.. +.|+ ++ ++++++.+
T Consensus       211 ~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~  282 (347)
T 2gop_A          211 EKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV-DRGVGQAKIKD-GK-VYFTLFEE  282 (347)
T ss_dssp             EEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC-CSEEEEEEEET-TE-EEEEEEET
T ss_pred             EEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC-CcccCCccEEc-Cc-EEEEEecC
Confidence            433333 33333  48999988766543        4688888  55543333333 367776 8999 88 88899999


Q ss_pred             CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeE-EEEeCCCcceeecccccC
Q 010470          416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV-YIWSISKADIVRTLKEHT  482 (510)
Q Consensus       416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~  482 (510)
                      +.+++| +.+++....+. ....    +..++|+|  .++++++.++.. .+|.+. ++ ...+..|.
T Consensus       283 ~~~~l~-~~~g~~~~~~~-~~~~----v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n  340 (347)
T 2gop_A          283 GSVNLY-IWDGEIKPIAK-GRHW----IMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYN  340 (347)
T ss_dssp             TEEEEE-EESSSEEEEEC-SSSE----EEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTT
T ss_pred             CcEEEE-EcCCceEEEec-CCCe----EEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEecccc
Confidence            999999 87655433332 2322    34478899  677776666654 666665 44 33444444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.73  E-value=8.5e-15  Score=135.58  Aligned_cols=242  Identities=13%  Similarity=0.139  Sum_probs=169.2

Q ss_pred             cccccceEEEEEecCCCEEEE-------eeCCCeEEEEeCCCCcceeccc----ccccceeEEEEecC-CCEEEEEeCCC
Q 010470          222 NAHEGGCASILFEYNSARLIS-------GGQDKSIKLWDTNTGSLSSTLY----GCLGSVLDLAITHD-NRSVIAASSSN  289 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~d~  289 (510)
                      ........+++|+++|.++++       +..++.|.+||..+++......    ++...+.+++++++ ++ +++++..+
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCC
Confidence            334456789999999988888       6778999999988776533221    24567899999999 65 44455455


Q ss_pred             eEEEEEcCCCCeeEe-ecC----CCCceEEEEEecCCCCEEEEEeCC---------------CcEEEEECCCCeEeeeee
Q 010470          290 NLYVWDVNSGRVRHT-LTG----HTDKVCAVDVSKISSRHVVSAAYD---------------RTLKVWDLHKGYCVNTII  349 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~-~~~----~~~~v~~i~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~  349 (510)
                      .|.+||.. ++.... ...    ....+.++++.+ +++++++...+               +.|..||.. +.......
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            79999988 765433 221    124578999998 67777766554               578888876 55544444


Q ss_pred             ecCceeEEEEc----CCCCEEEE-ecCCCcEEEEECC-CCce-----eeeecccccccEEEEEEcCCCCEEEEEecCCcE
Q 010470          350 FHSNCNALAFS----MDGQTIFS-GHIDGNLRLWDIQ-TGKL-----LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLH  418 (510)
Q Consensus       350 ~~~~i~~i~~~----~~~~~l~~-~~~dg~i~i~d~~-~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  418 (510)
                      ....+..++++    |+++.+++ ...++.|.+||+. ++..     ...+..+....+..++++++|+++++...++.|
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            44557889999    99976554 4567899999976 4432     122221111457889999999988888888999


Q ss_pred             EEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEE-EEcCCCeEEEEeCCC
Q 010470          419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA-AGSADGSVYIWSISK  471 (510)
Q Consensus       419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~  471 (510)
                      .+||..+++....+..+..    .+..++++|+|+.|+ +...++.|..|++..
T Consensus       250 ~~~d~~~g~~~~~~~~~~~----~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          250 EVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEcCCCCcEeEEEeCCCC----CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            9999987766665554432    234588999999554 455668899999865

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.73  E-value=8.2e-16  Score=145.51  Aligned_cols=269  Identities=10%  Similarity=0.052  Sum_probs=189.2

Q ss_pred             cCCCEEEEeeC-C----CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----------CCCeEEEEEcCCC
Q 010470          235 YNSARLISGGQ-D----KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SSNNLYVWDVNSG  299 (510)
Q Consensus       235 ~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~  299 (510)
                      ++++.+++... +    +.|.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            35555555443 2    69999999999999888765555  899999999998886          3678999999999


Q ss_pred             CeeEeecCC-------CCceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeeeeeecCceeEEEEcCCC-CEEEEe
Q 010470          300 RVRHTLTGH-------TDKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDG-QTIFSG  369 (510)
Q Consensus       300 ~~~~~~~~~-------~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~  369 (510)
                      +.+..+.-.       ......+.++| ++++++++..  ++.|.++|+.+++.+..+.....   ....|++ ..+++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence            988877522       23456788999 7888777763  57899999999999888876442   2334433 555666


Q ss_pred             cCCCcEEEEECCCCceeee----ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee--eEeecC------CC
Q 010470          370 HIDGNLRLWDIQTGKLLSE----VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC--GSLRAT------GN  437 (510)
Q Consensus       370 ~~dg~i~i~d~~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~------~~  437 (510)
                      +.||.+.+.+..+++....    +..........+.|++++..++..+..+.+.+.|.......  ..+...      ..
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g  315 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD  315 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence            6788888888755554422    21111011123567899888887788899999998754422  111110      01


Q ss_pred             eeecCceeEEEcCCCCEEEEEcC----------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC-cEEEee-CCCe
Q 010470          438 RVASNWSRSCISPDESYVAAGSA----------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK-PLASAD-KNGV  505 (510)
Q Consensus       438 ~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~  505 (510)
                      .....+..++++|+++.+++...          ++.|.++|+.+++.+.++.... ...+++|+|||+ .++++. .++.
T Consensus       316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~  394 (426)
T 3c75_H          316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQT  394 (426)
T ss_dssp             EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTE
T ss_pred             cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCe
Confidence            11122223789999988777642          3579999999999999886433 478999999999 787777 5899


Q ss_pred             EEEcC
Q 010470          506 VCVWT  510 (510)
Q Consensus       506 i~iwd  510 (510)
                      |.++|
T Consensus       395 VsVID  399 (426)
T 3c75_H          395 LHIYD  399 (426)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.73  E-value=2.4e-14  Score=134.94  Aligned_cols=249  Identities=10%  Similarity=-0.027  Sum_probs=175.9

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceeccccc-------ccceeEEEEecCC
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITHDN  279 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~  279 (510)
                      ...++.....+  .++|||||++++++.          .++.|.+||..+.+.+..+...       ......+.|+|||
T Consensus        59 ~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG  136 (373)
T 2mad_H           59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN  136 (373)
T ss_pred             EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC
Confidence            34444443344  999999999998886          3678999999988877665422       1234689999999


Q ss_pred             CEEEEEeC--CCeEEEEEcCCCCeeEe-ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-----ec
Q 010470          280 RSVIAASS--SNNLYVWDVNSGRVRHT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-----FH  351 (510)
Q Consensus       280 ~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~  351 (510)
                      ++|++++.  ++.|.++| .+++.+.. +....    ++.+.|.....+++.+.||.+.++|. +++......     ..
T Consensus       137 ~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~  210 (373)
T 2mad_H          137 ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTA  210 (373)
T ss_pred             CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccC
Confidence            99999874  57899999 99998877 65322    24455655667778888999999999 887663322     11


Q ss_pred             -Cc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCc--eeeeeccc---------ccccEEEEEEcCCCCEEEEEec----
Q 010470          352 -SN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGK--LLSEVAAH---------SLAAVTSISLSRSGNIILTSGR----  414 (510)
Q Consensus       352 -~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~----  414 (510)
                       .+ .....+.+++..++..+..+.+.+.|+..+.  .+..+...         .......+.++|+++.+++...    
T Consensus       211 ~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~  290 (373)
T 2mad_H          211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence             11 1234556666555544567899999986543  22222110         0123445789999998887653    


Q ss_pred             ------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEc-CCCeEEEEeCCCcceeecc
Q 010470          415 ------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES-YVAAGS-ADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       415 ------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~  478 (510)
                            ++.|.++|+.+++.+..+.....+     ..+.|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus       291 ~~~~~~~~~V~VID~~t~~vv~~i~~g~~p-----~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          291 WKLHAAAKEVTSVTGLVGQTSSQISLGHDV-----DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ccccCCCCeEEEEECCCCEEEEEEECCCCc-----CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence                  357999999999998888654432     3389999999 777777 4899999999999998874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.72  E-value=3e-16  Score=161.67  Aligned_cols=266  Identities=11%  Similarity=-0.008  Sum_probs=169.9

Q ss_pred             cCCCEEEEeeCCC-----eEEEEeCCCCcceecc------cccccceeEEEEecCCCEEEEEe-----CCCeEEEEEcCC
Q 010470          235 YNSARLISGGQDK-----SIKLWDTNTGSLSSTL------YGCLGSVLDLAITHDNRSVIAAS-----SSNNLYVWDVNS  298 (510)
Q Consensus       235 ~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~  298 (510)
                      |+|++++....++     .|.+.+...+.....+      .+|...+.+++|||||++|+.+.     .+..|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            5677666555433     2444444444332221      24555789999999999998543     346899999999


Q ss_pred             CCeeEeecCCCCce--EEEEEecCCCCEEEEEeCCCc-------------EEEEECCCCeEe--eeee--ec-CceeEEE
Q 010470          299 GRVRHTLTGHTDKV--CAVDVSKISSRHVVSAAYDRT-------------LKVWDLHKGYCV--NTII--FH-SNCNALA  358 (510)
Q Consensus       299 ~~~~~~~~~~~~~v--~~i~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~--~~~~--~~-~~i~~i~  358 (510)
                      ++.+.  ..+...+  ..++|+| ++..|+.++.|..             |++|++.++...  ..+.  .+ ..+.++.
T Consensus       157 g~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          157 GEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             CCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            88651  1121222  6789999 7888888887766             999999877621  2222  22 3478999


Q ss_pred             EcCCCCEEEEecCCC----cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEe---cCCcEEEEEcCCcee--e
Q 010470          359 FSMDGQTIFSGHIDG----NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG---RDNLHNLFDIRSLEV--C  429 (510)
Q Consensus       359 ~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~i~d~~~~~~--~  429 (510)
                      |+|||++|+.++.++    .|++||..++.. ..+..+. ..+....+ ++|.+++.+.   .++.|.+||+.++..  .
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~-~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGV-GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECS-SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCC-CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence            999999998777655    678887655543 3344333 34455555 5666444443   257899999987642  1


Q ss_pred             eEeecCC-CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC-Ccceeeccccc-CcCEEEEEEeCCCCcEEE----eeC
Q 010470          430 GSLRATG-NRVASNWSRSCISPDESYVAAGSADGSVYIWSIS-KADIVRTLKEH-TAPVLSCSWSGLGKPLAS----ADK  502 (510)
Q Consensus       430 ~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s----~~~  502 (510)
                      ..+..+. ..   .+..++++ ++.++++...|+..++|.+. +++....+..+ .+.+..++++|++..|+.    ...
T Consensus       311 ~~l~~~~~~~---~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~  386 (695)
T 2bkl_A          311 KEIVPEDSSA---SLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTT  386 (695)
T ss_dssp             EEEECCCSSC---EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTE
T ss_pred             eEEecCCCCC---eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence            2222222 11   12235666 77788888889988887654 35555556554 567788899999987663    233


Q ss_pred             CCeEEEcC
Q 010470          503 NGVVCVWT  510 (510)
Q Consensus       503 dg~i~iwd  510 (510)
                      .+.|++||
T Consensus       387 P~~v~~~d  394 (695)
T 2bkl_A          387 PRQIYKTS  394 (695)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEEE
Confidence            46788775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.72  E-value=3.4e-15  Score=138.60  Aligned_cols=266  Identities=12%  Similarity=0.084  Sum_probs=185.8

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceeccccc-------ccceeEEEEec
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITH  277 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~  277 (510)
                      .+...++..-..+  .++++|||+++++++          .++.|.+||..+++.+..+...       ......+.|+|
T Consensus        69 ~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp  146 (386)
T 3sjl_D           69 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP  146 (386)
T ss_dssp             TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence            3445555544445  499999999888775          3678999999999988776432       12466799999


Q ss_pred             CCCEEEEEeC--CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEeeeeeec---
Q 010470          278 DNRSVIAASS--SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-GYCVNTIIFH---  351 (510)
Q Consensus       278 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~---  351 (510)
                      ||++++++..  ++.|.++|+.+++.+.++....    |..+.|.+...+++.+.||.+.+.++.+ ++........   
T Consensus       147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~  222 (386)
T 3sjl_D          147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP  222 (386)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC
T ss_pred             CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc
Confidence            9999998874  6899999999999988886422    1223354667788888899999999976 5543221111   


Q ss_pred             --Cce-eEEEEc-CCCCEEEEecCCCcEEEEECCCCc--eeeeec---------ccccccEEEEEEcCCCCEEEEEec--
Q 010470          352 --SNC-NALAFS-MDGQTIFSGHIDGNLRLWDIQTGK--LLSEVA---------AHSLAAVTSISLSRSGNIILTSGR--  414 (510)
Q Consensus       352 --~~i-~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~---------~~~~~~i~~i~~~~~~~~l~~~~~--  414 (510)
                        ..+ ....|. ++|++++ .+.+|.|+++|+.++.  ....+.         .-.......+.++|+++.+++...  
T Consensus       223 ~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~  301 (386)
T 3sjl_D          223 EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR  301 (386)
T ss_dssp             TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence              111 224553 6776655 4447999999997654  333332         000123445778999998888653  


Q ss_pred             --------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC-EEEEE-cCCCeEEEEeCCCcceeecccccCcC
Q 010470          415 --------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES-YVAAG-SADGSVYIWSISKADIVRTLKEHTAP  484 (510)
Q Consensus       415 --------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~  484 (510)
                              .+.|.++|+.+++.+..+.....     ...+.+++|++ +|++. ..++.|.++|..+++.+.++.... .
T Consensus       302 ~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~-----~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~-~  375 (386)
T 3sjl_D          302 DEWRHKTASRFVVVLDAKTGERLAKFEMGHE-----IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG-H  375 (386)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-----ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC-S
T ss_pred             cccccCCCCCEEEEEECCCCeEEEEEECCCC-----cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC-C
Confidence                    25799999999999988875432     23389999997 66664 558999999999999998887532 3


Q ss_pred             EEEEEEeCC
Q 010470          485 VLSCSWSGL  493 (510)
Q Consensus       485 v~~~~~~~~  493 (510)
                      .+.+.+++|
T Consensus       376 p~~l~~s~d  384 (386)
T 3sjl_D          376 GPQVITTAD  384 (386)
T ss_dssp             SCCEEEECC
T ss_pred             CceeEECCc
Confidence            356677766

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.71  E-value=1e-14  Score=134.94  Aligned_cols=237  Identities=10%  Similarity=0.109  Sum_probs=163.2

Q ss_pred             cceeEEEEecCCCEEEE-------EeCCCeEEEEEcCCCCeeEeec----CCCCceEEEEEecCC-CCEEEEEeCCCcEE
Q 010470          268 GSVLDLAITHDNRSVIA-------ASSSNNLYVWDVNSGRVRHTLT----GHTDKVCAVDVSKIS-SRHVVSAAYDRTLK  335 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~i~~~~~~-~~~l~s~~~dg~i~  335 (510)
                      ....+++|++++.++++       +..++.|.+||..+++......    ++...+.++.+.+ + +.+++ ++..+.|.
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v-~~~~~~l~   95 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFV-ADMRLGLL   95 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEE-EETTTEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEE-EECCCCEE
Confidence            45678999999987777       5778899999988877543222    2456789999988 5 55444 44455799


Q ss_pred             EEECCCCeEeee-eee-----cCceeEEEEcCCCCEEEEecCC---------------CcEEEEECCCCceeeeeccccc
Q 010470          336 VWDLHKGYCVNT-IIF-----HSNCNALAFSMDGQTIFSGHID---------------GNLRLWDIQTGKLLSEVAAHSL  394 (510)
Q Consensus       336 iwd~~~~~~~~~-~~~-----~~~i~~i~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~  394 (510)
                      +||.. ++.... ...     ...+.+++++++|+++++...+               +.|..||.. ++...... .. 
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~-  171 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AF-  171 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EE-
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-CC-
Confidence            99998 665433 221     1247899999999988777654               578888875 55433322 22 


Q ss_pred             ccEEEEEEc----CCCCEEEEE-ecCCcEEEEEcC-Cceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEE
Q 010470          395 AAVTSISLS----RSGNIILTS-GRDNLHNLFDIR-SLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI  466 (510)
Q Consensus       395 ~~i~~i~~~----~~~~~l~~~-~~d~~i~i~d~~-~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i  466 (510)
                      ..+..++++    |+++.++++ ..++.|.+||+. ++...  ..+.............++++++|+++++...++.|.+
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~  251 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence            457889999    999766555 567899999976 34321  1111111000012234889999998888877889999


Q ss_pred             EeCCCcceeecccccCcCEEEEEEeCCCCcEE-EeeCCCeEEEcC
Q 010470          467 WSISKADIVRTLKEHTAPVLSCSWSGLGKPLA-SADKNGVVCVWT  510 (510)
Q Consensus       467 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd  510 (510)
                      ||..+++.+..+..+...+.+++|+|+|+.|+ +...++.|..|+
T Consensus       252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            99887877777766767899999999999554 555567777764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=4.2e-14  Score=129.80  Aligned_cols=236  Identities=10%  Similarity=0.040  Sum_probs=170.1

Q ss_pred             ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe-ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 010470          265 GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT-LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY  343 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~  343 (510)
                      .+...+.+++++++|+.+++...++.|.+||.. +..... ...+...+.++++.+ ++.++++...++.|..||.. +.
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-Cc
Confidence            345678999999999977776668899999988 654332 223457789999988 67777776668899999986 43


Q ss_pred             Eeeeeee---cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470          344 CVNTIIF---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL  420 (510)
Q Consensus       344 ~~~~~~~---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i  420 (510)
                      . ..+..   ...+.+++++++|..+++...++.|.+||. +++............+.+++++++|.++++...++.|..
T Consensus        89 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  166 (299)
T 2z2n_A           89 I-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR  166 (299)
T ss_dssp             E-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             E-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence            2 22322   245889999999998888877889999998 655443322222357899999999988887777889999


Q ss_pred             EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec-ccccCcCEEEEEEeCCCCcEEE
Q 010470          421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-LKEHTAPVLSCSWSGLGKPLAS  499 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s  499 (510)
                      ||. +++.... .....  ......++++++|.++++...++.|.+|+. ++..... +..+...+.+++++++|..+++
T Consensus       167 ~~~-~g~~~~~-~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          167 ITE-SGDITEF-KIPTP--ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             ECT-TCCEEEE-ECSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EcC-CCcEEEe-eCCCC--CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence            998 6554432 11111  122345889999998887777889999998 6654322 3334567899999999986666


Q ss_pred             eeCCCeEEEcC
Q 010470          500 ADKNGVVCVWT  510 (510)
Q Consensus       500 ~~~dg~i~iwd  510 (510)
                      ...++.|..||
T Consensus       242 ~~~~~~i~~~d  252 (299)
T 2z2n_A          242 EWGANKIGRLT  252 (299)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ccCCceEEEEC
Confidence            65677887774

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.70  E-value=2.7e-14  Score=136.58  Aligned_cols=239  Identities=12%  Similarity=0.106  Sum_probs=169.1

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC--eEEEEEcCCCCee
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN--NLYVWDVNSGRVR  302 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~  302 (510)
                      -.....++|+++|+++++...++.|++||..++........ ..... ++|+|+++.|+++..++  .|.+|+...+...
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            34688999999999888888889999999988776544433 23334 99999999999998766  8999998766544


Q ss_pred             Eee----cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee----eeecCc--ee-EEEEcCC-CCEEEEec
Q 010470          303 HTL----TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT----IIFHSN--CN-ALAFSMD-GQTIFSGH  370 (510)
Q Consensus       303 ~~~----~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~--i~-~i~~~~~-~~~l~~~~  370 (510)
                      ..+    ......+.+++++| ++..|+.+..++.|..||..++.....    ......  +. .++|+|+ +.++++..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            444    22456678899998 444555577788999999987753222    111111  23 9999995 66666777


Q ss_pred             CCCcEEEEECCCCceeeeecccc--------------cccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeEeecC
Q 010470          371 IDGNLRLWDIQTGKLLSEVAAHS--------------LAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRAT  435 (510)
Q Consensus       371 ~dg~i~i~d~~~~~~~~~~~~~~--------------~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~  435 (510)
                      .++.|+.|+....  +..+....              ...+..++++|+|+++++.. .++.|+.|++.++.... +.+.
T Consensus       287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~g~  363 (409)
T 3hrp_A          287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VAGQ  363 (409)
T ss_dssp             TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EEEC
T ss_pred             CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-EeCC
Confidence            7889999997533  22222211              24588999999999888887 88999999987776433 3222


Q ss_pred             C-C----------eeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          436 G-N----------RVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       436 ~-~----------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      . .          ........++++++|.++++...++.|+.+++
T Consensus       364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            1 0          00123456899999988888888999988875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.68  E-value=5.5e-15  Score=138.52  Aligned_cols=261  Identities=12%  Similarity=0.080  Sum_probs=172.0

Q ss_pred             cceEEEEEecCCCEEEEee--CCCeEEEEeCCCCcce------ecccccccceeEEEEecCCCEEEEEeC-----CCeEE
Q 010470          226 GGCASILFEYNSARLISGG--QDKSIKLWDTNTGSLS------STLYGCLGSVLDLAITHDNRSVIAASS-----SNNLY  292 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~  292 (510)
                      ..+..++++++|+++++..  .++.++||.+.+++..      .....+...+.+++++++++++++...     ++.|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            6789999999999988864  2343555555455432      111234568899999999886665544     57999


Q ss_pred             EEEcCCCCeeEeecCC------CCceEEEEEecCCCCEEEEEe---CCCcEEEEECCCCeEeeeeeecCc--eeEEEEcC
Q 010470          293 VWDVNSGRVRHTLTGH------TDKVCAVDVSKISSRHVVSAA---YDRTLKVWDLHKGYCVNTIIFHSN--CNALAFSM  361 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~  361 (510)
                      +||+.+++.+..+...      ...+..+++.+.++..+++..   .++.|.+||+.+++....+..+..  .....+.+
T Consensus        97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~  176 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI  176 (343)
T ss_dssp             EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred             EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence            9999999877666432      235688999874454555555   578999999998876665543211  11144455


Q ss_pred             CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC-cEEEEEcC---Cce-----eee--
Q 010470          362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN-LHNLFDIR---SLE-----VCG--  430 (510)
Q Consensus       362 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~i~d~~---~~~-----~~~--  430 (510)
                      +|..+.+.+.+|.+..|.               ..+..|+|+|+|+.|+++...+ .+..++..   .+.     ...  
T Consensus       177 ~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  241 (343)
T 2qe8_A          177 DGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI  241 (343)
T ss_dssp             TTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred             CCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence            677777777777775543               2467899999999888887665 55555532   110     000  


Q ss_pred             EeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470          431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGV  505 (510)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~  505 (510)
                      ...+...    ....++++++|.++++...++.|.+||..+++....... +...+.+++|.++|.++++.+..+.
T Consensus       242 ~~~g~~g----~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          242 ERYSEKP----ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             EEEEECC----SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             EecccCC----CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence            0001111    223489999999999999999999999855654332222 2456899999999987777664433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.68  E-value=1.2e-14  Score=137.59  Aligned_cols=253  Identities=12%  Similarity=0.043  Sum_probs=181.4

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceeccccc-------ccceeEEEEec
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITH  277 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~  277 (510)
                      .+.+.++..-..+  .++++|||++++++.          .++.|.++|..+++.+..+.-.       ......+.|+|
T Consensus       109 ~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp  186 (426)
T 3c75_H          109 GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP  186 (426)
T ss_dssp             TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT
T ss_pred             CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC
Confidence            3444555544445  899999999888876          3678999999999988776421       23456799999


Q ss_pred             CCCEEEEEeC--CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee----eeec
Q 010470          278 DNRSVIAASS--SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT----IIFH  351 (510)
Q Consensus       278 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~  351 (510)
                      ||++++++..  ++.|.++|+.+++.+..+.....    ....|.....+++.+.||.+.+.+..+++....    +...
T Consensus       187 DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~  262 (426)
T 3c75_H          187 DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE  262 (426)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT
T ss_pred             CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC
Confidence            9999999874  57999999999998888764221    233453456777788899999999866655432    1111


Q ss_pred             Cc--eeEEEEcCCCCEEEEecCCCcEEEEECCCCcee--eeeccc---------ccccEEEEEEcCCCCEEEEEec----
Q 010470          352 SN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL--SEVAAH---------SLAAVTSISLSRSGNIILTSGR----  414 (510)
Q Consensus       352 ~~--i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~----  414 (510)
                      ..  ...+.+.+++..++..+..|.|.+.|.......  ..+...         .......+.++|+++.+++...    
T Consensus       263 ~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~  342 (426)
T 3c75_H          263 DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE  342 (426)
T ss_dssp             TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred             CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence            11  234567888888777777899999998654321  111100         0012223789999988777643    


Q ss_pred             ------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEc-CCCeEEEEeCCCcceeecc
Q 010470          415 ------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES-YVAAGS-ADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       415 ------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~  478 (510)
                            ++.|.++|+.+.+.+..+.....+     ..+.|+|||+ ++++.. .++.|.|+|+.+++.+.++
T Consensus       343 gthk~~s~~VsVID~~T~kvv~~I~vg~~P-----~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          343 WKHKAASRFVVVLNAETGERINKIELGHEI-----DSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEEEEE-----CEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ccccCCCCEEEEEECCCCeEEEEEECCCCc-----CeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                  357999999999999988654432     3389999999 888877 5899999999999999886

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.68  E-value=7.2e-15  Score=152.48  Aligned_cols=266  Identities=9%  Similarity=0.014  Sum_probs=168.1

Q ss_pred             cCCCEEEEeeCCCe---EEEE--eCC---CCcceec------ccccccceeEEEEecCCCEEEEEeCC-----CeEEEEE
Q 010470          235 YNSARLISGGQDKS---IKLW--DTN---TGSLSST------LYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVWD  295 (510)
Q Consensus       235 ~~~~~l~s~~~dg~---i~iw--d~~---~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd  295 (510)
                      |+|++++....++.   -.+|  +..   .+.....      -.+|...+..++|||||++|+.++.+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            77877766554332   4444  333   3332211      12233478899999999999887653     4699999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCc--------------EEEEECCCCeE--eeeeeecC---ceeE
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT--------------LKVWDLHKGYC--VNTIIFHS---NCNA  356 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~--------------i~iwd~~~~~~--~~~~~~~~---~i~~  356 (510)
                      +.+++.+... .+...+..++|+| + +.|+.++.++.              |++|++.++..  ...+....   .+..
T Consensus       196 l~tg~~~~~~-~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          196 VADGKPLADE-LKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             TTTCCEEEEE-EEEEESCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             CCCCCCCCcc-CCCceeccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            9999875431 1222235788999 6 77777666543              89999977652  12222221   3788


Q ss_pred             EEEcCCCCEEEEecCCC-----cEEEEECCCC--ceeeeecccccccEEEEEEcCCCCEEEEEecC----CcEEEEEcCC
Q 010470          357 LAFSMDGQTIFSGHIDG-----NLRLWDIQTG--KLLSEVAAHSLAAVTSISLSRSGNIILTSGRD----NLHNLFDIRS  425 (510)
Q Consensus       357 i~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~i~d~~~  425 (510)
                      +.|+|||++|+..+.++     .|++||+.++  .....+..+. ..+... ++|+|+.|+..+.+    +.|.+||+.+
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS-SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC-CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            99999999988766443     7999999876  3144444443 333333 34889988877754    4599999987


Q ss_pred             c--eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC-Ccceeecccc-cCcCEEEEEEeCCCCcEEE--
Q 010470          426 L--EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS-KADIVRTLKE-HTAPVLSCSWSGLGKPLAS--  499 (510)
Q Consensus       426 ~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s--  499 (510)
                      +  .....+......    +..+.++ ++.++++...||..+||.+. ++.....+.. +.+.+..++++|+++.|+.  
T Consensus       351 ~~~~~~~l~~~~~~~----l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  425 (741)
T 1yr2_A          351 STPRFDTVVPESKDN----LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF  425 (741)
T ss_dssp             SSCEEEEEECCCSSE----EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred             CccccEEEecCCCCe----EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence            4  333333333222    2235555 56678888888887777554 4555555654 3567889999999986663  


Q ss_pred             --eeCCCeEEEcC
Q 010470          500 --ADKNGVVCVWT  510 (510)
Q Consensus       500 --~~~dg~i~iwd  510 (510)
                        ....+.|++||
T Consensus       426 ss~~~P~~i~~~d  438 (741)
T 1yr2_A          426 SSFTQPATVLALD  438 (741)
T ss_dssp             EETTEEEEEEEEE
T ss_pred             cCCCCCCEEEEEE
Confidence              23346787775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.67  E-value=1e-14  Score=151.41  Aligned_cols=243  Identities=12%  Similarity=0.085  Sum_probs=159.9

Q ss_pred             ccccceEEEEEecCCCEEEEeeCC-----CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCe-------
Q 010470          223 AHEGGCASILFEYNSARLISGGQD-----KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN-------  290 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------  290 (510)
                      +|...+.+++|||||++|+.++.+     ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            344578899999999999887654     4699999999887543 112223367899999 98988886553       


Q ss_pred             -------EEEEEcCCCCe--eEee--cCCCCceEEEEEecCCCCEEEEEeCCC-----cEEEEECCCC--eEeeeeeecC
Q 010470          291 -------LYVWDVNSGRV--RHTL--TGHTDKVCAVDVSKISSRHVVSAAYDR-----TLKVWDLHKG--YCVNTIIFHS  352 (510)
Q Consensus       291 -------i~iwd~~~~~~--~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~~~~~~~  352 (510)
                             |++|++.++..  ...+  ..+...+.++.|+| ++++|+..+.++     .|.+||+.++  .+...+..+.
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  316 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL  316 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC
Confidence                   89999977652  2223  23334688999999 777777666443     8999999877  3133443332


Q ss_pred             -ceeEEEEcCCCCEEEEecC----CCcEEEEECCCC-ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC-C
Q 010470          353 -NCNALAFSMDGQTIFSGHI----DGNLRLWDIQTG-KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR-S  425 (510)
Q Consensus       353 -~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~-~  425 (510)
                       ..... ++|+|..|+..+.    ++.|.+||+.++ .....+..+....+.++.++ ++.++++...++..+||.+. +
T Consensus       317 ~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  394 (741)
T 1yr2_A          317 KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD  394 (741)
T ss_dssp             SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT
T ss_pred             CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence             33333 3488998887664    345999999875 23333433433567778887 56677888888877776554 3


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCCEEEEE----cCCCeEEEEeCCCcc
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAG----SADGSVYIWSISKAD  473 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~  473 (510)
                      +.....+..+..   ..+..+.++|+++.|+..    ...++|++||+.+++
T Consensus       395 g~~~~~l~~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          395 GKPAGAVSLPGI---GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             SCEEEECBCSSS---CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCceeeccCCCC---eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            444444433211   122347788998866532    235789999998765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.66  E-value=7.4e-14  Score=133.56  Aligned_cols=236  Identities=11%  Similarity=0.104  Sum_probs=163.4

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEe
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCV  345 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~  345 (510)
                      .....++|+++++++++...++.|++||+.++......... .... ++|++ +++.++++..++  .|.+|+...+...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence            46789999999997777777899999999877765555442 3334 88998 777788777765  7999998766543


Q ss_pred             eee----e-ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeee----ecccccccEE-EEEEcCC-CCEEEEEec
Q 010470          346 NTI----I-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE----VAAHSLAAVT-SISLSRS-GNIILTSGR  414 (510)
Q Consensus       346 ~~~----~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~i~-~i~~~~~-~~~l~~~~~  414 (510)
                      ..+    . ....+.+++++|++..|+++..++.|+.||..++.....    .......... .++|+|+ +.++++...
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            333    2 234578999999555555577788999999987653322    1111111123 8999995 556666667


Q ss_pred             CCcEEEEEcCCceeeeEeecCC---C--------eeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCcceeeccccc-
Q 010470          415 DNLHNLFDIRSLEVCGSLRATG---N--------RVASNWSRSCISPDESYVAAGS-ADGSVYIWSISKADIVRTLKEH-  481 (510)
Q Consensus       415 d~~i~i~d~~~~~~~~~~~~~~---~--------~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-  481 (510)
                      ++.|+.|+....  ...+.+..   .        ........++++|+|+++++.+ .++.|+.|++.++... ++.++ 
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~  364 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQV  364 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECT
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCC
Confidence            789999987643  22222221   0        0012245689999999888888 8999999998777643 33222 


Q ss_pred             --------------CcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          482 --------------TAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       482 --------------~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                                    -..+.+++++|+|.++++...++.|+.+
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence                          2458999999998888888888888765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.65  E-value=1.4e-13  Score=126.81  Aligned_cols=233  Identities=15%  Similarity=0.111  Sum_probs=159.7

Q ss_pred             cccccccceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 010470          262 TLYGCLGSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH  340 (510)
Q Consensus       262 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~  340 (510)
                      .+...........|+|+++ ++++...++.|..|+. ++. ...+..+...+.++.+.+ +++++++...++.|.+||..
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC
Confidence            3444455667899999999 4555667889999997 454 344555667789999998 67766665556889999986


Q ss_pred             CCeEeeeeee-----cCceeEEEEcCCCCEEEE----ecC-------------CCcEEEEECCCCceeeeecccccccEE
Q 010470          341 KGYCVNTIIF-----HSNCNALAFSMDGQTIFS----GHI-------------DGNLRLWDIQTGKLLSEVAAHSLAAVT  398 (510)
Q Consensus       341 ~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~i~  398 (510)
                       +........     ...++.++++|+|+++++    |..             .+.|+.||..+++.....  . .....
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~-~~~p~  191 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D-LDHPN  191 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E-ESSEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c-CCCCc
Confidence             553322211     124778999999998886    432             356888888777654433  2 25678


Q ss_pred             EEEEcCCCCEEEEEecC------CcEEEEEcCCceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          399 SISLSRSGNIILTSGRD------NLHNLFDIRSLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      .++|+|+++.|+++...      +.|.+|++......  ..+....   ......++++++|++. +++.+| |.+|+. 
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~---~~~pdgi~~d~~G~lw-v~~~~g-v~~~~~-  265 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP---DGLPDGFCVDRGGWLW-SSSGTG-VCVFDS-  265 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS---SSCCCSEEECTTSCEE-ECCSSE-EEEECT-
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC---CCCCCeEEECCCCCEE-EecCCc-EEEECC-
Confidence            89999999988777665      78999998754311  1111110   1122348899999954 444455 999997 


Q ss_pred             CcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEE
Q 010470          471 KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCV  508 (510)
Q Consensus       471 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  508 (510)
                      .++.+..+..+. .+.+++|+|+++.|+.++.++..++
T Consensus       266 ~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          266 DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            577776666554 5889999999988888877765554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.64  E-value=1.1e-12  Score=120.30  Aligned_cols=235  Identities=10%  Similarity=0.028  Sum_probs=168.3

Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE-eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC  344 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  344 (510)
                      ....+.+++++++|+.+++...++.|.+||.. ++... .+..+...+.++.+.+ ++.++++...++.|..||.. +..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCe
Confidence            34577899999999988877778999999987 65443 2233346788999987 67777776667899999987 554


Q ss_pred             eeeeee---cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          345 VNTIIF---HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       345 ~~~~~~---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      . .+..   ...+.++++.++|.++++...++.|..||.. ++............+.+++++++|+++++...++.|..|
T Consensus        95 ~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           95 T-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             E-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            3 2322   2458899999999988888778899999987 654432222223678999999999977777667899999


Q ss_pred             EcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec-ccccCcCEEEEEEeCCCCcEEEe
Q 010470          422 DIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT-LKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      |. ++.... +.....  ......++++++|.++++....+.|.+|+. ++..... +..+...+.+++++++|.+.++.
T Consensus       173 ~~-~g~~~~-~~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          173 TN-TGKLEE-YPLPTN--AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             CT-TCCEEE-EECSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             CC-CCcEEE-eeCCCC--CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence            98 554433 221111  122345889999988887777888999998 4543322 33345678999999999866666


Q ss_pred             eCCCeEEEcC
Q 010470          501 DKNGVVCVWT  510 (510)
Q Consensus       501 ~~dg~i~iwd  510 (510)
                      ..++.|..||
T Consensus       248 ~~~~~i~~~~  257 (300)
T 2qc5_A          248 WGANQIGRIT  257 (300)
T ss_dssp             TTTTEEEEEC
T ss_pred             cCCCeEEEEC
Confidence            5668888775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.63  E-value=5.6e-13  Score=122.14  Aligned_cols=224  Identities=13%  Similarity=0.083  Sum_probs=152.4

Q ss_pred             ceeEEEEecCCCEE-EEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470          269 SVLDLAITHDNRSV-IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       269 ~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  347 (510)
                      -.-+..|+|++..| ++...++.|+.||..++.. ..+. ....+.++++++ +++++++ . ++.|.+||..++.....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence            44678999965554 4555788999999987765 2333 456799999998 6665444 4 57899999988875443


Q ss_pred             eeec-----CceeEEEEcCCCCEEEEecC-----------CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE
Q 010470          348 IIFH-----SNCNALAFSMDGQTIFSGHI-----------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT  411 (510)
Q Consensus       348 ~~~~-----~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  411 (510)
                      ....     ..++.++++|+|+++++...           .+.|+.+|.. ++... +.... ...+.++|+|+++.|+.
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~-~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQV-DISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEE-SBEEEEEECTTSCEEEE
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-Eeecc-ccccceEEcCCCCEEEE
Confidence            3221     23789999999997665422           2345555543 33332 22222 56789999999987654


Q ss_pred             -EecCCcEEEEEc--CCceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEE
Q 010470          412 -SGRDNLHNLFDI--RSLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVL  486 (510)
Q Consensus       412 -~~~d~~i~i~d~--~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  486 (510)
                       .+.++.|.+|++  .++...  ..+..... .......++++++|++.++...++.|.+||..+++.+..+..+...++
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t  244 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT  244 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence             556789999987  344432  11111110 011233488999999888887788999999988999888887777899


Q ss_pred             EEEEe-CCCCcEEEee
Q 010470          487 SCSWS-GLGKPLASAD  501 (510)
Q Consensus       487 ~~~~~-~~~~~l~s~~  501 (510)
                      +++|. |+++.|+.++
T Consensus       245 ~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          245 SCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEEEESGGGCEEEEEE
T ss_pred             EEEEeCCCCCEEEEEc
Confidence            99998 8887665443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.62  E-value=1.3e-12  Score=119.74  Aligned_cols=227  Identities=12%  Similarity=0.106  Sum_probs=156.1

Q ss_pred             ccccceEEEEEecCC-CEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470          223 AHEGGCASILFEYNS-ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      .+..-.-+..|++++ .++++...++.|..||..++... .+ .....+.+++++++|+++++ . ++.|.+||..+++.
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence            344456688999954 56667777899999999877652 22 34567899999999995544 4 56899999988765


Q ss_pred             eEeecC----CCCceEEEEEecCCCCEEEEEeC-----------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE
Q 010470          302 RHTLTG----HTDKVCAVDVSKISSRHVVSAAY-----------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI  366 (510)
Q Consensus       302 ~~~~~~----~~~~v~~i~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l  366 (510)
                      ......    ....+.++.+.| +++++++...           .+.|..+|.. +...........++.++|+|+++.+
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEE
T ss_pred             EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEE
Confidence            433221    224578899998 6776665422           2345555543 4433333334557899999999876


Q ss_pred             E-EecCCCcEEEEEC--CCCcee-----eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470          367 F-SGHIDGNLRLWDI--QTGKLL-----SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR  438 (510)
Q Consensus       367 ~-~~~~dg~i~i~d~--~~~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  438 (510)
                      + +.+.++.|.+||+  .++...     ..+.... ..+..++++++|++.++...++.|.+||..+++....+..+...
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~  242 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK  242 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence            5 5566789999987  455432     1222222 57889999999998888888889999999988888887765433


Q ss_pred             eecCceeEEEc-CCCCEEEEEcC
Q 010470          439 VASNWSRSCIS-PDESYVAAGSA  460 (510)
Q Consensus       439 ~~~~~~~~~~s-~~~~~l~~~~~  460 (510)
                      .    .+++|. |+++.|++++.
T Consensus       243 ~----t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          243 T----TSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             E----EEEEEESGGGCEEEEEEB
T ss_pred             c----eEEEEeCCCCCEEEEEcC
Confidence            3    348897 88877665553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.61  E-value=4.9e-13  Score=123.07  Aligned_cols=238  Identities=12%  Similarity=0.091  Sum_probs=162.1

Q ss_pred             ceeeccccccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          217 CKHKINAHEGGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      ....+..+.....+..|+|+|+ +++++..++.|..|+. ++. ...+..+...+..++++++|+++++...++.|.+|+
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence            4444555666788999999998 6677777899999998 444 344555667789999999999666655668899999


Q ss_pred             cCCCCeeEeecC----CCCceEEEEEecCCCCEEEE----EeC-------------CCcEEEEECCCCeEeeeeeecCce
Q 010470          296 VNSGRVRHTLTG----HTDKVCAVDVSKISSRHVVS----AAY-------------DRTLKVWDLHKGYCVNTIIFHSNC  354 (510)
Q Consensus       296 ~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~i  354 (510)
                      .. ++.......    ....+.++.+.| ++.++++    |..             .+.|..||..+++..... ....+
T Consensus       114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p  190 (305)
T 3dr2_A          114 AD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP  190 (305)
T ss_dssp             TT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred             CC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence            75 554322211    123466789998 7777776    332             357888888777654444 44557


Q ss_pred             eEEEEcCCCCEEEEecCC------CcEEEEECCCCcee--eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470          355 NALAFSMDGQTIFSGHID------GNLRLWDIQTGKLL--SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~  426 (510)
                      +.++|+|+++.|+++...      +.|.+||+..+...  ..+.....+.+..++++++|++.++ +.+ .|.+|+. .+
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g  267 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DG  267 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TS
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CC
Confidence            899999999988776554      68999998654311  1111111245667899999995544 444 5999998 46


Q ss_pred             eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      +....+..+..     ...++|+++++.|+.++.++ ++.++
T Consensus       268 ~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          268 QLLGHIPTPGT-----ASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             CEEEEEECSSC-----CCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             CEEEEEECCCc-----eeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            66666654432     33488999999888888765 54444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.60  E-value=5.9e-12  Score=116.87  Aligned_cols=221  Identities=15%  Similarity=0.094  Sum_probs=150.9

Q ss_pred             ceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470          227 GCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       227 ~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  305 (510)
                      -..+..|+|++. +++++..++.|..||..++.... + .....+.+++|+|+|+++++. .+ .|.+||..+++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            356788999754 56666678899999998776432 2 234678999999999877654 44 5999999888754332


Q ss_pred             cC----CCCceEEEEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE-ecCCCc
Q 010470          306 TG----HTDKVCAVDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS-GHIDGN  374 (510)
Q Consensus       306 ~~----~~~~v~~i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~  374 (510)
                      ..    ....+.++.++| +++++++...      .+.|..+|  ++............+.++|+|+|+.++. .+.++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            21    124588999998 6666655432      25677777  5654433333345789999999987654 456789


Q ss_pred             EEEEECC--CC-ce-----eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeE
Q 010470          375 LRLWDIQ--TG-KL-----LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS  446 (510)
Q Consensus       375 i~i~d~~--~~-~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  446 (510)
                      |.+||+.  ++ ..     ...+.... ..+.+++++++|+++++...++.|.+||. +++....+..+...    +.++
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~----~~~~  276 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQ----TTCP  276 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSB----EEEE
T ss_pred             EEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCC----cEEE
Confidence            9999986  55 32     12222222 56788999999998887777789999998 56666666544332    3458


Q ss_pred             EEc-CCCCEEEEEcC
Q 010470          447 CIS-PDESYVAAGSA  460 (510)
Q Consensus       447 ~~s-~~~~~l~~~~~  460 (510)
                      +|+ ++++.|++++.
T Consensus       277 af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          277 AFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEESTTSCEEEEEEB
T ss_pred             EEecCCCCEEEEEec
Confidence            887 88877665543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.59  E-value=2.9e-12  Score=118.94  Aligned_cols=221  Identities=12%  Similarity=0.032  Sum_probs=147.8

Q ss_pred             eeEEEEecCCCE-EEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470          270 VLDLAITHDNRS-VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI  348 (510)
Q Consensus       270 v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  348 (510)
                      ..++.|+|++.. +++...++.|..||..+++.. .+. ....+.++.+.+ +++++++. .+ .|.+||..++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            356789998554 455556789999998877543 333 346799999998 66666554 34 5999999888754332


Q ss_pred             eec-----CceeEEEEcCCCCEEEEecC------CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEE-ecCC
Q 010470          349 IFH-----SNCNALAFSMDGQTIFSGHI------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS-GRDN  416 (510)
Q Consensus       349 ~~~-----~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~  416 (510)
                      ...     ..+++++++|+|+++++...      .+.|+.++  +++... +.... .....++|+|+|+.++.+ +.++
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~-~~~~~i~~s~dg~~lyv~~~~~~  201 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADI-SIPNSICFSPDGTTGYFVDTKVN  201 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEE-SSEEEEEECTTSCEEEEEETTTC
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCC-cccCCeEEcCCCCEEEEEECCCC
Confidence            221     24789999999997665432      35677777  454332 22221 457889999999877555 4568


Q ss_pred             cEEEEEcC--Cc-eee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEe
Q 010470          417 LHNLFDIR--SL-EVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS  491 (510)
Q Consensus       417 ~i~i~d~~--~~-~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  491 (510)
                      .|.+||+.  ++ ...  ..+..... .......++++++|.+.++...++.|.+|+. +++.+..+..+...+++++|+
T Consensus       202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             EEEEEEcccccCCcccCceEEEECCC-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence            99999986  44 321  11111000 0011234889999998877766788999998 677777776666779999998


Q ss_pred             -CCCCcEEEee
Q 010470          492 -GLGKPLASAD  501 (510)
Q Consensus       492 -~~~~~l~s~~  501 (510)
                       |++..|+.++
T Consensus       280 g~d~~~L~vt~  290 (326)
T 2ghs_A          280 GPDASRLLVTS  290 (326)
T ss_dssp             STTSCEEEEEE
T ss_pred             cCCCCEEEEEe
Confidence             8887665443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.59  E-value=2.1e-12  Score=122.76  Aligned_cols=258  Identities=13%  Similarity=0.143  Sum_probs=176.1

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCce---
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKV---  312 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v---  312 (510)
                      ++..+++++.++.|..+|..+|+..................  +..+++++.++.|..+|..+|+.+..+.......   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            45678888899999999999998876654432222222232  4578888999999999999999888776432211   


Q ss_pred             --EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCce--------eEEEEcC--CCCEEEEecCCCcEEEEEC
Q 010470          313 --CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC--------NALAFSM--DGQTIFSGHIDGNLRLWDI  380 (510)
Q Consensus       313 --~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i--------~~i~~~~--~~~~l~~~~~dg~i~i~d~  380 (510)
                        .....   .+..++.++.++.+..+|..+|+.+.......+.        ..+...|  .+..+++++.+|.+..+|.
T Consensus       180 ~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~  256 (376)
T 3q7m_A          180 GESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL  256 (376)
T ss_dssp             CCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred             CCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence              11222   2456788888999999999999988776543210        0011111  3567788888999999999


Q ss_pred             CCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC
Q 010470          381 QTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA  460 (510)
Q Consensus       381 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  460 (510)
                      .+++.+......   ....+..  ++..+++++.++.+..+|..+++..............   ...+  .+..|++++.
T Consensus       257 ~tG~~~w~~~~~---~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~---~~~~--~~~~l~v~~~  326 (376)
T 3q7m_A          257 RSGQIMWKRELG---SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLT---SPVL--YNGNLVVGDS  326 (376)
T ss_dssp             TTCCEEEEECCC---CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCC---CCEE--ETTEEEEECT
T ss_pred             CCCcEEeeccCC---CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCccc---CCEE--ECCEEEEEeC
Confidence            999988776543   2344443  4678888888999999999999887666522222111   1122  3567888899


Q ss_pred             CCeEEEEeCCCcceeecccccCcCEEE-EEEeCCCCcEEEeeCCCeEEEcC
Q 010470          461 DGSVYIWSISKADIVRTLKEHTAPVLS-CSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       461 dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|.|+++|..+++.+.........+.+ ...  .+..|+.++.+|.|+.|+
T Consensus       327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            999999999999988776553333322 222  245788888999998875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.59  E-value=5.2e-14  Score=131.32  Aligned_cols=173  Identities=12%  Similarity=0.090  Sum_probs=135.9

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc---------cee-cccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGS---------LSS-TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      .++.+++++...++++|+.++ +.+|++.+..         ... ....+.. |+.++|  |+++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            689999999999999999885 6669865433         111 1224556 999999  89999998 8899999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEE
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLR  376 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~  376 (510)
                      .+.........|...+.++.+.+.   .+++++.||.|.+||+.++....   ....++|++|+|+|  ++.|..||+++
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             hhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            887766667778888888877662   38888999999999999877643   34579999999999  67889999999


Q ss_pred             EEECCCCce--eeee------cc--cccccEEEEEEcCCCCEEEEE
Q 010470          377 LWDIQTGKL--LSEV------AA--HSLAAVTSISLSRSGNIILTS  412 (510)
Q Consensus       377 i~d~~~~~~--~~~~------~~--~~~~~i~~i~~~~~~~~l~~~  412 (510)
                      +|+...+..  ...+      ..  .+...|.+|.|.+++.++++-
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            999877664  4445      21  123789999999999988873

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.58  E-value=8.6e-13  Score=134.62  Aligned_cols=255  Identities=12%  Similarity=0.118  Sum_probs=173.9

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceeccccc--c---cceeE-EEEecCCCEEEEEe------CCCeEEEEEcCCCCeeE
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGC--L---GSVLD-LAITHDNRSVIAAS------SSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~-~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~  303 (510)
                      ++..+++++.|+.|..+|..+|+.+..+...  .   ..+.+ ..+ .++ .+++++      .+|.|+.||..+|+.+.
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  197 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW  197 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence            3568888999999999999999987665432  1   11111 111 144 444443      36899999999999887


Q ss_pred             eecCCC-------------------------------CceEEEEEecCCCCEEEEEeCCCc-------------------
Q 010470          304 TLTGHT-------------------------------DKVCAVDVSKISSRHVVSAAYDRT-------------------  333 (510)
Q Consensus       304 ~~~~~~-------------------------------~~v~~i~~~~~~~~~l~s~~~dg~-------------------  333 (510)
                      .+....                               .....+.+.| ..+.++.++.++.                   
T Consensus       198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~  276 (689)
T 1yiq_A          198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS  276 (689)
T ss_dssp             EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred             EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            765210                               0112467777 6678888877763                   


Q ss_pred             EEEEECCCCeEeeeeeec-C---------ceeEEEEcCCCC---EEEEecCCCcEEEEECCCCceeeeeccccc------
Q 010470          334 LKVWDLHKGYCVNTIIFH-S---------NCNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHSL------  394 (510)
Q Consensus       334 i~iwd~~~~~~~~~~~~~-~---------~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------  394 (510)
                      |..||..+|+.+..+... .         .+....+..+|.   .++.++.+|.++++|..+|+.+........      
T Consensus       277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~  356 (689)
T 1yiq_A          277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM  356 (689)
T ss_dssp             EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc
Confidence            999999999998887642 1         112222223565   788999999999999999998743321110      


Q ss_pred             --------------------------------ccEEEEEEcCCCCEEEEEec----------------------------
Q 010470          395 --------------------------------AAVTSISLSRSGNIILTSGR----------------------------  414 (510)
Q Consensus       395 --------------------------------~~i~~i~~~~~~~~l~~~~~----------------------------  414 (510)
                                                      ..-..++|+|+..++++...                            
T Consensus       357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  436 (689)
T 1yiq_A          357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT  436 (689)
T ss_dssp             ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred             CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence                                            00113688888888776532                            


Q ss_pred             -----------------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470          415 -----------------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT  477 (510)
Q Consensus       415 -----------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  477 (510)
                                       +|.|..||+.+++....+..+.....     ..++..+.++++|+.||.|+.||..+|+.+..
T Consensus       437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~-----g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~  511 (689)
T 1yiq_A          437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG-----GTLSTAGNLVFEGSADGRVIAYAADTGEKLWE  511 (689)
T ss_dssp             CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC-----CEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC-----ccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence                             37799999999999888766543222     24566788999999999999999999999988


Q ss_pred             ccccCcC-EEEEEEeCCCCcEE
Q 010470          478 LKEHTAP-VLSCSWSGLGKPLA  498 (510)
Q Consensus       478 ~~~~~~~-v~~~~~~~~~~~l~  498 (510)
                      ++...+. ..-+.|..+|+..+
T Consensus       512 ~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          512 QPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             EECSSCCCSCCEEEEETTEEEE
T ss_pred             eeCCCCcccCceEEEECCEEEE
Confidence            8654322 23466778887443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.57  E-value=2.6e-13  Score=138.17  Aligned_cols=268  Identities=13%  Similarity=0.169  Sum_probs=190.4

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceeccccccc-----------ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLG-----------SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  305 (510)
                      +..+++++.++.|.-+|..+|+.+..+.....           ....+++  ++..+++++.|+.|..+|..+|+.+..+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            55777778889999999999998776553321           0122333  4678889999999999999999999888


Q ss_pred             cCC-C----CceEE-EEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecCc--------------------
Q 010470          306 TGH-T----DKVCA-VDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHSN--------------------  353 (510)
Q Consensus       306 ~~~-~----~~v~~-i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~--------------------  353 (510)
                      ..+ .    ..+.+ ..+   .+..++.++.      +|.|..||..+|+.+..+.....                    
T Consensus       155 ~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~  231 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP  231 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred             cCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence            754 1    11211 111   1345555543      68999999999998887754221                    


Q ss_pred             -------------eeEEEEcCCCCEEEEecCCC-------------------cEEEEECCCCceeeeecccc--------
Q 010470          354 -------------CNALAFSMDGQTIFSGHIDG-------------------NLRLWDIQTGKLLSEVAAHS--------  393 (510)
Q Consensus       354 -------------i~~i~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~--------  393 (510)
                                   ...++++|++..+++++.++                   .|..+|..+|+....+....        
T Consensus       232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~  311 (677)
T 1kb0_A          232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS  311 (677)
T ss_dssp             GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence                         13578889899998887664                   49999999999988776432        


Q ss_pred             cccEEEEEEcCCC---CEEEEEecCCcEEEEEcCCceeeeEeecCCCe-----------e--------------------
Q 010470          394 LAAVTSISLSRSG---NIILTSGRDNLHNLFDIRSLEVCGSLRATGNR-----------V--------------------  439 (510)
Q Consensus       394 ~~~i~~i~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------~--------------------  439 (510)
                      ...+..+....+|   ..+++++.+|.++++|..+++.+..+......           +                    
T Consensus       312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G  391 (677)
T 1kb0_A          312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG  391 (677)
T ss_dssp             CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred             CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc
Confidence            1223334444577   68999999999999999999987766532110           0                    


Q ss_pred             ecCceeEEEcCCCCEEEEEcC-------------------------------------------CCeEEEEeCCCcceee
Q 010470          440 ASNWSRSCISPDESYVAAGSA-------------------------------------------DGSVYIWSISKADIVR  476 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~-------------------------------------------dg~i~iwd~~~~~~~~  476 (510)
                      ...|..++++|++.++++...                                           .|.|..||+.+++.+.
T Consensus       392 ~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W  471 (677)
T 1kb0_A          392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW  471 (677)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe
Confidence            112345789999888877543                                           2789999999999888


Q ss_pred             cccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          477 TLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       477 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+.. ..++.+..+...+..+++++.||.+++||
T Consensus       472 ~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          472 SVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             EEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             ecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence            7763 34455556677788888899999999986

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.57  E-value=2e-13  Score=127.13  Aligned_cols=247  Identities=10%  Similarity=-0.007  Sum_probs=170.5

Q ss_pred             eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----------CCCeEEEEEcCCCCeeEeecCC-------CC
Q 010470          248 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SSNNLYVWDVNSGRVRHTLTGH-------TD  310 (510)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~  310 (510)
                      .|.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.+||+.+++.+.++..+       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8889999999999988765555  799999999999987          3689999999999999888643       13


Q ss_pred             ceEEEEEecCCCCEEEEEeC--CCcEEE--EECCCCeEeeeeeecCceeEEEEcCCC-CEEEEecCCCcEEEEECCC---
Q 010470          311 KVCAVDVSKISSRHVVSAAY--DRTLKV--WDLHKGYCVNTIIFHSNCNALAFSMDG-QTIFSGHIDGNLRLWDIQT---  382 (510)
Q Consensus       311 ~v~~i~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~---  382 (510)
                      ....+.++| ++++++++..  +..+.+  +|+.+   +..+.....   +.+.|+| ..+++.+.||.+.+.|+.+   
T Consensus       125 ~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          125 RVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             CcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence            456789999 7777777654  467888  99876   444443322   2234544 3455667788888899876   


Q ss_pred             --Cceee----eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce--eeeEeecC------CCeeecCceeEEE
Q 010470          383 --GKLLS----EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE--VCGSLRAT------GNRVASNWSRSCI  448 (510)
Q Consensus       383 --~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~------~~~~~~~~~~~~~  448 (510)
                        ++...    .+.... .+.   . ++++..++..+. +.+.+.|+.+..  ....+...      .......+..+++
T Consensus       198 ~~~~v~~~~t~~i~vg~-~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~  271 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSS-QAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CCEECCCCSCTTSCBCS-CCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             cCCeEEEEeeeeeeCCC-Ccc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence              44331    111111 333   3 566666666556 999999986532  22322211      1112222223689


Q ss_pred             cCCCCEEEEEcC---------CCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc-EEEee-CCCeEEEcC
Q 010470          449 SPDESYVAAGSA---------DGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP-LASAD-KNGVVCVWT  510 (510)
Q Consensus       449 s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~-~dg~i~iwd  510 (510)
                      +|+++.++++..         ++.+.++|+.+++.+..+.... ...+++|+|||+. +++.. .++.|.++|
T Consensus       272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            999998887543         2356799999999999887544 5789999999984 56666 589999986

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.57  E-value=1.2e-13  Score=128.54  Aligned_cols=259  Identities=8%  Similarity=-0.045  Sum_probs=174.5

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceeccccc-------ccceeEEEEec
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGC-------LGSVLDLAITH  277 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~  277 (510)
                      .+.+.++..-..+  .+.|+|||++++++.          .++.|.+||+.+++.+.++...       ......++++|
T Consensus        56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp  133 (368)
T 1mda_H           56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA  133 (368)
T ss_dssp             TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred             CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence            3455556544455  799999999998886          3688999999999998887533       13467899999


Q ss_pred             CCCEEEEEeC--CCeEEE--EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-----CeEeee-
Q 010470          278 DNRSVIAASS--SNNLYV--WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-----GYCVNT-  347 (510)
Q Consensus       278 ~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~-  347 (510)
                      ||++++++..  ++.|.+  +|..+   +..+.... .   +.+.|.....+++.+.||.+.+.|+.+     ++.... 
T Consensus       134 DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~  206 (368)
T 1mda_H          134 SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence            9999999874  467888  88876   34443211 1   123343456667777899999999986     443311 


Q ss_pred             ---eeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCc--eeeeeccc------c---cccEEEEEEcCCCCEEEEEe
Q 010470          348 ---IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK--LLSEVAAH------S---LAAVTSISLSRSGNIILTSG  413 (510)
Q Consensus       348 ---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~------~---~~~i~~i~~~~~~~~l~~~~  413 (510)
                         +.....+.  . .+++..++..+. +.|.+.|..+..  .+..+...      .   ......+.++|+++.++++.
T Consensus       207 t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~  282 (368)
T 1mda_H          207 TGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             CTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             eeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence               11112222  3 566666665555 899999986532  22222211      0   01112268999999888764


Q ss_pred             c---------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE-EEEEc-CCCeEEEEeCCCcceeecccccC
Q 010470          414 R---------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY-VAAGS-ADGSVYIWSISKADIVRTLKEHT  482 (510)
Q Consensus       414 ~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~~~  482 (510)
                      .         ++.+.++|+.+.+.+..+.....+     ..++|+|||++ +++.. .++.|.++|+.+++.+.++....
T Consensus       283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p-----~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~  357 (368)
T 1mda_H          283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDS-----DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCCEEECCEEEEEE-----CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             ccccCcccccCCCEEEEECCCCeEEEEEECCCCc-----ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence            3         235669999999988887655432     34899999984 55555 58999999999999999987654


Q ss_pred             cCEEEEEEeC
Q 010470          483 APVLSCSWSG  492 (510)
Q Consensus       483 ~~v~~~~~~~  492 (510)
                      . ..++++.+
T Consensus       358 ~-P~~i~~~~  366 (368)
T 1mda_H          358 G-PESLSVQN  366 (368)
T ss_dssp             C-CCEEECCC
T ss_pred             C-CCEEEeec
Confidence            4 35666543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.56  E-value=5.8e-17  Score=153.19  Aligned_cols=255  Identities=15%  Similarity=0.047  Sum_probs=144.4

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCc-eE-
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK-VC-  313 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~-  313 (510)
                      ++..+++++.||.|..||..+|+.+..+..  +.+.+..+.+++..+++++.||.|+.||..+|+.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577999999999999999999999877765  55656666677878888889999999999999877666543211 10 


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc
Q 010470          314 AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS  393 (510)
Q Consensus       314 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  393 (510)
                      +..+.  .+..+++++.++.|+.||..+|+.+..+..+..   ..++|++..+++++.+|.|+.||.++|+.+..+....
T Consensus        86 sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence            00111  345677888899999999999998887765542   3456788899999999999999999998877665321


Q ss_pred             cccEEEEEEcCCC---CEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE----EEEcCCCeEEE
Q 010470          394 LAAVTSISLSRSG---NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV----AAGSADGSVYI  466 (510)
Q Consensus       394 ~~~i~~i~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l----~~~~~dg~i~i  466 (510)
                         .....++++.   ..+++++.+|.+..||..+++....+........    ...++++|...    +.+  ++.++.
T Consensus       161 ---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~----~~~~~~dg~~~v~~~~~~--~~~l~~  231 (369)
T 2hz6_A          161 ---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVA----FYVWQREGLRKVMHINVA--VETLRY  231 (369)
T ss_dssp             ---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEE----EEECTTSSCEEECCEEEE--HHHHHH
T ss_pred             ---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEE----EEEecCCceEeccceeec--ccceee
Confidence               2223334432   5677888999999999999998777664332221    23455666432    122  345677


Q ss_pred             EeCCCcc----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          467 WSISKAD----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       467 wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      +|..+|+    .+..+.... .+.+..  -.+..|+.++.||.++.+
T Consensus       232 ld~~tG~~~~~~~W~~~~~~-~~~sp~--~~~g~lyv~~~~G~l~al  275 (369)
T 2hz6_A          232 LTFMSGEVGRITKWKYPFPK-ETEAKS--KLTPTLYVGKYSTSLYAS  275 (369)
T ss_dssp             HHHHHHHHHHHHTSCCCCCC-HHHHHH--HSEEEECBEECSSCEECC
T ss_pred             eehhcCCcccceeeeeccCc-cccccc--cccceEEEecccCCEEec
Confidence            7776666    444433211 110000  112355666666666554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.55  E-value=2.6e-12  Score=130.86  Aligned_cols=257  Identities=11%  Similarity=0.110  Sum_probs=178.3

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceeccccc-c----cceeEEEEecCCCEEEEEeC------CCeEEEEEcCCCCeeEe
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGC-L----GSVLDLAITHDNRSVIAASS------SNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~  304 (510)
                      ++..+++++.|+.|..+|..+|+.+..+..+ .    ..+.+--.. .+..+++++.      ++.|+.||..+|+.+..
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            3568888899999999999999987776543 1    122211111 2345555553      68999999999998887


Q ss_pred             ecCCCCc--------------------------------eEEEEEecCCCCEEEEEeCCC-------------------c
Q 010470          305 LTGHTDK--------------------------------VCAVDVSKISSRHVVSAAYDR-------------------T  333 (510)
Q Consensus       305 ~~~~~~~--------------------------------v~~i~~~~~~~~~l~s~~~dg-------------------~  333 (510)
                      +......                                ...+.+.| ..+.++.++.++                   .
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            7542211                                12467777 567777776554                   5


Q ss_pred             EEEEECCCCeEeeeeeecC----------ceeEEEEcCCC---CEEEEecCCCcEEEEECCCCceeeeeccccc------
Q 010470          334 LKVWDLHKGYCVNTIIFHS----------NCNALAFSMDG---QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL------  394 (510)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~----------~i~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------  394 (510)
                      |..+|..+|+.+..+....          .+..+....+|   ..+++++.+|.|+++|..+|+.+..+.....      
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY  364 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence            9999999999988876421          12333333477   6889999999999999999998876653210      


Q ss_pred             ----ccE------------------------EEEEEcCCCCEEEEEecC-------------------------------
Q 010470          395 ----AAV------------------------TSISLSRSGNIILTSGRD-------------------------------  415 (510)
Q Consensus       395 ----~~i------------------------~~i~~~~~~~~l~~~~~d-------------------------------  415 (510)
                          .++                        ..++|+|++.++++...+                               
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence                011                        156889998888775432                               


Q ss_pred             ------------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccC-
Q 010470          416 ------------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHT-  482 (510)
Q Consensus       416 ------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  482 (510)
                                  |.|..||+.+++....+........     ..++.++..+++++.||.+++||..+++.+..+.... 
T Consensus       445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~-----g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  519 (677)
T 1kb0_A          445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNG-----GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (677)
T ss_dssp             EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCC-----CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcC-----cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence                        6799999999998887765432221     3456678888889999999999999999998886433 


Q ss_pred             cCEEEEEEeCCCCcEEE
Q 010470          483 APVLSCSWSGLGKPLAS  499 (510)
Q Consensus       483 ~~v~~~~~~~~~~~l~s  499 (510)
                      ....-+.|.++|+.+++
T Consensus       520 ~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          520 VVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CCSCCEEEEETTEEEEE
T ss_pred             cccCCEEEEeCCEEEEE
Confidence            22233556778875443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.55  E-value=6.6e-13  Score=136.44  Aligned_cols=240  Identities=13%  Similarity=0.099  Sum_probs=154.9

Q ss_pred             ccccceEEEEEecCCCEEEEe-----eCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC--------
Q 010470          223 AHEGGCASILFEYNSARLISG-----GQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN--------  289 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------  289 (510)
                      +|...+..++|||||++||.+     +....|++||+.+++.+... .+......++|+ ||+.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            466679999999999998843     33357999999999864431 111113578999 999999988774        


Q ss_pred             -----eEEEEEcCCCCe----eEeecC-CCCceEEEEEecCCCCEEEE-EeC---CCcEEEEECCCCe-EeeeeeecCc-
Q 010470          290 -----NLYVWDVNSGRV----RHTLTG-HTDKVCAVDVSKISSRHVVS-AAY---DRTLKVWDLHKGY-CVNTIIFHSN-  353 (510)
Q Consensus       290 -----~i~iwd~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~l~s-~~~---dg~i~iwd~~~~~-~~~~~~~~~~-  353 (510)
                           .|++|++.++..    +..... |...+.++.|+| ++.+|+. .+.   ++.|.++|+.++. ....+..+.. 
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                 499999987652    333333 445678899999 6666543 332   3589999997763 3334443333 


Q ss_pred             eeEEEEcCCCCEEEE-ecC---CCcEEEEECCCCce--eeeecccccccEEEEEEcCCCCEEEEEecCC---cEEEEEcC
Q 010470          354 CNALAFSMDGQTIFS-GHI---DGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDN---LHNLFDIR  424 (510)
Q Consensus       354 i~~i~~~~~~~~l~~-~~~---dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~i~d~~  424 (510)
                      .... ++++|..|+. ...   .+.|..+|+.++..  ...+..+. ..+.  .|+++++.|+....++   .|.+||+.
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER-QQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC-CCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            3333 6666666554 333   36799999987654  23444444 3333  8899999887776544   68899987


Q ss_pred             CceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC----CeEEEEeCCCcc
Q 010470          425 SLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD----GSVYIWSISKAD  473 (510)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~  473 (510)
                      .+.. ..+......   .+..+.+++++..|+....+    +.|+.||+.+++
T Consensus       359 g~~~-~~l~~p~~~---~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          359 GKRV-REVALPGLG---SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             SCEE-EEECCSSSS---EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCee-EEeecCCCc---eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            5443 333322211   12224567788776655444    789999987765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.54  E-value=9.2e-13  Score=134.40  Aligned_cols=271  Identities=13%  Similarity=0.169  Sum_probs=185.6

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccccc----------e-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS----------V-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  305 (510)
                      +..+++++.++.|.-+|..+|+.+..+......          + ..+.+  .+..+++++.|+.|..+|..+|+.+..+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            567888888999999999999987766432210          0 11222  3667889999999999999999998877


Q ss_pred             cCC--CCceEEEEEecC-CCCEEEEEe------CCCcEEEEECCCCeEeeeeeecC------------------------
Q 010470          306 TGH--TDKVCAVDVSKI-SSRHVVSAA------YDRTLKVWDLHKGYCVNTIIFHS------------------------  352 (510)
Q Consensus       306 ~~~--~~~v~~i~~~~~-~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~------------------------  352 (510)
                      ...  ......+...|. .+..++.++      .+|.|..||..+|+.+..+....                        
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            642  111111111110 123444443      36899999999999887765210                        


Q ss_pred             --------ceeEEEEcCCCCEEEEecCCCc-------------------EEEEECCCCceeeeecccc--------cccE
Q 010470          353 --------NCNALAFSMDGQTIFSGHIDGN-------------------LRLWDIQTGKLLSEVAAHS--------LAAV  397 (510)
Q Consensus       353 --------~i~~i~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~--------~~~i  397 (510)
                              ....++++|++..+++++.++.                   |..||..+|+.+..+...+        ..++
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence                    0135788898899999887764                   9999999999988776421        0122


Q ss_pred             EEEEEcCCCC---EEEEEecCCcEEEEEcCCceeeeEeecCCC-----------------------------------ee
Q 010470          398 TSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN-----------------------------------RV  439 (510)
Q Consensus       398 ~~i~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------------------------------~~  439 (510)
                      ....+..+|.   .++.++.+|.++++|..+++.+........                                   .-
T Consensus       308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G  387 (689)
T 1yiq_A          308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG  387 (689)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred             EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence            2233333565   788999999999999999988743322110                                   00


Q ss_pred             ecCceeEEEcCCCCEEEEEcC---------------------------------------------CCeEEEEeCCCcce
Q 010470          440 ASNWSRSCISPDESYVAAGSA---------------------------------------------DGSVYIWSISKADI  474 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~---------------------------------------------dg~i~iwd~~~~~~  474 (510)
                      ...|..++++|+..++++...                                             +|.|..||+.+++.
T Consensus       388 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~  467 (689)
T 1yiq_A          388 AHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA  467 (689)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE
T ss_pred             ccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe
Confidence            112445789998888877532                                             37899999999999


Q ss_pred             eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       475 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +..+..+. ++..-.++..+..+++++.||.|+.||
T Consensus       468 ~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          468 AWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYA  502 (689)
T ss_dssp             EEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             EeEccCCC-CccCccceECCCEEEEECCCCcEEEEE
Confidence            88876543 334445666778899999999999986

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.53  E-value=2.6e-12  Score=119.60  Aligned_cols=269  Identities=14%  Similarity=0.098  Sum_probs=178.8

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      ....+..+...+.++.+.++|. |+.++.+  |..||. +++....+...........+.  +..+++++.++.|..+|.
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~  124 (330)
T 3hxj_A           51 VKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINT  124 (330)
T ss_dssp             EEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECT
T ss_pred             EEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcC
Confidence            3444444555567777777774 5555544  888886 676655554443333444444  566888888999999998


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcE
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                      . ++....+..+...+.++...+  +..++.++.++.|..||.. +.....+.... .+.++.+.+++..++ ++  +.|
T Consensus       125 ~-g~~~~~~~~~~~~~~~~~~~~--~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l  197 (330)
T 3hxj_A          125 D-GTEKWRFKTKKAIYATPIVSE--DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKV  197 (330)
T ss_dssp             T-SCEEEEEECSSCCCSCCEECT--TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSE
T ss_pred             C-CCEEEEEcCCCceeeeeEEcC--CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEE
Confidence            8 877777665555566666654  3446777778999999998 77766665543 366777777777554 44  789


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEE
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  455 (510)
                      ..|| .+++....+.... ..+.++..+++|. +++++.++.+..+|. ++.....+........    .+.+.++| .|
T Consensus       198 ~~~d-~~g~~~~~~~~~~-~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~----~~~~~~~g-~l  268 (330)
T 3hxj_A          198 YAIN-PDGTEKWNFYAGY-WTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIES----SPVIGNTD-TI  268 (330)
T ss_dssp             EEEC-TTSCEEEEECCSS-CCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCS----CCEECTTS-CE
T ss_pred             EEEC-CCCcEEEEEccCC-cceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccc----cceEcCCC-eE
Confidence            9999 7777776666544 5677888888875 455666778888875 4555555543332222    24455555 46


Q ss_pred             EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          456 AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       456 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ++++.+|.|..+|. +++.+..+......+.++...++|. |..++.+|.+++.
T Consensus       269 ~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~  320 (330)
T 3hxj_A          269 YFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL  320 (330)
T ss_dssp             EEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred             EEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence            66777888999995 6777666655555677777777775 6668889988763

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.52  E-value=5.1e-12  Score=120.02  Aligned_cols=259  Identities=12%  Similarity=0.085  Sum_probs=173.7

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceeccccc---------ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGC---------LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  306 (510)
                      .+..+++++.++.|..||..+|+.+......         ...+.+ ....++..+++++.++.|..+|..+|+.+..+.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            3568888888999999999999887655432         122222 222346678889999999999999999887776


Q ss_pred             CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCce------eEEEEcCCCCEEEEecCCCcEEEEEC
Q 010470          307 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC------NALAFSMDGQTIFSGHIDGNLRLWDI  380 (510)
Q Consensus       307 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i------~~i~~~~~~~~l~~~~~dg~i~i~d~  380 (510)
                      ..........+   .+..++.++.++.|..+|..+|+.+..+.....+      ....+  .+..+++++.+|.|..+|.
T Consensus       131 ~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          131 VAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             CSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEET
T ss_pred             CCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEEC
Confidence            44332222222   2457888888999999999999988877665432      22222  2456788888999999999


Q ss_pred             CCCceeeeecccccccE---E---EEEEcC--CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC
Q 010470          381 QTGKLLSEVAAHSLAAV---T---SISLSR--SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE  452 (510)
Q Consensus       381 ~~~~~~~~~~~~~~~~i---~---~i~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  452 (510)
                      .+++.............   .   .+...|  .+..+++++.++.+..+|..+++.........  .    ..+  ..++
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~--~----~~~--~~~~  277 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS--V----NDF--IVDG  277 (376)
T ss_dssp             TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC--E----EEE--EEET
T ss_pred             CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC--C----CCc--eEEC
Confidence            99998877654321000   0   011111  35678888889999999999998876654321  1    112  2346


Q ss_pred             CEEEEEcCCCeEEEEeCCCcceeecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          453 SYVAAGSADGSVYIWSISKADIVRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       453 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..+++++.+|.|..+|..+++.+..... ....+......  +..|+.++.+|.|..||
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d  334 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN  334 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence            7788888899999999999988766542 12222223332  45788888888888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.52  E-value=1.6e-12  Score=125.64  Aligned_cols=217  Identities=12%  Similarity=0.126  Sum_probs=157.1

Q ss_pred             CCCEEEEEeC-CCeEEEEEcCCCCeeEeecCC-CCceEEEEE-e-cCCCCEEEEEe------------------CCCcEE
Q 010470          278 DNRSVIAASS-SNNLYVWDVNSGRVRHTLTGH-TDKVCAVDV-S-KISSRHVVSAA------------------YDRTLK  335 (510)
Q Consensus       278 ~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~i~~-~-~~~~~~l~s~~------------------~dg~i~  335 (510)
                      ||+++++... ++.|.+.|+.+.++...+.-. ...+..+++ . | ++.++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence            8888888775 557999999999987755422 245778887 3 6 777777774                  356899


Q ss_pred             EEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCC--------------------------------------cEEE
Q 010470          336 VWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG--------------------------------------NLRL  377 (510)
Q Consensus       336 iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--------------------------------------~i~i  377 (510)
                      ++|..+.+...++........++++|+|+++++.+.+.                                      .|.+
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            99999999999998877888899999999999877443                                      4777


Q ss_pred             EECCC--Cce-eeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCce------------eeeEeecCCCeeec
Q 010470          378 WDIQT--GKL-LSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLE------------VCGSLRATGNRVAS  441 (510)
Q Consensus       378 ~d~~~--~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~  441 (510)
                      .|.++  ++. +..+...  ....++.++|||+++++++ .+++|.++|+.+.+            .........     
T Consensus       259 ID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~-----  331 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-----  331 (595)
T ss_dssp             EECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS-----
T ss_pred             EeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC-----
Confidence            77776  444 4444443  4677899999999877765 66899999999653            222222222     


Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEeCCC----------cceeecccccCcCE-----EEEEEeCCCCcEEEeeC
Q 010470          442 NWSRSCISPDESYVAAGSADGSVYIWSISK----------ADIVRTLKEHTAPV-----LSCSWSGLGKPLASADK  502 (510)
Q Consensus       442 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~  502 (510)
                      ....++|+|+|...++..-|+.|.+||+.+          ...+..+..|..+-     .++.++|||++|+++..
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            233489999995455666799999999987          45566665554332     12245799999988654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=4.4e-13  Score=125.04  Aligned_cols=171  Identities=15%  Similarity=0.087  Sum_probs=131.3

Q ss_pred             ceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-----------EeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 010470          311 KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY-----------CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWD  379 (510)
Q Consensus       311 ~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d  379 (510)
                      .+..+++++ ...++++|+.+ .+.+|++.+..           .......+. |+.++|  ++++|+++ .+|.|++||
T Consensus        39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688899998 78889999877 46669865322           122334445 999999  99999999 889999999


Q ss_pred             CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      +++.........+. .++.++.+.+.  .+++++.||.+.+||+.++....        ....+++++|||+|  ++.|.
T Consensus       113 v~sl~~~~~~~~~~-~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--------~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          113 LEELSEFRTVTSFE-KPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--------LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             SSSTTCEEEEEECS-SCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--------EEESEEEEEECSSE--EEEEE
T ss_pred             chhhhccCccceee-cceeeEEecCC--CEEEEECCCCEEEEEccCCcccc--------ccCCceEEEEcCCc--eEEEE
Confidence            98776555555544 56778777654  38888999999999999776542        23456779999999  67888


Q ss_pred             CCCeEEEEeCCCcce--eecc------c---ccCcCEEEEEEeCCCCcEEEe
Q 010470          460 ADGSVYIWSISKADI--VRTL------K---EHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       460 ~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      .||++++|+...+..  ..++      .   +|...|.++.|.+++.++++-
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            999999998877664  4444      2   367889999999999888763

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.49  E-value=3.2e-11  Score=112.63  Aligned_cols=226  Identities=11%  Similarity=0.103  Sum_probs=154.6

Q ss_pred             EEe--cCCCEEEEEe-CCCeEEEEEcCCC----CeeEeec-------CCCCceEEEEEecCCCCEEEEEeCC------Cc
Q 010470          274 AIT--HDNRSVIAAS-SSNNLYVWDVNSG----RVRHTLT-------GHTDKVCAVDVSKISSRHVVSAAYD------RT  333 (510)
Q Consensus       274 ~~~--~~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~~-------~~~~~v~~i~~~~~~~~~l~s~~~d------g~  333 (510)
                      .++  +++++|++.+ .++.|+++|+.+.    +...++.       ........+.+.| ++ +++++..+      |.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence            346  7888888766 6789999998755    4555552       1112456677888 56 66666555      78


Q ss_pred             EEEEECCCCeEeeeeeecCc----eeEEEEcCCCCEEEEec-------------------CCCcEEEEECCCCceeeeec
Q 010470          334 LKVWDLHKGYCVNTIIFHSN----CNALAFSMDGQTIFSGH-------------------IDGNLRLWDIQTGKLLSEVA  390 (510)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~~----i~~i~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~  390 (510)
                      |.++|..+++.+..+.....    ...+.|+|+++.+++..                   .+..|.+||+.+++.+..+.
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence            99999999999988874422    34588899999888874                   36799999999988888777


Q ss_pred             cc-ccccEEEEEE--cCCCCEEEEEec------CCcEEEEEcCCce--eeeEeecCCCe--------------eecCcee
Q 010470          391 AH-SLAAVTSISL--SRSGNIILTSGR------DNLHNLFDIRSLE--VCGSLRATGNR--------------VASNWSR  445 (510)
Q Consensus       391 ~~-~~~~i~~i~~--~~~~~~l~~~~~------d~~i~i~d~~~~~--~~~~~~~~~~~--------------~~~~~~~  445 (510)
                      .. .......+.|  +|+++++++++.      ++.|.+|....+.  ....+......              .......
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            64 2234556666  999999888774      5678776654432  11221111100              0123455


Q ss_pred             EEEcCCCCEEEEEcC-CCeEEEEeCCC---cceeecccccC--------------cCEEEEEEeCCCCcEEEee
Q 010470          446 SCISPDESYVAAGSA-DGSVYIWSISK---ADIVRTLKEHT--------------APVLSCSWSGLGKPLASAD  501 (510)
Q Consensus       446 ~~~s~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~s~~  501 (510)
                      +.+|+||++|+++.. .+.|.+||+..   .+.+..+....              +....++++|||++|+++.
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            889999999888765 68999999863   23444433210              1357899999999988877

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.48  E-value=7.1e-13  Score=123.47  Aligned_cols=258  Identities=16%  Similarity=0.119  Sum_probs=168.8

Q ss_pred             EEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC
Q 010470          229 ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH  308 (510)
Q Consensus       229 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  308 (510)
                      .+..++.+| .++.++.++.|..|| .+++...........+.++...+++. +++++.+  |..||. +++....+...
T Consensus        23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~   96 (330)
T 3hxj_A           23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTK   96 (330)
T ss_dssp             CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-
T ss_pred             cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECC
Confidence            344555555 567777888999999 88887766665555667777776665 4445444  888885 66655544433


Q ss_pred             CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceee
Q 010470          309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS  387 (510)
Q Consensus       309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  387 (510)
                      ........+.   +..++.++.++.|..+|.. +........... +.++...+++. +++++.++.|..||.. ++...
T Consensus        97 ~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~  170 (330)
T 3hxj_A           97 KAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKW  170 (330)
T ss_dssp             ----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEE
T ss_pred             CCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeE
Confidence            3323333332   4667788889999999998 776666654433 56677776776 5567778999999988 87776


Q ss_pred             eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEE
Q 010470          388 EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIW  467 (510)
Q Consensus       388 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw  467 (510)
                      .+.... ..+.++.+.+++.+++.+   +.+..|| .+++....+......    +..+.++++|.+ ++++.++.|..+
T Consensus       171 ~~~~~~-~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~----~~~~~~~~~g~l-~v~t~~~gl~~~  240 (330)
T 3hxj_A          171 RFKTND-AITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWT----VTRPAISEDGTI-YVTSLDGHLYAI  240 (330)
T ss_dssp             EEECSS-CCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCC----CSCCEECTTSCE-EEEETTTEEEEE
T ss_pred             EEecCC-CceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcc----eeceEECCCCeE-EEEcCCCeEEEE
Confidence            666543 566777787888765554   7899999 676666555443322    233677777765 445667778888


Q ss_pred             eCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       468 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      + .++..+..+......+.++.+.+++ .|..++.+|.|..||
T Consensus       241 ~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          241 N-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN  281 (330)
T ss_dssp             C-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred             C-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence            8 4566655554444334455665555 566777777777664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.48  E-value=1.7e-10  Score=103.76  Aligned_cols=250  Identities=7%  Similarity=-0.016  Sum_probs=158.2

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcce-----ecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCc
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLS-----STLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDK  311 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  311 (510)
                      .+|+.+.. +.|+.++++.....     ..+......+.+++|++++..|+.+. .++.|..+++..+.....+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34544443 47888888754321     11112234568999999777666665 5689999998766544334333356


Q ss_pred             eEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEecC---CCcEEEEECCCCceee
Q 010470          312 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHI---DGNLRLWDIQTGKLLS  387 (510)
Q Consensus       312 v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~  387 (510)
                      ..++++.+.++.++++....+.|.++++............ ..+..++++|++..|+.+..   .+.|..+++.. ....
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcE
Confidence            7899999844555666666789999998643322222222 45889999997665554443   46898888753 3333


Q ss_pred             eecccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEE
Q 010470          388 EVAAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI  466 (510)
Q Consensus       388 ~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i  466 (510)
                      .+..........++++|++..|+.+ ...+.|.++|+........+.....+     ..+++. ++.++++...++.|.+
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P-----~gi~~d-~~~lyva~~~~~~v~~  233 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP-----FAVTSY-GKNLYYTDWKTNSVIA  233 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE-----EEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCc-----eEEEEe-CCEEEEEECCCCeEEE
Confidence            3322222568999999987766554 45679999999765443333322222     224443 3444555556789999


Q ss_pred             EeCCCcceeecccccC-cCEEEEEEeCCCC
Q 010470          467 WSISKADIVRTLKEHT-APVLSCSWSGLGK  495 (510)
Q Consensus       467 wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~  495 (510)
                      +|..+++.+..+.... ....++++.|++-
T Consensus       234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          234 MDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EeCCCCCceEEEccccccccceeeecCccC
Confidence            9999998888876433 2467888888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.44  E-value=1.2e-10  Score=108.86  Aligned_cols=223  Identities=17%  Similarity=0.156  Sum_probs=152.7

Q ss_pred             cCCCEEE-EeeCCCeEEEEeCCCC----cceeccc-------ccccceeEEEEecCCCEEEEEeCC------CeEEEEEc
Q 010470          235 YNSARLI-SGGQDKSIKLWDTNTG----SLSSTLY-------GCLGSVLDLAITHDNRSVIAASSS------NNLYVWDV  296 (510)
Q Consensus       235 ~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~  296 (510)
                      +++++|+ +|..+++|.|+|+.+.    +...++.       ........+..+|+| .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            7787765 4666889999999755    4444442       112245667889999 77766555      78999999


Q ss_pred             CCCCeeEeecCCCC---ceEEEEEecCCCCEEEEEe-------------------CCCcEEEEECCCCeEeeeeeec---
Q 010470          297 NSGRVRHTLTGHTD---KVCAVDVSKISSRHVVSAA-------------------YDRTLKVWDLHKGYCVNTIIFH---  351 (510)
Q Consensus       297 ~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~---  351 (510)
                      .+++.+..+.....   .-..+.|+| +.+.+++..                   .+..|.+||+.+++.+.++...   
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            99999988863322   234577888 777777774                   3689999999999888888775   


Q ss_pred             CceeEEEE--cCCCCEEEEec------CCCcEEEEECCCCce--eeee--ccc---------------ccccEEEEEEcC
Q 010470          352 SNCNALAF--SMDGQTIFSGH------IDGNLRLWDIQTGKL--LSEV--AAH---------------SLAAVTSISLSR  404 (510)
Q Consensus       352 ~~i~~i~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~~--~~~---------------~~~~i~~i~~~~  404 (510)
                      .....+.|  +|+++++++++      .+++|.+|....+..  ...+  ...               ....+..|.++|
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            23555655  99999988776      456887766544321  1111  110               014578899999


Q ss_pred             CCCEEEEEec-CCcEEEEEcC---CceeeeEeecCCC----------eeecCceeEEEcCCCCEEEEEc
Q 010470          405 SGNIILTSGR-DNLHNLFDIR---SLEVCGSLRATGN----------RVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       405 ~~~~l~~~~~-d~~i~i~d~~---~~~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      ||++|+++.. .+.|.+||+.   +.+.+..+...+.          ........+.++|||++|+++.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999988876 5799999985   3455555544311          1111234489999999999888

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.43  E-value=7.5e-14  Score=131.83  Aligned_cols=202  Identities=15%  Similarity=0.175  Sum_probs=120.3

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc--ee
Q 010470          278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN--CN  355 (510)
Q Consensus       278 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~  355 (510)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+.. ++..+++++.||.|+.||..+|+.+..+..+..  +.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            578899999999999999999999988876  4454444444 566788888999999999998887666543311  11


Q ss_pred             -EEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec
Q 010470          356 -ALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA  434 (510)
Q Consensus       356 -~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  434 (510)
                       +..+. .+..+++|+.+|.|+.||..+|+.+..+..+.     ...++|++..+++++.++.|+.||..+++....+..
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence             11111 35567888889999999999999887776543     234567888999999999999999999887666543


Q ss_pred             CCCeeecCceeEEEcCCC---CEEEEEcCCCeEEEEeCCCcceeecccccCcCEEE-EEEeCCCC
Q 010470          435 TGNRVASNWSRSCISPDE---SYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS-CSWSGLGK  495 (510)
Q Consensus       435 ~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~  495 (510)
                      ..  .    ...+++++.   ..+++++.||.|+.||..+|+.+..+.. ..++.. ..++++|.
T Consensus       159 ~~--~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          159 FD--Y----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL  216 (369)
T ss_dssp             EE--E----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred             cc--c----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence            21  1    112334432   5577788899999999999998877663 344443 34555553

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.41  E-value=1.6e-11  Score=126.19  Aligned_cols=233  Identities=15%  Similarity=0.093  Sum_probs=148.0

Q ss_pred             cccceeEEEEecCCCEEEEEeC-----CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC--------
Q 010470          266 CLGSVLDLAITHDNRSVIAASS-----SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR--------  332 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg--------  332 (510)
                      +...+..++|||||++|+.+..     ...|++||+.+++.+.... +......++|+  +++.|+.++.+.        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL--GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE--TTTEEEEEESSCCC------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe--CCCEEEEEEecCcccccccc
Confidence            4557888999999998886432     2479999999998654311 11113567788  456666666553        


Q ss_pred             -----cEEEEECCCCeE--eeeeeec----CceeEEEEcCCCCEEEEec----CCCcEEEEECCCCc-eeeeeccccccc
Q 010470          333 -----TLKVWDLHKGYC--VNTIIFH----SNCNALAFSMDGQTIFSGH----IDGNLRLWDIQTGK-LLSEVAAHSLAA  396 (510)
Q Consensus       333 -----~i~iwd~~~~~~--~~~~~~~----~~i~~i~~~~~~~~l~~~~----~dg~i~i~d~~~~~-~~~~~~~~~~~~  396 (510)
                           .|++|++.++..  ...+...    .....+.|+|||++|+...    ....|+++|+.++. ....+..+. ..
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~-~~  282 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL-DA  282 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS-SS
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC-Cc
Confidence                 499999987643  2222222    2367899999999886433    23589999997764 344444443 33


Q ss_pred             EEEEEEcCCCCEEEEEe-cC---CcEEEEEcCCcee--eeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CC--eEEEE
Q 010470          397 VTSISLSRSGNIILTSG-RD---NLHNLFDIRSLEV--CGSLRATGNRVASNWSRSCISPDESYVAAGSA-DG--SVYIW  467 (510)
Q Consensus       397 i~~i~~~~~~~~l~~~~-~d---~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg--~i~iw  467 (510)
                      .... ++++|..|+..+ .+   +.|..+|+.++..  ...+..+....      +.|++++++|+.... +|  .|++|
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~------~~~s~~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV------LTVHSGSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC------EEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE------EEEEEECCEEEEEEEECCeeEEEEE
Confidence            4443 666666655544 33   5789999987643  23333333221      268899988877655 43  68999


Q ss_pred             eCCCcceeeccc-ccCcCEEEEEEeCCCCcEEEeeCC----CeEEEcC
Q 010470          468 SISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKN----GVVCVWT  510 (510)
Q Consensus       468 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd  510 (510)
                      ++..+. ...+. .+.+.+..+.++|++..|+....+    +.|+.||
T Consensus       356 d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          356 DYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             CTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             ECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            987544 33333 244567788888898877655444    6777765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.38  E-value=3.7e-11  Score=116.20  Aligned_cols=234  Identities=12%  Similarity=0.088  Sum_probs=169.0

Q ss_pred             cCCCEEEEeeC-CCeEEEEeCCCCcceecccc-cccceeEEEE-e-cCCCEEEEEe------------------CCCeEE
Q 010470          235 YNSARLISGGQ-DKSIKLWDTNTGSLSSTLYG-CLGSVLDLAI-T-HDNRSVIAAS------------------SSNNLY  292 (510)
Q Consensus       235 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~------------------~d~~i~  292 (510)
                      +||++++.... ++.|.+.|+.+.++...+.- ....+..+++ + |++.++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            38888776655 56799999999987774431 2345778888 5 9999999985                  346899


Q ss_pred             EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC--------------------------------------cE
Q 010470          293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR--------------------------------------TL  334 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg--------------------------------------~i  334 (510)
                      ++|..+.+....+.-.. ....++++| ++.++++.+.+.                                      .|
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            99999988888776333 446677888 677777766442                                      47


Q ss_pred             EEEECCC--CeE-eeeeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCCc------------eeeeecccccccEE
Q 010470          335 KVWDLHK--GYC-VNTIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGK------------LLSEVAAHSLAAVT  398 (510)
Q Consensus       335 ~iwd~~~--~~~-~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~------------~~~~~~~~~~~~i~  398 (510)
                      .+.|..+  +.. +..+.....+.++.++|||++++++ ..+.+|.++|+.+.+            ....+...  ....
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG--~gP~  334 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG--LGPL  334 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC--SCEE
T ss_pred             EEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC--CCcc
Confidence            8888887  555 6677777788999999999987765 467899999998653            23333332  6788


Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEcCC----------ceeeeEeecCCCee-ecCceeEEEcCCCCEEEEEcC---CCeE
Q 010470          399 SISLSRSGNIILTSGRDNLHNLFDIRS----------LEVCGSLRATGNRV-ASNWSRSCISPDESYVAAGSA---DGSV  464 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~---dg~i  464 (510)
                      .++|+|+|...++...|+.|.+||+.+          .+.+..+..+..+. ...-....++|||++|++.+.   |+ +
T Consensus       335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr-~  413 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR-F  413 (595)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS-S
T ss_pred             eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc-c
Confidence            999999995555667889999999987          56777777665532 111112346899999998754   33 3


Q ss_pred             -----------EEEeCCCcc
Q 010470          465 -----------YIWSISKAD  473 (510)
Q Consensus       465 -----------~iwd~~~~~  473 (510)
                                 .++|+..++
T Consensus       414 ~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          414 LNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CCCCSSCCEEEEEEECSSSS
T ss_pred             ccCCCCCCCcceEEEcCCCc
Confidence                       889986554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=1e-11  Score=116.14  Aligned_cols=228  Identities=14%  Similarity=0.051  Sum_probs=150.5

Q ss_pred             ccccceEEEEEecCCCEEEEeeC-----CCeEEEEeCCCCcceecccc------cccceeEEEEecCCCEEEEE-e---C
Q 010470          223 AHEGGCASILFEYNSARLISGGQ-----DKSIKLWDTNTGSLSSTLYG------CLGSVLDLAITHDNRSVIAA-S---S  287 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~-~---~  287 (510)
                      +|...+.+++|+++|+++++...     ++.|.+||+.+++.+..+..      +...+..+++++++..++.+ .   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            46678999999999876666543     57899999999886655432      23456899999876555444 4   5


Q ss_pred             CCeEEEEEcCCCCeeEeecCCCCceE-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEE
Q 010470          288 SNNLYVWDVNSGRVRHTLTGHTDKVC-AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTI  366 (510)
Q Consensus       288 d~~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l  366 (510)
                      ++.|.+||+.+++....+.+|..... ...+.+ ++..+.+.+.+|.+..|.             ..++.++|+|+|+.|
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~l  209 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWL  209 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeE-CCEEEEeccCCCceecee-------------cccceeEeccCCCEE
Confidence            78999999998887777765432111 123333 455666667777776653             236789999999988


Q ss_pred             EEecCCC-cEEEEECC---CCc-----eee--eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470          367 FSGHIDG-NLRLWDIQ---TGK-----LLS--EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRAT  435 (510)
Q Consensus       367 ~~~~~dg-~i~i~d~~---~~~-----~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  435 (510)
                      +++...+ .++.++..   .+.     ...  ...... +.+..++++++|.++++...++.|.+||..+++........
T Consensus       210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~-g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~  288 (343)
T 2qe8_A          210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEK-PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE  288 (343)
T ss_dssp             EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEEC-CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG
T ss_pred             EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccC-CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC
Confidence            8776655 56666532   111     000  011111 35667999999999999999999999998555543332211


Q ss_pred             CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                         .......++|+++|.++++.+..+.+.+|.
T Consensus       289 ---~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          289 ---KLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             ---GGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             ---ceecCCeeEECCCCcEEEEeCccccccccc
Confidence               122344588999998888877655554443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.37  E-value=8.6e-11  Score=119.57  Aligned_cols=268  Identities=13%  Similarity=0.157  Sum_probs=181.4

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccccc----------e-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS----------V-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  305 (510)
                      +..+++++.++.|.-+|..+|+.+..+......          + ..+++  .+..+++++.|+.|..+|..+|+.+..+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            557788888999999999999987665432210          0 12233  3567888999999999999999998877


Q ss_pred             cCCC----CceEE-EEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeec--C--------------------
Q 010470          306 TGHT----DKVCA-VDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFH--S--------------------  352 (510)
Q Consensus       306 ~~~~----~~v~~-i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~--~--------------------  352 (510)
                      ....    ..+.+ ..+   .+..++++..      +|.|..+|..+|+.+..+...  .                    
T Consensus       144 ~~~~~~~~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  220 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD  220 (668)
T ss_dssp             ECSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred             ccCCCCCcceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence            6421    11111 111   1334555543      589999999999998877531  0                    


Q ss_pred             ----------ceeEEEEcCCCCEEEEecCCC-------------------cEEEEECCCCceeeeecccc--------cc
Q 010470          353 ----------NCNALAFSMDGQTIFSGHIDG-------------------NLRLWDIQTGKLLSEVAAHS--------LA  395 (510)
Q Consensus       353 ----------~i~~i~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~--------~~  395 (510)
                                ....++++|++..+++++.++                   .|..+|..+|+.+..+...+        ..
T Consensus       221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~  300 (668)
T 1kv9_A          221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ  300 (668)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence                      012468888888888887766                   39999999999988876531        02


Q ss_pred             cEEEEEEcCCCC---EEEEEecCCcEEEEEcCCceeeeEeecCCC------------e--------------------ee
Q 010470          396 AVTSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN------------R--------------------VA  440 (510)
Q Consensus       396 ~i~~i~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------~--------------------~~  440 (510)
                      ++....+..+|+   .+++++.+|.++++|..+++.+........            +                    -.
T Consensus       301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~  380 (668)
T 1kv9_A          301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA  380 (668)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred             CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccc
Confidence            333333344665   688999999999999999988744332110            0                    00


Q ss_pred             cCceeEEEcCCCCEEEEE------------------------------------cCCCeEEEEeCCCcceeecccccCcC
Q 010470          441 SNWSRSCISPDESYVAAG------------------------------------SADGSVYIWSISKADIVRTLKEHTAP  484 (510)
Q Consensus       441 ~~~~~~~~s~~~~~l~~~------------------------------------~~dg~i~iwd~~~~~~~~~~~~~~~~  484 (510)
                      ..|..++++|+...+++.                                    ..+|.|..||+.+++.+.....+. +
T Consensus       381 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~  459 (668)
T 1kv9_A          381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-H  459 (668)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-S
T ss_pred             cCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-C
Confidence            123446788877766542                                    124889999999999887766432 3


Q ss_pred             EEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          485 VLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       485 v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +....+...+.++++++.||.|+.||
T Consensus       460 ~~~~~~~t~gg~vf~g~~dg~l~a~d  485 (668)
T 1kv9_A          460 WNGGTLSTAGNLVFQGTAAGQMHAYS  485 (668)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CcCceeEeCCCEEEEECCcccchhhh
Confidence            33344555677888899999999886

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.36  E-value=8.7e-10  Score=102.07  Aligned_cols=244  Identities=14%  Similarity=0.086  Sum_probs=154.6

Q ss_pred             cccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc--------------------ccccceeEEEEecCCCE
Q 010470          222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY--------------------GCLGSVLDLAITHDNRS  281 (510)
Q Consensus       222 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~  281 (510)
                      .+.-....+++|+++|++++++..++.|..|+..++.... +.                    .....+.++++.+++..
T Consensus        15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~   93 (322)
T 2fp8_A           15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ   93 (322)
T ss_dssp             ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred             CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence            3333456788999999888888889999999987654321 11                    11235788999984445


Q ss_pred             EEEEeCCCeEEEEEcCCCCeeEeec----C-CCCceEEEEEecCCCCEEEEEeC-----------------CCcEEEEEC
Q 010470          282 VIAASSSNNLYVWDVNSGRVRHTLT----G-HTDKVCAVDVSKISSRHVVSAAY-----------------DRTLKVWDL  339 (510)
Q Consensus       282 l~~~~~d~~i~iwd~~~~~~~~~~~----~-~~~~v~~i~~~~~~~~~l~s~~~-----------------dg~i~iwd~  339 (510)
                      |+++...+.|..+|..++.. ..+.    + .......+++.+.++++.++...                 ++.|..||.
T Consensus        94 l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           94 LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            66665556688888765532 2221    1 12346778887723455554322                 377999998


Q ss_pred             CCCeEeeeeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCCc--eeeeecccccccEEEEEEcCCCCEEEEEec--
Q 010470          340 HKGYCVNTIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGK--LLSEVAAHSLAAVTSISLSRSGNIILTSGR--  414 (510)
Q Consensus       340 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--  414 (510)
                      .++...........++.++++|+|+.|+++ +..+.|.+|++....  ....+.... + ...++++++|++.++...  
T Consensus       173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~-g-P~gi~~d~~G~l~va~~~~~  250 (322)
T 2fp8_A          173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP-N-PGNIKRNADGHFWVSSSEEL  250 (322)
T ss_dssp             TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS-S-EEEEEECTTSCEEEEEEEET
T ss_pred             CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC-C-CCCeEECCCCCEEEEecCcc
Confidence            877654433333557889999999866554 566899999987421  111222222 4 788999999997777654  


Q ss_pred             --------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          415 --------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       415 --------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                              .+.|..+|.. ++.+..+.............+++ .++.++++...++.|.++++..
T Consensus       251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             cccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                    4678888874 66666665443221122333444 4666666666778899998753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.33  E-value=5.5e-10  Score=111.23  Aligned_cols=268  Identities=11%  Similarity=0.092  Sum_probs=174.8

Q ss_pred             CCEEEEeeC-CCeEEEEeC-CCCcceeccccccc-c----------eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          237 SARLISGGQ-DKSIKLWDT-NTGSLSSTLYGCLG-S----------VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       237 ~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~-~----------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      +..+++++. ++.|.-+|. .+|+.+..+..... .          ...+++  .+..+++++.|+.|..+|..+|+.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            456667777 899999999 89988766542211 0          012233  35678888899999999999999887


Q ss_pred             eecCCC----CceEE-EEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecCce------------------
Q 010470          304 TLTGHT----DKVCA-VDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHSNC------------------  354 (510)
Q Consensus       304 ~~~~~~----~~v~~-i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~i------------------  354 (510)
                      .+....    ..+.+ ..+   .+..+++++.      +|.|..+|..+|+.+..+......                  
T Consensus       140 ~~~~~~~~~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~  216 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ  216 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred             EecCCCCCccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence            765321    01211 111   1345555554      789999999999988877543221                  


Q ss_pred             ---------------------eEEEEcCCCCEEEEecCC----------------CcEEEEECCCCceeeeecccc----
Q 010470          355 ---------------------NALAFSMDGQTIFSGHID----------------GNLRLWDIQTGKLLSEVAAHS----  393 (510)
Q Consensus       355 ---------------------~~i~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~----  393 (510)
                                           ..+++.+....++.++.+                +.|..+|..+|+.+..+....    
T Consensus       217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~  296 (571)
T 2ad6_A          217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW  296 (571)
T ss_dssp             SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence                                 235666766677766532                359999999999988776431    


Q ss_pred             ----cccEEEEEEcCCCC---EEEEEecCCcEEEEEcCCceeeeEeecCC-------------Cee--------------
Q 010470          394 ----LAAVTSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATG-------------NRV--------------  439 (510)
Q Consensus       394 ----~~~i~~i~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~~--------------  439 (510)
                          .....-+...++|+   .++.++.+|.++++|..+++.+..+....             .++              
T Consensus       297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~  376 (571)
T 2ad6_A          297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT  376 (571)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred             ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence                01122233334674   67788899999999999998877665332             111              


Q ss_pred             --------ecCceeEEEcCCCCEEEEEc-------------------------------------CCCeEEEEeCCCcce
Q 010470          440 --------ASNWSRSCISPDESYVAAGS-------------------------------------ADGSVYIWSISKADI  474 (510)
Q Consensus       440 --------~~~~~~~~~s~~~~~l~~~~-------------------------------------~dg~i~iwd~~~~~~  474 (510)
                              ...|..++++|+..++++.+                                     .+|.|..||+.+++.
T Consensus       377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~  456 (571)
T 2ad6_A          377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred             EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence                    01234567888877777653                                     357899999999998


Q ss_pred             eecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       475 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +..+... .++.+..+...+..++.++.||.|+.||
T Consensus       457 ~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          457 KWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             EEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             EEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEE
Confidence            8776532 2222333333456777788999998875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.32  E-value=4.6e-10  Score=114.20  Aligned_cols=256  Identities=13%  Similarity=0.133  Sum_probs=168.3

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccc----cceeE-EEEecCCCEEEEEeC------CCeEEEEEcCCCCeeEee
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCL----GSVLD-LAITHDNRSVIAASS------SNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~  305 (510)
                      +..+++++.|+.|..+|..+|+.+..+....    ..+.+ ..+. + ..+++++.      +|.|+.||..+|+.+..+
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            4578888899999999999999876654321    11111 1111 3 34555543      589999999999998877


Q ss_pred             cCCC-------------------------------CceEEEEEecCCCCEEEEEeCCC-------------------cEE
Q 010470          306 TGHT-------------------------------DKVCAVDVSKISSRHVVSAAYDR-------------------TLK  335 (510)
Q Consensus       306 ~~~~-------------------------------~~v~~i~~~~~~~~~l~s~~~dg-------------------~i~  335 (510)
                      ....                               .....+++.| ..+.++.++.++                   .|.
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            5210                               0112356777 567777777665                   499


Q ss_pred             EEECCCCeEeeeeeec----------CceeEEEEcCCCC---EEEEecCCCcEEEEECCCCceeeeecccc---------
Q 010470          336 VWDLHKGYCVNTIIFH----------SNCNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHS---------  393 (510)
Q Consensus       336 iwd~~~~~~~~~~~~~----------~~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------  393 (510)
                      .+|..+|+.+..+...          .++....+..+|+   .+++++.+|.++++|..+|+.+.......         
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~  353 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL  353 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred             EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence            9999999998887653          1222223334665   68899999999999999999874432211         


Q ss_pred             --cccE------------------------EEEEEcCCCCEEEEEe----------------------------------
Q 010470          394 --LAAV------------------------TSISLSRSGNIILTSG----------------------------------  413 (510)
Q Consensus       394 --~~~i------------------------~~i~~~~~~~~l~~~~----------------------------------  413 (510)
                        ..++                        ..++++|+..++++..                                  
T Consensus       354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~  433 (668)
T 1kv9_A          354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (668)
T ss_dssp             TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence              0011                        1267788777666421                                  


Q ss_pred             --cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCE-EEEEE
Q 010470          414 --RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV-LSCSW  490 (510)
Q Consensus       414 --~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~  490 (510)
                        .+|.|..||+.+++.............     ..+...+.++++++.||.|++||..+++.+..+....+.. .-+.+
T Consensus       434 ~~~~g~l~A~D~~tG~~~W~~~~~~~~~~-----~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~  508 (668)
T 1kv9_A          434 AVVSGALLAWDPVKQKAAWKVPYPTHWNG-----GTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF  508 (668)
T ss_dssp             GGCEEEEEEEETTTTEEEEEEEESSSCCC-----CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CCccceEEEEeCCCCcEEEEccCCCCCcC-----ceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE
Confidence              237899999999998877765433221     2345578889999999999999999999988876543211 12334


Q ss_pred             eCCCC-cEEEe
Q 010470          491 SGLGK-PLASA  500 (510)
Q Consensus       491 ~~~~~-~l~s~  500 (510)
                      ..+|+ +++.+
T Consensus       509 ~~~G~~yva~~  519 (668)
T 1kv9_A          509 ELAGRQYVAIM  519 (668)
T ss_dssp             EETTEEEEEEE
T ss_pred             EECCEEEEEEE
Confidence            45666 44444

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.32  E-value=3.5e-10  Score=99.44  Aligned_cols=200  Identities=8%  Similarity=0.033  Sum_probs=142.5

Q ss_pred             ceeEEEEecCCCEEEEEeC--CCeEEEEEcCCCCeeEeecCCCC-ceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          269 SVLDLAITHDNRSVIAASS--SNNLYVWDVNSGRVRHTLTGHTD-KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      ....+.|+|++..+++.+.  ++.|.++|+.+++.+..+.-... ....+++.  ++.+.++.-.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3578999998654444432  57999999999998888753222 22345554  3455556666899999999999999


Q ss_pred             eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc----ccEEEEEEcCCCCEEEEEecCCcEEEE
Q 010470          346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL----AAVTSISLSRSGNIILTSGRDNLHNLF  421 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~i~  421 (510)
                      .++... ......+++||..++++..++.|.++|..+.+.+..+.....    ..++.+.|. +|..++....++.|.+.
T Consensus       100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI  177 (266)
T ss_dssp             EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence            988765 222344556888777777788999999999988887764321    246778887 67555555567899999


Q ss_pred             EcCCceeeeEeecCCC---------eeecCceeEEEcCCCCE-EEEEcCCCeEEEEeCCCc
Q 010470          422 DIRSLEVCGSLRATGN---------RVASNWSRSCISPDESY-VAAGSADGSVYIWSISKA  472 (510)
Q Consensus       422 d~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~  472 (510)
                      |..+++.+..+.....         ........++++|+++. ++++...+.|++.++...
T Consensus       178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999888875311         01123356999999865 556667888999987654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.30  E-value=1.7e-09  Score=107.51  Aligned_cols=270  Identities=11%  Similarity=0.082  Sum_probs=175.9

Q ss_pred             CCEEEEeeC-CCeEEEEeC-CCCcceeccccccc-----------ceeEEEEecCCCE----EEEEeCCCeEEEEEcCCC
Q 010470          237 SARLISGGQ-DKSIKLWDT-NTGSLSSTLYGCLG-----------SVLDLAITHDNRS----VIAASSSNNLYVWDVNSG  299 (510)
Q Consensus       237 ~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~  299 (510)
                      +..+++++. ++.|.-+|. .+|+.+..+.....           ....++++|.+..    +++++.|+.|..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456777777 889999999 89988766543211           1123556554555    888999999999999999


Q ss_pred             CeeEeecCCCC----ceEE-EEEecCCCCEEEEEe------CCCcEEEEECCCCeEeeeeeecCce--------------
Q 010470          300 RVRHTLTGHTD----KVCA-VDVSKISSRHVVSAA------YDRTLKVWDLHKGYCVNTIIFHSNC--------------  354 (510)
Q Consensus       300 ~~~~~~~~~~~----~v~~-i~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~i--------------  354 (510)
                      +.+........    .+.+ ..+.  + ..+++++      .+|.|..+|..+|+.+..+......              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~--~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV--K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE--T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CEEEeecCCCCCccceeecCCEEE--C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            98877653220    1211 1111  3 3455554      3799999999999998877644321              


Q ss_pred             -------------------------eEEEEcCCCCEEEEecCC----------------CcEEEEECCCCceeeeecccc
Q 010470          355 -------------------------NALAFSMDGQTIFSGHID----------------GNLRLWDIQTGKLLSEVAAHS  393 (510)
Q Consensus       355 -------------------------~~i~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~  393 (510)
                                               ..+++.+....++.++.+                +.|..+|..+|+....+...+
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~  298 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence                                     135666777788877665                379999999999988776542


Q ss_pred             c--------ccEEEEEEc-CCC---CEEEEEecCCcEEEEEcCCceeeeEeecCC-------------Cee---------
Q 010470          394 L--------AAVTSISLS-RSG---NIILTSGRDNLHNLFDIRSLEVCGSLRATG-------------NRV---------  439 (510)
Q Consensus       394 ~--------~~i~~i~~~-~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~~---------  439 (510)
                      .        ....-+... .+|   ..++.++.+|.++++|..+++.+.......             .++         
T Consensus       299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  378 (599)
T 1w6s_A          299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM  378 (599)
T ss_dssp             TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred             CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence            1        111122332 567   567788899999999999998877654221             000         


Q ss_pred             -------------ecCceeEEEcCCCCEEEEEc---------------------------------------CCCeEEEE
Q 010470          440 -------------ASNWSRSCISPDESYVAAGS---------------------------------------ADGSVYIW  467 (510)
Q Consensus       440 -------------~~~~~~~~~s~~~~~l~~~~---------------------------------------~dg~i~iw  467 (510)
                                   ...|..++++|+..++++..                                       .+|.|..|
T Consensus       379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~  458 (599)
T 1w6s_A          379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY  458 (599)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred             CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence                         01244567787766665431                                       34789999


Q ss_pred             eCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       468 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |+.+++.+...... .++.+-.....+..++.++.||.|+.||
T Consensus       459 D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D  500 (599)
T 1w6s_A          459 NAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARD  500 (599)
T ss_dssp             CTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             ECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEE
Confidence            99999887766421 1222111223456777788899998875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.29  E-value=8.6e-10  Score=95.55  Aligned_cols=194  Identities=12%  Similarity=0.118  Sum_probs=138.1

Q ss_pred             eeEeecCCCCc--eEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE-ecCCCcE
Q 010470          301 VRHTLTGHTDK--VCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS-GHIDGNL  375 (510)
Q Consensus       301 ~~~~~~~~~~~--v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i  375 (510)
                      .+.++. |...  ...+.|+  ++.++.+.+.+|  .|+++|+.+++.+..+.....+....+.+++..|+. ...++.+
T Consensus        33 vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence            445553 4433  4778887  456777777766  899999999999999887766544444445555554 4468899


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC-eeecCceeEEEcCCCCE
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN-RVASNWSRSCISPDESY  454 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~  454 (510)
                      .+||..+.+.+.++.....+    ..+++++..|+.+..++.|.++|..+.+....+..... .....++.+.+. +|..
T Consensus       110 ~v~D~~t~~~~~ti~~~~eG----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l  184 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDGEG----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI  184 (262)
T ss_dssp             EEEETTTCCEEEEEECSSCC----CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEECccCcEEEEEECCCCc----eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence            99999999999988865312    33345778888777788999999999998888765432 121223335555 6766


Q ss_pred             EEEEcCCCeEEEEeCCCcceeeccccc------------CcCEEEEEEeCCCCcEEEeeC
Q 010470          455 VAAGSADGSVYIWSISKADIVRTLKEH------------TAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~s~~~  502 (510)
                      .+..-.++.|.+.|..+++.+..+...            ....++++|+|+++.|+..|.
T Consensus       185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            666656889999999999987776431            235699999999887766654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.29  E-value=1.2e-09  Score=95.98  Aligned_cols=202  Identities=9%  Similarity=0.047  Sum_probs=139.4

Q ss_pred             eeEeecCCCC--ceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCCcE
Q 010470          301 VRHTLTGHTD--KVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNL  375 (510)
Q Consensus       301 ~~~~~~~~~~--~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i  375 (510)
                      .+.++. |..  ....+.|++ ++.++++.+.  ++.|.++|+.+++.+..+..........+.+++..++ +...++.+
T Consensus        11 vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v   88 (266)
T 2iwa_A           11 VLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG   88 (266)
T ss_dssp             EEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE
T ss_pred             EEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE
Confidence            455554 443  357899988 4555555443  5799999999999999887655433333333455555 45568899


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC-eeecCceeEEEcCCCCE
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN-RVASNWSRSCISPDESY  454 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~  454 (510)
                      .++|..+.+.+..+.... ..  ...++++|..++++..++.|.++|..+.+....+..... ........+.+. +|..
T Consensus        89 ~viD~~t~~v~~~i~~g~-~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           89 FIYDRRTLSNIKNFTHQM-KD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             EEEETTTTEEEEEEECCS-SS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEECCCCcEEEEEECCC-CC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            999999999998886541 11  233566888887777889999999999988888764432 111123346666 6766


Q ss_pred             EEEEcCCCeEEEEeCCCcceeeccccc-------------CcCEEEEEEeCCCCc-EEEeeCCCeEEE
Q 010470          455 VAAGSADGSVYIWSISKADIVRTLKEH-------------TAPVLSCSWSGLGKP-LASADKNGVVCV  508 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~-l~s~~~dg~i~i  508 (510)
                      ++....++.|.+.|..+++.+..+...             ....++++|+|+++. ++++...+.|.+
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence            665656789999999999988877531             135689999999875 555656666654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.26  E-value=3.4e-08  Score=103.31  Aligned_cols=275  Identities=11%  Similarity=0.094  Sum_probs=175.1

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc-------cccceeEEEEecCCCEEEEEeCCCeEEEEEcC
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG-------CLGSVLDLAITHDNRSVIAASSSNNLYVWDVN  297 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  297 (510)
                      ...|.++...++|.+. .|+.++-+.+||..+++.......       ....|.++...++|.+.+ |+.+ -|.+||..
T Consensus       214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence            4568889888887644 455444488999877654322211       245799999998887555 4444 58899987


Q ss_pred             CCCeeEeecC-------CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-------ecCceeEEEEcCCC
Q 010470          298 SGRVRHTLTG-------HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-------FHSNCNALAFSMDG  363 (510)
Q Consensus       298 ~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~i~~i~~~~~~  363 (510)
                      ++........       ....|.++...+  ...+..|+.++.|..|+..++.......       ....|.++...++|
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~--~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g  368 (795)
T 4a2l_A          291 TDSFASYSSNPVENGSLSQRSVRSIFMDS--QGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK  368 (795)
T ss_dssp             TTEEEEECCCTTSTTSCSSSCEEEEEECT--TSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS
T ss_pred             CCeEEEEecCCCCCCCCCCCcEEEEEEeC--CcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC
Confidence            7654432211       235688888766  3457778878889999876543222111       12348889888887


Q ss_pred             CEEEEecCCCcEEEEECCCCceeeeecc-------cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470          364 QTIFSGHIDGNLRLWDIQTGKLLSEVAA-------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG  436 (510)
Q Consensus       364 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  436 (510)
                      . |.+|+.++-|..||..++........       -....|.++..+++|..|.+|+.++-+.+||..+++.........
T Consensus       369 ~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~  447 (795)
T 4a2l_A          369 N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS  447 (795)
T ss_dssp             C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred             C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence            7 45677777899999877654332211       112579999999988867777777789999998766433221111


Q ss_pred             CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc------ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          437 NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK------EHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       437 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ......+.++...++|.+.+... +| |.+||..+++......      .+...|.++...++|.+.+... +| |..|
T Consensus       448 ~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~  522 (795)
T 4a2l_A          448 QLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVF  522 (795)
T ss_dssp             CCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEE
T ss_pred             CcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEE
Confidence            11122345577778887655444 55 9999987765433221      1245789999998887555443 44 4444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.25  E-value=3.7e-09  Score=105.32  Aligned_cols=255  Identities=11%  Similarity=0.069  Sum_probs=164.8

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccc----cceeE-EEEecCCCEEEEEeC------CCeEEEEEcCCCCeeEee
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCL----GSVLD-LAITHDNRSVIAASS------SNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~  305 (510)
                      +..++.++.|+.|..+|..+|+.+.......    ..+.+ .... + ..+++++.      ++.|+.+|..+|+.+..+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            5578888889999999999998876543211    01211 1111 3 45666654      789999999999988876


Q ss_pred             cCCCCc-------------------------------------e-EEEEEecCCCCEEEEEeCC----------------
Q 010470          306 TGHTDK-------------------------------------V-CAVDVSKISSRHVVSAAYD----------------  331 (510)
Q Consensus       306 ~~~~~~-------------------------------------v-~~i~~~~~~~~~l~s~~~d----------------  331 (510)
                      ......                                     + ..+++.+ ....++.++.+                
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeE
Confidence            532111                                     0 1245555 44555555432                


Q ss_pred             CcEEEEECCCCeEeeeeeecC----------ceeEEEEcCCCC---EEEEecCCCcEEEEECCCCceeeeecccc-----
Q 010470          332 RTLKVWDLHKGYCVNTIIFHS----------NCNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHS-----  393 (510)
Q Consensus       332 g~i~iwd~~~~~~~~~~~~~~----------~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  393 (510)
                      +.|..+|..+|+.+..+....          .+.-+...++|+   .++.++.+|.++++|..+|+.+..+....     
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            369999999999988876431          112222234674   57788999999999999999887654321     


Q ss_pred             -------cccE--------------------------EEEEEcCCCCEEEEEe---------------------------
Q 010470          394 -------LAAV--------------------------TSISLSRSGNIILTSG---------------------------  413 (510)
Q Consensus       394 -------~~~i--------------------------~~i~~~~~~~~l~~~~---------------------------  413 (510)
                             ..++                          ..++++|+..++++.+                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                   0111                          2457888877777654                           


Q ss_pred             ----------cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCc
Q 010470          414 ----------RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA  483 (510)
Q Consensus       414 ----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  483 (510)
                                .+|.+..||+.+++....+........     ..+...+..+++++.||.|+.||..+++.+..+.....
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~-----~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  506 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG-----GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS-----BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc-----eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence                      247899999999988877764432221     12233466777799999999999999999888764321


Q ss_pred             C-EEEEEEeCCCCcEEE
Q 010470          484 P-VLSCSWSGLGKPLAS  499 (510)
Q Consensus       484 ~-v~~~~~~~~~~~l~s  499 (510)
                      . -.-+.+..+|+.++.
T Consensus       507 ~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          507 GIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             CCSCCEEEEETTEEEEE
T ss_pred             cEeeeEEEEECCEEEEE
Confidence            1 112345567774443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.25  E-value=3e-09  Score=92.15  Aligned_cols=187  Identities=11%  Similarity=0.084  Sum_probs=133.6

Q ss_pred             eeEEEEecCCCEEEEEeCCC--eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470          270 VLDLAITHDNRSVIAASSSN--NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       270 v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  347 (510)
                      ...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.... ......+.+.++.+.+..-.++.+.+||..+.+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4788898 666666666655  89999999999988886433 3333222232345555555689999999999999999


Q ss_pred             eeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc----cccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          348 IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS----LAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       348 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      +.....-..++  +++..|+.+..++.|.++|..+.+.+..+....    ...++.+.|. +|...+....++.|.+.|.
T Consensus       123 i~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp  199 (262)
T 3nol_A          123 FNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDP  199 (262)
T ss_dssp             EECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECT
T ss_pred             EECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEEC
Confidence            98765444455  567777777667889999999999888776532    1334567776 6766655557889999999


Q ss_pred             CCceeeeEeecCCC--------eeecCceeEEEcCCCCEEEEEcCC
Q 010470          424 RSLEVCGSLRATGN--------RVASNWSRSCISPDESYVAAGSAD  461 (510)
Q Consensus       424 ~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~d  461 (510)
                      .+++....+....-        ......+.++++|+++.|++.+..
T Consensus       200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            99999988876421        112245679999988777766643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.23  E-value=2.7e-08  Score=89.24  Aligned_cols=221  Identities=9%  Similarity=0.018  Sum_probs=140.3

Q ss_pred             cceEEEEEecCCCEEE-EeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeE
Q 010470          226 GGCASILFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~  303 (510)
                      ..+.+++|++++..|+ +...++.|.+++...+.....+.........++++|++..++.+. ..+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            4578999999765554 555578999999976544333323335678999999876666555 56799999986443322


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEE-EecCCCcEEEE
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIF-SGHIDGNLRLW  378 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~  378 (510)
                      ...........++++|.++.++++...  .+.|..+++.. .....+.  ....+..++++|++..|+ +....+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            222223567899999843444444433  46888888863 3222222  123588999999876655 55566889999


Q ss_pred             ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      |+........+.. . ..+..+++. .+.++++...++.|.++|..+++....+.....+   ....+++.|++.
T Consensus       195 ~~~g~~~~~~~~~-~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~---~p~gi~~~~~~~  263 (267)
T 1npe_A          195 NPAQPGRRKVLEG-L-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT---RLYGITIALSQC  263 (267)
T ss_dssp             ETTEEEEEEEEEC-C-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC---CCCCEEEECSCC
T ss_pred             ecCCCceEEEecC-C-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccccc---ccceeeecCccC
Confidence            9865443333322 1 445677765 3444455556689999999999888777543211   112267777654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.23  E-value=4.7e-08  Score=89.57  Aligned_cols=224  Identities=12%  Similarity=0.058  Sum_probs=141.9

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC--CcEEEEECCCCeEe
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLHKGYCV  345 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~  345 (510)
                      .....++|+++++++++...++.|..||... .....+. ....+.++++.+ +++++++....  ..|..+|..+++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            4567899999998666666889999999764 4433333 345688999998 66665555432  24777888777654


Q ss_pred             eeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCCce-eeee--------cccccccEEEEEEcCCCCEEEEE-e
Q 010470          346 NTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL-LSEV--------AAHSLAAVTSISLSRSGNIILTS-G  413 (510)
Q Consensus       346 ~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~--------~~~~~~~i~~i~~~~~~~~l~~~-~  413 (510)
                      ......  .....++..+++..+++...+|.|+++|...+.. +...        ..........+  +|++..|+++ .
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence            333222  2245566666665556665688999999876531 1100        00111345556  7888766555 4


Q ss_pred             cCCcEEEEEcCC-cee--eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce--eecccccCcCEEEE
Q 010470          414 RDNLHNLFDIRS-LEV--CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI--VRTLKEHTAPVLSC  488 (510)
Q Consensus       414 ~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~  488 (510)
                      ..+.|..|++.. +..  ...+...     .....++++++|+++++....+.|.+|+.. ++.  +..+......++++
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~  260 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV  260 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred             CCCEEEEEEeCCCCCCCccEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence            567999999874 321  1111111     122348899999988877778899999965 655  32344334568999


Q ss_pred             EEe---CCCCcEEEeeC
Q 010470          489 SWS---GLGKPLASADK  502 (510)
Q Consensus       489 ~~~---~~~~~l~s~~~  502 (510)
                      +|.   |++..|+.++.
T Consensus       261 a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          261 AFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EECCSTTTTTEEEEEEC
T ss_pred             EEecccCCCCEEEEECC
Confidence            998   88777766554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.20  E-value=5.7e-09  Score=103.80  Aligned_cols=258  Identities=11%  Similarity=0.058  Sum_probs=164.6

Q ss_pred             EEEecCCCE----EEEeeCCCeEEEEeCCCCcceecccccc----cceeE-EEEecCCCEEEEEe------CCCeEEEEE
Q 010470          231 ILFEYNSAR----LISGGQDKSIKLWDTNTGSLSSTLYGCL----GSVLD-LAITHDNRSVIAAS------SSNNLYVWD  295 (510)
Q Consensus       231 ~~~s~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~------~d~~i~iwd  295 (510)
                      ++++|.+..    ++.++.|+.|..+|..+|+.+.......    ..+.+ ..+. ++ .+++++      .+|.|+.+|
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D  188 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD  188 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence            455444444    8888889999999999999876543221    01211 1121 44 455555      379999999


Q ss_pred             cCCCCeeEeecCCCCc-------------------------------------e-EEEEEecCCCCEEEEEeCC------
Q 010470          296 VNSGRVRHTLTGHTDK-------------------------------------V-CAVDVSKISSRHVVSAAYD------  331 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~-------------------------------------v-~~i~~~~~~~~~l~s~~~d------  331 (510)
                      ..+|+.+..+......                                     + ..+++.+ ....++.+..+      
T Consensus       189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~  267 (599)
T 1w6s_A          189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNE  267 (599)
T ss_dssp             TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCG
T ss_pred             CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccC
Confidence            9999988776532211                                     0 1234555 45566666544      


Q ss_pred             ----------CcEEEEECCCCeEeeeeeecCc----------eeEEEEc-CCC---CEEEEecCCCcEEEEECCCCceee
Q 010470          332 ----------RTLKVWDLHKGYCVNTIIFHSN----------CNALAFS-MDG---QTIFSGHIDGNLRLWDIQTGKLLS  387 (510)
Q Consensus       332 ----------g~i~iwd~~~~~~~~~~~~~~~----------i~~i~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~  387 (510)
                                +.|..+|..+|+.+..+.....          +.-+... .+|   ..++.++.+|.++++|..+|+.+.
T Consensus       268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence                      4899999999999887765321          1122222 467   467778999999999999999887


Q ss_pred             eecccc------------cccE--------------------------EEEEEcCCCCEEEEEe----------------
Q 010470          388 EVAAHS------------LAAV--------------------------TSISLSRSGNIILTSG----------------  413 (510)
Q Consensus       388 ~~~~~~------------~~~i--------------------------~~i~~~~~~~~l~~~~----------------  413 (510)
                      ......            ..++                          ..++++|+..++++..                
T Consensus       348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~  427 (599)
T 1w6s_A          348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA  427 (599)
T ss_dssp             EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred             cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence            654221            0111                          2456777766655431                


Q ss_pred             -----------------------cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          414 -----------------------RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       414 -----------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                                             ..|.+.-||+.+++.+...........     -.+...+.+++.++.||.|+.||..
T Consensus       428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~-----g~~~tagg~vf~gt~dg~l~A~D~~  502 (599)
T 1w6s_A          428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWG-----GTMATAGDLVFYGTLDGYLKARDSD  502 (599)
T ss_dssp             TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCS-----BCEEETTTEEEEECTTSEEEEEETT
T ss_pred             CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccC-----cceEecCCEEEEECCCCeEEEEECC
Confidence                                   346788899999888777654321111     1123357778889999999999999


Q ss_pred             CcceeecccccCcCE-EEEEEeCCCCc
Q 010470          471 KADIVRTLKEHTAPV-LSCSWSGLGKP  496 (510)
Q Consensus       471 ~~~~~~~~~~~~~~v-~~~~~~~~~~~  496 (510)
                      +|+.+..++...+.+ .-+.|..+|+.
T Consensus       503 tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          503 TGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             TCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            999998876433211 22455667774

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.20  E-value=1.3e-08  Score=94.22  Aligned_cols=230  Identities=10%  Similarity=0.027  Sum_probs=147.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec-C------------------CCCceEEEEEecCCCCEEEEEe
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT-G------------------HTDKVCAVDVSKISSRHVVSAA  329 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~------------------~~~~v~~i~~~~~~~~~l~s~~  329 (510)
                      ...+++|++++++++++..++.|..|+..++....... .                  ....+.++++.+ ....|+.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEEE
Confidence            45678999999888888889999999987655332110 0                  113578899886 334555555


Q ss_pred             CCCcEEEEECCCCeEeeeeee------cCceeEEEEcC-CCCEEEEecC-----------------CCcEEEEECCCCce
Q 010470          330 YDRTLKVWDLHKGYCVNTIIF------HSNCNALAFSM-DGQTIFSGHI-----------------DGNLRLWDIQTGKL  385 (510)
Q Consensus       330 ~dg~i~iwd~~~~~~~~~~~~------~~~i~~i~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~~  385 (510)
                      ..+.|..+|..++.. ..+..      ...++.+++.+ +|++.++...                 +|.|..||..+++.
T Consensus        99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            556688999875542 22211      12478899999 9987776432                 36799999876654


Q ss_pred             eeeecccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCce--eeeEeecCCCeeecCceeEEEcCCCCEEEEEcC--
Q 010470          386 LSEVAAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLE--VCGSLRATGNRVASNWSRSCISPDESYVAAGSA--  460 (510)
Q Consensus       386 ~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--  460 (510)
                      .......  .....++++|+|+.|+++ +..+.|.+|++....  ....+.....     ...++++++|++.++...  
T Consensus       178 ~~~~~~~--~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-----P~gi~~d~~G~l~va~~~~~  250 (322)
T 2fp8_A          178 TLLLKEL--HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-----PGNIKRNADGHFWVSSSEEL  250 (322)
T ss_dssp             EEEEEEE--SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-----EEEEEECTTSCEEEEEEEET
T ss_pred             EEeccCC--ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-----CCCeEECCCCCEEEEecCcc
Confidence            3322221  456679999999866655 556899999987421  1111111111     334889999987776554  


Q ss_pred             --------CCeEEEEeCCCcceeeccccc----CcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          461 --------DGSVYIWSISKADIVRTLKEH----TAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       461 --------dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                              .+.|..+|. .++.+..+...    ...++++++ .++.++++...++.|..+
T Consensus       251 ~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL  309 (322)
T ss_dssp             TSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred             cccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence                    467888986 47666655433    234667776 356656665567777765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.20  E-value=1.1e-08  Score=101.98  Aligned_cols=256  Identities=15%  Similarity=0.138  Sum_probs=163.2

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceeccccccc----cee-EEEEecC---CC-EEEEEeC------CCeEEEEEcCCCCe
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLG----SVL-DLAITHD---NR-SVIAASS------SNNLYVWDVNSGRV  301 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~-~~~~~~~---~~-~l~~~~~------d~~i~iwd~~~~~~  301 (510)
                      +..++.++.|+.|.-+|..+|+.+........    .+. ...+..+   ++ .+++++.      ++.|+.+|..+|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45788888999999999999998765442210    111 1112212   33 5666543      78999999999998


Q ss_pred             eEeecCCCCce-----------------------------------------EEEEEecCCCCEEEEEeC----------
Q 010470          302 RHTLTGHTDKV-----------------------------------------CAVDVSKISSRHVVSAAY----------  330 (510)
Q Consensus       302 ~~~~~~~~~~v-----------------------------------------~~i~~~~~~~~~l~s~~~----------  330 (510)
                      +.........+                                         ..+++.| ....++.+..          
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGG
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCccc
Confidence            87654311000                                         1234555 4456665542          


Q ss_pred             ----------C----CcEEEEECCCCeEeeeeeecC----------ceeEEEEc-CCCC---EEEEecCCCcEEEEECCC
Q 010470          331 ----------D----RTLKVWDLHKGYCVNTIIFHS----------NCNALAFS-MDGQ---TIFSGHIDGNLRLWDIQT  382 (510)
Q Consensus       331 ----------d----g~i~iwd~~~~~~~~~~~~~~----------~i~~i~~~-~~~~---~l~~~~~dg~i~i~d~~~  382 (510)
                                |    +.|..+|..+|+.+..+....          .+.-+... .+|+   .++.++.+|.++++|..+
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                      2    689999999999988875421          11112221 4674   778899999999999999


Q ss_pred             Cceeeeeccccc------------ccE--------------------------------EEEEEcCCCCEEEEEe-----
Q 010470          383 GKLLSEVAAHSL------------AAV--------------------------------TSISLSRSGNIILTSG-----  413 (510)
Q Consensus       383 ~~~~~~~~~~~~------------~~i--------------------------------~~i~~~~~~~~l~~~~-----  413 (510)
                      |+.+..+.....            .++                                ..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            998876543310            000                                1346677655555533     


Q ss_pred             ----------------------------cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470          414 ----------------------------RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY  465 (510)
Q Consensus       414 ----------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  465 (510)
                                                  .+|.|.-||+.+++..............     .+...+.++++|+.||.++
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-----~~~tagglvf~g~~dg~l~  510 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAG-----VLATAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSC-----CEEETTTEEEEECTTSEEE
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCccc-----ceEeCCCEEEEECCCCcEE
Confidence                                        2578999999999988776644322211     1223467788899999999


Q ss_pred             EEeCCCcceeecccccCcCE-EEEEEeCCCCcEE
Q 010470          466 IWSISKADIVRTLKEHTAPV-LSCSWSGLGKPLA  498 (510)
Q Consensus       466 iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~  498 (510)
                      .||..+|+.+..++...+.+ .-+.|..+|+..+
T Consensus       511 A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            99999999998886543221 1256667887433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.20  E-value=4.3e-09  Score=91.15  Aligned_cols=182  Identities=10%  Similarity=0.043  Sum_probs=132.0

Q ss_pred             eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEE--EEEecCCCCEEEEEeCCCcEEEEECCCCeEeee
Q 010470          270 VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCA--VDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT  347 (510)
Q Consensus       270 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~--i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  347 (510)
                      ...+.|+ ++.++++.+.+|.|+++|+.+++.+..+  -......  +++.  ++.+.+..-.++.+.+||..+.+.+.+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            4678887 4566666677889999999999988877  2233333  4443  456666666789999999999999999


Q ss_pred             eeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc----ccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          348 IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL----AAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       348 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      +........++  +++..|+.+..++.|.++|..+.+.+..+.....    ..++.+.|. +|..++....++.|.+.|.
T Consensus       132 i~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          132 TRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             EECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred             EeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence            98765555555  5688888777789999999999998887765321    245667776 6765555556889999999


Q ss_pred             CCceeeeEeecCC---------CeeecCceeEEEcCCCCEEEEEc
Q 010470          424 RSLEVCGSLRATG---------NRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       424 ~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      .+++.+..+....         .......+.++++|+++.|++.+
T Consensus       209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999998887541         11122456799999766555444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.20  E-value=5.6e-09  Score=90.41  Aligned_cols=189  Identities=13%  Similarity=0.142  Sum_probs=134.0

Q ss_pred             ceeecccccc--ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEE
Q 010470          217 CKHKINAHEG--GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYV  293 (510)
Q Consensus       217 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i  293 (510)
                      .+.++ .|..  ....+.|+ ++.++++.+.+|.|+++|+.+++.+..+  -..........++++.|+... .++.+.+
T Consensus        45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred             EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEE
Confidence            44444 4443  35788887 4567778888899999999999998877  233333333334455555554 6889999


Q ss_pred             EEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC------ceeEEEEcCCCCEEE
Q 010470          294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS------NCNALAFSMDGQTIF  367 (510)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~i~~i~~~~~~~~l~  367 (510)
                      ||..+.+.+.++..... -+.++  + ++..|+.+..++.|.++|..+.+.+..+....      .++.+.|. +|..++
T Consensus       121 ~D~~Tl~~~~ti~~~~e-GwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya  195 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGE-GWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA  195 (268)
T ss_dssp             EETTTTEEEEEEECSSC-CCCEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EECCcCcEEEEEeCCCc-eeEEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence            99999999988875332 24444  3 45566666668999999999999888876542      35677776 776665


Q ss_pred             EecCCCcEEEEECCCCceeeeeccc------------ccccEEEEEEcCCCCEEEEEec
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAH------------SLAAVTSISLSRSGNIILTSGR  414 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~i~~i~~~~~~~~l~~~~~  414 (510)
                      ....+..|.+.|..+++.+..+...            .....+.|+++|+++.|++.+.
T Consensus       196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            5656789999999999988877643            1136789999998776666554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.19  E-value=1.8e-07  Score=97.75  Aligned_cols=269  Identities=11%  Similarity=0.102  Sum_probs=172.9

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc------ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY------GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      ...|.++..+++|. |..|+.++-|..|+..++.......      -....|.++...++|. |.+|+.++-|..|+..+
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT  386 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence            35699999998885 5667777778899876544321111      1245689999988887 55577777799999877


Q ss_pred             CCeeEeecC--------CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-----ecCceeEEEEcCCCCE
Q 010470          299 GRVRHTLTG--------HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-----FHSNCNALAFSMDGQT  365 (510)
Q Consensus       299 ~~~~~~~~~--------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~i~~i~~~~~~~~  365 (510)
                      +........        ....|.++...+ ++..|..|+.++.|..||..+++......     ....|.++...++|.+
T Consensus       387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l  465 (795)
T 4a2l_A          387 QRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL  465 (795)
T ss_dssp             CCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred             CcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE
Confidence            765433211        235788888876 55547778877889999998776443321     1245888988888875


Q ss_pred             EEEecCCCcEEEEECCCCceeeeecc-----cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec---CCC
Q 010470          366 IFSGHIDGNLRLWDIQTGKLLSEVAA-----HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA---TGN  437 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~  437 (510)
                      .+. +. +.+.+||..+++.......     .....|.++..+++|.+.+.+.  +.+..||..+...  .+..   ...
T Consensus       466 wig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~  539 (795)
T 4a2l_A          466 WLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSN  539 (795)
T ss_dssp             EEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCG
T ss_pred             EEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCC
Confidence            554 44 4589999877654332211     1125789999999988766554  5588899877655  2221   111


Q ss_pred             eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec--ccc-cCcCEEEEEEeCCCCcEEEeeCCCe
Q 010470          438 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT--LKE-HTAPVLSCSWSGLGKPLASADKNGV  505 (510)
Q Consensus       438 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~s~~~dg~  505 (510)
                      .....+.++..+++|.+.++.. .| |..||..+++....  ..+ ....|.++...++|.+.+++ ..|.
T Consensus       540 l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl  607 (795)
T 4a2l_A          540 VTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NRGI  607 (795)
T ss_dssp             GGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TTEE
T ss_pred             CCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CCce
Confidence            1222455677788888665444 45 88999776644321  112 24568889998888755544 4443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.18  E-value=1.3e-08  Score=87.55  Aligned_cols=194  Identities=10%  Similarity=0.027  Sum_probs=136.1

Q ss_pred             eeEeecCCC--CceEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCCcE
Q 010470          301 VRHTLTGHT--DKVCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNL  375 (510)
Q Consensus       301 ~~~~~~~~~--~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i  375 (510)
                      .+.++. |.  .....+.|++  +.++.+.+.+|  .|+.+|+.+++.+..+.....+....+.+.+..|+ ....++.+
T Consensus        11 v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           11 VVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence            444553 54  3466888875  56666666654  89999999999999988776654444444455555 45578899


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeee-cCceeEEEcCCCCE
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA-SNWSRSCISPDESY  454 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~  454 (510)
                      .+||..+.+.+.++.... . -..++  +++..|+++..++.|.++|..+.+....+........ ...+.+.+. +|..
T Consensus        88 ~v~D~~tl~~~~ti~~~~-~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l  162 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPG-E-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL  162 (243)
T ss_dssp             EEEETTTTEEEEEEECSS-C-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEECCcCcEEEEEeCCC-C-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence            999999999999988754 2 23343  5677777777789999999999998888765432221 222334443 6766


Q ss_pred             EEEEcCCCeEEEEeCCCcceeeccccc-------------CcCEEEEEEeCCCCcEEEeeC
Q 010470          455 VAAGSADGSVYIWSISKADIVRTLKEH-------------TAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~s~~~  502 (510)
                      ++....+..|.+.|..+++.+..+...             ....++++|+|+++.|+..|.
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            666656789999999999987766421             235689999998886666554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.18  E-value=8.3e-08  Score=89.44  Aligned_cols=246  Identities=9%  Similarity=0.021  Sum_probs=154.2

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeE
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~  303 (510)
                      ....+|.+..+++ +|+.+. ...|+..++........+. ....+..++|++.+..|+.+. ..+.|..+++..+....
T Consensus        33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  109 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  109 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence            3445677766644 444333 3458888887554433333 344578999998777666665 67889999988665444


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEE-EecCC-CcEEEEEC
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIF-SGHID-GNLRLWDI  380 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~-~~~~d-g~i~i~d~  380 (510)
                      .+........++++.+.+++++++-...+.|.++++........+.. ...+..++++|.+..|+ +.... +.|..+++
T Consensus       110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence            44433345678888875666667767778999999875432222222 24589999999655544 54455 78999997


Q ss_pred             CCCceeeeecccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          381 QTGKLLSEVAAHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       381 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      .. .....+..........++++|++..|+.+ ...+.|..+|+........+....    .....+++ ..+.++++..
T Consensus       190 dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~----~~P~giav-~~~~ly~td~  263 (349)
T 3v64_C          190 DG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL----PHPFAITV-FEDSLYWTDW  263 (349)
T ss_dssp             TS-CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC----SSEEEEEE-ETTEEEEEET
T ss_pred             CC-CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCC----CCceEEEE-ECCEEEEecC
Confidence            54 33333333333578999999876655554 456789999987543322222211    11223666 4566666777


Q ss_pred             CCCeEEEEeCCCcceeeccc
Q 010470          460 ADGSVYIWSISKADIVRTLK  479 (510)
Q Consensus       460 ~dg~i~iwd~~~~~~~~~~~  479 (510)
                      ..+.|..++..+|+....+.
T Consensus       264 ~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          264 HTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTTEEEEEETTTCCSCEEEE
T ss_pred             CCCeEEEEEccCCCccEEec
Confidence            78889999866666554443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.17  E-value=1.3e-08  Score=101.33  Aligned_cols=271  Identities=15%  Similarity=0.144  Sum_probs=170.5

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccccc---------eeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGS---------VLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG  307 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  307 (510)
                      +..+++++.++.|.-+|..+|+.+..+......         ...+++  .+..+++++.++.|..+|..+|+.+..+..
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            345666666445999999999887665433211         012223  356788889999999999999998877653


Q ss_pred             CCC----ceE-EEEEecC--CCC-EEEEEe------CCCcEEEEECCCCeEeeeeeecCc--------------------
Q 010470          308 HTD----KVC-AVDVSKI--SSR-HVVSAA------YDRTLKVWDLHKGYCVNTIIFHSN--------------------  353 (510)
Q Consensus       308 ~~~----~v~-~i~~~~~--~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~--------------------  353 (510)
                      ...    .+. ...+...  ++. .+++++      .+|.|..+|..+|+.+........                    
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~  225 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence            321    111 1111111  122 566654      378999999999998876543210                    


Q ss_pred             ----------------------eeEEEEcCCCCEEEEecC--------------------C----CcEEEEECCCCceee
Q 010470          354 ----------------------CNALAFSMDGQTIFSGHI--------------------D----GNLRLWDIQTGKLLS  387 (510)
Q Consensus       354 ----------------------i~~i~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~~  387 (510)
                                            -..++++|....+++++.                    |    +.|..+|..+|+...
T Consensus       226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W  305 (582)
T 1flg_A          226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence                                  023566677777776553                    2    589999999999998


Q ss_pred             eeccccc--------ccEEEEEEc-CCCC---EEEEEecCCcEEEEEcCCceeeeEeecCCC-------------ee---
Q 010470          388 EVAAHSL--------AAVTSISLS-RSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN-------------RV---  439 (510)
Q Consensus       388 ~~~~~~~--------~~i~~i~~~-~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------------~~---  439 (510)
                      .+...+.        ....-+... .+|+   .++.++.+|.++++|..+++.+..+.....             ++   
T Consensus       306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~  385 (582)
T 1flg_A          306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE  385 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred             EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence            8754210        111112222 4674   788899999999999999988766554320             00   


Q ss_pred             -------------------------ecCceeEEEcCCCCEEEEEc---------------------------------CC
Q 010470          440 -------------------------ASNWSRSCISPDESYVAAGS---------------------------------AD  461 (510)
Q Consensus       440 -------------------------~~~~~~~~~s~~~~~l~~~~---------------------------------~d  461 (510)
                                               ...|..++++|+...+++..                                 .+
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~  465 (582)
T 1flg_A          386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV  465 (582)
T ss_dssp             TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred             ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence                                     00133467777666555432                                 25


Q ss_pred             CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          462 GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       462 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |.|..||+.+++.+.....+. ++.+-.....+..++.++.||.++.||
T Consensus       466 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             ceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEE
Confidence            889999999999887765332 222212222456777889999998875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.16  E-value=4.2e-09  Score=107.41  Aligned_cols=271  Identities=10%  Similarity=0.071  Sum_probs=156.7

Q ss_pred             EEEEec-CCCEEEEeeCCC-----------eEEEEeCCCCcceec--cc-ccccceeEEEEecCCCEEEEEe-CCCeEEE
Q 010470          230 SILFEY-NSARLISGGQDK-----------SIKLWDTNTGSLSST--LY-GCLGSVLDLAITHDNRSVIAAS-SSNNLYV  293 (510)
Q Consensus       230 ~~~~s~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i  293 (510)
                      ++++.+ +|+.++.|+.++           .+.+||..+++....  +. .+.....++++.+++..+++|+ .++.+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556777 888888887543           588999987764221  21 2233344577888999999988 4568999


Q ss_pred             EEcCCCCeeEeecCCCCc-eEEEEEecCCCCEEEEEe-CC-----CcEEEEECCCCeEeeee-----eecCceeEEEEcC
Q 010470          294 WDVNSGRVRHTLTGHTDK-VCAVDVSKISSRHVVSAA-YD-----RTLKVWDLHKGYCVNTI-----IFHSNCNALAFSM  361 (510)
Q Consensus       294 wd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~-----~~~~~i~~i~~~~  361 (510)
                      ||..+++....-..+... -.++.+.+ ++.+++.|+ .+     ..+.+||..++.....-     .....-....+..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             ecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            999876543322212111 23344555 678888888 34     57999999887644321     0000000112224


Q ss_pred             CCCEEEEecCCC---------cEEEEECCCCceeeeecccc--------cccEEEEEEcC-CCCEEEEEecCC-------
Q 010470          362 DGQTIFSGHIDG---------NLRLWDIQTGKLLSEVAAHS--------LAAVTSISLSR-SGNIILTSGRDN-------  416 (510)
Q Consensus       362 ~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~--------~~~i~~i~~~~-~~~~l~~~~~d~-------  416 (510)
                      ++..++.|+.+|         .+..||..+...........        ...-.++.|.. +++++++|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            555555555444         46788887665333222111        01234444543 677888887532       


Q ss_pred             ----cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----------CeEEEEeCCCcce--eeccc
Q 010470          417 ----LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----------GSVYIWSISKADI--VRTLK  479 (510)
Q Consensus       417 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~--~~~~~  479 (510)
                          .+.+||..+..-.... ....+........++.|+|++++.|+.+           ..+.+||..+++-  +..+.
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~  507 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS  507 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred             CcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC
Confidence                5778887765543322 0111111112335677899999999854           4689999876542  22222


Q ss_pred             ccCcCEEEEEEeCCCCcEEEeeC
Q 010470          480 EHTAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       480 ~~~~~v~~~~~~~~~~~l~s~~~  502 (510)
                      ..........+.|+|+.++.||.
T Consensus       508 ~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          508 IVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SCCCTTEEEEECTTSCEEEEECC
T ss_pred             CccccccHhhcCCCcEEEecCCC
Confidence            22222334566799999998884

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.15  E-value=2.4e-08  Score=85.80  Aligned_cols=187  Identities=10%  Similarity=0.036  Sum_probs=132.3

Q ss_pred             cceeEEEEecCCCEEEEEeCC--CeEEEEEcCCCCeeEeecCCCCce-EEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470          268 GSVLDLAITHDNRSVIAASSS--NNLYVWDVNSGRVRHTLTGHTDKV-CAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC  344 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  344 (510)
                      .....+.|++ +.++.+.+.+  +.|+.+|+.+++.+..+....... -.+++.  ++.+.+..-.++.+.+||..+.+.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence            3456889986 5555555554  489999999999988876433321 234443  455566666789999999999999


Q ss_pred             eeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc----ccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470          345 VNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL----AAVTSISLSRSGNIILTSGRDNLHNL  420 (510)
Q Consensus       345 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~i  420 (510)
                      +.++........++  +++..|+++..++.|.++|..+.+.+..+.....    ..++.+.+. +|..++....++.|.+
T Consensus        98 ~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v  174 (243)
T 3mbr_X           98 RARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR  174 (243)
T ss_dssp             EEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence            99998776555555  4677777766788999999999988887765321    245566665 6665555556889999


Q ss_pred             EEcCCceeeeEeecCCC---------eeecCceeEEEcCCCCEEEEEcC
Q 010470          421 FDIRSLEVCGSLRATGN---------RVASNWSRSCISPDESYVAAGSA  460 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~~~~l~~~~~  460 (510)
                      .|..+++.+..+....-         ......+.++++|+++.|++.+.
T Consensus       175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            99999999988874421         12234567999998776665554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.15  E-value=5.1e-08  Score=89.35  Aligned_cols=235  Identities=10%  Similarity=0.027  Sum_probs=144.2

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC--eEE
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN--NLY  292 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~  292 (510)
                      .+....+..+ ....+++|+++|.++++...++.|..||.... ....+ .....+..++++++|+++++....+  .|.
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~   98 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVV   98 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence            3344445433 46789999999997777778899999998754 32222 2235688999999999666554432  477


Q ss_pred             EEEcCCCCeeEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-eeeee----------ecCceeEEEEc
Q 010470          293 VWDVNSGRVRHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC-VNTII----------FHSNCNALAFS  360 (510)
Q Consensus       293 iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~----------~~~~i~~i~~~  360 (510)
                      .++..+++....... .......++..+ ++..+++...++.|.++|..++.. +....          .-...+.+  +
T Consensus        99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A           99 SLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             EEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence            777777775433221 122334455444 444455544688999999876532 11100          01234555  7


Q ss_pred             CCCCEEE-EecCCCcEEEEECCC-Cce--eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee--Eeec
Q 010470          361 MDGQTIF-SGHIDGNLRLWDIQT-GKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG--SLRA  434 (510)
Q Consensus       361 ~~~~~l~-~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~  434 (510)
                      |++..|+ +....+.|..||+.. +..  ...+...  .....++++++|+++++....+.|.+||.. ++...  .+..
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~  252 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ  252 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence            8887665 455678899999864 321  1111111  346678999999988887778899999975 44422  2221


Q ss_pred             CCCeeecCceeEEEc---CCCCEEEEEcCCC
Q 010470          435 TGNRVASNWSRSCIS---PDESYVAAGSADG  462 (510)
Q Consensus       435 ~~~~~~~~~~~~~~s---~~~~~l~~~~~dg  462 (510)
                      .    .....+++|.   |+++.|++.+..+
T Consensus       253 ~----~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          253 G----VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             T----CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             c----cCCceEEEEecccCCCCEEEEECCCC
Confidence            1    1223458888   8877777665443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.11  E-value=1.5e-07  Score=89.07  Aligned_cols=255  Identities=8%  Similarity=0.015  Sum_probs=157.2

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEee
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTL  305 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~  305 (510)
                      .-+|.+..+.+ +|+.+. ...|+.+++........+. ....+..++|++.+..|+.+. ..+.|+.+++..+.....+
T Consensus        78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred             CCeECCccccc-eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence            34555555533 444433 3568888887655433333 345678999998766666555 6789999998866544444


Q ss_pred             cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEE-EecCC-CcEEEEECCC
Q 010470          306 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIF-SGHID-GNLRLWDIQT  382 (510)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~-~~~~d-g~i~i~d~~~  382 (510)
                      .........+++.+..+.++++-...+.|.++++........+... ..+..++++|.+..|+ +.... +.|..+++..
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            4333455778888755666667667788999998654332222222 4589999998666555 44444 7899999754


Q ss_pred             CceeeeecccccccEEEEEEcCCCCEEEE-EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC
Q 010470          383 GKLLSEVAAHSLAAVTSISLSRSGNIILT-SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD  461 (510)
Q Consensus       383 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  461 (510)
                      . ....+..........|+|+|++..|+. -...+.|..+|+........+....    .....+++ ..+.++++....
T Consensus       235 ~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~----~~P~giav-~~~~ly~td~~~  308 (386)
T 3v65_B          235 S-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL----PHPFAITV-FEDSLYWTDWHT  308 (386)
T ss_dssp             C-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSC----SSEEEEEE-ETTEEEEEETTT
T ss_pred             C-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCC----CCceEEEE-ECCEEEEeeCCC
Confidence            3 333333232356899999987665554 4556789999987543322222211    11223666 455666777778


Q ss_pred             CeEEEEeCCCcceeecccccCcCEEEEEE
Q 010470          462 GSVYIWSISKADIVRTLKEHTAPVLSCSW  490 (510)
Q Consensus       462 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~  490 (510)
                      +.|..++..+++....+......+.++++
T Consensus       309 ~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          309 KSINSANKFTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             TEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             CeEEEEECCCCcceEEEccCCCCCceEEE
Confidence            89999997677665555433333344443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=6.3e-07  Score=93.51  Aligned_cols=277  Identities=11%  Similarity=0.033  Sum_probs=170.4

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc--------------cccccceeEEEEecCCCEEEEEeCCCe
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL--------------YGCLGSVLDLAITHDNRSVIAASSSNN  290 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~d~~  290 (510)
                      ...|.++...++|. |..|+..+-|.++|..++......              ......|.++...++|. |.+|+.++-
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            35688998888775 555666456888998766532211              12345789999998887 556676677


Q ss_pred             EEEEEcCCCCeeEeec---------CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee----eecCceeEE
Q 010470          291 LYVWDVNSGRVRHTLT---------GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI----IFHSNCNAL  357 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~i~~i  357 (510)
                      |..|+..++.......         .....|.++...+ + ..|..|+.++.|..||..++......    .....|.++
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i  412 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-Q-GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS  412 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-T-SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-C-CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence            8889877655332211         1235688887765 3 45667776778999998755433211    112458888


Q ss_pred             EEcCCCCEEEEecCCCcEEEEECCCCceeeeec-ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC
Q 010470          358 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA-AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG  436 (510)
Q Consensus       358 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  436 (510)
                      ...++|.+ .+|+.++-|..||..+++...... ......|.++...++|.+.+. +. +.+..||..++..........
T Consensus       413 ~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~  489 (781)
T 3v9f_A          413 LKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSN  489 (781)
T ss_dssp             EECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTT
T ss_pred             EECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcc
Confidence            88877765 456666679999987765433221 112267999999888775554 44 568889988765433322211


Q ss_pred             -CeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          437 -NRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       437 -~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                       ......+.++...++|.+.+....+| |..||..+++......   .....|.++...++|.+.++. .+|.|..||
T Consensus       490 ~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d  565 (781)
T 3v9f_A          490 SQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS  565 (781)
T ss_dssp             SSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred             cccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence             11123345577888887665444355 8889877654332111   124578999998888755444 466646654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=9.5e-08  Score=91.68  Aligned_cols=237  Identities=9%  Similarity=0.061  Sum_probs=145.6

Q ss_pred             ceeEEEEec-CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC-CC----cEEEEECCCC
Q 010470          269 SVLDLAITH-DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-DR----TLKVWDLHKG  342 (510)
Q Consensus       269 ~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg----~i~iwd~~~~  342 (510)
                      ....++++| ++..|+++...+.|+.+|+.++...... ........++|++ +++.|+.+.. ++    .+.+++.. +
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~-g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRE-S  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCC-C
Confidence            457899998 4666777766588999998766544333 3556688999998 6775555443 22    34444433 3


Q ss_pred             eEe--eeeeecCceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEE-EEEecCCcE
Q 010470          343 YCV--NTIIFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII-LTSGRDNLH  418 (510)
Q Consensus       343 ~~~--~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i  418 (510)
                      ...  ..+.....+..++++| +|.++++...++.|..|+...+................++|+|+|++| ++....+.|
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            222  2333345578899999 788777777888999999876654333332222467899999999955 445567889


Q ss_pred             EEEEcCC--cee--eeEeecC-C-----C------eeecCceeEEEc--------CCCCEEEEEcCCCeEEEEeCCCcce
Q 010470          419 NLFDIRS--LEV--CGSLRAT-G-----N------RVASNWSRSCIS--------PDESYVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       419 ~i~d~~~--~~~--~~~~~~~-~-----~------~~~~~~~~~~~s--------~~~~~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      ..++...  +..  ...+.+. .     .      ....+...+++.        ++|.++++-..++.|+.++ .++..
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v  373 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV  373 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence            9987653  221  1222211 0     0      011111134453        4577777777788999998 44543


Q ss_pred             eeccc-------c----------cCcCEEEEEEeCC-CCcEEEeeCCCeEEEc
Q 010470          475 VRTLK-------E----------HTAPVLSCSWSGL-GKPLASADKNGVVCVW  509 (510)
Q Consensus       475 ~~~~~-------~----------~~~~v~~~~~~~~-~~~l~s~~~dg~i~iw  509 (510)
                      .....       +          .-....+++++|+ +.++++-..++.|+.+
T Consensus       374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            32221       1          0125789999995 6555565566777754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.04  E-value=1.8e-06  Score=79.22  Aligned_cols=227  Identities=9%  Similarity=0.026  Sum_probs=140.7

Q ss_pred             CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCC----CCeeEeecCCCCceEEEEEecCC
Q 010470          247 KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNS----GRVRHTLTGHTDKVCAVDVSKIS  321 (510)
Q Consensus       247 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~  321 (510)
                      ..|+..|+.+......+. ....+..++|++.+..|+.+. .++.|..+++..    ......+........++++.+.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            468888988766544333 345678999998776666655 568999999875    22222233233456788888745


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCCCEEEEec-CC-CcEEEEECCCCceeeeecccccccEE
Q 010470          322 SRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGH-ID-GNLRLWDIQTGKLLSEVAAHSLAAVT  398 (510)
Q Consensus       322 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~i~  398 (510)
                      ++++++-...+.|.++|+........+. ....+..++++|.+..|+... .. +.|..+++. |.....+.........
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~  167 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN  167 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCce
Confidence            6666666778899999987543332222 224589999999666555443 33 789999874 4444433322336789


Q ss_pred             EEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470          399 SISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT  477 (510)
Q Consensus       399 ~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  477 (510)
                      .++++|++..|+.+ ...+.|..+|+..... ..+....... .....+++. .+.++++....+.|..++..+++.+..
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~-~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRL-AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL  244 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTT-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCcc-CCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence            99999877666555 4567899999875332 2222111001 112236664 466666677788999999766654443


Q ss_pred             c
Q 010470          478 L  478 (510)
Q Consensus       478 ~  478 (510)
                      +
T Consensus       245 i  245 (316)
T 1ijq_A          245 L  245 (316)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=2.6e-07  Score=88.61  Aligned_cols=240  Identities=13%  Similarity=0.109  Sum_probs=147.7

Q ss_pred             ceEEEEEec-CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC-C----eEEEEEcCCCC
Q 010470          227 GCASILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS-N----NLYVWDVNSGR  300 (510)
Q Consensus       227 ~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~----~i~iwd~~~~~  300 (510)
                      ....++++| ++..|+.+...+.|+.+|+.++.... +.........++|++++++|+++... +    .+.+++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            567899998 45566666555889999998765433 33345567899999999977766642 1    3444443 333


Q ss_pred             ee--EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcCCCCE-EEEecCCCcE
Q 010470          301 VR--HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQT-IFSGHIDGNL  375 (510)
Q Consensus       301 ~~--~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~~~~~-l~~~~~dg~i  375 (510)
                      ..  ..+. ......+++++|.++.++++-..++.|..|+...+.........  ..+..++|+|+|++ +++....+.|
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            22  2222 12345678888856666666667889999999876643333222  34789999999995 4555677889


Q ss_pred             EEEECCC--Cce--eeeeccc--------------ccccEE-EEEEc--------CCCCEEEEEecCCcEEEEEcCCcee
Q 010470          376 RLWDIQT--GKL--LSEVAAH--------------SLAAVT-SISLS--------RSGNIILTSGRDNLHNLFDIRSLEV  428 (510)
Q Consensus       376 ~i~d~~~--~~~--~~~~~~~--------------~~~~i~-~i~~~--------~~~~~l~~~~~d~~i~i~d~~~~~~  428 (510)
                      ..++...  +..  +..+...              ...... .+.+.        ++|.++++-..++.|+.++. ++..
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v  373 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRV  373 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcE
Confidence            9987643  221  1111110              012244 56653        45677777777889999984 4543


Q ss_pred             eeEeecC----CC---e------eecCceeEEEcC-CCCEEEEEcCCCeEEEEeCC
Q 010470          429 CGSLRAT----GN---R------VASNWSRSCISP-DESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       429 ~~~~~~~----~~---~------~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~  470 (510)
                      .......    ..   .      .......++++| +|.++++-..++.|+.+++.
T Consensus       374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            3322110    00   0      012345688998 57777777777888888753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.01  E-value=4.1e-07  Score=87.19  Aligned_cols=240  Identities=12%  Similarity=0.113  Sum_probs=147.6

Q ss_pred             cceEEEEEecC--CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC-----eEEEEEcCC
Q 010470          226 GGCASILFEYN--SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN-----NLYVWDVNS  298 (510)
Q Consensus       226 ~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~  298 (510)
                      ....+++|+|+  +..|+.+...+.|+.+|..++..... .........++|+++|+ |+++...+     .+..++...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            45679999984  44455544448999999987766443 33455688999999999 55554321     233333322


Q ss_pred             CCe-eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-ec--CceeEEEEcCCCCEE-EEecCCC
Q 010470          299 GRV-RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FH--SNCNALAFSMDGQTI-FSGHIDG  373 (510)
Q Consensus       299 ~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~--~~i~~i~~~~~~~~l-~~~~~dg  373 (510)
                      +.. ...+. .......+++.|.++.++++-..++.|..+|..++.....+. ..  .....++|+|+|+.| ++....+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            211 01121 223456678888556666666667899999998776533332 21  223569999999954 4556678


Q ss_pred             cEEEEECC--CCce--eeeeccc--------------ccccEEEEEE---------cCCCCEEEEEecCCcEEEEEcCCc
Q 010470          374 NLRLWDIQ--TGKL--LSEVAAH--------------SLAAVTSISL---------SRSGNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       374 ~i~i~d~~--~~~~--~~~~~~~--------------~~~~i~~i~~---------~~~~~~l~~~~~d~~i~i~d~~~~  426 (510)
                      .|+.++..  ++..  ...+...              .......+++         .++|.++++-..++.|+.++. ++
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            89998865  2321  1111111              1134778999         778888888888889999985 44


Q ss_pred             eeeeEeecCCC--------e------eecCceeEEEc-CCCCEEEEEcCCCeEEEEeCC
Q 010470          427 EVCGSLRATGN--------R------VASNWSRSCIS-PDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       427 ~~~~~~~~~~~--------~------~~~~~~~~~~s-~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      ... .+.+...        .      .......++++ ++|.++++-..++.|+.++++
T Consensus       375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            433 3322211        0      11224458888 677777777778888887753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=9.7e-07  Score=92.08  Aligned_cols=273  Identities=10%  Similarity=0.022  Sum_probs=169.2

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc---------cccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL---------YGCLGSVLDLAITHDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  294 (510)
                      ....|.++..+++|. |..|+.++-|..|+..++......         ......|.++...++|. |.+|+.++-|..|
T Consensus       311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~  388 (781)
T 3v9f_A          311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVF  388 (781)
T ss_dssp             SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEE
T ss_pred             CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEE
Confidence            345799999998885 666776777889988765432211         11245689999888877 4556656668889


Q ss_pred             EcCCCCeeEee---cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee---ecCceeEEEEcCCCCEEEE
Q 010470          295 DVNSGRVRHTL---TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII---FHSNCNALAFSMDGQTIFS  368 (510)
Q Consensus       295 d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~  368 (510)
                      +..++......   ......|.++...+ + ..|..|+.++.+..+|..+++......   ....|.++...++|.+ ..
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wi  465 (781)
T 3v9f_A          389 ENGKRVAIYNKENRELLSNSVLCSLKDS-E-GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WI  465 (781)
T ss_dssp             ETTEEEEECC-----CCCSBEEEEEECT-T-SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EE
T ss_pred             ECCCCeEEEccCCCCCCCcceEEEEECC-C-CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EE
Confidence            87654332211   12346788887765 3 456667777789999988776443321   1245888888877764 44


Q ss_pred             ecCCCcEEEEECCCCceeeeeccc----ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470          369 GHIDGNLRLWDIQTGKLLSEVAAH----SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS  444 (510)
Q Consensus       369 ~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  444 (510)
                      |+. +-|..||..+++........    ....|.++..+++|.+.+.+ .++-+..||..+..... +..........+.
T Consensus       466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~  542 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVRK-FNQYEGFCSNTIN  542 (781)
T ss_dssp             EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEEE-ECTTTTCSCSCEE
T ss_pred             EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEEE-ccCCCCCCCCeeE
Confidence            555 56999998776543332211    12578999999988866554 43447778887655432 3222222223455


Q ss_pred             eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec--ccc-cCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          445 RSCISPDESYVAAGSADGSVYIWSISKADIVRT--LKE-HTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       445 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                      ++..+++|.+.++.. +|-|..||..+++...-  -.+ ....|.++...++|.+.++ +.+|..
T Consensus       543 ~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~Gl~  605 (781)
T 3v9f_A          543 QIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTGIS  605 (781)
T ss_dssp             EEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSCEE
T ss_pred             EEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCceE
Confidence            677788888655544 77558898776643221  111 2345778888888865444 455543

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=98.96  E-value=2.2e-08  Score=75.77  Aligned_cols=83  Identities=22%  Similarity=0.248  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010470           90 ESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNE  169 (510)
Q Consensus        90 ~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (510)
                      ...|..++.++.+++.++.++..++++..+.++.+++|+..++.++..++.++..++++|..+++|||..++++++.+|.
T Consensus        67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~  146 (152)
T 3a7p_A           67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNS  146 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34777899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHH
Q 010470          170 ANA  172 (510)
Q Consensus       170 ~~~  172 (510)
                      ++.
T Consensus       147 an~  149 (152)
T 3a7p_A          147 EID  149 (152)
T ss_dssp             ---
T ss_pred             hcc
Confidence            874

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.96  E-value=9.4e-06  Score=74.82  Aligned_cols=272  Identities=8%  Similarity=0.008  Sum_probs=148.8

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc----ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY----GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      ..+.+|.|.+++..+++ +..|.| +...+.|+.-....    .....+.++.|.+ +. +++++..+.|+. ..+.|+.
T Consensus        36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~t  110 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQS  110 (327)
T ss_dssp             SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSS
T ss_pred             CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCC
Confidence            46899999877777774 556765 33344443212111    1244688899986 44 444555665544 3333443


Q ss_pred             eEeec---CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEEEecCCCcEE
Q 010470          302 RHTLT---GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIFSGHIDGNLR  376 (510)
Q Consensus       302 ~~~~~---~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~  376 (510)
                      -....   .+...+..+.+.+ ++..++++ .+|.|..- ...|..-....  ....+..+.+.|++.+++++.. |.++
T Consensus       111 W~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~  186 (327)
T 2xbg_A          111 WSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFY  186 (327)
T ss_dssp             CEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEE
T ss_pred             ceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEE
Confidence            22222   2335577777765 45555444 46654332 22232222222  2235788999999888877754 4554


Q ss_pred             EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEE
Q 010470          377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVA  456 (510)
Q Consensus       377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  456 (510)
                      .-+-..+..-..+.......+..+.+.+++.++++ +.+|.+.+.+...+.....+..........+..+.+.+++.+++
T Consensus       187 ~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (327)
T 2xbg_A          187 STWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWL  265 (327)
T ss_dssp             EEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEE
T ss_pred             EEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEE
Confidence            43211133222222222367889999998876644 45777776643333333222211001111244577888888777


Q ss_pred             EEcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          457 AGSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       457 ~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++. +|.| ++..+.|+.-..+.   .....+.++.|.+++ .+++++.+|.|.-++
T Consensus       266 ~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          266 AGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             EES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             EeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence            665 6766 44555554443333   223567888887554 466777888887653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.94  E-value=6.6e-07  Score=78.14  Aligned_cols=203  Identities=8%  Similarity=0.112  Sum_probs=134.2

Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  381 (510)
                      .+.+-...+..++++|.++.++++...++.|...|+. ++.+..+...  ...-.+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4556667899999999555566667889999999997 8888887554  568899999999877777677899999876


Q ss_pred             CCce---eeeec-----ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC---ceeeeEeec---CCCeeecCceeEE
Q 010470          382 TGKL---LSEVA-----AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS---LEVCGSLRA---TGNRVASNWSRSC  447 (510)
Q Consensus       382 ~~~~---~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~---~~~~~~~~~~~~~  447 (510)
                      ....   +....     .........++|+|.++.|+++.......+|.+..   ...+..+..   .........+.++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432   22221     12235578999999998777777665555555531   111111111   0011123456688


Q ss_pred             EcCC-CCEEEEEcCCCeEEEEeCCCcceeeccccc---------CcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          448 ISPD-ESYVAAGSADGSVYIWSISKADIVRTLKEH---------TAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       448 ~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ++|. +.+++....+..+.++|.. ++++..+.-.         -...-+|+|.++|+..++ +..+.+++|
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            9885 5566666677889999965 5555443221         125689999999985555 555666655

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.94  E-value=5.8e-07  Score=86.16  Aligned_cols=238  Identities=8%  Similarity=0.032  Sum_probs=145.6

Q ss_pred             ceeEEEEecC--CCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC---C-cEEEEECCCC
Q 010470          269 SVLDLAITHD--NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD---R-TLKVWDLHKG  342 (510)
Q Consensus       269 ~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d---g-~i~iwd~~~~  342 (510)
                      ....++|+|+  +..|+++...+.|+.+|+.++...... .......++++.+ +++++++....   . .+..++...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence            4578999984  455666655589999998777655443 3456688999999 66654444321   1 2333333222


Q ss_pred             eE-eeeeeecCceeEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeee-cccccccEEEEEEcCCCCEEEE-EecCCcE
Q 010470          343 YC-VNTIIFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQTGKLLSEV-AAHSLAAVTSISLSRSGNIILT-SGRDNLH  418 (510)
Q Consensus       343 ~~-~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i  418 (510)
                      .. ...+.....+..++++| +|.++++...++.|+.+|..++.....+ ..........++|+|+|++|+. ....+.|
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            11 11222334578899999 7777777777889999998877652322 2222133457999999995554 4556889


Q ss_pred             EEEEcC--Ccee--eeEeecC-CC----------eeecCceeEEE---------cCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470          419 NLFDIR--SLEV--CGSLRAT-GN----------RVASNWSRSCI---------SPDESYVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       419 ~i~d~~--~~~~--~~~~~~~-~~----------~~~~~~~~~~~---------s~~~~~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      ..++..  ++..  ...+.+. ..          ........+++         .++|.++++-..++.|+.++. +|..
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v  376 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV  376 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence            998865  2221  1122111 00          00112344788         788888888888899999984 4543


Q ss_pred             eecccc-----------------cCcCEEEEEEe-CCCCcEEEeeCCCeEEEc
Q 010470          475 VRTLKE-----------------HTAPVLSCSWS-GLGKPLASADKNGVVCVW  509 (510)
Q Consensus       475 ~~~~~~-----------------~~~~v~~~~~~-~~~~~l~s~~~dg~i~iw  509 (510)
                      ......                 .-....+|+++ ++|.++++-..++.|+.+
T Consensus       377 ~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  429 (433)
T 4hw6_A          377 TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI  429 (433)
T ss_dssp             EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            221110                 11247899999 667666666667777764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.94  E-value=7.1e-06  Score=77.83  Aligned_cols=245  Identities=9%  Similarity=0.002  Sum_probs=152.3

Q ss_pred             EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCC----CeeEeecCCCCceE
Q 010470          239 RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSG----RVRHTLTGHTDKVC  313 (510)
Q Consensus       239 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~v~  313 (510)
                      +|+.+. ...|+..++........+ .....+..++|++.+..|+.+. ..+.|+.+++...    .....+........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444443 468899998866543333 3456788999998777666665 5678999988652    23333333445678


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCCCEEEEec-C-CCcEEEEECCCCceeeeec
Q 010470          314 AVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGH-I-DGNLRLWDIQTGKLLSEVA  390 (510)
Q Consensus       314 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~  390 (510)
                      .+++.+..++++++-...+.|.+.++........+. ....+..++++|.+..|+... . .+.|...++... ....+.
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~  241 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV  241 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEE
Confidence            899987566677777778899999997554433333 224589999999666555443 2 478999998543 333333


Q ss_pred             ccccccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          391 AHSLAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       391 ~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      ......+..|++++++..|+.+ ...+.|..+|+............. ... ....+++ ..+.++++....+.|..+|.
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~-~l~-~P~gl~v-~~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-RLA-HPFSLAV-FEDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS-TTS-SEEEEEE-ETTEEEEEESSSCSEEEEES
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC-CCC-CCEEEEE-eCCEEEEecCCCCeEEEEEc
Confidence            2223678999999877766655 456789999987543332222211 111 1122555 34455666667788999997


Q ss_pred             CCcceeecccccCcCEEEEE
Q 010470          470 SKADIVRTLKEHTAPVLSCS  489 (510)
Q Consensus       470 ~~~~~~~~~~~~~~~v~~~~  489 (510)
                      .+|+.+..+......+.++.
T Consensus       319 ~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          319 LTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             SSCCCCEEEECSCSCEEEEE
T ss_pred             CCCCceEEEecCCCCCceEE
Confidence            77766655543333344443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.94  E-value=1.4e-06  Score=79.75  Aligned_cols=227  Identities=7%  Similarity=0.030  Sum_probs=139.6

Q ss_pred             CCeEEEEeCCCCcc-eecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCe-eEeecCCCCceEEEEEecCCC
Q 010470          246 DKSIKLWDTNTGSL-SSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKISS  322 (510)
Q Consensus       246 dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~  322 (510)
                      ...|+.+++..... ...+......+..++|++.+..|+.+. ..+.|..+++..+.. ...+........++++.+.++
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            45788999876541 112222234567899998766665554 678899999876532 122222234566788887566


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEec--CCCcEEEEECCCCceeeeecccccccEEE
Q 010470          323 RHVVSAAYDRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVTS  399 (510)
Q Consensus       323 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~  399 (510)
                      +++++-...+.|.++++........+ .....+..++++|.+..|+...  ..+.|..+++. |.....+..........
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Png  170 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNG  170 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccE
Confidence            66677667789999998654322222 2224589999998665555444  35789999875 43333332222357899


Q ss_pred             EEEcCCCCEEEE-EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470          400 ISLSRSGNIILT-SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       400 i~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  478 (510)
                      ++++|++..|+. -+..+.|..+|+..............    ....+++. .+.++++-...+.|..++..+++....+
T Consensus       171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~----~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP----HPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS----CEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC----CceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            999997665555 45567899999875332222221111    12235564 3455666667788999998777654443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.92  E-value=2.2e-06  Score=74.86  Aligned_cols=201  Identities=14%  Similarity=0.161  Sum_probs=132.1

Q ss_pred             eeccccccceEEEEEecCCCEEE-EeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          219 HKINAHEGGCASILFEYNSARLI-SGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      +.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.+..+. +.....-.+++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            34556667899999999876554 57778899999998 87777663 22356788999999987777667889999988


Q ss_pred             CCCCe---eEeec------CCCCceEEEEEecCCCCEEEEEeCCC--cEEEEEC-CCCeEeeeee--------ecCceeE
Q 010470          297 NSGRV---RHTLT------GHTDKVCAVDVSKISSRHVVSAAYDR--TLKVWDL-HKGYCVNTII--------FHSNCNA  356 (510)
Q Consensus       297 ~~~~~---~~~~~------~~~~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~-~~~~~~~~~~--------~~~~i~~  356 (510)
                      .....   .....      ..+....+++|.| .++.|+++....  .|..|+- ..+..+..+.        .-..+.+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~  177 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG  177 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence            75442   22221      1344568999999 454555454443  4555541 0111111111        1135789


Q ss_pred             EEEcCC-CCEEEEecCCCcEEEEECCCCceeeeecccc--------cccEEEEEEcCCCCEEEEEecCCcEEEEEc
Q 010470          357 LAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--------LAAVTSISLSRSGNIILTSGRDNLHNLFDI  423 (510)
Q Consensus       357 i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~  423 (510)
                      ++++|. +.+++....+..+.++|. .++.+..+....        ......|+|+++|++.++ +..+.+++|..
T Consensus       178 l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          178 AEFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            999994 556666777888999996 466665554332        136789999999985555 66677776654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.90  E-value=1.3e-06  Score=83.77  Aligned_cols=247  Identities=13%  Similarity=0.093  Sum_probs=152.2

Q ss_pred             ceEEEEEec-CCCEE-EEeeCCCeEEEEeCCCCcceecccc---cccceeEEEE-------ecCCCEEEEEeCCC-----
Q 010470          227 GCASILFEY-NSARL-ISGGQDKSIKLWDTNTGSLSSTLYG---CLGSVLDLAI-------THDNRSVIAASSSN-----  289 (510)
Q Consensus       227 ~v~~~~~s~-~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~~~~~d~-----  289 (510)
                      ....|+|+| ++..| ++....+.|++.|+.++........   .......++|       ++++..|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 34444 4444457799999987766443322   2235789999       99999777776543     


Q ss_pred             --eEEEEEcCC-CCee-----EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC-------CCeE----------
Q 010470          290 --NLYVWDVNS-GRVR-----HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-------KGYC----------  344 (510)
Q Consensus       290 --~i~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~----------  344 (510)
                        .|.+++... +...     ..+... .....++++|.++.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              366665333 2221     222211 2345678888666667777778899999987       4543          


Q ss_pred             -eee-eee--cCceeEEEEcCCCCE-EEEecCCCcEEEEEC--CCCce--eeeeccc--------------ccccEE-EE
Q 010470          345 -VNT-IIF--HSNCNALAFSMDGQT-IFSGHIDGNLRLWDI--QTGKL--LSEVAAH--------------SLAAVT-SI  400 (510)
Q Consensus       345 -~~~-~~~--~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~--~~~~~--~~~~~~~--------------~~~~i~-~i  400 (510)
                       ... +..  ......++|+|+|++ +++-+..+.|+.++.  ..+..  ...+...              ....+. .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             112 222  234689999999995 555567788998664  33321  1122111              012345 55


Q ss_pred             EEc-------CCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC--------------e------eecCceeEEEcCC-C
Q 010470          401 SLS-------RSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN--------------R------VASNWSRSCISPD-E  452 (510)
Q Consensus       401 ~~~-------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------------~------~~~~~~~~~~s~~-~  452 (510)
                      ...       ++|.++++-..++.|+.++. ++. +.++.+...              .      .......++++++ |
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            665       56777888888899999994 453 344433211              1      1123456888986 8


Q ss_pred             CEEEEEcCCCeEEEEeCCCcceee
Q 010470          453 SYVAAGSADGSVYIWSISKADIVR  476 (510)
Q Consensus       453 ~~l~~~~~dg~i~iwd~~~~~~~~  476 (510)
                      .++++-+.+..|+.+++.....+.
T Consensus       457 ~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          457 MFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EEEEEETTTTEEEEEEECCCC---
T ss_pred             EEEEEeCCCCEEEEEECCCCcccc
Confidence            888888888899999887655443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.85  E-value=5.4e-06  Score=77.12  Aligned_cols=205  Identities=11%  Similarity=0.039  Sum_probs=132.7

Q ss_pred             cceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeE
Q 010470          226 GGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~  303 (510)
                      ..+.+++|++.+..| ++-...+.|..+++..+.....+.........+++.+.+..|+.+ ...+.|.++++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            347899999765555 555567889999988665433333333456789999866655554 467899999987544333


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCC-CcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEE-EecCCCcEEEEE
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYD-RTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIF-SGHIDGNLRLWD  379 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d  379 (510)
                      .+.........+++.|.++.++++-... +.|..+++.... ...+.  .-..++.++++|++..|+ +-...+.|..+|
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            3434446678999998555555555555 789999986432 22222  123488999998666555 555677899999


Q ss_pred             CCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  433 (510)
                      +.... ...+.......+..+++ ..+.++++....+.|..++..+++....+.
T Consensus       232 ~dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          232 LDGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCc-eEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            86433 33332222356788888 455666666677888888866665554443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.84  E-value=3.4e-06  Score=80.90  Aligned_cols=238  Identities=10%  Similarity=0.087  Sum_probs=144.3

Q ss_pred             ceeEEEEec-CCCEEEEEe-CCCeEEEEEcCCCCeeEeecCC---CCceEEEEE-------ecCCCCEEEEEeCCC----
Q 010470          269 SVLDLAITH-DNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGH---TDKVCAVDV-------SKISSRHVVSAAYDR----  332 (510)
Q Consensus       269 ~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~---~~~v~~i~~-------~~~~~~~l~s~~~dg----  332 (510)
                      ....|+|+| ++..|+++. ..+.|++.|+.++.........   ......++|       ++ ++..++++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            356899998 355555554 4567899998877655444322   235889999       88 666555554443    


Q ss_pred             ---cEEEEECCC-CeEe-----eeeeecCceeEEEEcC-CCCEEEEecCCCcEEEEECC-------CCce----------
Q 010470          333 ---TLKVWDLHK-GYCV-----NTIIFHSNCNALAFSM-DGQTIFSGHIDGNLRLWDIQ-------TGKL----------  385 (510)
Q Consensus       333 ---~i~iwd~~~-~~~~-----~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~-------~~~~----------  385 (510)
                         .|.+++... +...     ..+.....+..++++| ++.++++...++.|+.||+.       ++..          
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               367776443 2221     2333334577899999 55666677788899999987       4543          


Q ss_pred             -eee-ecccccccEEEEEEcCCCCEE-EEEecCCcEEEEEcC--Cceee--eEeecC---CC---------eeecCceeE
Q 010470          386 -LSE-VAAHSLAAVTSISLSRSGNII-LTSGRDNLHNLFDIR--SLEVC--GSLRAT---GN---------RVASNWSRS  446 (510)
Q Consensus       386 -~~~-~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~i~d~~--~~~~~--~~~~~~---~~---------~~~~~~~~~  446 (510)
                       ... +..........|+|+|+|++| ++-+..+.|+.++..  .+...  ..+.+.   ..         ....+...+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             112 222222557899999999954 445566788886653  33221  122221   00         011111134


Q ss_pred             EEc-------CCCCEEEEEcCCCeEEEEeCCCcceeeccccc------------------------CcCEEEEEEeCC-C
Q 010470          447 CIS-------PDESYVAAGSADGSVYIWSISKADIVRTLKEH------------------------TAPVLSCSWSGL-G  494 (510)
Q Consensus       447 ~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~~~~~~-~  494 (510)
                      +..       ++|.++++-..+++|+.++ .+|.. .++-+.                        -....+|+++++ |
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            554       5678888888889999999 45532 222111                        124789999997 7


Q ss_pred             CcEEEeeCCCeEEEc
Q 010470          495 KPLASADKNGVVCVW  509 (510)
Q Consensus       495 ~~l~s~~~dg~i~iw  509 (510)
                      .++++-..+..|+.+
T Consensus       457 ~lyVaD~~N~rIrki  471 (496)
T 3kya_A          457 MFYVHDQVGHTIRTI  471 (496)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCEEEEE
Confidence            666666667778765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.83  E-value=1.1e-05  Score=73.91  Aligned_cols=219  Identities=11%  Similarity=0.045  Sum_probs=131.8

Q ss_pred             EEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC---CeEeeeeee-c-CceeE
Q 010470          282 VIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK---GYCVNTIIF-H-SNCNA  356 (510)
Q Consensus       282 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~-~-~~i~~  356 (510)
                      |+.+.. +.|+..|+.+......+. ....+.+++|.+.++.++++-..++.|..+++..   +.....+.. . ..+..
T Consensus         4 ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            444443 468889998876655554 3456789999985555666666678999999875   122222221 1 35788


Q ss_pred             EEEcCCC-CEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC--CcEEEEEcCCceeeeEee
Q 010470          357 LAFSMDG-QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD--NLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       357 i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~  433 (510)
                      +++++.+ +.+++....+.|.++|+.... ...+.......+..++++|.+..|+.+...  +.|..+++..... ..+.
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~  159 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV  159 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEE
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEE
Confidence            9998744 455566778899999986443 333322222578999999976666555443  6888888764322 2221


Q ss_pred             cCCCeeecCceeEEEcCCCCEEE-EEcCCCeEEEEeCCCcceeecc-c--ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          434 ATGNRVASNWSRSCISPDESYVA-AGSADGSVYIWSISKADIVRTL-K--EHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       434 ~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ...   ......++++|++..|+ +-+..+.|..+|+.... ...+ .  .......++++.. +..+++....+.|..+
T Consensus       160 ~~~---~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          160 TEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSA  234 (316)
T ss_dssp             CSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             ECC---CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEE
Confidence            111   11234589998766555 45566799999987432 2222 1  1223467788853 4455555555666554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.80  E-value=3.6e-06  Score=76.20  Aligned_cols=196  Identities=12%  Similarity=0.303  Sum_probs=134.2

Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecC----CC---EEEEEe-C--CCeEEEEEcC--CCCee
Q 010470          235 YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD----NR---SVIAAS-S--SNNLYVWDVN--SGRVR  302 (510)
Q Consensus       235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--d~~i~iwd~~--~~~~~  302 (510)
                      |...+++.....+-+.+||+ +|+.+..+..  +.++.+..-|+    |+   ++++.. .  +++|.+|++.  ++ .+
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l  113 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TL  113 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CE
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ce
Confidence            34456777777889999999 7888887753  55666666553    22   233333 3  5799999774  33 34


Q ss_pred             EeecC------CC-CceEEEEE--ecCCCC-EEEEEeCCCcEEEEECC-------CCeEeeeeeecCceeEEEEcCCCCE
Q 010470          303 HTLTG------HT-DKVCAVDV--SKISSR-HVVSAAYDRTLKVWDLH-------KGYCVNTIIFHSNCNALAFSMDGQT  365 (510)
Q Consensus       303 ~~~~~------~~-~~v~~i~~--~~~~~~-~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~i~~i~~~~~~~~  365 (510)
                      ..+..      .. ..+..+++  +|..+. ++++...+|.+..|++.       +.+.++++...+.+..+.+.+....
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~  193 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR  193 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence            44421      11 45666777  563443 67888889999999882       3467888888888999999998899


Q ss_pred             EEEecCCCcEEEEECC-----CCceeeeeccc-ccccEEEEEE--cCCCC-EEEEEe-cCCcEEEEEcC-CceeeeEeec
Q 010470          366 IFSGHIDGNLRLWDIQ-----TGKLLSEVAAH-SLAAVTSISL--SRSGN-IILTSG-RDNLHNLFDIR-SLEVCGSLRA  434 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~-----~~~~~~~~~~~-~~~~i~~i~~--~~~~~-~l~~~~-~d~~i~i~d~~-~~~~~~~~~~  434 (510)
                      |+++-.+..|..||..     +++.+..+... -...+..|++  .+++. +|++++ .++...+||.. +.+.+..|..
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I  273 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI  273 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence            9999998778888855     34455444322 2236788887  45555 666655 67799999997 6777777753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.79  E-value=5.9e-06  Score=78.07  Aligned_cols=206  Identities=11%  Similarity=0.031  Sum_probs=133.3

Q ss_pred             ccceEEEEEecCCCE-EEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCee
Q 010470          225 EGGCASILFEYNSAR-LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVR  302 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~  302 (510)
                      ...+..++|++.+.. +++-...+.|..+++..+.....+.........+++.+.+..|+.+ ...+.|.++++......
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            345788999975554 4555567899999988665433333333455789999866655554 45678999887754433


Q ss_pred             EeecCCCCceEEEEEecCCCCEEEEEeCC-CcEEEEECCCCeEeeeee-e-cCceeEEEEcCCCCEEE-EecCCCcEEEE
Q 010470          303 HTLTGHTDKVCAVDVSKISSRHVVSAAYD-RTLKVWDLHKGYCVNTII-F-HSNCNALAFSMDGQTIF-SGHIDGNLRLW  378 (510)
Q Consensus       303 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-~-~~~i~~i~~~~~~~~l~-~~~~dg~i~i~  378 (510)
                      ..+.........+++.|.++.++++-... +.|..+++.... ...+. . -..++.++++|++..|+ +-...+.|..+
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence            33444446678999998555555555445 789999986433 22332 2 23478999998665554 55667789999


Q ss_pred             ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470          379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  433 (510)
                      |+.... ...+.......+..+++ ..+.++++....+.|..++..++.....+.
T Consensus       274 d~dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          274 NLDGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             CTTSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eCCCCe-eEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            986433 33332222356788888 445666666677889888876666555554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.78  E-value=1.2e-06  Score=90.57  Aligned_cols=192  Identities=9%  Similarity=0.003  Sum_probs=111.8

Q ss_pred             ceEEEEEe-cCCCEEEEeeC-C----CeEEEEeCCCC-cceecccccccceeEEEEecCCCEEEEEeCC-----CeEEEE
Q 010470          227 GCASILFE-YNSARLISGGQ-D----KSIKLWDTNTG-SLSSTLYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVW  294 (510)
Q Consensus       227 ~v~~~~~s-~~~~~l~s~~~-d----g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw  294 (510)
                      .+...+|| |||++||.+.. +    ..|+++|+.++ +.+...  -......+.|+|||+.|+....+     ..|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            68889999 99998875443 2    35999999988 632211  01124578999999988887764     368888


Q ss_pred             EcCCCCe--eEeec-CCCCceEEEEEecCCCCEEEEEe---CCCcEEEEECCCC--eE-eeeeee-c-CceeEEEEcCCC
Q 010470          295 DVNSGRV--RHTLT-GHTDKVCAVDVSKISSRHVVSAA---YDRTLKVWDLHKG--YC-VNTIIF-H-SNCNALAFSMDG  363 (510)
Q Consensus       295 d~~~~~~--~~~~~-~~~~~v~~i~~~~~~~~~l~s~~---~dg~i~iwd~~~~--~~-~~~~~~-~-~~i~~i~~~~~~  363 (510)
                      ++.++..  ...+. ........+.|+| ++++|+..+   ....|.++|+.++  .. +..+.. . ....++.|+. |
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g  330 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T  330 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence            8877642  22332 2234567789999 677666544   2456888999765  22 022222 2 2234444443 5


Q ss_pred             CEEE-EecCC----CcEEEEECCCCceeee--ecccccccEEEEEEcCCCCEEEEEecCCc--EEEEEc
Q 010470          364 QTIF-SGHID----GNLRLWDIQTGKLLSE--VAAHSLAAVTSISLSRSGNIILTSGRDNL--HNLFDI  423 (510)
Q Consensus       364 ~~l~-~~~~d----g~i~i~d~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~--i~i~d~  423 (510)
                      ..|+ ....+    ..|..+|+.++.....  +.......+..+.+. .+.++++...++.  +.++++
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            5444 44333    3677778765322222  222221245556654 2344555666664  556665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.75  E-value=7.6e-06  Score=74.89  Aligned_cols=215  Identities=9%  Similarity=-0.002  Sum_probs=129.8

Q ss_pred             CCeEEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee-e-ecCceeEEEEcC-C
Q 010470          288 SNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-I-FHSNCNALAFSM-D  362 (510)
Q Consensus       288 d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~i~~i~~~~-~  362 (510)
                      ...|+.+++....  ....+. ....+.++.|.+.++.++++-...+.|..+++..+.....+ . .-..+..+++.+ .
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            4678999987653  222222 22456789999855666666667789999998765322222 2 224577899987 4


Q ss_pred             CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec--CCcEEEEEcCCceeeeEeecCCCeee
Q 010470          363 GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR--DNLHNLFDIRSLEVCGSLRATGNRVA  440 (510)
Q Consensus       363 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~  440 (510)
                      +.++++-...+.|.++++... ....+.......+..++++|.+..|+.+..  .+.|..+++.............    
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l----  165 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI----  165 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSC----
T ss_pred             CeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC----
Confidence            555566667789999998543 333333233367899999997666666553  5788888876433222221111    


Q ss_pred             cCceeEEEcCCCCEE-EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          441 SNWSRSCISPDESYV-AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       441 ~~~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      .....++++|++..| ++-+..+.|..+++........+........++++..+ ..+++-...+.|..+
T Consensus       166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~  234 (318)
T 3sov_A          166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILAC  234 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEE
T ss_pred             CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEE
Confidence            123458999865554 45556789999998643322222223445677777533 344444445555543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.71  E-value=0.00015  Score=66.89  Aligned_cols=252  Identities=10%  Similarity=0.095  Sum_probs=159.4

Q ss_pred             CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEE
Q 010470          246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV  325 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  325 (510)
                      +..|.|.|+.++..+..-.-   .--+.-.+|..+.++.-. ..++.|||+++...+..+.- ...|.--.|..  .+.|
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis--~~~l  119 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTV  119 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEE--TTEE
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecC--CCeE
Confidence            44899999987654322111   113455678887666655 67999999999888887774 45677777765  4555


Q ss_pred             EEEeCCCcEEEEECCC-CeEeeeeeec-----CceeEEEEcCCCCEEEEec-------CCCcEEEEECCCCceeeeeccc
Q 010470          326 VSAAYDRTLKVWDLHK-GYCVNTIIFH-----SNCNALAFSMDGQTIFSGH-------IDGNLRLWDIQTGKLLSEVAAH  392 (510)
Q Consensus       326 ~s~~~dg~i~iwd~~~-~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~  392 (510)
                      +..+ +..|+-|++.. ..+++.+..+     ..|..-..+++.++++..+       -.|.+.+|....+ ..+.+.+|
T Consensus       120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh  197 (494)
T 1bpo_A          120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  197 (494)
T ss_dssp             EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred             EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence            5555 67899999974 3455666554     2377777889999887432       2477889997543 44555555


Q ss_pred             ccccEEEEEEcCCC---CEEEEEec---CCcEEEEEcCCc---ee-----eeEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470          393 SLAAVTSISLSRSG---NIILTSGR---DNLHNLFDIRSL---EV-----CGSLRATGNRVASNWSRSCISPDESYVAAG  458 (510)
Q Consensus       393 ~~~~i~~i~~~~~~---~~l~~~~~---d~~i~i~d~~~~---~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  458 (510)
                      . .....+.+..+.   .+++.+..   .+.++|.++...   ..     ...+..+......-...+.+|+.-..++.-
T Consensus       198 a-a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi  276 (494)
T 1bpo_A          198 A-ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (494)
T ss_dssp             E-EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred             e-eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence            3 333333332111   13333333   278999988532   10     011111111111112336778888889999


Q ss_pred             cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470          459 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVC  507 (510)
Q Consensus       459 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  507 (510)
                      +.-|.|++||+.++.++..-+-...+|...+-+....-++.....|.|.
T Consensus       277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred             ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence            9999999999999999887766677777666666655566666777653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.69  E-value=4.8e-05  Score=72.10  Aligned_cols=209  Identities=11%  Similarity=0.009  Sum_probs=132.0

Q ss_pred             cccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCC----cceecccccccceeEEEEecCCCEEEEE-eCCCeEEEEEcC
Q 010470          224 HEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVN  297 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~  297 (510)
                      ....+.+++|++.+..| ++-...+.|..+++...    .....+.........+++.+.+..|+.+ ...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            44578899999865554 55556788999998752    2222233344567889999855555544 567899999987


Q ss_pred             CCCeeEeecCCCCceEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEE-ecCCCc
Q 010470          298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFS-GHIDGN  374 (510)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~-~~~dg~  374 (510)
                      .......+.........+++.|..+.++++-.. .+.|...++........+... ..++.++++|++..|+. -...+.
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            655444444445567899999844544444422 478999998643322222222 45899999987766654 456778


Q ss_pred             EEEEECCCCceeeeecc-cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470          375 LRLWDIQTGKLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  433 (510)
                      |..+|+........... .......++++. .+.++++....+.|..+|..+++....+.
T Consensus       270 I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          270 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            99999864433222222 112456677773 34566666677889999977776665554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.69  E-value=2.5e-05  Score=70.14  Aligned_cols=205  Identities=8%  Similarity=0.107  Sum_probs=130.5

Q ss_pred             ccccccceEEEEEecCCCEEEEee-CCCeEEEEeCCCCccee-cccc----c--ccceeEEEE---ecCCCEEEEEe---
Q 010470          221 INAHEGGCASILFEYNSARLISGG-QDKSIKLWDTNTGSLSS-TLYG----C--LGSVLDLAI---THDNRSVIAAS---  286 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~l~~~~---  286 (510)
                      +.+...-.-++.|++....|+.++ ..+.|..|+...+.... .+.+    .  ...+..+.|   .|+++++++..   
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            344445566889988666666665 78999999998654322 2222    1  114578999   68877776544   


Q ss_pred             ----------CCCeEEEEEcC---CCCeeEeec--CC-----------CCceEEEEEecCCCCEEEEEeCC-CcEEEEEC
Q 010470          287 ----------SSNNLYVWDVN---SGRVRHTLT--GH-----------TDKVCAVDVSKISSRHVVSAAYD-RTLKVWDL  339 (510)
Q Consensus       287 ----------~d~~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~  339 (510)
                                .+..|..||+.   +++.+....  ..           ......+++.+ +++..++++.. +.|..++.
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeC
Confidence                      26789999999   787665443  11           12477899988 78888888888 88888887


Q ss_pred             CCCeEeeeee-ec------CceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee-eeec--cc--ccccEEEE-EEcCCC
Q 010470          340 HKGYCVNTII-FH------SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL-SEVA--AH--SLAAVTSI-SLSRSG  406 (510)
Q Consensus       340 ~~~~~~~~~~-~~------~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~--~~--~~~~i~~i-~~~~~~  406 (510)
                      ... .+..+. ..      ...+.|+++|+|+.|++....|.|..+|+...... ....  +.  .......| ..-.+|
T Consensus       167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G  245 (334)
T 2p9w_A          167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN  245 (334)
T ss_dssp             TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred             CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence            643 222221 11      12679999999999888877999999998743220 1111  11  11233443 333467


Q ss_pred             CE-EEEEecCCcEEEEEcCCce
Q 010470          407 NI-ILTSGRDNLHNLFDIRSLE  427 (510)
Q Consensus       407 ~~-l~~~~~d~~i~i~d~~~~~  427 (510)
                      +. +++....+.+.+.+...++
T Consensus       246 ~vllV~~~~~~~~~l~S~DgW~  267 (334)
T 2p9w_A          246 ESVLVGARAPYAISFRSWDNWK  267 (334)
T ss_dssp             EEEEEEEETTEEEEEECSSTTS
T ss_pred             EEEEEEcCCCCEEEEECCCCcc
Confidence            77 4445556666666655433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.69  E-value=6.2e-05  Score=75.53  Aligned_cols=230  Identities=8%  Similarity=-0.035  Sum_probs=144.8

Q ss_pred             EEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEE
Q 010470          239 RLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVD  316 (510)
Q Consensus       239 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~  316 (510)
                      +|+.+ ..+.|+..++.+......+. ..-..+..++|++.+..|+.+. .++.|+.+++........+........+++
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA   86 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA   86 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence            44433 35678889987654433222 2235678999999877777665 678999999876544444443334577888


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCCeEeeee-eecCceeEEEEcCCCCEEEEec--CCCcEEEEECCCCceeeeecccc
Q 010470          317 VSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHS  393 (510)
Q Consensus       317 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~  393 (510)
                      +.+..++++++-...+.|.+.++........+ ..-..+..++++|....|+...  ..+.|...++..... ..+.. .
T Consensus        87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~-~  164 (628)
T 4a0p_A           87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVP-N  164 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC-S
T ss_pred             EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEEC-C
Confidence            88755666677667789999998654322222 2224589999998555555433  357888888754433 33322 2


Q ss_pred             cccEEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 010470          394 LAAVTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKA  472 (510)
Q Consensus       394 ~~~i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  472 (510)
                      ...+..|++++++..|+.+ ...+.|..+|+..... ..+......    ...+++.. +.++++-...+.|...|..++
T Consensus       165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~----P~glav~~-~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPH----PFGLTQYQ-DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSC----EEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCC----ceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence            3678999999976665555 4567899999876443 222221111    12355554 455566666888999997766


Q ss_pred             ceeec
Q 010470          473 DIVRT  477 (510)
Q Consensus       473 ~~~~~  477 (510)
                      +....
T Consensus       239 ~~~~~  243 (628)
T 4a0p_A          239 QNRTI  243 (628)
T ss_dssp             CSCEE
T ss_pred             CceEE
Confidence            54433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.69  E-value=2.4e-05  Score=80.33  Aligned_cols=228  Identities=10%  Similarity=0.021  Sum_probs=140.0

Q ss_pred             CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCC----CeeEeecCCCCceEEEEEecC
Q 010470          246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKI  320 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~  320 (510)
                      ...|+..++........+ .....+..++|++.+..|+.+. ..+.|+.+++...    .....+........+|++.+.
T Consensus       403 ~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             BSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             ccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            345777777655443333 3355678899998666666554 5678999988753    223334434456778999885


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEec-CC-CcEEEEECCCCceeeeecccccccE
Q 010470          321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGH-ID-GNLRLWDIQTGKLLSEVAAHSLAAV  397 (510)
Q Consensus       321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~i  397 (510)
                      .++++++-...+.|.+.++........+.. ...+..|+++|.+..|+... .. +.|.+.++. |.....+.......+
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~~~l~~P  560 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWP  560 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEeCCCCCc
Confidence            566777777789999999975443333222 24589999999755555443 33 789999985 444444433333679


Q ss_pred             EEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470          398 TSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR  476 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  476 (510)
                      ..|++++.+..|+.+ ...+.|..+++........+.... .... ...+++. .+.++++-...+.|...+..+|+.+.
T Consensus       561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~-~l~~-P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~  637 (791)
T 3m0c_C          561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-RLAH-PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  637 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT-TTSS-EEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCC-ccCC-CCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceE
Confidence            999999876666555 455789999987544433332211 1111 1124442 33455555667889988877776554


Q ss_pred             cc
Q 010470          477 TL  478 (510)
Q Consensus       477 ~~  478 (510)
                      .+
T Consensus       638 ~l  639 (791)
T 3m0c_C          638 LL  639 (791)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.66  E-value=2.1e-06  Score=87.43  Aligned_cols=232  Identities=14%  Similarity=0.059  Sum_probs=132.6

Q ss_pred             cceEEEEEecCCCEEEEeeC-CCeEEEEeCCCCcceeccccccc-ceeEEEEecCCCEEEEEe-CC-----CeEEEEEcC
Q 010470          226 GGCASILFEYNSARLISGGQ-DKSIKLWDTNTGSLSSTLYGCLG-SVLDLAITHDNRSVIAAS-SS-----NNLYVWDVN  297 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~  297 (510)
                      ....++++.++|.+++.||. ++.+.+||..+++-...-..+.. .-.+++..++++.++.|+ .+     ..+.+||..
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            34456778889999999984 55899999887654322111111 123456667999999988 34     479999998


Q ss_pred             CCCeeEee----cCCCCceEEEEEecCCCCEEEEEeCC---------CcEEEEECCCCeEeeeeeecC----------ce
Q 010470          298 SGRVRHTL----TGHTDKVCAVDVSKISSRHVVSAAYD---------RTLKVWDLHKGYCVNTIIFHS----------NC  354 (510)
Q Consensus       298 ~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~----------~i  354 (510)
                      +++....-    ......-....+.. ++..++.|+.+         ..+..||..+...........          ..
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred             CCcceeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence            76533220    00000000001112 34445555444         356788888765443322111          12


Q ss_pred             eEEEEc-CCCCEEEEecCCC-----------cEEEEECCCCceeeee--cccccccEEEEEEcCCCCEEEEEecC-----
Q 010470          355 NALAFS-MDGQTIFSGHIDG-----------NLRLWDIQTGKLLSEV--AAHSLAAVTSISLSRSGNIILTSGRD-----  415 (510)
Q Consensus       355 ~~i~~~-~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----  415 (510)
                      .++.+. .+++++++|+.++           .|.+||..+..-....  ..+....-.+....|+|++++.|+.+     
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            334443 3777888887543           6788888776543332  12221223455677899999999854     


Q ss_pred             ------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC
Q 010470          416 ------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA  460 (510)
Q Consensus       416 ------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  460 (510)
                            ..+.+||..+.+-.. +.. ............+.|+|+.++.|+.
T Consensus       482 ~~~~~~~~v~~ydp~t~~W~~-~~~-~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTFYK-QNP-NSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEEEE-CCC-CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCcccceEEEcCCCCceee-cCC-CCCccccccHhhcCCCcEEEecCCC
Confidence                  468999998755332 111 1111112223556799999999985

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.64  E-value=1.7e-05  Score=71.87  Aligned_cols=193  Identities=16%  Similarity=0.291  Sum_probs=127.7

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC---CCC---EEE-EEeC--CCcEEEEEC--CCCeEee
Q 010470          278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI---SSR---HVV-SAAY--DRTLKVWDL--HKGYCVN  346 (510)
Q Consensus       278 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~---~l~-s~~~--dg~i~iwd~--~~~~~~~  346 (510)
                      ....++.....+-+.+||+ +|+.+..+..  +.++.+.+-|.   ++.   +++ +.-.  +++|.+|++  .++. +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            4456666777889999999 7998888864  56777777661   111   233 3333  578999966  3443 43


Q ss_pred             eee-------ec-CceeEEEE--cCC-CC-EEEEecCCCcEEEEECC-------CCceeeeecccccccEEEEEEcCCCC
Q 010470          347 TII-------FH-SNCNALAF--SMD-GQ-TIFSGHIDGNLRLWDIQ-------TGKLLSEVAAHSLAAVTSISLSRSGN  407 (510)
Q Consensus       347 ~~~-------~~-~~i~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~  407 (510)
                      .+.       .. ..+..+|+  +|. +. ++++...+|.+..|++.       +.+.+..+...  +.+..+..++...
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~EgcvvDd~~g  192 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGMAADDEYG  192 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEEEEETTTT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceEEEcCCCC
Confidence            331       11 45777888  774 44 67788888999999882       33566777765  6788999999999


Q ss_pred             EEEEEecCCcEEEEEcC-----CceeeeEeecCCCeeecCceeEEE--cCCCC-EEEEEc-CCCeEEEEeCC-Ccceeec
Q 010470          408 IILTSGRDNLHNLFDIR-----SLEVCGSLRATGNRVASNWSRSCI--SPDES-YVAAGS-ADGSVYIWSIS-KADIVRT  477 (510)
Q Consensus       408 ~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~  477 (510)
                      .|+.+-.+.-|..|+..     ++..+..+.  ...+...+-.+++  .++|+ ||++++ .++++.+||.. +.+.+..
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~--~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD--GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBS--SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEec--CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            99999998777777755     234443332  2222223344666  55655 555555 67899999986 5666666


Q ss_pred             c
Q 010470          478 L  478 (510)
Q Consensus       478 ~  478 (510)
                      +
T Consensus       271 f  271 (355)
T 3amr_A          271 F  271 (355)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.64  E-value=4.9e-07  Score=92.18  Aligned_cols=240  Identities=10%  Similarity=0.013  Sum_probs=141.5

Q ss_pred             CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCC----CCeeEeecCCCCceEEEEEecC
Q 010470          246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNS----GRVRHTLTGHTDKVCAVDVSKI  320 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~  320 (510)
                      .+.|+..++.+......+.. ...+..++|++.+..|+.+. ..+.|+.+++..    ......+.........+++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            35788888876655443333 34567899999877777665 567899999875    2222222222234556788764


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEec-CC-CcEEEEECCCCceeeeecccccccE
Q 010470          321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGH-ID-GNLRLWDIQTGKLLSEVAAHSLAAV  397 (510)
Q Consensus       321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~i  397 (510)
                      .++++++-...+.|.++++........+.. ...+..++++|.+.+|+... .. +.|.++++.. .....+........
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~P  542 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWP  542 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCc
Confidence            566666666678999999875543333322 24578899999655554433 33 7888888743 33333322222567


Q ss_pred             EEEEEcCCCCEE-EEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470          398 TSISLSRSGNII-LTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR  476 (510)
Q Consensus       398 ~~i~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  476 (510)
                      ..|+|+|++..| ++-...+.|.++++........+... .... ....+++..+ .++++....+.|..++..+++.+.
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~~-~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-KRLA-HPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS-SSCS-SCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC-CcCC-CceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence            889999875544 55556678999998753332222211 1111 1112455443 455555667899999988887776


Q ss_pred             cccccCcCEEEEEE
Q 010470          477 TLKEHTAPVLSCSW  490 (510)
Q Consensus       477 ~~~~~~~~v~~~~~  490 (510)
                      .+......+.+|++
T Consensus       620 ~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          620 LLAENLLSPEDMVL  633 (699)
T ss_dssp             CCCTTCSSCCCCCB
T ss_pred             EeecCCCCCcEEEE
Confidence            66443333344443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.63  E-value=0.00011  Score=73.55  Aligned_cols=160  Identities=7%  Similarity=-0.042  Sum_probs=102.3

Q ss_pred             cceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC--CCeEEEEEcCCCCee
Q 010470          226 GGCASILFEYNSA-RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS--SNNLYVWDVNSGRVR  302 (510)
Q Consensus       226 ~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~  302 (510)
                      .....+++++.+. ++++-...+.|.+.+++.......+.........|++.|.+.+|+.+..  .+.|...++......
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            5688999999555 4555566789999999754332222244456789999998777776663  457777776643333


Q ss_pred             EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-ecCceeEEEEcCCCCEEEEecCCCcEEEEECC
Q 010470          303 HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQ  381 (510)
Q Consensus       303 ~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  381 (510)
                      ......-....++++.+.++.++++-...+.|..+|+.......... ....+..+++..+ ..+++....+.|...|..
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~  242 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY  242 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence            33333445678999998555555665667889999986543322222 1233567787655 555566677889999987


Q ss_pred             CCcee
Q 010470          382 TGKLL  386 (510)
Q Consensus       382 ~~~~~  386 (510)
                      +++..
T Consensus       243 tg~~~  247 (619)
T 3s94_A          243 TGEGL  247 (619)
T ss_dssp             SCCCC
T ss_pred             CCccc
Confidence            76543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.62  E-value=0.00048  Score=69.10  Aligned_cols=199  Identities=10%  Similarity=-0.001  Sum_probs=127.5

Q ss_pred             cceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeE
Q 010470          226 GGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~  303 (510)
                      ..+.+++|++.+..| ++-..++.|..++++.......+.........+++.+.+..|+.+. ..+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            457899999865555 5555678999999875543333333334577899988766665554 56789999987544333


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEE-eCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCCcEEEEECC
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSA-AYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQ  381 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~  381 (510)
                      .+...-....++++.|..+.++++- +..+.|...++........+..-..++.+++++++..|+ +-...+.|..+|+.
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence            3334445678999998545444443 225788888886443333333335689999999766555 45567789999986


Q ss_pred             CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCce
Q 010470          382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLE  427 (510)
Q Consensus       382 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~  427 (510)
                      .... ..+.... ..+.++++.. +.++++....+.|...|..++.
T Consensus       197 G~~~-~v~~~~l-~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          197 GLNR-EVIADDL-PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             SCSC-EEEEECC-SCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             CCce-EEeeccC-CCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            5433 3333222 4566787765 4455555556778887765443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.60  E-value=5.9e-05  Score=75.61  Aligned_cols=225  Identities=8%  Similarity=0.042  Sum_probs=134.7

Q ss_pred             CCeEEEEeCCCCc-ceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCe-eEeecCCCCceEEEEEecCCC
Q 010470          246 DKSIKLWDTNTGS-LSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRV-RHTLTGHTDKVCAVDVSKISS  322 (510)
Q Consensus       246 dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~  322 (510)
                      ...|+..++.... ....+......+..++|++.+..|+.+. ..+.|..+++..... ...+........++++.+.++
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            4578888887543 2222233345678999999877777665 467899998875532 233333335788999988566


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEeeeee--ecCceeEEEEcCCCCEEEEec--CCCcEEEEECCCCceeeeecccccccEE
Q 010470          323 RHVVSAAYDRTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQTIFSGH--IDGNLRLWDIQTGKLLSEVAAHSLAAVT  398 (510)
Q Consensus       323 ~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~  398 (510)
                      +++++-...+.|.+.++..... ..+.  .-..+..++++|.+..|+...  ..+.|...++. |.....+.......+.
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~  174 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN  174 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence            6667767789999999975433 2332  224588999999755555433  24678888874 4333333322336789


Q ss_pred             EEEEcCCCCEEEE-EecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeec
Q 010470          399 SISLSRSGNIILT-SGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT  477 (510)
Q Consensus       399 ~i~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  477 (510)
                      .|++++++..|+. -...+.|..+|+.............   . ....+++..+ ..+++-..++.|...|..+++....
T Consensus       175 Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~---~-~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          175 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL---P-HPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             EEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCC---C-CceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence            9999997665554 4556789999987544332222111   1 1123666655 5555556678899999877754433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.57  E-value=2.4e-05  Score=70.14  Aligned_cols=202  Identities=11%  Similarity=0.039  Sum_probs=127.2

Q ss_pred             cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-C-------ceeEEEE---cCCCCEEEEec----
Q 010470          306 TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-S-------NCNALAF---SMDGQTIFSGH----  370 (510)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-------~i~~i~~---~~~~~~l~~~~----  370 (510)
                      ........++.|.+..+.++++.-..++|..||...+......... .       .+..+.|   .|+++++++..    
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            3344455678898844555555557999999999766443332111 1       2679999   68887777543    


Q ss_pred             ---------CCCcEEEEECC---CCceeeeeccc------------ccccEEEEEEcCCCCEEEEEecC-CcEEEEEcCC
Q 010470          371 ---------IDGNLRLWDIQ---TGKLLSEVAAH------------SLAAVTSISLSRSGNIILTSGRD-NLHNLFDIRS  425 (510)
Q Consensus       371 ---------~dg~i~i~d~~---~~~~~~~~~~~------------~~~~i~~i~~~~~~~~l~~~~~d-~~i~i~d~~~  425 (510)
                               .+..|..||+.   +++.+......            .......++..++|+..++++.. +.|..++...
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                     25779999998   78777655421            11358899999999999999888 8888888765


Q ss_pred             ceeeeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce--eeccc--c---cCcCEEEE-EEeCCCCc
Q 010470          426 LEVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI--VRTLK--E---HTAPVLSC-SWSGLGKP  496 (510)
Q Consensus       426 ~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~--~---~~~~v~~~-~~~~~~~~  496 (510)
                      ......+ ...........+.++++|+|+.|++....|.+..+|+.....  +. ..  +   .-.....+ .--.+|+.
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~v  247 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNES  247 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEE
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEE
Confidence            4322111 111122223456799999999888877799999999874322  11 11  1   11223443 33346666


Q ss_pred             -EEEeeCCCeEEE
Q 010470          497 -LASADKNGVVCV  508 (510)
Q Consensus       497 -l~s~~~dg~i~i  508 (510)
                       |++.+..+.+.+
T Consensus       248 llV~~~~~~~~~l  260 (334)
T 2p9w_A          248 VLVGARAPYAISF  260 (334)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             EEEEcCCCCEEEE
Confidence             555555555544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.53  E-value=0.00017  Score=74.01  Aligned_cols=207  Identities=11%  Similarity=-0.009  Sum_probs=127.4

Q ss_pred             ccceEEEEEecCCC-EEEEeeCCCeEEEEeCCCC----cceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 010470          225 EGGCASILFEYNSA-RLISGGQDKSIKLWDTNTG----SLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNS  298 (510)
Q Consensus       225 ~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~  298 (510)
                      ...+.+++|++.+. ++++-...+.|+.+++...    .....+.........|++.+.+..|+.+. ..+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            34577899998544 4555566788999988753    22222333445667899998886666554 678999999875


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEeCC-CcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEE-ecCCCcE
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-RTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFS-GHIDGNL  375 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~-~~~dg~i  375 (510)
                      ......+........+|++.|..+.++++-... +.|.+.++........+... ..++.|++++.+..|+. -...+.|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            544334444455688999999445555544333 78999998644333222222 45899999976665554 4556789


Q ss_pred             EEEECCCCceeeeeccc-ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEe
Q 010470          376 RLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL  432 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  432 (510)
                      ..+++........+... ......+|++.. +.++++-...+.|...|..++..+..+
T Consensus       583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            99998544333332221 113456677643 345555556678888887666544444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.49  E-value=0.00014  Score=67.53  Aligned_cols=224  Identities=9%  Similarity=-0.008  Sum_probs=122.8

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe--eEeec---CCCCceEEEEEecC---CCCEEEEEeCC-----CcE
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV--RHTLT---GHTDKVCAVDVSKI---SSRHVVSAAYD-----RTL  334 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~---~~~~~v~~i~~~~~---~~~~l~s~~~d-----g~i  334 (510)
                      .....++|.|+|+ ++++..+|.|++++  ++..  +..+.   ........++++|.   ++.++++....     +.|
T Consensus        31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            3567899999998 55556679999998  4432  11111   12356789999993   23444443322     678


Q ss_pred             EEEECCCCe-----Ee-eeeee----cCceeEEEEcCCCCEEEEecC-------------CCcEEEEECCCC--------
Q 010470          335 KVWDLHKGY-----CV-NTIIF----HSNCNALAFSMDGQTIFSGHI-------------DGNLRLWDIQTG--------  383 (510)
Q Consensus       335 ~iwd~~~~~-----~~-~~~~~----~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--------  383 (510)
                      ..|+...+.     .+ ..+..    ......++|.|+|.++++.+.             .|.|..++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            888876442     11 11221    123578999999976665432             256777776420        


Q ss_pred             ----ceeeeecccccccEEEEEEcC-CCCEEEEEecCCcE------EEEEcCCce------------------eeeEeec
Q 010470          384 ----KLLSEVAAHSLAAVTSISLSR-SGNIILTSGRDNLH------NLFDIRSLE------------------VCGSLRA  434 (510)
Q Consensus       384 ----~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i------~i~d~~~~~------------------~~~~~~~  434 (510)
                          .....+.... .....++|+| +|.++++-...+.+      .|.-+..+.                  +...+..
T Consensus       188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~  266 (352)
T 2ism_A          188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ  266 (352)
T ss_dssp             TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC
Confidence                0111111111 4577899999 66665554433331      122222211                  0001100


Q ss_pred             CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce------eecccccCcCEEEEEEeCCCCcEEEee
Q 010470          435 TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI------VRTLKEHTAPVLSCSWSGLGKPLASAD  501 (510)
Q Consensus       435 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~~  501 (510)
                      +     .....++| .+|.++++....+.|...++.....      ...+-.....+.++++.|||.++++..
T Consensus       267 ~-----~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          267 G-----FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             C-----CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             C-----CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            0     11233556 4677777776777888887764431      112212235789999999998666543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.48  E-value=0.00018  Score=66.90  Aligned_cols=221  Identities=14%  Similarity=0.090  Sum_probs=124.3

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecc---cccccceeEEEEecC---CCEEEEEeC-C-----CeE
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTL---YGCLGSVLDLAITHD---NRSVIAASS-S-----NNL  291 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~i  291 (510)
                      ....+++|.|+|+++++ ..+|.|.+++  ++..  +..+   .........++|+|+   +..|+++.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45779999999985555 5569999998  3432  1111   122456789999998   556655543 2     678


Q ss_pred             EEEEcCCCC-----e-eEeec---CCCCceEEEEEecCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q 010470          292 YVWDVNSGR-----V-RHTLT---GHTDKVCAVDVSKISSRHVVSAAY-------------DRTLKVWDLHKG-------  342 (510)
Q Consensus       292 ~iwd~~~~~-----~-~~~~~---~~~~~v~~i~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~-------  342 (510)
                      ..|+...+.     . +..+.   +.......+.|.| ++.++++.+.             .|.|.-++....       
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            888876442     1 11132   1112346789999 6666666432             256777776431       


Q ss_pred             -----eEeeee-eecCceeEEEEcC-CCCEEEEecCCCc--------EEEEECCCCc------------------eeeee
Q 010470          343 -----YCVNTI-IFHSNCNALAFSM-DGQTIFSGHIDGN--------LRLWDIQTGK------------------LLSEV  389 (510)
Q Consensus       343 -----~~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~dg~--------i~i~d~~~~~------------------~~~~~  389 (510)
                           .....+ .....+..++|+| +|.++++-...+.        |.+..  .+.                  ++..+
T Consensus       187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEec
Confidence                 011111 2234578899999 6776665433332        33332  221                  22222


Q ss_pred             cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCcee------eeEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          390 AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV------CGSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       390 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      . ++ ..+..++| .+|.++++....+.|...++.....      ...+...    ...+..+++.|||.++++..
T Consensus       265 ~-~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~----~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 P-QG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG----FGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             T-TC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES----SCCEEEEEECTTSCEEEEEC
T ss_pred             C-CC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc----CCCeeEEEECCCCcEEEEEe
Confidence            1 12 45677887 4677777666777888877764321      1111111    12344588899987766654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.45  E-value=0.00052  Score=63.72  Aligned_cols=228  Identities=13%  Similarity=0.078  Sum_probs=128.0

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc-ceecc---cccccceeEEEEecC---CCEEEEEeC----C----C
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS-LSSTL---YGCLGSVLDLAITHD---NRSVIAASS----S----N  289 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d----~  289 (510)
                      -....+++|.|+|+++++ ..+|.|.+++. ++. .+..+   .........|+|+|+   +..|+++..    +    +
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            345789999999975554 55699999974 444 22211   122356789999998   555655543    3    5


Q ss_pred             eEEEEEcCCC--C-----ee-EeecC-CCCceEEEEEecCCCCEEEEEeC-------------CCcEEEEECCCCe----
Q 010470          290 NLYVWDVNSG--R-----VR-HTLTG-HTDKVCAVDVSKISSRHVVSAAY-------------DRTLKVWDLHKGY----  343 (510)
Q Consensus       290 ~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~i~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~----  343 (510)
                      .|..|+...+  .     .+ ..+.. .......+.|.| ++.++++.+.             .|.|.-++....-    
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            7888887654  1     11 11221 112346788998 6776666432             2566666664220    


Q ss_pred             ---Eeeee-eecCceeEEEEcC-CCCEEEEecCCC---cEEEEECCC--------C--------ceeeeecccccccEEE
Q 010470          344 ---CVNTI-IFHSNCNALAFSM-DGQTIFSGHIDG---NLRLWDIQT--------G--------KLLSEVAAHSLAAVTS  399 (510)
Q Consensus       344 ---~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~dg---~i~i~d~~~--------~--------~~~~~~~~~~~~~i~~  399 (510)
                         ....+ .....+..++|+| +|.++++-...+   .|.+.....        +        .++..+...+ ..+..
T Consensus       185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~-~ap~G  263 (354)
T 3a9g_A          185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET-WAPSG  263 (354)
T ss_dssp             SSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC-CCEEE
T ss_pred             CCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC-cCCcc
Confidence               01111 2334578999999 677666543322   243332110        0        1222221122 56888


Q ss_pred             EEEc-------CCCCEEEEEecCCcEEEEEcCCc-eee--eEeecCCCeeecCceeEEEcCCCCEEEEEc
Q 010470          400 ISLS-------RSGNIILTSGRDNLHNLFDIRSL-EVC--GSLRATGNRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       400 i~~~-------~~~~~l~~~~~d~~i~i~d~~~~-~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      +.|.       .+|.++++....+.|..+++... ...  ..+...   ....+..+++.|||.+.++..
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~---~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN---VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT---TSCCEEEEEECTTSCEEEEEC
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC---CCCCeeEEEECCCCcEEEEEe
Confidence            8884       56777777777788988888753 222  122111   012344588899987666654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.44  E-value=6.2e-05  Score=68.44  Aligned_cols=226  Identities=14%  Similarity=0.129  Sum_probs=119.9

Q ss_pred             CCCEEEEee-CC-----CeEEEEeCCCCccee--cccccccceeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCC--
Q 010470          236 NSARLISGG-QD-----KSIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGR--  300 (510)
Q Consensus       236 ~~~~l~s~~-~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~--  300 (510)
                      ++.+++.|+ .+     ..+.+||+.+++-..  .+......  ..+...++..++.|+.+     ..+.+||+.+++  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY--VASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS--CEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc--ccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            345666666 32     368889987765322  11111111  11222366777777754     468999988766  


Q ss_pred             -eeEe--ecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEec
Q 010470          301 -VRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGH  370 (510)
Q Consensus       301 -~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~  370 (510)
                       -...  +....... ++...  ++.+++.|+.+     ..+.+||+.+++....-..+..  -.+++. .++..++.|+
T Consensus        92 ~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG  167 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLA-GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG  167 (301)
T ss_dssp             CCEEECCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred             eeEECCCCCCCccce-eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence             3222  11111111 22222  56777777654     3688999988765443322221  122222 2677777776


Q ss_pred             CC-----CcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCee
Q 010470          371 ID-----GNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       371 ~d-----g~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~  439 (510)
                      .+     ..+.+||+.+.+-...-..... .....+.+  ++.+++.|+.+     ..+.+||+.+..-...-..+....
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  245 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC  245 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence            54     4589999877653322111110 11222222  56777777764     468999998765433221111111


Q ss_pred             ecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcc
Q 010470          440 ASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKAD  473 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  473 (510)
                        ..  .+...++.+++.|+.+     ..|.+||+.+.+
T Consensus       246 --~~--~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          246 --YV--GATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             --SC--EEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             --ce--eEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence              11  2223367777887765     357888887643

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.43  E-value=2.6e-05  Score=80.58  Aligned_cols=192  Identities=10%  Similarity=0.077  Sum_probs=107.3

Q ss_pred             ceEEEEEe-cCCCCEEEEE-eCCC----cEEEEECCCC-eEeeeeeecCceeEEEEcCCCCEEEEecCC-----CcEEEE
Q 010470          311 KVCAVDVS-KISSRHVVSA-AYDR----TLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFSGHID-----GNLRLW  378 (510)
Q Consensus       311 ~v~~i~~~-~~~~~~l~s~-~~dg----~i~iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~  378 (510)
                      .+....|+ | +++.|+.+ +.+|    .|+++|+.++ ..+... .......+.|+|||+.|+....+     ..|+++
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            56778999 8 67666543 3333    4999999988 632211 11124578999999888766554     258888


Q ss_pred             ECCCCce--eeeecccccccEEEEEEcCCCCEEEEEec---CCcEEEEEcCCce-ee--eEeecCCCeeecCceeEEEcC
Q 010470          379 DIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGR---DNLHNLFDIRSLE-VC--GSLRATGNRVASNWSRSCISP  450 (510)
Q Consensus       379 d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~i~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~s~  450 (510)
                      ++.++..  ...+.........++.|+|||++|+..+.   ...|.++|+.++. ..  ..+.....   .....+.|+.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~---~~~~s~~~~~  329 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK---GVRYDVQMHG  329 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT---TCCEEEEEET
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC---CceEEEeeee
Confidence            9877642  22222222244678899999998887653   3468888987652 11  22211111   1111123333


Q ss_pred             CCCEEE-EEcCC----CeEEEEeCCCcceeec-ccccCc--CEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          451 DESYVA-AGSAD----GSVYIWSISKADIVRT-LKEHTA--PVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       451 ~~~~l~-~~~~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                       |..|+ ....+    ..|..+++.++..... +-.+..  .+.++.+. .+.++++...+|...+|
T Consensus       330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence             55444 44333    3677778765322222 222332  34555654 23345566667765554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.40  E-value=0.00084  Score=72.08  Aligned_cols=278  Identities=17%  Similarity=0.158  Sum_probs=153.6

Q ss_pred             ccceEEEEEecC------CCEEEEeeC-CCeEEEEeCCCCcceeccc-ccccceeEEEEe--cCCCEEEEEeCCCeEEEE
Q 010470          225 EGGCASILFEYN------SARLISGGQ-DKSIKLWDTNTGSLSSTLY-GCLGSVLDLAIT--HDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       225 ~~~v~~~~~s~~------~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iw  294 (510)
                      .+.|.|+++.|.      +.+++.|.. |++|+|+++++.+.+.... +......++.+.  ....+|.+|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      368999997 9999999998765543221 111233444433  234578888899988666


Q ss_pred             EcC--CCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCcee-EEEEcCC--CCEEE
Q 010470          295 DVN--SGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN-ALAFSMD--GQTIF  367 (510)
Q Consensus       295 d~~--~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~-~i~~~~~--~~~l~  367 (510)
                      .++  +|.....  ..-...++.-..+...+...++++| +....+|--. ++....-.....+. ...|+..  ..-++
T Consensus       633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v  710 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLA  710 (1158)
T ss_dssp             EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred             EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEE
Confidence            554  4543321  1112345544444332233344444 4444455433 33221111112232 2334321  22344


Q ss_pred             EecCCCcEEEEECCCCce--eeeecccccccEEEEEEcCCCCEEEEEecC------------------------------
Q 010470          368 SGHIDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSGRD------------------------------  415 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------------------------------  415 (510)
                      ..+ ++.++|..+.....  +.++...  ..+..++++|..+.++++..+                              
T Consensus       711 ~~~-~~~LrI~~i~~~~~~~~~~ipL~--~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1158)
T 3ei3_A          711 LAN-NSTLTIGTIDEIQKLHIRTVPLY--ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK  787 (1158)
T ss_dssp             EEC-SSCEEEEEECCSSSEEEEEEECS--SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred             EEc-CCceEEEEecccCCeeEEEEeCC--CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence            333 34588887754332  2333333  577888888877755443311                              


Q ss_pred             -------------------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC-CCEEEEEc----------CCCeEE
Q 010470          416 -------------------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD-ESYVAAGS----------ADGSVY  465 (510)
Q Consensus       416 -------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~----------~dg~i~  465 (510)
                                         +.|+++|..+++.+..+....+.....+..+.|..+ ..+|++|+          ..|.|+
T Consensus       788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~  867 (1158)
T 3ei3_A          788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV  867 (1158)
T ss_dssp             CC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEE
T ss_pred             cccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEE
Confidence                               246778888888777776666655443433444433 47888886          358899


Q ss_pred             EEeCCCcceeeccc-ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          466 IWSISKADIVRTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       466 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|++..++...... ...++|++++-- +|..|++.  ..+|++|+
T Consensus       868 vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~  910 (1158)
T 3ei3_A          868 VFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE  910 (1158)
T ss_dssp             EEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred             EEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence            99987544322211 246788888744 35444433  46788774

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.34  E-value=5.7e-06  Score=84.36  Aligned_cols=206  Identities=11%  Similarity=0.017  Sum_probs=125.0

Q ss_pred             cceEEEEEecCCCEEEEe-eCCCeEEEEeCCC----CcceecccccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCC
Q 010470          226 GGCASILFEYNSARLISG-GQDKSIKLWDTNT----GSLSSTLYGCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSG  299 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~  299 (510)
                      ..+.+++|++.+..|+.+ ...+.|..+++.+    ......+.........|++.+.+..|+.+ ...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            456788999876666554 4567899999875    22222222222345678888655544444 56788999998755


Q ss_pred             CeeEeecCCCCceEEEEEecCCCCEEEEEeCC-CcEEEEECCCCeEeeeee--ecCceeEEEEcCCCC-EEEEecCCCcE
Q 010470          300 RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-RTLKVWDLHKGYCVNTII--FHSNCNALAFSMDGQ-TIFSGHIDGNL  375 (510)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~--~~~~i~~i~~~~~~~-~l~~~~~dg~i  375 (510)
                      .....+.........+++.|..+.++++-... +.|.++++... ....+.  .-..++.|+|+|++. ++++-...+.|
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            44333333334567888988545555544333 78888887532 222221  123478899998654 55566667889


Q ss_pred             EEEECCCCceeeeecc--cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec
Q 010470          376 RLWDIQTGKLLSEVAA--HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA  434 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  434 (510)
                      .++|+.... ...+..  ........|++..+ .++++....+.|..++..+++.+..+..
T Consensus       565 ~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          565 SSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             EEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred             EEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence            999986432 222221  11133455666553 4555666678999999888877766643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.33  E-value=0.00096  Score=61.90  Aligned_cols=226  Identities=13%  Similarity=0.044  Sum_probs=126.3

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-eeEeec---CCCCceEEEEEecC---CCCEEEEEeC---C----Cc
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-VRHTLT---GHTDKVCAVDVSKI---SSRHVVSAAY---D----RT  333 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~---~~~~~v~~i~~~~~---~~~~l~s~~~---d----g~  333 (510)
                      .....++|.|+|+ |+++..+|.|++++ .+++ .+..+.   ........++++|.   ++.++++-+.   +    +.
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4567899999997 55566679999997 4454 222211   12356789999983   2444444332   3    57


Q ss_pred             EEEEECCCC--e-----Ee-eeeee--cCceeEEEEcCCCCEEEEecC-------------CCcEEEEECCCCce-----
Q 010470          334 LKVWDLHKG--Y-----CV-NTIIF--HSNCNALAFSMDGQTIFSGHI-------------DGNLRLWDIQTGKL-----  385 (510)
Q Consensus       334 i~iwd~~~~--~-----~~-~~~~~--~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~-----  385 (510)
                      |..|+...+  .     .+ ..+..  ......+.|.|+|.++++.+.             .|.|..++.. ++.     
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np  185 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP  185 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence            888887644  1     11 11221  123678999999987776432             2567777653 321     


Q ss_pred             ---eeeecccccccEEEEEEcC-CCCEEEEEecCC---cEEEEEcCC--------c--------eeeeEeecCCCeeecC
Q 010470          386 ---LSEVAAHSLAAVTSISLSR-SGNIILTSGRDN---LHNLFDIRS--------L--------EVCGSLRATGNRVASN  442 (510)
Q Consensus       386 ---~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~---~i~i~d~~~--------~--------~~~~~~~~~~~~~~~~  442 (510)
                         ...+.... .....++|+| +|.++++-...+   .|.+.....        +        .+...+.    .....
T Consensus       186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~----~~~~a  260 (354)
T 3a9g_A          186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG----SETWA  260 (354)
T ss_dssp             STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT----TCCCC
T ss_pred             CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC----CCCcC
Confidence               11121111 4567899999 666555543322   233322110        0        0011110    00112


Q ss_pred             ceeEEE-------cCCCCEEEEEcCCCeEEEEeCCCc-cee--ec-ccccCcCEEEEEEeCCCCcEEEee
Q 010470          443 WSRSCI-------SPDESYVAAGSADGSVYIWSISKA-DIV--RT-LKEHTAPVLSCSWSGLGKPLASAD  501 (510)
Q Consensus       443 ~~~~~~-------s~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~-~~~~~~~v~~~~~~~~~~~l~s~~  501 (510)
                      ...++|       ..+|.++++....+.|...++... ...  .. +.+....+.++++.|||.+.++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            344666       357888887777888999888753 221  12 222245789999999997666654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.32  E-value=0.0013  Score=60.44  Aligned_cols=231  Identities=13%  Similarity=0.097  Sum_probs=125.0

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc---ccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY---GCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV  301 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  301 (510)
                      ...+.+|.|++ +. ++.++..|.|.. ..+.|+.-..+.   .+.+.+..+.+.+++..++++ .+|.|.. ..+.|+.
T Consensus        79 ~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence            44688999986 44 444455665544 333343322221   233457788887777655544 4565433 2233432


Q ss_pred             e-EeecCCCCceEEEEEecCCCCEEEEEeCCCcEEE-EEC--CCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE
Q 010470          302 R-HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV-WDL--HKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL  377 (510)
Q Consensus       302 ~-~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~i-wd~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  377 (510)
                      - .....+...+..+.+.+ ++.+++.+. +|.+.. +|-  .+-+.+. ......+..+.+.+++..++++ .+|.+++
T Consensus       154 W~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~  229 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIV-NGGKIAF  229 (327)
T ss_dssp             EEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEE-TTTEEEE
T ss_pred             CEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEe-CCceEEE
Confidence            2 22234556788999988 566665554 555544 332  1112221 1223457888899988766554 5677777


Q ss_pred             EECCCCceeeeeccc---ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE
Q 010470          378 WDIQTGKLLSEVAAH---SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       378 ~d~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      .+...++.-..+...   ....+.++.+.+++.+++++. ++.+ ++....++.-..+.... .....+..+.+.+++. 
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~-~~~~~~~~v~~~~~~~-  305 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK-KVPSNFYKILFFSPDQ-  305 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT-TSSSCCCEEEEEETTE-
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC-CCCCCeEEEEEECCCc-
Confidence            643334433333221   113588999998877666654 6666 34444444333332211 1112334477765555 


Q ss_pred             EEEEcCCCeEEEEe
Q 010470          455 VAAGSADGSVYIWS  468 (510)
Q Consensus       455 l~~~~~dg~i~iwd  468 (510)
                      +++++.+|.|.-++
T Consensus       306 ~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          306 GFILGQKGILLRYV  319 (327)
T ss_dssp             EEEECSTTEEEEEC
T ss_pred             eEEEcCCceEEEEc
Confidence            55566688877665

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.31  E-value=0.004  Score=64.51  Aligned_cols=267  Identities=13%  Similarity=0.129  Sum_probs=149.7

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  304 (510)
                      ...|.++....+| .|..|+.+| +..||..+.............|.++.. .++ .|..++.+ .+..||..+++....
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~  136 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF  136 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence            3568898888776 666777665 789998876543211112335666654 355 46666665 688899876654322


Q ss_pred             ec----CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee------cCceeEEEEcCCCCEEEEecCCCc
Q 010470          305 LT----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF------HSNCNALAFSMDGQTIFSGHIDGN  374 (510)
Q Consensus       305 ~~----~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~dg~  374 (510)
                      ..    .....|.++...+ ++. +..++.+ .+..+|..++........      ...|.++...+++..|.+|+. +-
T Consensus       137 ~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G  212 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTK-DNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY  212 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECT-TCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred             ccCCCCcCCCeEEEEEEcC-CCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence            11    1234677777655 444 4455544 588899877654322111      113778887777776666764 46


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC---CeeecCceeEEEcCC
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG---NRVASNWSRSCISPD  451 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~  451 (510)
                      +..||..+++... +.......|.++...++|.+.+.. . +-+.+++..+...........   ......+.++....+
T Consensus       213 l~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWigT-~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~  289 (758)
T 3ott_A          213 LFQYFPSTGQIKQ-TEAFHNNSIKSLALDGNGDLLAGT-D-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE  289 (758)
T ss_dssp             EEEEETTTTEEEE-EEEEEEEEEEEEEECTTCCEEEEE-T-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT
T ss_pred             CeEEcCCCCeEEe-ccCCCCCeEEEEEEcCCCCEEEEe-C-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC
Confidence            8889987765432 221112568889888888766654 4 457788877654322211111   111223445666777


Q ss_pred             CCEEEEEcCCCeEEEEeCCCcceeecc---c--ccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          452 ESYVAAGSADGSVYIWSISKADIVRTL---K--EHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~~~~~~~~---~--~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                      |.+ ..|+..| +.++.....-.....   .  .....|.++.-..+|.+.+ |+.+|.+
T Consensus       290 g~l-WiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~  346 (758)
T 3ott_A          290 HNI-WLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLI  346 (758)
T ss_dssp             CCE-EEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEE
T ss_pred             CCE-EEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCcce
Confidence            764 4455567 555543221111111   0  1234588888777776443 3445543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.29  E-value=0.00014  Score=66.02  Aligned_cols=225  Identities=10%  Similarity=0.119  Sum_probs=117.0

Q ss_pred             CCEEEEeeCC----CeEEEEeCCCCcceec--ccccccceeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCCeeEe-
Q 010470          237 SARLISGGQD----KSIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNRSVIAASSS-----NNLYVWDVNSGRVRHT-  304 (510)
Q Consensus       237 ~~~l~s~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~-  304 (510)
                      +.+++.|+.+    ..+.+||+.+..-...  +...... .+++ .-++..++.|+.+     ..+.+||+.+.+-... 
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455556543    3578888876653221  1111111 1222 2266677777644     3688999887653322 


Q ss_pred             -ecCCCCceEEEEEecCCCCEEEEEeCCC-----cEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCC----
Q 010470          305 -LTGHTDKVCAVDVSKISSRHVVSAAYDR-----TLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHID----  372 (510)
Q Consensus       305 -~~~~~~~v~~i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d----  372 (510)
                       +...... .++...  ++.+++.|+.++     .+.+||+.++.....-..+..  ..+++. .++..++.|+.+    
T Consensus        94 ~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           94 NMRDRRST-LGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCSSCCBS-CEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred             CCCccccc-eEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence             1111111 122222  567777777553     578899987765443222221  122222 266777776542    


Q ss_pred             ---CcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470          373 ---GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRVASNW  443 (510)
Q Consensus       373 ---g~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~  443 (510)
                         ..+.+||+.+.+-...-.... ......+.+  ++.+++.|+.+     +.+.+||+.+..-...-........  .
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~--~  245 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN--A  245 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS--C
T ss_pred             ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc--C
Confidence               358899987764332211111 012222222  56777777754     3688999987654332211111111  1


Q ss_pred             eeEEEcCCCCEEEEEcCCC-----eEEEEeCCCcc
Q 010470          444 SRSCISPDESYVAAGSADG-----SVYIWSISKAD  473 (510)
Q Consensus       444 ~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~  473 (510)
                        .+...++.+++.|+.++     .+.+||+.+.+
T Consensus       246 --~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          246 --GVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             --EEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             --eEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence              22334677888887653     48999987654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.27  E-value=0.00037  Score=63.43  Aligned_cols=222  Identities=11%  Similarity=0.095  Sum_probs=117.2

Q ss_pred             EEEEeeC--CCeEEEEeCCCCccee--cccccccceeEEEEecCCCEEEEEeCC----CeEEEEEcCCCCeeEe--ecCC
Q 010470          239 RLISGGQ--DKSIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASSS----NNLYVWDVNSGRVRHT--LTGH  308 (510)
Q Consensus       239 ~l~s~~~--dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~--~~~~  308 (510)
                      +++.||.  ...+.+||..+++-..  .+.........+  ..++..++.|+.+    ..+.+||+.+++-...  +...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4555554  3568899988765322  121111111222  2366677777754    5788999887753322  2211


Q ss_pred             CCceEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecC---------
Q 010470          309 TDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHI---------  371 (510)
Q Consensus       309 ~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~---------  371 (510)
                      ......+.+   ++.+++.|+.+      ..+.+||+.++.....-..+..  -.+++. .++.+++.|+.         
T Consensus        92 r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           92 RDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             CBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred             ccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence            111122222   56777777765      4689999988765443222211  122222 26677776653         


Q ss_pred             CCcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470          372 DGNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRVASNWSR  445 (510)
Q Consensus       372 dg~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  445 (510)
                      -..+.+||+.+..-...-..... .....+.+  ++.+++.|+.+     ..+.+||+.+..-...-..+....  ..  
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~--  241 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV--TV--  241 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS--CC--
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc--ce--
Confidence            34588999987643222111110 11222222  56677777654     468899998754332211111111  11  


Q ss_pred             EEEcCCCCEEEEEcCC-----CeEEEEeCCCc
Q 010470          446 SCISPDESYVAAGSAD-----GSVYIWSISKA  472 (510)
Q Consensus       446 ~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  472 (510)
                      .+..-++.+++.|+.+     ..+.+||+.+.
T Consensus       242 ~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          242 KCAAVGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             eEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            1222367788888754     46889998765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.18  E-value=0.0013  Score=60.93  Aligned_cols=238  Identities=13%  Similarity=0.070  Sum_probs=126.7

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-------cCCCCceEEEEEecC---CCCEEEEEeC-------
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-------TGHTDKVCAVDVSKI---SSRHVVSAAY-------  330 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~~~~---~~~~l~s~~~-------  330 (510)
                      .....|+|.|+|+.++++...|.|++++.. +.....+       .........++++|.   ++.+.++-+.       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            356889999999845566678999999843 3321111       112345688999984   3444444332       


Q ss_pred             CCcEEEEECCCC--e--Eeeee----e----ecCceeEEEEcCCCCEEEEecC-------------CCcEEEEECCCCc-
Q 010470          331 DRTLKVWDLHKG--Y--CVNTI----I----FHSNCNALAFSMDGQTIFSGHI-------------DGNLRLWDIQTGK-  384 (510)
Q Consensus       331 dg~i~iwd~~~~--~--~~~~~----~----~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~-  384 (510)
                      ...|..|++..+  .  ....+    .    ..+....+.|.|||.++++.+.             .|.|..+|....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            235777766533  1  11111    1    1122568999999966555432             2568778764320 


Q ss_pred             -----------eeeeecccccccEEEEEEcC-CCCEEEEEec-CCcEEEEEcCCceeee--------E-----e------
Q 010470          385 -----------LLSEVAAHSLAAVTSISLSR-SGNIILTSGR-DNLHNLFDIRSLEVCG--------S-----L------  432 (510)
Q Consensus       385 -----------~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~--------~-----~------  432 (510)
                                 ....+.... .....++|+| +|.++++-.. ++.=.|.-+..+....        .     +      
T Consensus       177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                       111222222 5688999999 5554444322 1111222221111100        0     0      


Q ss_pred             --ecCCCee-----ecCceeEEEc-------CCCCEEEEEcCCCeEEEEeCCCcceeec---ccccCcCEEEEEEeCCCC
Q 010470          433 --RATGNRV-----ASNWSRSCIS-------PDESYVAAGSADGSVYIWSISKADIVRT---LKEHTAPVLSCSWSGLGK  495 (510)
Q Consensus       433 --~~~~~~~-----~~~~~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~  495 (510)
                        .....+.     ......+.|.       .+|.++++....+.|...++..++....   +......+.++++.|||.
T Consensus       256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY  335 (353)
T ss_dssp             SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred             CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence              0000000     0122335554       2577888777788888888876543322   222335789999999998


Q ss_pred             cEEEee-CCCeEE
Q 010470          496 PLASAD-KNGVVC  507 (510)
Q Consensus       496 ~l~s~~-~dg~i~  507 (510)
                      ++++.. .+|.|.
T Consensus       336 lyv~td~~~g~I~  348 (353)
T 2g8s_A          336 LYVLTDESSGELL  348 (353)
T ss_dssp             EEEEECSTTEEEE
T ss_pred             EEEEEeCCCCEEE
Confidence            666533 566654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.17  E-value=0.00046  Score=62.86  Aligned_cols=226  Identities=9%  Similarity=0.040  Sum_probs=117.4

Q ss_pred             cCCCEEEEeeCC----CeEEEEeCCCCcceec--ccccccceeEEEEecCCCEEEEEeC----C-----CeEEEEEcCCC
Q 010470          235 YNSARLISGGQD----KSIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNRSVIAASS----S-----NNLYVWDVNSG  299 (510)
Q Consensus       235 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----~~i~iwd~~~~  299 (510)
                      -++.+++.||.+    ..+.+||..+++-...  +...... .+++ ..++..++.|+.    +     +.+.+||+.+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            355677777642    3688999877653221  1111111 1222 226666666665    2     46888998776


Q ss_pred             CeeEe--ecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEec
Q 010470          300 RVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGH  370 (510)
Q Consensus       300 ~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~  370 (510)
                      +-...  +.........+.+   ++.+++.|+.+     ..+.+||+.+++....-..+..  -.+++.. ++.+++.|+
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  176 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG  176 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             eEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence            53222  1111111122222   56677777643     4688999987765433222211  1222222 667777776


Q ss_pred             CC-----CcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCee
Q 010470          371 ID-----GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       371 ~d-----g~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~  439 (510)
                      .+     ..+.+||+.+.+-...-.... ......+.+  ++.+++.|+.+     ..+.+||+.+..-...-..+....
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  254 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS  254 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence            54     458999987764322111111 012222333  56777777664     568999998765432211111111


Q ss_pred             ecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCc
Q 010470          440 ASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKA  472 (510)
Q Consensus       440 ~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  472 (510)
                        ..  .+...++.+++.|+.+     ..+.+||+.+.
T Consensus       255 --~~--~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          255 --AL--GITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             --SC--EEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             --ce--EEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence              11  1222367777777754     35788887764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.14  E-value=0.0002  Score=64.95  Aligned_cols=203  Identities=15%  Similarity=0.112  Sum_probs=104.6

Q ss_pred             CeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCe---EeeeeeecC--ceeE
Q 010470          289 NNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGY---CVNTIIFHS--NCNA  356 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~---~~~~~~~~~--~i~~  356 (510)
                      ..+.+||+.+++-...  +...... .++.. . ++.+++.|+.+     ..+.+||+.++.   ....-..+.  .-.+
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~  107 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRY-VASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG  107 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS-CEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhcc-ccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence            3688888877653221  1111111 12222 2 56777777755     468999998765   332222121  1122


Q ss_pred             EEEcCCCCEEEEecCC-----CcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCC
Q 010470          357 LAFSMDGQTIFSGHID-----GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRS  425 (510)
Q Consensus       357 i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~  425 (510)
                      ++. .++..++.|+.+     ..+.+||+.+.+-...-.... ......+.+  ++.+++.|+.+     ..+.+||+.+
T Consensus       108 ~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~  184 (301)
T 2vpj_A          108 ATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT  184 (301)
T ss_dssp             EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             EEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence            222 267777777643     358899987765332211111 012222222  66777777654     4688999887


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcce--eecccccCcCEEEEEEeCCCCcEE
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKADI--VRTLKEHTAPVLSCSWSGLGKPLA  498 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~  498 (510)
                      ..-...-..+....  ..  .+...++.+++.|+.+     ..+.+||+.+.+-  +..+.........+.+  ++..++
T Consensus       185 ~~W~~~~~~p~~r~--~~--~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v  258 (301)
T 2vpj_A          185 GHWTNVTPMATKRS--GA--GVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYA  258 (301)
T ss_dssp             TEEEEECCCSSCCB--SC--EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred             CcEEeCCCCCcccc--cc--eEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEE
Confidence            65433211111111  11  2233367777887764     4689999877542  2222222222223333  666777


Q ss_pred             EeeCC
Q 010470          499 SADKN  503 (510)
Q Consensus       499 s~~~d  503 (510)
                      .||.+
T Consensus       259 ~GG~~  263 (301)
T 2vpj_A          259 IAGYD  263 (301)
T ss_dssp             ECCBC
T ss_pred             EcCcC
Confidence            77765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.13  E-value=0.00087  Score=61.61  Aligned_cols=191  Identities=11%  Similarity=0.144  Sum_probs=108.6

Q ss_pred             eeEEEEecCCCEEEEE------------eCCCeEEEEEcCC--CCee-EeecC-----CCCceEEEEEecC-CC-CEEEE
Q 010470          270 VLDLAITHDNRSVIAA------------SSSNNLYVWDVNS--GRVR-HTLTG-----HTDKVCAVDVSKI-SS-RHVVS  327 (510)
Q Consensus       270 v~~~~~~~~~~~l~~~------------~~d~~i~iwd~~~--~~~~-~~~~~-----~~~~v~~i~~~~~-~~-~~l~s  327 (510)
                      .-++.+.|+|..++++            ..+|.|.++|+.+  ++.. ..+.+     ..-....+.+.++ ++ .+|+.
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3455566665444333            2688999999874  2321 12222     2246777887663 23 23444


Q ss_pred             E-eC--CCcEEEEECCC--CeE--eeeeeec--CceeEEEEcCCCCEEEEec-----------------CCCcEEEEECC
Q 010470          328 A-AY--DRTLKVWDLHK--GYC--VNTIIFH--SNCNALAFSMDGQTIFSGH-----------------IDGNLRLWDIQ  381 (510)
Q Consensus       328 ~-~~--dg~i~iwd~~~--~~~--~~~~~~~--~~i~~i~~~~~~~~l~~~~-----------------~dg~i~i~d~~  381 (510)
                      + ..  +.+|.+|++..  +..  +..+...  ..++.+.+.++|.+.++..                 ..|.|+.||..
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            4 32  45677776543  322  2222221  3489999999998777654                 13567777753


Q ss_pred             CCceeeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCC-cee--eeEeecCCCeeecCceeEEEcC-CCCEEE
Q 010470          382 TGKLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRS-LEV--CGSLRATGNRVASNWSRSCISP-DESYVA  456 (510)
Q Consensus       382 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~s~-~~~~l~  456 (510)
                        + +..+... ....+.++|+||++.|+++. ..+.|..|++.. +..  ...+.. .    .....+++++ +|++.+
T Consensus       212 --~-~~~~~~~-l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-~----g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          212 --D-VRVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-D----TLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             --C-CEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-S----SEEEEEEECTTTCCEEE
T ss_pred             --e-EEEeecC-CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-C----CCCceEEEeCCCCcEEE
Confidence              2 2222222 25789999999998777665 568999999863 322  222321 1    2223478999 599877


Q ss_pred             EEcCC-CeEEEEeC
Q 010470          457 AGSAD-GSVYIWSI  469 (510)
Q Consensus       457 ~~~~d-g~i~iwd~  469 (510)
                      ++..+ +.|..|+.
T Consensus       283 a~~~~g~~v~~~~P  296 (355)
T 3sre_A          283 GCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEESCHHHHHSCCT
T ss_pred             EecCCceEEEEECC
Confidence            66544 34444443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.13  E-value=0.0032  Score=58.36  Aligned_cols=235  Identities=11%  Similarity=0.068  Sum_probs=126.6

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce---ecc----cccccceeEEEEecC---CCEEEEEe-C------
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS---STL----YGCLGSVLDLAITHD---NRSVIAAS-S------  287 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~----~~~~~~v~~~~~~~~---~~~l~~~~-~------  287 (510)
                      -.....|+|.|+|+.|+++...|.|++++.. +...   ..+    .........++|+|+   +..|+++. .      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3457899999999834455567999999854 3321   111    122346789999996   55555543 2      


Q ss_pred             -CCeEEEEEcCCC--C--eeE-eecC------CCCceEEEEEecCCCCEEEEEeC-------------CCcEEEEECCCC
Q 010470          288 -SNNLYVWDVNSG--R--VRH-TLTG------HTDKVCAVDVSKISSRHVVSAAY-------------DRTLKVWDLHKG  342 (510)
Q Consensus       288 -d~~i~iwd~~~~--~--~~~-~~~~------~~~~v~~i~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~  342 (510)
                       ...|..|++..+  .  ... .+..      .......+.|.| ++.++++.+.             .|.|.-+|....
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence             235777776533  1  111 1111      112235799999 6665555433             246777776532


Q ss_pred             e------------Eeeee-eecCceeEEEEcC-CCCEEEEecC-CCcEEEEECCCCc-----------------------
Q 010470          343 Y------------CVNTI-IFHSNCNALAFSM-DGQTIFSGHI-DGNLRLWDIQTGK-----------------------  384 (510)
Q Consensus       343 ~------------~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~-dg~i~i~d~~~~~-----------------------  384 (510)
                      -            ....+ .....+..++|+| +|.++++-.. ++.=.|.-+..+.                       
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence            0            11122 2335588999999 5655544221 1111222111111                       


Q ss_pred             --------eeeeecccccccEEEEEEcC-------CCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc
Q 010470          385 --------LLSEVAAHSLAAVTSISLSR-------SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS  449 (510)
Q Consensus       385 --------~~~~~~~~~~~~i~~i~~~~-------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  449 (510)
                              ++..+.. + ..+..+.|..       +|.++++....+.|..+++..+.......... .....+..+++.
T Consensus       255 ~~~~~~~~P~~~~~~-~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~  331 (353)
T 2g8s_A          255 EIVAGTEQPVFYWKD-S-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT-DRGQRIRDVRTG  331 (353)
T ss_dssp             SSCTTSCCCSEEESS-C-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG-GGCCCEEEEEEC
T ss_pred             CCCCCccCCeEEeCC-C-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc-CCCCceeEEEEC
Confidence                    1111111 1 4577788864       46777777777888888887654432221110 111234558899


Q ss_pred             CCCCEEEEEc-CCCeE
Q 010470          450 PDESYVAAGS-ADGSV  464 (510)
Q Consensus       450 ~~~~~l~~~~-~dg~i  464 (510)
                      |||.++++.. .+|.|
T Consensus       332 pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          332 PDGYLYVLTDESSGEL  347 (353)
T ss_dssp             TTSCEEEEECSTTEEE
T ss_pred             CCCcEEEEEeCCCCEE
Confidence            9998666533 45544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=98.09  E-value=0.0017  Score=61.96  Aligned_cols=259  Identities=13%  Similarity=0.128  Sum_probs=150.9

Q ss_pred             EEEEeeCCCeEEEEeCCCCcceeccccc-------------------------ccce--eEEEEe---cCCCEEEEEe-C
Q 010470          239 RLISGGQDKSIKLWDTNTGSLSSTLYGC-------------------------LGSV--LDLAIT---HDNRSVIAAS-S  287 (510)
Q Consensus       239 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~v--~~~~~~---~~~~~l~~~~-~  287 (510)
                      .|.|||..|.|+|+-+.+++.+..+.-.                         .+..  ..+++.   -||++|+.-. .
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            3678888999999999888776543211                         0111  123332   2677888877 5


Q ss_pred             CCeEEEEEcCCCCeeEeecC-CCCceEEEEEec-CCCCEEEEEeC-------CCcE------------EEEECCCCeEee
Q 010470          288 SNNLYVWDVNSGRVRHTLTG-HTDKVCAVDVSK-ISSRHVVSAAY-------DRTL------------KVWDLHKGYCVN  346 (510)
Q Consensus       288 d~~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~-~~~~~l~s~~~-------dg~i------------~iwd~~~~~~~~  346 (510)
                      +..|...++...++-..+.- ....+.++.+.. .+..+++.++.       ||..            ...|..+.+...
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            66888888888776555542 345677777762 26667777654       2221            122344444444


Q ss_pred             eeeecCceeEEEEcCCCCEEEEecCCC---------------cEEEEE-------------------------CCC----
Q 010470          347 TIIFHSNCNALAFSMDGQTIFSGHIDG---------------NLRLWD-------------------------IQT----  382 (510)
Q Consensus       347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg---------------~i~i~d-------------------------~~~----  382 (510)
                      .+....+...+...++|.+.++.+.+.               .+.+++                         .+.    
T Consensus       232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~  311 (638)
T 3sbq_A          232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK  311 (638)
T ss_dssp             EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred             EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence            444444555566677777776654321               244444                         332    


Q ss_pred             Ccee-eeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceee---------eEeecCCCeeecCceeEEEcCC
Q 010470          383 GKLL-SEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVC---------GSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       383 ~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      +..+ ..+...  ..+..+.++|||+++++++ -+.++.++|..+....         ..+... ..........+|+++
T Consensus       312 ~~~~~~~iP~p--ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-~e~GlGPlHt~Fd~~  388 (638)
T 3sbq_A          312 DSKFTRYVPVP--KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-PELGLGPLHTTFDGR  388 (638)
T ss_dssp             CCSSEEEEEES--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-CBCCSCEEEEEECSS
T ss_pred             CCceEEEEeCC--CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-ccCCCcccEEEECCC
Confidence            1111 111111  4566789999999988766 5679999999852210         001111 112223344789999


Q ss_pred             CCEEEEEcCCCeEEEEeCCCc----------ceeecccccCcCEEEEEE------eCCCCcEEEee
Q 010470          452 ESYVAAGSADGSVYIWSISKA----------DIVRTLKEHTAPVLSCSW------SGLGKPLASAD  501 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~------~~~~~~l~s~~  501 (510)
                      |....+-.-|..|.-|++...          ..+..+.-|-.+ -.+.-      .|+|++|++..
T Consensus       389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred             CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence            966667778999999998753          334444444432 23322      57888888864

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.07  E-value=0.00096  Score=60.91  Aligned_cols=223  Identities=9%  Similarity=0.045  Sum_probs=115.7

Q ss_pred             EEEEeeCCCeEEEEeCCCCccee-cccccccceeEEEEecCCCEEEEEeC-----C------CeEEEEEcCCCCeeEeec
Q 010470          239 RLISGGQDKSIKLWDTNTGSLSS-TLYGCLGSVLDLAITHDNRSVIAASS-----S------NNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       239 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-----d------~~i~iwd~~~~~~~~~~~  306 (510)
                      +++.|+  ..+.+||..+++-.. .+..........+...++..++.|+.     .      ..+.+||+.+++-.. +.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CC
Confidence            344555  578999998776432 11111122233334457788888873     1      137788887765322 11


Q ss_pred             CCCCce--EEEEEecCCCCEEEEEeCC--------CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecC-C-
Q 010470          307 GHTDKV--CAVDVSKISSRHVVSAAYD--------RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHI-D-  372 (510)
Q Consensus       307 ~~~~~v--~~i~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~-d-  372 (510)
                      ....+-  .++...  ++.+++.|+.+        ..+.+||+.+++....-..+.+  -.+++. .++..++.|+. + 
T Consensus        84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~  160 (315)
T 4asc_A           84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSD  160 (315)
T ss_dssp             CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTT
T ss_pred             CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCC
Confidence            111111  122222  56677777742        4689999988764433222211  122222 36677777765 2 


Q ss_pred             ----CcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEecCC-----cEEEEEcCCceeeeEeecCCCeeecC
Q 010470          373 ----GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDN-----LHNLFDIRSLEVCGSLRATGNRVASN  442 (510)
Q Consensus       373 ----g~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~  442 (510)
                          ..+.+||+.+.+-...-..+. .....++.+  ++.+++.|+.++     .+.+||+.+..-...-..+.....  
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--  236 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS--  236 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS--
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc--
Confidence                468999987764322111111 011222222  567777777654     588899887644332211111111  


Q ss_pred             ceeEEEcCCCCEEEEEcCCC--------------eEEEEeCCCcc
Q 010470          443 WSRSCISPDESYVAAGSADG--------------SVYIWSISKAD  473 (510)
Q Consensus       443 ~~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~  473 (510)
                      .  .+...++.+++.|+.++              .|.+||+.+.+
T Consensus       237 ~--~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          237 L--SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             C--EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             e--eEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            1  22233677777777532              47788877653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=98.07  E-value=8.1e-05  Score=67.74  Aligned_cols=194  Identities=12%  Similarity=0.120  Sum_probs=110.8

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCeeEeecCC-CCceEEEEEe--cCCCCEEEEE-eCCCcEEEEECCCCeEeeeeeecCce-
Q 010470          280 RSVIAASSSNNLYVWDVNSGRVRHTLTGH-TDKVCAVDVS--KISSRHVVSA-AYDRTLKVWDLHKGYCVNTIIFHSNC-  354 (510)
Q Consensus       280 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~--~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i-  354 (510)
                      ..+++++.||.|+-+|..+|+....+... ..++....-.  +.++..++.. +.||.|..+|..+|.....+..+.-+ 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46899999999999999999999988754 1222221100  1122333343 57999999999988665544433211 


Q ss_pred             -eEEEEc-----------CCCCEEEEecCCCcEEEEECCCCceeeeeccccccc------EEEEEEc-----CCCCEEEE
Q 010470          355 -NALAFS-----------MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA------VTSISLS-----RSGNIILT  411 (510)
Q Consensus       355 -~~i~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------i~~i~~~-----~~~~~l~~  411 (510)
                       ..+...           ..+..+++|+.+|.+...|+++|+.+..+.......      ..|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence             111110           145678899999999999999999999887543111      0111111     12456777


Q ss_pred             EecCCcEEEEEcCCceeeeEeecC---CCeeecCc-eeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470          412 SGRDNLHNLFDIRSLEVCGSLRAT---GNRVASNW-SRSCISPDESYVAAGSADGSVYIWSISKADIVR  476 (510)
Q Consensus       412 ~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  476 (510)
                      +..+..+.+.+ ++++ ...+...   .......+ ....++.|+.++ +++.||.|.-+|..+|..+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCI-APFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCE-EEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEE-EECCCCEEEEEECCCCcEEE
Confidence            77666666666 3443 2111100   00000000 000112346664 46778888888888887765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.06  E-value=0.00039  Score=63.14  Aligned_cols=204  Identities=14%  Similarity=0.177  Sum_probs=103.3

Q ss_pred             CeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCeEeeeeeecCc--eeEEEE
Q 010470          289 NNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD-----RTLKVWDLHKGYCVNTIIFHSN--CNALAF  359 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--i~~i~~  359 (510)
                      ..+.+||+.+.+-...  +...... .++...  ++.+++.|+.+     ..+.+||+.+.+....-..+..  -.+++.
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCR-AGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBS-CEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCccccc-ceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence            3577888876653221  1111111 122222  56777777754     3588999988764433222211  122222


Q ss_pred             cCCCCEEEEecCCC-----cEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEecC-------CcEEEEEcCCc
Q 010470          360 SMDGQTIFSGHIDG-----NLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGRD-------NLHNLFDIRSL  426 (510)
Q Consensus       360 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d-------~~i~i~d~~~~  426 (510)
                       .++..++.|+.++     .+.+||+.+.+-...-..... .....+.+  ++.+++.|+.+       ..+.+||+.+.
T Consensus       107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence             2667777776543     478899877653322111110 11222222  56667776643       35889998876


Q ss_pred             eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcc--eeecccccCcCEEEEEEeCCCCcEEE
Q 010470          427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKAD--IVRTLKEHTAPVLSCSWSGLGKPLAS  499 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s  499 (510)
                      .-...-..+....  ..  .+...++.+++.|+.+     ..+.+||+.+.+  .+..+.........+.+  ++..++.
T Consensus       184 ~W~~~~~~p~~r~--~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~  257 (302)
T 2xn4_A          184 EWTYIAEMSTRRS--GA--GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVV  257 (302)
T ss_dssp             EEEEECCCSSCCB--SC--EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             cEEECCCCccccc--cc--cEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEE
Confidence            5433211111111  11  2223367788888764     368999987653  22222211111122222  6677777


Q ss_pred             eeCCC
Q 010470          500 ADKNG  504 (510)
Q Consensus       500 ~~~dg  504 (510)
                      ||.++
T Consensus       258 GG~~~  262 (302)
T 2xn4_A          258 GGDDG  262 (302)
T ss_dssp             CCBCS
T ss_pred             CCcCC
Confidence            77654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.03  E-value=0.0082  Score=55.13  Aligned_cols=199  Identities=14%  Similarity=0.164  Sum_probs=119.9

Q ss_pred             ccccccceEEEEEecCCCEEEEee------------CCCeEEEEeCCCC--cce-ecccc-----cccceeEEEEec--C
Q 010470          221 INAHEGGCASILFEYNSARLISGG------------QDKSIKLWDTNTG--SLS-STLYG-----CLGSVLDLAITH--D  278 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~------------~dg~i~iwd~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~  278 (510)
                      +.+-....-.+.+.|+|..+++++            .+|.|.++|+.+.  +.. -.+.+     .......+.+.+  +
T Consensus        45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d  124 (355)
T 3sre_A           45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  124 (355)
T ss_dssp             CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred             eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence            444334566777888875555542            6899999998742  221 11112     234667788766  4


Q ss_pred             CC-EEEEEe-C--CCeEEEEEcCCCC----eeEeecCC-CCceEEEEEecCCCCEEEEEe-----------------CCC
Q 010470          279 NR-SVIAAS-S--SNNLYVWDVNSGR----VRHTLTGH-TDKVCAVDVSKISSRHVVSAA-----------------YDR  332 (510)
Q Consensus       279 ~~-~l~~~~-~--d~~i~iwd~~~~~----~~~~~~~~-~~~v~~i~~~~~~~~~l~s~~-----------------~dg  332 (510)
                      +. +|+++. .  +..|.+|++..+.    .+..+.+. -...+.+.+.+ ++.+.++..                 ..|
T Consensus       125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred             CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCcc
Confidence            54 455553 2  4678888876542    23333332 24578888888 666666543                 125


Q ss_pred             cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCC-Cce--eeeecccccccEEEEEEcC-CCC
Q 010470          333 TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQT-GKL--LSEVAAHSLAAVTSISLSR-SGN  407 (510)
Q Consensus       333 ~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~-~~~--~~~~~~~~~~~i~~i~~~~-~~~  407 (510)
                      .|..+|.  +........-...+.++|+||++.++++ +..+.|..|++.. +..  ...+..  .+.+..+++++ +|+
T Consensus       204 ~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          204 FVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD  279 (355)
T ss_dssp             EEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred             EEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence            5666665  3332223333568999999999877755 4578899999863 322  223322  26788999999 599


Q ss_pred             EEEEEecC-CcEEEEEcC
Q 010470          408 IILTSGRD-NLHNLFDIR  424 (510)
Q Consensus       408 ~l~~~~~d-~~i~i~d~~  424 (510)
                      +.+++..+ +.|..|+..
T Consensus       280 lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          280 LWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEEESCHHHHHSCCTT
T ss_pred             EEEEecCCceEEEEECCC
Confidence            88876544 345555544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.02  E-value=0.0081  Score=54.91  Aligned_cols=234  Identities=12%  Similarity=0.079  Sum_probs=127.3

Q ss_pred             eeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecc----cccccceeEEEEecC---CCEEEEE-e-
Q 010470          218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTL----YGCLGSVLDLAITHD---NRSVIAA-S-  286 (510)
Q Consensus       218 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~-~-  286 (510)
                      ...+...-.....|+|.|+|.++++--..|.|++++..++..  +..+    .........|+++|+   +..|++. + 
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            334444455688999999998777776689999998765543  2111    233567889999995   4455543 2 


Q ss_pred             -CCCeEEEEEcCCC-----C-----ee-Eeec-CCCCceEEEEEecCCCCEEEEEeC-------------CCcEEEEECC
Q 010470          287 -SSNNLYVWDVNSG-----R-----VR-HTLT-GHTDKVCAVDVSKISSRHVVSAAY-------------DRTLKVWDLH  340 (510)
Q Consensus       287 -~d~~i~iwd~~~~-----~-----~~-~~~~-~~~~~v~~i~~~~~~~~~l~s~~~-------------dg~i~iwd~~  340 (510)
                       .++.|.-|.+..+     .     .+ ..+. ........+.|.| ++.++++.+.             .|.|.-++..
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence             4556777766542     1     11 1122 1122345688998 6777666542             3566666654


Q ss_pred             CCe-------Eeeee-eecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCCc------------------eeeeecccc
Q 010470          341 KGY-------CVNTI-IFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGK------------------LLSEVAAHS  393 (510)
Q Consensus       341 ~~~-------~~~~~-~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------------~~~~~~~~~  393 (510)
                      ..-       ....+ ..+.++..++|+|+|.++++-. .++.=.|.-+..+.                  ++..+..++
T Consensus       183 G~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~  262 (347)
T 3das_A          183 GEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE  262 (347)
T ss_dssp             SSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred             CCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence            220       00112 2345678999999888766532 22222222222221                  112222221


Q ss_pred             cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee----eEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470          394 LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC----GSLRATGNRVASNWSRSCISPDESYVAAG  458 (510)
Q Consensus       394 ~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  458 (510)
                       .....+.|. +|..++..-..+.|..+.+.....+    ..+...    ...+..+.+.|||.++++.
T Consensus       263 -~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~----~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          263 -ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE----YGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             -CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT----SSCEEEEEEEETTEEEEEE
T ss_pred             -CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC----CCCccEEEECCCCcEEEEE
Confidence             356677776 3566666656666766666543321    111111    1223447778887765543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.01  E-value=0.021  Score=59.15  Aligned_cols=261  Identities=10%  Similarity=0.085  Sum_probs=151.2

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecc-cccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL-YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      ...|.++.-+.+| +|..|+.+| +..||-...+..... ......|.++....+| .|.+++.+| +..||..+.+...
T Consensus        21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~   96 (758)
T 3ott_A           21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ   96 (758)
T ss_dssp             CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred             cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence            4579999998887 566667777 666774322111111 1224568888877766 466666655 7899987764332


Q ss_pred             eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-----ecCceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          304 TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-----FHSNCNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                      ........|.++.. . + ..|..++.+ .+..+|..++.......     ....+.++....+|.+.+ |+.+ -|..|
T Consensus        97 ~~~~~~~~i~~i~~-~-~-g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~  170 (758)
T 3ott_A           97 PETDFPTDVRTMAL-Q-G-DTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRY  170 (758)
T ss_dssp             CSCCCCSCEEEEEE-E-T-TEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEE
T ss_pred             cccCCCceEEEEEe-c-C-CcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhC
Confidence            11112335766654 2 3 456666655 68899987665432211     123477888877777555 5544 48888


Q ss_pred             ECCCCceeeeeccc-----ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC
Q 010470          379 DIQTGKLLSEVAAH-----SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES  453 (510)
Q Consensus       379 d~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  453 (510)
                      |..+++... +...     ....|.++...+++..|..|+. +-+..||..++.........    ...+.++....+|.
T Consensus       171 ~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~----~~~i~~i~~d~~g~  244 (758)
T 3ott_A          171 IPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH----NNSIKSLALDGNGD  244 (758)
T ss_dssp             ETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE----EEEEEEEEECTTCC
T ss_pred             ccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC----CCeEEEEEEcCCCC
Confidence            987665322 2111     1134888988887776666664 45888898776543221111    12244466677776


Q ss_pred             EEEEEcCCCeEEEEeCCCcceeeccc-------ccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          454 YVAAGSADGSVYIWSISKADIVRTLK-------EHTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       454 ~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                      +.+ |+.+| +.+++..++.......       .....|.++....+|.+ -.|+..|
T Consensus       245 lWi-gT~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G  299 (758)
T 3ott_A          245 LLA-GTDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG  299 (758)
T ss_dssp             EEE-EETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS
T ss_pred             EEE-EeCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc
Confidence            655 44455 8889876654321110       12346888888877763 3344445

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.00  E-value=0.00094  Score=60.67  Aligned_cols=211  Identities=10%  Similarity=0.058  Sum_probs=109.9

Q ss_pred             EEEEEeC--CCeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeEeeeeeecC
Q 010470          281 SVIAASS--SNNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYD----RTLKVWDLHKGYCVNTIIFHS  352 (510)
Q Consensus       281 ~l~~~~~--d~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~  352 (510)
                      .++.|+.  ...+.+||..+++-...  +......-..+ . . ++.+++.|+.+    ..+.+||+.++.....-..+.
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV-F-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE-E-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE-E-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            4455553  35788999887653322  11111111222 2 2 56677777754    678999998876544332222


Q ss_pred             c--eeEEEEcCCCCEEEEecCC------CcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEec---------
Q 010470          353 N--CNALAFSMDGQTIFSGHID------GNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGR---------  414 (510)
Q Consensus       353 ~--i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~---------  414 (510)
                      .  -.+++. .++..++.|+.+      ..+.+||+.+.+-...-..+.. .....+.  .++.+++.|+.         
T Consensus        91 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           91 PRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             CCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEE
T ss_pred             cccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccc
Confidence            1  122222 267777777754      4589999887653222111110 1122222  25666666653         


Q ss_pred             CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcc--eeecccccCcCEEE
Q 010470          415 DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKAD--IVRTLKEHTAPVLS  487 (510)
Q Consensus       415 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~--~~~~~~~~~~~v~~  487 (510)
                      -..+.+||+.+..-...-........  .  .+..-++++++.|+.+     ..+.+||+.+.+  .+..+.........
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~--~--~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKN--H--GLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC  243 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBS--C--EEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred             cceEEEeCCCCCeEEECCCccchhhc--c--eEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence            34588999987654322211111111  1  2223367777777654     358999987753  23333222222233


Q ss_pred             EEEeCCCCcEEEeeCC
Q 010470          488 CSWSGLGKPLASADKN  503 (510)
Q Consensus       488 ~~~~~~~~~l~s~~~d  503 (510)
                      +.+  ++.+++.||.+
T Consensus       244 ~~~--~~~i~v~GG~~  257 (306)
T 3ii7_A          244 AAV--GSIVYVLAGFQ  257 (306)
T ss_dssp             EEE--TTEEEEEECBC
T ss_pred             EEE--CCEEEEEeCcC
Confidence            333  66777777754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.97  E-value=0.0006  Score=72.47  Aligned_cols=250  Identities=10%  Similarity=0.101  Sum_probs=143.9

Q ss_pred             CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEE
Q 010470          246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV  325 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  325 (510)
                      ..+|.|.|+.++..+..-.-   .--+.-.+|..+.++.-. ..++.|||+.+...+..+.- ..+|.--.|..  .+.|
T Consensus        47 ~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l  119 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTV  119 (1630)
T ss_pred             CceEEEEECCCCCCcccccc---cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecC--CCee
Confidence            44799999987654322111   112344577776555544 67999999998877776663 45677777764  4555


Q ss_pred             EEEeCCCcEEEEECCC-CeEeeeeeec-----CceeEEEEcCCCCEEEEec-------CCCcEEEEECCCCceeeeeccc
Q 010470          326 VSAAYDRTLKVWDLHK-GYCVNTIIFH-----SNCNALAFSMDGQTIFSGH-------IDGNLRLWDIQTGKLLSEVAAH  392 (510)
Q Consensus       326 ~s~~~dg~i~iwd~~~-~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~  392 (510)
                      +..+ +..|+.|++.. ..++..+..+     ..|..-..+++.++++..+       -.|.+.+|....+ ..+.+.+|
T Consensus       120 ~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegh  197 (1630)
T 1xi4_A          120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  197 (1630)
T ss_pred             EEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHh
Confidence            5444 56899999964 2344444333     3467777788888877432       3578889987543 23333333


Q ss_pred             ccccEEEEEEc--CC-CCEEEEEec---CCcEEEEEcCCc---eee------eEeecCCCeeecCceeEEEcCCCCEEEE
Q 010470          393 SLAAVTSISLS--RS-GNIILTSGR---DNLHNLFDIRSL---EVC------GSLRATGNRVASNWSRSCISPDESYVAA  457 (510)
Q Consensus       393 ~~~~i~~i~~~--~~-~~~l~~~~~---d~~i~i~d~~~~---~~~------~~~~~~~~~~~~~~~~~~~s~~~~~l~~  457 (510)
                      . +....+.+.  +. ...++.+..   .+.++|.++...   ...      ..+..+ .....-...+.+|+.-..++.
T Consensus       198 a-~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~-~~~~Dfpv~~~vs~k~g~iy~  275 (1630)
T 1xi4_A          198 A-ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQISEKHDVVFL  275 (1630)
T ss_pred             H-hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc-ccccCcceEEEeccccCEEEE
Confidence            2 222222221  11 122222222   368888887542   110      111111 111111223667787788888


Q ss_pred             EcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          458 GSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       458 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                      -+.-|.|++||+.++.++..-+-...+|...+-++...-++.....|.|
T Consensus       276 itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~v  324 (1630)
T 1xi4_A          276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (1630)
T ss_pred             EecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceE
Confidence            8999999999999998876655555555555444433334444455544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.90  E-value=0.025  Score=60.83  Aligned_cols=238  Identities=10%  Similarity=0.132  Sum_probs=130.4

Q ss_pred             ccceEEEEEecC----CCEEEEee---CCCeEEEEeCCCCc-cee--cccccccceeEEEEe---cCCCEEEEEeCCCeE
Q 010470          225 EGGCASILFEYN----SARLISGG---QDKSIKLWDTNTGS-LSS--TLYGCLGSVLDLAIT---HDNRSVIAASSSNNL  291 (510)
Q Consensus       225 ~~~v~~~~~s~~----~~~l~s~~---~dg~i~iwd~~~~~-~~~--~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i  291 (510)
                      -+||..++....    ...|++++   .+|.++++...=+- ...  .+. ....++.+...   +.+.+|+.+..+.+ 
T Consensus       374 ~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-  451 (1158)
T 3ei3_A          374 LGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-  451 (1158)
T ss_dssp             CCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-
T ss_pred             cCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-
Confidence            357888877532    23555544   35778877532111 111  222 22455555432   23567777776665 


Q ss_pred             EEEEcCCCCeeEee--cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC--ceeEEEEcCCCCEEE
Q 010470          292 YVWDVNSGRVRHTL--TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS--NCNALAFSMDGQTIF  367 (510)
Q Consensus       292 ~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~  367 (510)
                      .|+.+.. ..+...  .+.......+......+..++=.. ...|++.+...+..+..+..+.  .|...+.+  +..++
T Consensus       452 ~Vl~i~~-e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vv  527 (1158)
T 3ei3_A          452 RVLMLNG-EEVEETELMGFVDDQQTFFCGNVAHQQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVV  527 (1158)
T ss_dssp             EEEEEET-TEEEEECCTTCCSSSCEEEEEEETTTEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEE
T ss_pred             EEEEEeC-CcccccccccccCCCCcEEEEEcCCCeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEE
Confidence            5665532 222222  122112222222221233444444 4567888876655565555443  46666654  45666


Q ss_pred             EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCC------CCEEEEEec-CCcEEEEEcCCceeeeEeecCCCeee
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS------GNIILTSGR-DNLHNLFDIRSLEVCGSLRATGNRVA  440 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~------~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  440 (510)
                      .++ ++.+.++.+..+.........-...|.|+++.|.      +.++++|.. |++++|+++.+.+.+...........
T Consensus       528 va~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p  606 (1158)
T 3ei3_A          528 VAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIP  606 (1158)
T ss_dssp             EEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCE
T ss_pred             EEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCC
Confidence            664 6788888876654322211112268999999863      468999996 99999999998776655443322222


Q ss_pred             cCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          441 SNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       441 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      ..+.-+.+ ....+|.+|-.||.+.-+.++
T Consensus       607 ~si~l~~~-~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          607 RSILMTTF-ESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTSEEEEEEEC
T ss_pred             cEEEEEEe-CCCcEEEEEeCCCeEEEEEEc
Confidence            22222233 244688899999987655543

>4gdk_C APG16-like 1, autophagy-related protein 16-1; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_C

Probab=97.88  E-value=3.8e-06  Score=46.35  Aligned_cols=30  Identities=20%  Similarity=0.375  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhhhhhhhcccchhhHhhcCcc
Q 010470           11 IKHALKALRKRHLVEEGAHAPAIIALSRPI   40 (510)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (510)
                      ++|++++||+||+.|...|+.+|.+||+.+
T Consensus         7 rr~I~~~Lr~RdR~q~~~F~diI~~yNkLl   36 (36)
T 4gdk_C            7 KRHISEQLRRRDRLQRQAFEEIILQYNKLL   36 (36)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcccC
Confidence            578999999999999999999999999764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.85  E-value=0.0035  Score=57.25  Aligned_cols=223  Identities=13%  Similarity=0.107  Sum_probs=112.7

Q ss_pred             EEEEeeCCCeEEEEeCCCCcceec-ccccccceeEEEEecCCCEEEEEeC----CC-------eEEEEEcCCCCeeEe--
Q 010470          239 RLISGGQDKSIKLWDTNTGSLSST-LYGCLGSVLDLAITHDNRSVIAASS----SN-------NLYVWDVNSGRVRHT--  304 (510)
Q Consensus       239 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~~--  304 (510)
                      +++.|+.  .+..||..+++-... +..........+...++..++.|+.    ++       .+.+||..+++-...  
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            4444543  478899887764331 1111111222333457777777773    11       277888876653322  


Q ss_pred             ecCCCCceEEEEEecCCCCEEEEEeCC-------CcEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecC----
Q 010470          305 LTGHTDKVCAVDVSKISSRHVVSAAYD-------RTLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHI----  371 (510)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~----  371 (510)
                      +...... .++...  ++.+++.|+.+       ..+.+||+.+.+....-..+..  -.+++. .++.+++.|+.    
T Consensus        96 ~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~  171 (318)
T 2woz_A           96 LPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK  171 (318)
T ss_dssp             BSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred             CCccccc-cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence            1111111 122222  56777777754       3588899988765443222221  122222 46777777763    


Q ss_pred             --CCcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470          372 --DGNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRVASNW  443 (510)
Q Consensus       372 --dg~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~  443 (510)
                        -..+.+||+.+.+-...-..... .....+.+  ++.+++.|+.+     ..+.+||+.+..-...-..+....    
T Consensus       172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----  245 (318)
T 2woz_A          172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS----  245 (318)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB----
T ss_pred             CccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc----
Confidence              23599999987653222111110 11222222  56777777644     357789987754332211111111    


Q ss_pred             eeEEEcCCCCEEEEEcCC--------------CeEEEEeCCCcc
Q 010470          444 SRSCISPDESYVAAGSAD--------------GSVYIWSISKAD  473 (510)
Q Consensus       444 ~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~  473 (510)
                      ...+...++.+++.|+.+              ..+.+||+.+.+
T Consensus       246 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          246 SISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             SCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             ceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            112233467777777654              357788877643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.85  E-value=0.0016  Score=59.22  Aligned_cols=215  Identities=13%  Similarity=0.058  Sum_probs=108.1

Q ss_pred             CCCEEEEEeC----CCeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeC----C-----CcEEEEECCCC
Q 010470          278 DNRSVIAASS----SNNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAY----D-----RTLKVWDLHKG  342 (510)
Q Consensus       278 ~~~~l~~~~~----d~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~----d-----g~i~iwd~~~~  342 (510)
                      ++..++.|+.    -..+.+||+.+++-...  +...... .++...  ++.+++.|+.    +     ..+.+||+.+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            4455555552    23678888776653221  1111111 122222  5667777765    2     46889999887


Q ss_pred             eEeeeeeecCc--eeEEEEcCCCCEEEEecCC-----CcEEEEECCCCceeeeecccc-cccEEEEEEcCCCCEEEEEec
Q 010470          343 YCVNTIIFHSN--CNALAFSMDGQTIFSGHID-----GNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGNIILTSGR  414 (510)
Q Consensus       343 ~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~  414 (510)
                      .....-..+..  -.+++. .++..++.|+.+     ..+.+||+.+.+-...-.... ......+.+  ++.+++.|+.
T Consensus       101 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             eEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            64433222211  122222 267777777643     368899987764322211111 012222222  5677777765


Q ss_pred             C-----CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcce--eecccccC
Q 010470          415 D-----NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKADI--VRTLKEHT  482 (510)
Q Consensus       415 d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~  482 (510)
                      +     +.+.+||+.+..-...-..+...  ...  .+..-++.+++.|+.+     ..+.+||+.+.+-  +..+....
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~--~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r  253 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIR--SGA--GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR  253 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCC--BSC--EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCcc--ccc--eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence            4     46889998876543221111111  111  1222367777887764     4699999877532  22222211


Q ss_pred             cCEEEEEEeCCCCcEEEeeCCC
Q 010470          483 APVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       483 ~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                      .....+.+  ++.+++.||.++
T Consensus       254 ~~~~~~~~--~~~i~v~GG~~~  273 (308)
T 1zgk_A          254 SALGITVH--QGRIYVLGGYDG  273 (308)
T ss_dssp             BSCEEEEE--TTEEEEECCBCS
T ss_pred             cceEEEEE--CCEEEEEcCcCC
Confidence            22222232  567777777543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.83  E-value=0.002  Score=59.96  Aligned_cols=233  Identities=10%  Similarity=0.041  Sum_probs=114.8

Q ss_pred             CCCEEEEeeCC-CeEEEEeCCC--Ccc--eeccc-ccccceeEEEEecCCCEEEEEeC-C---------CeEEEEEcCCC
Q 010470          236 NSARLISGGQD-KSIKLWDTNT--GSL--SSTLY-GCLGSVLDLAITHDNRSVIAASS-S---------NNLYVWDVNSG  299 (510)
Q Consensus       236 ~~~~l~s~~~d-g~i~iwd~~~--~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~iwd~~~~  299 (510)
                      ++.+++.||.+ ..+.+||+.+  .+-  +..+. ..... .+++. -++.+++.|+. +         +.+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-ATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-CEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-ceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56666777643 4688899864  221  22222 11111 12222 25666776665 2         46889998876


Q ss_pred             CeeEeecCC-CCce-EEEEEecCCCCEEEEEeCC---------------------------------------CcEEEEE
Q 010470          300 RVRHTLTGH-TDKV-CAVDVSKISSRHVVSAAYD---------------------------------------RTLKVWD  338 (510)
Q Consensus       300 ~~~~~~~~~-~~~v-~~i~~~~~~~~~l~s~~~d---------------------------------------g~i~iwd  338 (510)
                      +-...-... .... .++.. . ++.+++.|+.+                                       ..+.+||
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd  174 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD  174 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred             cEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence            533221111 1111 12222 2 57778888754                                       5789999


Q ss_pred             CCCCeEeeeeeecC--ce-eEEEEcCCCCEEEEecC------CCcEEEEEC--CCCceee--eecccccccEEEEEEcCC
Q 010470          339 LHKGYCVNTIIFHS--NC-NALAFSMDGQTIFSGHI------DGNLRLWDI--QTGKLLS--EVAAHSLAAVTSISLSRS  405 (510)
Q Consensus       339 ~~~~~~~~~~~~~~--~i-~~i~~~~~~~~l~~~~~------dg~i~i~d~--~~~~~~~--~~~~~~~~~i~~i~~~~~  405 (510)
                      +.+.+....-..+.  .. .+++.. ++.+++.|+.      ...+.+||+  .+..-..  .+.... ......+...+
T Consensus       175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~  252 (357)
T 2uvk_A          175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD-GVAGGFAGISN  252 (357)
T ss_dssp             TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT-CCBSCEEEEET
T ss_pred             CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc-ccccceEEEEC
Confidence            98876544433221  12 233332 5666677653      345778887  3332211  111111 11111122235


Q ss_pred             CCEEEEEecC----------------------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC-
Q 010470          406 GNIILTSGRD----------------------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG-  462 (510)
Q Consensus       406 ~~~l~~~~~d----------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-  462 (510)
                      +.+++.|+.+                      ..+.+||+.+..-...-..+.....    ..++..++++++.|+.++ 
T Consensus       253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~----~~~~~~~~~i~v~GG~~~~  328 (357)
T 2uvk_A          253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY----GVSLPWNNSLLIIGGETAG  328 (357)
T ss_dssp             TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS----SEEEEETTEEEEEEEECGG
T ss_pred             CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc----ceeEEeCCEEEEEeeeCCC
Confidence            6677777632                      2577899876443222111111111    133445778888887643 


Q ss_pred             -----eEEEEeCCCcceeecc
Q 010470          463 -----SVYIWSISKADIVRTL  478 (510)
Q Consensus       463 -----~i~iwd~~~~~~~~~~  478 (510)
                           .|.++++++++.+...
T Consensus       329 ~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          329 GKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             GCEEEEEEEEEC-CCSCEEEC
T ss_pred             CCEeeeEEEEEEcCcEeEeee
Confidence                 4666788777665443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.82  E-value=0.0022  Score=58.44  Aligned_cols=210  Identities=13%  Similarity=0.097  Sum_probs=106.6

Q ss_pred             EEEEeCCCeEEEEEcCCCCeeE-eecCCCCceEEEEEecCCCCEEEEEeC-----C------CcEEEEECCCCeEeeeee
Q 010470          282 VIAASSSNNLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAY-----D------RTLKVWDLHKGYCVNTII  349 (510)
Q Consensus       282 l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~~~~  349 (510)
                      ++.|+  ..+.+||..+++-.. .+.............. ++.+++.|+.     .      ..+.+||+.+++....-.
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            34444  579999998876432 2221112222222223 6777777773     1      137889998876533322


Q ss_pred             ecCc--eeEEEEcCCCCEEEEecCC--------CcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCCEEEEEec-C--
Q 010470          350 FHSN--CNALAFSMDGQTIFSGHID--------GNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGNIILTSGR-D--  415 (510)
Q Consensus       350 ~~~~--i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~-d--  415 (510)
                      .+.+  -.+++.. ++..++.|+.+        ..+.+||+.+.+-...-..+.. .....+.  .++.+++.|+. +  
T Consensus        85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred             CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence            2221  1122222 56666777632        3589999987642221111110 1122222  35667777775 2  


Q ss_pred             ---CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCC-----eEEEEeCCCcc--eeecccccCcCE
Q 010470          416 ---NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADG-----SVYIWSISKAD--IVRTLKEHTAPV  485 (510)
Q Consensus       416 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~--~~~~~~~~~~~v  485 (510)
                         +.+.+||+.+..-...-..+.....    ..+...++++++.|+.++     .+.+||+.+.+  .+..+.......
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  237 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSL----FGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL  237 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhc----eEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence               4688999887643322111111111    122233677777777654     58899987753  222222222222


Q ss_pred             EEEEEeCCCCcEEEeeCC
Q 010470          486 LSCSWSGLGKPLASADKN  503 (510)
Q Consensus       486 ~~~~~~~~~~~l~s~~~d  503 (510)
                      ..+.+  ++.+++.||.+
T Consensus       238 ~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          238 SLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             EEEEE--TTEEEEEEEEE
T ss_pred             eEEEE--CCEEEEECCcc
Confidence            23333  56677777764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.0024  Score=58.09  Aligned_cols=189  Identities=12%  Similarity=0.110  Sum_probs=109.0

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceeccccc-ccceeEEEE--ecCCCEEEEE--eCCCeEEEEEcCCCCeeEeecC----C
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGC-LGSVLDLAI--THDNRSVIAA--SSSNNLYVWDVNSGRVRHTLTG----H  308 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~----~  308 (510)
                      ..++.++.||.|.-+|..+|+...++... ..++....-  .+.+..++.+  +.||.|+.++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47889999999999999999988777643 122221110  0112234444  5899999999888855443321    1


Q ss_pred             CCceEEEEEec--------CCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCcee--------EEEEc-----CCCCEEE
Q 010470          309 TDKVCAVDVSK--------ISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN--------ALAFS-----MDGQTIF  367 (510)
Q Consensus       309 ~~~v~~i~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~--------~i~~~-----~~~~~l~  367 (510)
                      ..++.. .-.|        ..+..+++|+.+|.+...|+.+|+.+..+.......        |....     ..+..++
T Consensus        91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence            222221 0000        035688999999999999999999999887553211        11110     1245677


Q ss_pred             EecCCCcEEEEECCCCceeeeeccccc--ccEE-----EEEEcCCCCEEEEEecCCcEEEEEcCCceeee
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSL--AAVT-----SISLSRSGNIILTSGRDNLHNLFDIRSLEVCG  430 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~i~-----~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  430 (510)
                      .|..+..+.+.+ ++|+ ...+.....  ..+.     +...+.++.+ ++++.||.|.-+|..++....
T Consensus       170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            777777777777 4554 322211000  0000     0001123555 446778888888887777654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.66  E-value=0.046  Score=52.39  Aligned_cols=104  Identities=10%  Similarity=0.087  Sum_probs=63.1

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcc--eecccc------cccceeEEEEecC---CCEEEEEeC------
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGSL--SSTLYG------CLGSVLDLAITHD---NRSVIAASS------  287 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~------  287 (510)
                      -....+|+|.|+|+++++-...+.|++++..++..  +..+..      ..+....|+|+|+   +..|+++..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34577999999998777765445799888655543  222211      2456789999996   555655542      


Q ss_pred             -------CCeEEEEEcCCC--C-----eeE-eec-CCCCceEEEEEecCCCCEEEEEe
Q 010470          288 -------SNNLYVWDVNSG--R-----VRH-TLT-GHTDKVCAVDVSKISSRHVVSAA  329 (510)
Q Consensus       288 -------d~~i~iwd~~~~--~-----~~~-~~~-~~~~~v~~i~~~~~~~~~l~s~~  329 (510)
                             ...|.-|++..+  .     .+. .+. ........+.|.| ++.++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence                   235666665432  1     111 122 1223468899999 677666654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.65  E-value=0.039  Score=51.24  Aligned_cols=235  Identities=12%  Similarity=0.173  Sum_probs=144.0

Q ss_pred             EEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCC
Q 010470          230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGH  308 (510)
Q Consensus       230 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~  308 (510)
                      +.-.+|..+.+|.=. ..++.|||+++...++.+.- ...|..-.|-.+.. |...+ +..|+-|++.. ..+.+.+.-|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCCe-EEEEc-CCeeEEecccCCCCchhheecc
Confidence            344577777776665 67999999999888777654 34566667764443 33333 45899999974 3466666544


Q ss_pred             ----CCceEEEEEecCCCCEEEEEe-------CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCC-----EEEEecC-
Q 010470          309 ----TDKVCAVDVSKISSRHVVSAA-------YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQ-----TIFSGHI-  371 (510)
Q Consensus       309 ----~~~v~~i~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~-----~l~~~~~-  371 (510)
                          ...|.....++ +.+.++..|       -.|.+.+|..+.+. .+.+.+|.. .-..+-.+|+     .++.+.. 
T Consensus       146 ~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa-~F~~~~~~g~~~~~~lf~fa~r~  222 (494)
T 1bpo_A          146 SSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA-SFAQFKMEGNAEESTLFCFAVRG  222 (494)
T ss_dssp             GGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEE-EEEEEECTTCSSEEEEEEEEECS
T ss_pred             hhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccc-cchheeeee-eeEEEecCCCCCCceEEEEEEec
Confidence                34566777777 556555333       24788899887543 233333321 1111212221     2332322 


Q ss_pred             --CCcEEEEECCCC---ce-----eeeecc---cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe
Q 010470          372 --DGNLRLWDIQTG---KL-----LSEVAA---HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR  438 (510)
Q Consensus       372 --dg~i~i~d~~~~---~~-----~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  438 (510)
                        .+.++|.++...   .+     ...+..   ....-..++.+++....++.-+.-|.+++||+.++..+..-+.....
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~  302 (494)
T 1bpo_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET  302 (494)
T ss_dssp             TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc
Confidence              378999988543   11     111111   11356778999999999999999999999999999988777666555


Q ss_pred             eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470          439 VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV  475 (510)
Q Consensus       439 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  475 (510)
                      +..    .+.+....-+++....|.|.-..++....+
T Consensus       303 iF~----t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          303 IFV----TAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEE----EEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             eEE----ecccCCCCcEEEEccCceEEEEEEccccch
Confidence            542    333344444455557777777766655443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.61  E-value=0.0064  Score=55.43  Aligned_cols=205  Identities=12%  Similarity=0.062  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCeeE-eecCCCCceEEEEEecCCCCEEEEEeC----CC-------cEEEEECCCCeEeeeeeecCc--ee
Q 010470          290 NLYVWDVNSGRVRH-TLTGHTDKVCAVDVSKISSRHVVSAAY----DR-------TLKVWDLHKGYCVNTIIFHSN--CN  355 (510)
Q Consensus       290 ~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~~--i~  355 (510)
                      .+..||..+++-.. .+.............. ++.+++.|+.    ++       .+.+||..+++....-..+.+  -.
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            47889988776433 1111111112222223 6777777773    12       277899887765433222211  12


Q ss_pred             EEEEcCCCCEEEEecCC-------CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec------CCcEEEEE
Q 010470          356 ALAFSMDGQTIFSGHID-------GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR------DNLHNLFD  422 (510)
Q Consensus       356 ~i~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~i~d  422 (510)
                      +++.. ++..++.|+.+       ..+.+||+.+.+-...-..+....-.+++. .++.+++.|+.      -+.+.+||
T Consensus       104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEE
T ss_pred             ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEc
Confidence            22222 56777777653       248889987765332211111001111222 45667777764      24689999


Q ss_pred             cCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcc--eeecccccCcCEEEEEEeCCCC
Q 010470          423 IRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKAD--IVRTLKEHTAPVLSCSWSGLGK  495 (510)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~  495 (510)
                      +.+..-...-..+....  ..  .+..-++.+++.|+.+     ..+.+||+.+.+  .+..+.........+.+  ++.
T Consensus       182 ~~~~~W~~~~~~p~~r~--~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  255 (318)
T 2woz_A          182 PKKGDWKDLAPMKTPRS--MF--GVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGS  255 (318)
T ss_dssp             TTTTEEEEECCCSSCCB--SC--EEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTE
T ss_pred             CCCCEEEECCCCCCCcc--cc--eEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCE
Confidence            98765433211111111  11  1222367777777643     357889987653  22223222222222232  566


Q ss_pred             cEEEeeCC
Q 010470          496 PLASADKN  503 (510)
Q Consensus       496 ~l~s~~~d  503 (510)
                      +++.||.+
T Consensus       256 i~v~GG~~  263 (318)
T 2woz_A          256 LYAIGGFA  263 (318)
T ss_dssp             EEEECCBC
T ss_pred             EEEECCee
Confidence            77777754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.58  E-value=0.044  Score=50.10  Aligned_cols=231  Identities=15%  Similarity=0.080  Sum_probs=124.9

Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee--Eee----cCCCCceEEEEEecC--CCCEEEEE---eCCCcEE
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR--HTL----TGHTDKVCAVDVSKI--SSRHVVSA---AYDRTLK  335 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~----~~~~~~v~~i~~~~~--~~~~l~s~---~~dg~i~  335 (510)
                      -...+.|+|.|+|.++++--..|.|++++..++...  ..+    .........++++|.  .+..|+..   ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            345689999999986666555899999986655532  112    123456789999983  13444432   2355677


Q ss_pred             EEECCCC----------eEee-eeee--cCceeEEEEcCCCCEEEEec-------------CCCcEEEEECCCCce----
Q 010470          336 VWDLHKG----------YCVN-TIIF--HSNCNALAFSMDGQTIFSGH-------------IDGNLRLWDIQTGKL----  385 (510)
Q Consensus       336 iwd~~~~----------~~~~-~~~~--~~~i~~i~~~~~~~~l~~~~-------------~dg~i~i~d~~~~~~----  385 (510)
                      -|.+..+          +.+. .+..  .+....+.|.|||.++++.+             ..|.|.-++.. ++.    
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~n  189 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGN  189 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTC
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCC
Confidence            7766541          1111 1211  23356799999998777643             24666666654 221    


Q ss_pred             ----eeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeE--------eecCCCeee------cCceeE
Q 010470          386 ----LSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGS--------LRATGNRVA------SNWSRS  446 (510)
Q Consensus       386 ----~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~--------~~~~~~~~~------~~~~~~  446 (510)
                          ...+.... .....++|+|+|.++++-. .++.-.|.-+..+....-        ......++.      ...+.+
T Consensus       190 Pf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~  268 (347)
T 3das_A          190 PFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI  268 (347)
T ss_dssp             SSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred             CCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence                11222222 4577899999887666543 222222222222211000        000000000      011234


Q ss_pred             EEcCCCCEEEEEcCCCeEEEEeCCCcce----eecccccCcCEEEEEEeCCCCcEEEe
Q 010470          447 CISPDESYVAAGSADGSVYIWSISKADI----VRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       447 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      +|. +|..++..-..+.|....+.....    ...+.+....+.+|+..|||.++++.
T Consensus       269 ~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          269 AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred             EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence            444 455666555566677666655432    22334445689999999999866553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.56  E-value=0.062  Score=51.46  Aligned_cols=143  Identities=8%  Similarity=0.123  Sum_probs=82.9

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee--EeecC------CCCceEEEEEecC--CCCEEEEEeC-------
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR--HTLTG------HTDKVCAVDVSKI--SSRHVVSAAY-------  330 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~------~~~~v~~i~~~~~--~~~~l~s~~~-------  330 (510)
                      ...+.|+|.|+|+++++-...+.|++++..++...  ..+..      .......++|+|.  .+..|+.+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35579999999986665544457888876555532  22221      2356779999984  1444443332       


Q ss_pred             ------CCcEEEEECCCC--e-----Eeee-eee--cCceeEEEEcCCCCEEEEecC-----------------------
Q 010470          331 ------DRTLKVWDLHKG--Y-----CVNT-IIF--HSNCNALAFSMDGQTIFSGHI-----------------------  371 (510)
Q Consensus       331 ------dg~i~iwd~~~~--~-----~~~~-~~~--~~~i~~i~~~~~~~~l~~~~~-----------------------  371 (510)
                            ...|.-|+...+  .     .+.. +..  .+....++|.|||.++++.+.                       
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~  186 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQE  186 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHH
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccccc
Confidence                  235666665322  1     1111 111  134789999999987776432                       


Q ss_pred             ---------CCcEEEEECCCCc-----------eeeeecccccccEEEEEEcCCCCEEEEE
Q 010470          372 ---------DGNLRLWDIQTGK-----------LLSEVAAHSLAAVTSISLSRSGNIILTS  412 (510)
Q Consensus       372 ---------dg~i~i~d~~~~~-----------~~~~~~~~~~~~i~~i~~~~~~~~l~~~  412 (510)
                               .|.|.-++.. +.           ....+.... ..+..++|+|+|.++++-
T Consensus       187 ~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d  245 (454)
T 1cru_A          187 LNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSE  245 (454)
T ss_dssp             HHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEE
T ss_pred             ccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEe
Confidence                     2456656643 32           112232222 578899999988766654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.55  E-value=0.0058  Score=51.07  Aligned_cols=176  Identities=10%  Similarity=-0.013  Sum_probs=97.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCe------Eeeeeee--cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee------e
Q 010470          322 SRHVVSAAYDRTLKVWDLHKGY------CVNTIIF--HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL------S  387 (510)
Q Consensus       322 ~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~  387 (510)
                      ..+|++...| +++.=...++.      ....+..  -..+..++|+|+|.+.++  .+|.++-.+..+....      .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            4455666656 55554444433      1222222  146889999999997666  6788888776552221      1


Q ss_pred             eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee----ecCceeEEEcCCCCEEEEEcCCCe
Q 010470          388 EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV----ASNWSRSCISPDESYVAAGSADGS  463 (510)
Q Consensus       388 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~dg~  463 (510)
                      .+....-....++.|.|+|.+.++  .||.|+-++..+.....-+ .....+    -..+..+.+.|+|.+.++.  ||.
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl-~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~  155 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWI-ARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ  155 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH-HHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCcee-ccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence            221111122478999999998887  5588877775431111000 001111    1234568899999988877  777


Q ss_pred             EEEEeCCCccee------eccc-ccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470          464 VYIWSISKADIV------RTLK-EHTAPVLSCSWSGLGKPLASADKNGVVC  507 (510)
Q Consensus       464 i~iwd~~~~~~~------~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~  507 (510)
                      ++-+...++...      ..+. ..-.....+.|.|+|...++.  +|.++
T Consensus       156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence            654443322111      1111 122234557799988765554  77554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.48  E-value=0.072  Score=50.10  Aligned_cols=260  Identities=10%  Similarity=0.076  Sum_probs=126.4

Q ss_pred             cceEEEEEec-CCCEEEEeeCCC----eEEEEeCCCCcceeccc------c--------cccceeEEEEecC--CCEEEE
Q 010470          226 GGCASILFEY-NSARLISGGQDK----SIKLWDTNTGSLSSTLY------G--------CLGSVLDLAITHD--NRSVIA  284 (510)
Q Consensus       226 ~~v~~~~~s~-~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~------~--------~~~~v~~~~~~~~--~~~l~~  284 (510)
                      ..|.+|+++| +...|+.++..|    .|...+ +.+..-..+.      .        ....|.++++.|.  ...+++
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            4699999998 334444454444    344332 2232211111      1        1125778889872  456666


Q ss_pred             EeCCCeEEEEEcCCCCeeEeecC-------------------CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          285 ASSSNNLYVWDVNSGRVRHTLTG-------------------HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       285 ~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      ++..+.|...+ +.++.-..+..                   ....+.+|.+.|.+...++.+..++.|...+- .+..-
T Consensus       134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW  211 (394)
T 3b7f_A          134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDW  211 (394)
T ss_dssp             EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSC
T ss_pred             EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCc
Confidence            66666665543 23332222211                   12357889898754555555554555554432 22211


Q ss_pred             eeeee--------------cCceeEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeecc-ccc---ccEEEEEEcCC-
Q 010470          346 NTIIF--------------HSNCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAA-HSL---AAVTSISLSRS-  405 (510)
Q Consensus       346 ~~~~~--------------~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~---~~i~~i~~~~~-  405 (510)
                      ..+..              ...+.++.++|. ...+++++..| |+..+ ..++.-..+.. ...   ..+.++.++|. 
T Consensus       212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~  289 (394)
T 3b7f_A          212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRD  289 (394)
T ss_dssp             EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred             eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCC
Confidence            11110              123788999885 46677666544 55554 23433333321 111   23567888863 


Q ss_pred             CCEEEEEec-----------CCcEEEEEcCC-ceeeeEeec--CCCee--ecCceeEEEcCC-CCEEEEEcCCCeEEEEe
Q 010470          406 GNIILTSGR-----------DNLHNLFDIRS-LEVCGSLRA--TGNRV--ASNWSRSCISPD-ESYVAAGSADGSVYIWS  468 (510)
Q Consensus       406 ~~~l~~~~~-----------d~~i~i~d~~~-~~~~~~~~~--~~~~~--~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd  468 (510)
                      ...++++..           ++...+|.... ++....+..  +....  ......++++|. +..|++++.++.|+.-+
T Consensus       290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~  369 (394)
T 3b7f_A          290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA  369 (394)
T ss_dssp             TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES
T ss_pred             CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC
Confidence            344444432           23344555443 233222221  11000  001124778874 45566776666665433


Q ss_pred             CCCcceeecccccCcCEEEEEEe
Q 010470          469 ISKADIVRTLKEHTAPVLSCSWS  491 (510)
Q Consensus       469 ~~~~~~~~~~~~~~~~v~~~~~~  491 (510)
                       +.+.....+..+-..+.++.|.
T Consensus       370 -D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          370 -DEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             -STTSBCEEEECSCSCEEEEEEE
T ss_pred             -CCCCCceEcccCCCCeeEEEEe
Confidence             4454444444444567777764

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.47  E-value=0.018  Score=46.26  Aligned_cols=73  Identities=23%  Similarity=0.258  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA----LELVVSENQQIRAQLEEMTMKAKNAEAENKMLVD  154 (510)
Q Consensus        82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~----~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~  154 (510)
                      +.+.+...++...+++..+.++..++..++.+++....+    +..|+.+...++.....+...+..++..|+.+..
T Consensus        47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr  123 (189)
T 2v71_A           47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER  123 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            666677777777777777777777777777777766655    5677888888888888888888888777776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.43  E-value=0.0074  Score=56.04  Aligned_cols=219  Identities=12%  Similarity=0.076  Sum_probs=105.1

Q ss_pred             CCCEEEEEeC-CCeEEEEEcCC--CCee--EeecCCCCceEEEEEecCCCCEEEEEeC-C---------CcEEEEECCCC
Q 010470          278 DNRSVIAASS-SNNLYVWDVNS--GRVR--HTLTGHTDKVCAVDVSKISSRHVVSAAY-D---------RTLKVWDLHKG  342 (510)
Q Consensus       278 ~~~~l~~~~~-d~~i~iwd~~~--~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~~~-d---------g~i~iwd~~~~  342 (510)
                      ++..++.|+. ...+.+||+.+  .+-.  ..+......-.+++..  ++.+++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5555566653 34788888864  3221  1122011111222222  5667777765 2         46899999887


Q ss_pred             eEeeeeeec-Cc--eeEEEEcCCCCEEEEecCC---------------------------------------CcEEEEEC
Q 010470          343 YCVNTIIFH-SN--CNALAFSMDGQTIFSGHID---------------------------------------GNLRLWDI  380 (510)
Q Consensus       343 ~~~~~~~~~-~~--i~~i~~~~~~~~l~~~~~d---------------------------------------g~i~i~d~  380 (510)
                      .....-... ..  -.+++. .++.+++.|+.+                                       ..+.+||+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            644332222 11  122222 477777888754                                       47899998


Q ss_pred             CCCceeeeecccccccE-EEEEEcCCCCEEEEEec------CCcEEEEEc--CCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          381 QTGKLLSEVAAHSLAAV-TSISLSRSGNIILTSGR------DNLHNLFDI--RSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       381 ~~~~~~~~~~~~~~~~i-~~i~~~~~~~~l~~~~~------d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      .+.+-...-........ .+++.. ++.+++.|+.      ...+.+||+  .+..-.. +.....+. ......+...+
T Consensus       176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~-~~~~~~~~-~~~~~~~~~~~  252 (357)
T 2uvk_A          176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK-LAPVSSPD-GVAGGFAGISN  252 (357)
T ss_dssp             TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEE-CCCSSTTT-CCBSCEEEEET
T ss_pred             CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEe-cCCCCCCc-ccccceEEEEC
Confidence            87643322111110111 222222 5666666653      345777876  3332211 11111110 01111234456


Q ss_pred             CCEEEEEcCC----------------------CeEEEEeCCCcc--eeecccccCcCEEEEEEeCCCCcEEEeeCCC
Q 010470          452 ESYVAAGSAD----------------------GSVYIWSISKAD--IVRTLKEHTAPVLSCSWSGLGKPLASADKNG  504 (510)
Q Consensus       452 ~~~l~~~~~d----------------------g~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  504 (510)
                      +.+++.|+.+                      ..+.+||+.+.+  .+..+......-.++.  .++++++.||.++
T Consensus       253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~  327 (357)
T 2uvk_A          253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETA  327 (357)
T ss_dssp             TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECG
T ss_pred             CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCC
Confidence            7777777732                      257889987643  3333332222222233  3677788888653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.36  E-value=0.032  Score=51.73  Aligned_cols=145  Identities=11%  Similarity=0.161  Sum_probs=92.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEeeeeeec-----CceeEEEEcCCCCEEEEecCCCcEEEEECCCCc-----------
Q 010470          321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-----SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK-----------  384 (510)
Q Consensus       321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------  384 (510)
                      ++..++.+- ++.|+.-++..+..-+.+..+     ..+..+..+|+|.+|+..+. ..|.|..+..+.           
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence            444444444 467777777644333333333     25788999999999998765 478888887332           


Q ss_pred             -eeeeeccc-----ccccEEEEEEcCC---CCEEEEEecCCcEEEEEcCCce-eeeEeecCCCeee-----cCceeEEEc
Q 010470          385 -LLSEVAAH-----SLAAVTSISLSRS---GNIILTSGRDNLHNLFDIRSLE-VCGSLRATGNRVA-----SNWSRSCIS  449 (510)
Q Consensus       385 -~~~~~~~~-----~~~~i~~i~~~~~---~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~-----~~~~~~~~s  449 (510)
                       ..+.+...     ...+|..+.|+|-   +..|++-..|+.|++||+.... ....+........     ..+.+++|.
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg  188 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS  188 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence             11122221     1367999999995   5689999999999999998521 1112322111111     356678999


Q ss_pred             CCCCEEEEEc--CCCeEEEE
Q 010470          450 PDESYVAAGS--ADGSVYIW  467 (510)
Q Consensus       450 ~~~~~l~~~~--~dg~i~iw  467 (510)
                      ++|-.|++.+  .+|.|+-.
T Consensus       189 ~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          189 KDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TTSSCEEEEECTTSCEEEEE
T ss_pred             CCCcEEEEEecCCCCCEEEE
Confidence            9887777744  77888754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.35  E-value=0.01  Score=49.56  Aligned_cols=176  Identities=9%  Similarity=-0.033  Sum_probs=97.2

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCe------eEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee--
Q 010470          278 DNRSVIAASSSNNLYVWDVNSGRV------RHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI--  348 (510)
Q Consensus       278 ~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--  348 (510)
                      ....|++...| +|+.=...++..      ...+-. -=..+..++|+| ++.+.++  .+|.+.-.+..+.....-+  
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccccc
Confidence            34556666676 666655544431      112211 124677999999 7765555  6788777776542211111  


Q ss_pred             ---eec---CceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee------eeecccccccEEEEEEcCCCCEEEEEecCC
Q 010470          349 ---IFH---SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL------SEVAAHSLAAVTSISLSRSGNIILTSGRDN  416 (510)
Q Consensus       349 ---~~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~  416 (510)
                         ...   ....++.|.|+|.+.++  .||.|+-++..+...-      ..+....-..+..|.+.|+|.+.++.  |+
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg  154 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ  154 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred             ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence               111   12578999999998887  5699988886442211      11222122468999999999988877  66


Q ss_pred             cEEEEEcCCceee-----eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470          417 LHNLFDIRSLEVC-----GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY  465 (510)
Q Consensus       417 ~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  465 (510)
                      .++-....+....     ........  ......+.|+++|.+.++.  +|.++
T Consensus       155 ~lyr~~~P~~~~~~wl~~~~~~g~~g--~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          155 QFYKALPPVSNQDNWLARATKIGQGG--WDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             EEEEECCCSSTTCCHHHHCEEEESSS--GGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             cEEecCCCCCCCcccccccceeccCC--cceEEEEEECCCCcEEEEe--CCeEE
Confidence            6533222211100     00001000  0122335688888877766  66444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.33  E-value=0.083  Score=47.42  Aligned_cols=209  Identities=9%  Similarity=0.007  Sum_probs=116.2

Q ss_pred             ecCCCEEEEee--CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC--------------CeEEEEEcC
Q 010470          234 EYNSARLISGG--QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS--------------NNLYVWDVN  297 (510)
Q Consensus       234 s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~iwd~~  297 (510)
                      +++|..|+...  .++.|...+.+... ...+...    .+-.++++|.+|+.+...              ..|+..++.
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            35566665553  35666666665333 3333321    234568899988887643              467777777


Q ss_pred             CCCeeEeecCCCCceEEEEEecCCCCEEEEEe----CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC-C
Q 010470          298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA----YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI-D  372 (510)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d  372 (510)
                      .++... +...  .  +..|++ .++.|+-..    .+..|...++.... ...+..+. +  ..++|+++.|+-.+. .
T Consensus        97 g~~~~~-l~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~-~--~~~~~~g~~iy~t~~g~  166 (302)
T 3s25_A           97 GHGSTV-LDPD--P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHY-L--FTCNTSDRYFYYNNPKN  166 (302)
T ss_dssp             SCCCEE-EECS--C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSC-C--CCSEEETTEEEEECTTT
T ss_pred             CCcceE-eecC--C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCC-c--eEeeEECCEEEEEeCCC
Confidence            655332 3211  1  124566 455555544    35567777776433 33333322 2  345778888775544 6


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC--cEEEEEcCCceeeeEeecCCCeeecCceeEEEcC
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN--LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP  450 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  450 (510)
                      ..|++.++..+.....+..    ... ..++|++.+|+-...++  .|..-++..... ..+..  ...      ..++|
T Consensus       167 ~~Iy~~~l~g~~~~~l~~~----~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~------~~~~~  232 (302)
T 3s25_A          167 GQLYRYDTASQSEALFYDC----NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI------EHYNV  232 (302)
T ss_dssp             CCEEEEETTTTEEEEEECS----CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE------EEEEE
T ss_pred             ceEEEEECCCCCEEEEeCC----Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc------ceEEE
Confidence            7888888866554333321    222 23569899888766443  566666654432 22211  111      34788


Q ss_pred             CCCEEEEEcC--CCeEEEEeCCC
Q 010470          451 DESYVAAGSA--DGSVYIWSISK  471 (510)
Q Consensus       451 ~~~~l~~~~~--dg~i~iwd~~~  471 (510)
                      ++.+|+.++.  .+.|..-++..
T Consensus       233 ~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          233 YGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             ETTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCEEEEEECCCCcEEEEEECCC
Confidence            8988876532  35677767654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.30  E-value=0.026  Score=57.57  Aligned_cols=192  Identities=9%  Similarity=0.108  Sum_probs=105.7

Q ss_pred             cCCCEEEEeeCC----CeEEEEeCCCCcceecc-c------ccccceeEEEEec-CCCEEEEEeCC------CeEEEEEc
Q 010470          235 YNSARLISGGQD----KSIKLWDTNTGSLSSTL-Y------GCLGSVLDLAITH-DNRSVIAASSS------NNLYVWDV  296 (510)
Q Consensus       235 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~iwd~  296 (510)
                      .++..++.||.+    ..+.+||..++.....- .      .....-.+++..+ ++..++.|+.+      +.+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            567778888754    46888998776532211 1      1111112333343 77777777643      35888998


Q ss_pred             CCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEeeeee---ec---CceeEEEEcCC-CCE
Q 010470          297 NSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTII---FH---SNCNALAFSMD-GQT  365 (510)
Q Consensus       297 ~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~---~~---~~i~~i~~~~~-~~~  365 (510)
                      .+.+-...  +...... .+..... ++.+++.||.++  .+.+||+.++.....-.   .+   ....++.+..+ +..
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            87543222  1111111 2222323 677888887655  79999998876544322   11   11233555554 667


Q ss_pred             EEEecC--C-----CcEEEEECCCCce-----eeeecc---cccccEEEEEEcCCCCEEEEEec--------CCcEEEEE
Q 010470          366 IFSGHI--D-----GNLRLWDIQTGKL-----LSEVAA---HSLAAVTSISLSRSGNIILTSGR--------DNLHNLFD  422 (510)
Q Consensus       366 l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~--------d~~i~i~d  422 (510)
                      ++.|+.  +     ..+.+||+.+..-     -..+..   ...... ++....++.+++.|+.        ...+.+||
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence            777765  2     3589999987761     111111   111122 2333333677777774        34689999


Q ss_pred             cCCceee
Q 010470          423 IRSLEVC  429 (510)
Q Consensus       423 ~~~~~~~  429 (510)
                      +.+..-.
T Consensus       633 ~~t~~W~  639 (695)
T 2zwa_A          633 PLSETLT  639 (695)
T ss_dssp             TTTTEEE
T ss_pred             CCCCeEE
Confidence            9876543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.30  E-value=0.042  Score=56.00  Aligned_cols=196  Identities=7%  Similarity=0.027  Sum_probs=105.2

Q ss_pred             cCCCEEEEEeCC----CeEEEEEcCCCCeeEee-c-----CCC-CceEEEEEecCCCCEEEEEeCC------CcEEEEEC
Q 010470          277 HDNRSVIAASSS----NNLYVWDVNSGRVRHTL-T-----GHT-DKVCAVDVSKISSRHVVSAAYD------RTLKVWDL  339 (510)
Q Consensus       277 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~-~-----~~~-~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~  339 (510)
                      .++..++.|+.+    +.+.+||+.+++....- .     ... ..-.++...+.++.+++.||.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456667777643    46888998877643322 1     011 1112233321145677777754      35889999


Q ss_pred             CCCeEeeeeeecC--ceeEEEEcCCCCEEEEecCCC--cEEEEECCCCceeeeec---cc-ccccEEEEEEcCC-CCEEE
Q 010470          340 HKGYCVNTIIFHS--NCNALAFSMDGQTIFSGHIDG--NLRLWDIQTGKLLSEVA---AH-SLAAVTSISLSRS-GNIIL  410 (510)
Q Consensus       340 ~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~---~~-~~~~i~~i~~~~~-~~~l~  410 (510)
                      .+......-..+.  .-.+++...++..++.|+.++  .+.+||+.+..-...-.   .. ......++.+..+ +.+++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            8875443322221  123344434788888887654  69999998765322211   01 1122333555555 66777


Q ss_pred             EEecC-------CcEEEEEcCCcee-----eeEeecCCCeeecCceeEEEcCCCCEEEEEcCC--------CeEEEEeCC
Q 010470          411 TSGRD-------NLHNLFDIRSLEV-----CGSLRATGNRVASNWSRSCISPDESYVAAGSAD--------GSVYIWSIS  470 (510)
Q Consensus       411 ~~~~d-------~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--------g~i~iwd~~  470 (510)
                      .|+.+       +.+.+||+.+...     ...+.... ........++...++.+++.|+.+        ..|.+||+.
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            77652       4588999987661     11221110 011111113333337777777743        459999988


Q ss_pred             Ccc
Q 010470          471 KAD  473 (510)
Q Consensus       471 ~~~  473 (510)
                      +.+
T Consensus       635 t~~  637 (695)
T 2zwa_A          635 SET  637 (695)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.19  E-value=0.039  Score=51.18  Aligned_cols=142  Identities=15%  Similarity=0.202  Sum_probs=94.0

Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC----CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--------
Q 010470          276 THDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH----TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGY--------  343 (510)
Q Consensus       276 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------  343 (510)
                      ..+|..++++-. +.||.-++..+...+.+...    -..|..+..+| ++.+++..+ +..|.|..+..+.        
T Consensus        29 ~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           29 SQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             ETTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred             EcCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccc
Confidence            445555555543 57777777654444444332    23577899999 888888877 6689999887332        


Q ss_pred             ----Eeeeeee-------cCceeEEEEcC---CCCEEEEecCCCcEEEEECCCCc--eeeeeccc--------ccccEEE
Q 010470          344 ----CVNTIIF-------HSNCNALAFSM---DGQTIFSGHIDGNLRLWDIQTGK--LLSEVAAH--------SLAAVTS  399 (510)
Q Consensus       344 ----~~~~~~~-------~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~--------~~~~i~~  399 (510)
                          ..+.+..       ..+|..+.|+|   .+..|++-..|+.|++||+....  +. .+...        ....|.+
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence                1122222       34599999999   46689999999999999997521  22 22111        1146889


Q ss_pred             EEEcCCCCEEEEEe--cCCcEEEE
Q 010470          400 ISLSRSGNIILTSG--RDNLHNLF  421 (510)
Q Consensus       400 i~~~~~~~~l~~~~--~d~~i~i~  421 (510)
                      ++|.+++-.|++.+  .+|.|+-.
T Consensus       185 ~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          185 LEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999888777755  77877653

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.12  E-value=0.073  Score=42.83  Aligned_cols=53  Identities=21%  Similarity=0.261  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           93 ITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNA  145 (510)
Q Consensus        93 i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~  145 (510)
                      +..|+.++..++..+..+...+-.+...+..+....-.....+..++.++..+
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a  142 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA  142 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33444444444444444444444444444433333333333444444444333

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.10  E-value=0.22  Score=47.89  Aligned_cols=216  Identities=13%  Similarity=0.122  Sum_probs=126.5

Q ss_pred             cCCCEEEEeeC-CCeEEEEeCCCCcceeccc-ccccceeEEEEe--cCCCEEEEEeC-------CCeE---------EEE
Q 010470          235 YNSARLISGGQ-DKSIKLWDTNTGSLSSTLY-GCLGSVLDLAIT--HDNRSVIAASS-------SNNL---------YVW  294 (510)
Q Consensus       235 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~-------d~~i---------~iw  294 (510)
                      .||++|+.-.. +..|-..++...++-..+. .....+.+++|-  |+..|+++++.       ||..         .+|
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f  219 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY  219 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEE
Confidence            36778877664 6678888888776644433 345677888885  78888888764       2221         111


Q ss_pred             ---EcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC--------------------------------------C-
Q 010470          295 ---DVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--------------------------------------R-  332 (510)
Q Consensus       295 ---d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d--------------------------------------g-  332 (510)
                         |..+.+....+.- .+....+...+ ++.+.++.+.+                                      + 
T Consensus       220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~-~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          220 NAIDAETMEMAFQVIV-DGNLDNTDADY-TGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEETTTCSEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEcCCccEEEEEEEc-CCChhhcCCCC-CCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence               2222222111110 01111122223 33444443321                                      1 


Q ss_pred             -cEEEEECCC----C-eEeeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCC------ce-------eeeeccc
Q 010470          333 -TLKVWDLHK----G-YCVNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTG------KL-------LSEVAAH  392 (510)
Q Consensus       333 -~i~iwd~~~----~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~------~~-------~~~~~~~  392 (510)
                       .|.+.|.+.    + ..+..+..+..+..+.++|||+++++++ .+.++.++|+...      +.       ...... 
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-  376 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-  376 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-
Confidence             345555544    2 2334445556688999999999988654 6789999998742      11       222222 


Q ss_pred             ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc----------eeeeEeecCCCeeecCceeEEE------cCCCCEEE
Q 010470          393 SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL----------EVCGSLRATGNRVASNWSRSCI------SPDESYVA  456 (510)
Q Consensus       393 ~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~------s~~~~~l~  456 (510)
                       .......+|+++|+...+..-|..|.-|++...          ..+..+..+..+..     +..      .|+|++|+
T Consensus       377 -GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH-----~~~~~get~~~dGk~lv  450 (638)
T 3sbq_A          377 -GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGH-----LHASLCETNEADGKWLV  450 (638)
T ss_dssp             -CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-----EEETTTTSTTCCSCEEE
T ss_pred             -CCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcc-----cccCCCccCCCCccEEE
Confidence             256778999999966666678999999999753          45556655554433     222      57888888


Q ss_pred             EEc
Q 010470          457 AGS  459 (510)
Q Consensus       457 ~~~  459 (510)
                      +.+
T Consensus       451 ~ln  453 (638)
T 3sbq_A          451 ALS  453 (638)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            865

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.0073  Score=46.01  Aligned_cols=21  Identities=14%  Similarity=0.104  Sum_probs=0.0

Q ss_pred             HHHHHHhhhhhhhcccchhhHh
Q 010470           14 ALKALRKRHLVEEGAHAPAIIA   35 (510)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~   35 (510)
                      -++.|+.|+.+| +.|.+++..
T Consensus        30 l~~rL~~Rd~~E-~~~~~l~~e   50 (152)
T 3a7p_A           30 LIRRLTDRNDKE-AHLNELFQD   50 (152)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHhhhHH-HHHHHHHHh
Confidence            577888888874 344444433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.91  E-value=0.046  Score=58.59  Aligned_cols=233  Identities=10%  Similarity=0.139  Sum_probs=130.2

Q ss_pred             EEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-CCeeEeecCC--
Q 010470          232 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-GRVRHTLTGH--  308 (510)
Q Consensus       232 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~--  308 (510)
                      -.+|..+.+|.-. ..++.|||+++...+.++.- ..+|..-.|-.+.. |+..+ +..|+-|++.. ..+...+.-|  
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~  147 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSS  147 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence            4467666666554 67899999998877776654 34566667764444 33332 35799999964 2354444444  


Q ss_pred             --CCceEEEEEecCCCCEEEEEe-------CCCcEEEEECCCCeEeeeeeecCc-eeEEEEc--CC-CCEEEEec---CC
Q 010470          309 --TDKVCAVDVSKISSRHVVSAA-------YDRTLKVWDLHKGYCVNTIIFHSN-CNALAFS--MD-GQTIFSGH---ID  372 (510)
Q Consensus       309 --~~~v~~i~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~--~~-~~~l~~~~---~d  372 (510)
                        ...|..-..++ +...++..|       -.|.+.+|....+. .+.+.+|.. ...+.+.  +. ...++.+.   ..
T Consensus       148 L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          148 LAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             cccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence              35566666776 555544332       35788888876443 222222211 1111111  11 11222221   13


Q ss_pred             CcEEEEECCCC---ceee------eeccc--ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeec
Q 010470          373 GNLRLWDIQTG---KLLS------EVAAH--SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS  441 (510)
Q Consensus       373 g~i~i~d~~~~---~~~~------~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  441 (510)
                      |.++|.++...   .+..      .+..+  ...-+.++..++....++.-+.-|.+++||+.++..+..-+.....+..
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~  305 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV  305 (1630)
T ss_pred             ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEE
Confidence            68888887442   1111      11111  1245667888888889999999999999999998876655544443322


Q ss_pred             CceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce
Q 010470          442 NWSRSCISPDESYVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       442 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  474 (510)
                          .+.+....-+++....|.|.-..++....
T Consensus       306 ----~~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          306 ----TAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             ----eccCCCCCceEEEcCCceEEEEEEccchh
Confidence                22222222233334566666555554443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.90  E-value=0.18  Score=43.78  Aligned_cols=51  Identities=16%  Similarity=0.222  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAE  146 (510)
Q Consensus        96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~  146 (510)
                      +..+++.+..++..++.++.+++..++.++.+.+.+...+..++..+....
T Consensus        95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~  145 (256)
T 3na7_A           95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE  145 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444444444444333

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.86  E-value=0.24  Score=44.43  Aligned_cols=176  Identities=10%  Similarity=0.076  Sum_probs=100.9

Q ss_pred             EEEEecCCCEEEEeeCC--------------CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----CCCeE
Q 010470          230 SILFEYNSARLISGGQD--------------KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----SSNNL  291 (510)
Q Consensus       230 ~~~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i  291 (510)
                      +--++++|.+|+-+...              ..|+..+++.+.... +...    .+..|+++++.|+...    .+..|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEEeCCEEEEEeecCCCCceE
Confidence            34567889888766543              367777777654322 2211    2236788999888776    33456


Q ss_pred             EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec
Q 010470          292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV-SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  370 (510)
                      +..++... ....+..+..    ..++| .+..|+ +......|.+.++..+.....+.  .... ..+.|++.+|+-..
T Consensus       132 y~~~~dGs-~~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~  202 (302)
T 3s25_A          132 YRIRIDGE-EKKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMD  202 (302)
T ss_dssp             EEEETTSC-CCEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEE
T ss_pred             EEEECCCC-CeEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEE
Confidence            66666533 3344443332    34556 444455 44446789999987665443322  2222 34568888887554


Q ss_pred             CC--CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec--CCcEEEEEcCC
Q 010470          371 ID--GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR--DNLHNLFDIRS  425 (510)
Q Consensus       371 ~d--g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~i~d~~~  425 (510)
                      ..  ..|..-++.... ...+..   ..+  ..|+|++..|+.+..  .+.|...++..
T Consensus       203 ~~~~~~I~~~~ldG~~-~~~Lt~---~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          203 VNRDNAIVHVNINNPN-PVVLTE---ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             GGGTTEEEEECSSSCC-CEECSC---SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             cCCCcEEEEEECCCCC-eEEEeC---CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            33  357777765443 333332   223  337888888876533  35666666654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.83  E-value=0.11  Score=55.10  Aligned_cols=36  Identities=11%  Similarity=0.224  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQI  131 (510)
Q Consensus        96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l  131 (510)
                      +++++..+++++.+++++++++.++++.++...+++
T Consensus       982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A          982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444443333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.80  E-value=0.08  Score=38.16  Aligned_cols=27  Identities=11%  Similarity=0.131  Sum_probs=13.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQL   72 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l   72 (510)
                      ....++..|+.+...+......+..++
T Consensus         6 aIKkKm~~lk~e~e~a~drae~~e~~~   32 (101)
T 3u1c_A            6 AIKKKMQMLKLDKENALDRAEQAEADK   32 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555655555544444443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.80  E-value=0.22  Score=43.26  Aligned_cols=16  Identities=13%  Similarity=-0.037  Sum_probs=8.6

Q ss_pred             EEEEeeCCCeEEEEeC
Q 010470          239 RLISGGQDKSIKLWDT  254 (510)
Q Consensus       239 ~l~s~~~dg~i~iwd~  254 (510)
                      -++.|-.-|.|-+|.-
T Consensus       221 ~Iv~Cp~CgRIL~~~~  236 (256)
T 3na7_A          221 DMITCPYCGRILYAEG  236 (256)
T ss_dssp             SCEECTTTCCEEECSC
T ss_pred             CEEECCCCCeeEEeCc
Confidence            3445555566666643

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.74  E-value=0.14  Score=40.05  Aligned_cols=12  Identities=25%  Similarity=0.518  Sum_probs=3.6

Q ss_pred             HHHHHHHHHHHH
Q 010470           50 KADNLETELQQC   61 (510)
Q Consensus        50 ~~~~l~~el~~~   61 (510)
                      ++..|+..|.++
T Consensus         7 Ki~~LekQL~E~   18 (168)
T 3o0z_A            7 KLSQLQKQLEEA   18 (168)
T ss_dssp             ---CTHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            334444444333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=96.64  E-value=0.1  Score=37.25  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHH
Q 010470           51 ADNLETELQQCYKAQSRLSEQLVV   74 (510)
Q Consensus        51 ~~~l~~el~~~~k~~~~~~~~l~~   74 (510)
                      ...|+.+|++++....+...+...
T Consensus        27 T~lLq~qLTqAQe~l~~~eaQAaT   50 (121)
T 3mq7_A           27 THLLQQELTEAQKGFQDVEAQAAT   50 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555444444433333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.56  E-value=0.088  Score=35.42  Aligned_cols=61  Identities=21%  Similarity=0.278  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA  142 (510)
Q Consensus        82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~  142 (510)
                      +...+++.-..|..++.+++.++++...|..+.+++....+.+..|..+++.+...-+.++
T Consensus        11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl   71 (81)
T 2jee_A           11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555566666666666655555555555444444445544444444433333

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.55  E-value=0.52  Score=44.14  Aligned_cols=179  Identities=8%  Similarity=0.022  Sum_probs=89.1

Q ss_pred             CEEEEeeCCCeEEEEeCCC-Ccceecc--cccccceeEEEEec-CCCEEEEEeCCC----eEEEEEcCCCCeeEeecC--
Q 010470          238 ARLISGGQDKSIKLWDTNT-GSLSSTL--YGCLGSVLDLAITH-DNRSVIAASSSN----NLYVWDVNSGRVRHTLTG--  307 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~--  307 (510)
                      ..|+.|+..| +.+++... +..-..+  ......|.+|++.| +...+++++..|    .|...+ +.++.-..+..  
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence            3677777666 55554432 2221111  12245789999998 333455555444    444332 33332222110  


Q ss_pred             ------------CCCceEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEeeeee--------------------ecCce
Q 010470          308 ------------HTDKVCAVDVSKIS-SRHVVSAAYDRTLKVWDLHKGYCVNTII--------------------FHSNC  354 (510)
Q Consensus       308 ------------~~~~v~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~i  354 (510)
                                  ....|.++.+.|.+ ...++.++..+.|...+-. +..-..+.                    ....+
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i  179 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM  179 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCce
Confidence                        11257788888744 5667766666666655432 22111111                    11236


Q ss_pred             eEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeeccc-c-----------cccEEEEEEcCC-CCEEEEEecCCcEEE
Q 010470          355 NALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAH-S-----------LAAVTSISLSRS-GNIILTSGRDNLHNL  420 (510)
Q Consensus       355 ~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~-----------~~~i~~i~~~~~-~~~l~~~~~d~~i~i  420 (510)
                      .++.++|. ...++++..++.|...+ ..++.-..+... .           ...+.++.++|. ...|+++...+ |..
T Consensus       180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~  257 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR  257 (394)
T ss_dssp             EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred             eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence            78999873 44555555445455443 233322222110 0           124889999986 45666666544 444


Q ss_pred             E
Q 010470          421 F  421 (510)
Q Consensus       421 ~  421 (510)
                      .
T Consensus       258 s  258 (394)
T 3b7f_A          258 M  258 (394)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.50  E-value=0.41  Score=42.42  Aligned_cols=218  Identities=15%  Similarity=0.095  Sum_probs=106.2

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee-
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN-  346 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-  346 (510)
                      ..|..++....  ..+.-. ||.|+.|-....-.+..-......|..++...  ...++. . ||.|+.|-....-.+. 
T Consensus        24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~   96 (282)
T 3qhy_B           24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTV   96 (282)
T ss_dssp             SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred             CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCC
Confidence            35677766433  333335 89999997654221111111234566676643  333444 5 8999999765321111 


Q ss_pred             eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470          347 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~  426 (510)
                      .......|..++...  .+.+.-+ +|.|+.|-....-.+- +.......|..++...+.  .++-. ||.++.|-....
T Consensus        97 P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~  169 (282)
T 3qhy_B           97 PAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYF  169 (282)
T ss_dssp             CGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTT
T ss_pred             CcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCC
Confidence            011123566666643  3333344 8999999764422111 111112457666654432  22233 788888876542


Q ss_pred             eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                      ..+..    .......+..++.  .....++- .||.|+.|-......+..-......|..++-...  ..+.-. ||.|
T Consensus       170 gqlg~----p~~~~~~v~~i~~--G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--h~~al~-~g~v  239 (282)
T 3qhy_B          170 GQTTV----PAEAQSGVDDVAG--GIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW--YSLALK-NGKV  239 (282)
T ss_dssp             STTSC----CGGGGSSEEEEEE--CSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS--CEEEEE-TTEE
T ss_pred             CCCCC----ceecCCCeEEEEe--cCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC--EEEEEE-CCEE
Confidence            21110    0111122323333  23333333 5899999975543222111111234666665433  223333 8888


Q ss_pred             EEc
Q 010470          507 CVW  509 (510)
Q Consensus       507 ~iw  509 (510)
                      +.|
T Consensus       240 ~~w  242 (282)
T 3qhy_B          240 IAW  242 (282)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            887

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.50  E-value=0.12  Score=54.82  Aligned_cols=31  Identities=32%  Similarity=0.335  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           91 SLITSLQEELTQIRDECSQLKTELEEKIKAL  121 (510)
Q Consensus        91 ~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~  121 (510)
                      ..+.+++++++.+++++..+.++.+.+.+.+
T Consensus       984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A          984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=96.49  E-value=0.14  Score=36.97  Aligned_cols=30  Identities=10%  Similarity=0.075  Sum_probs=15.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVE   75 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~   75 (510)
                      ....++..|+.+...+......+..++...
T Consensus         6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~   35 (101)
T 3u59_A            6 AIKKKMQMLKLDKENAIDRAEQAEADKKQA   35 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555655555544444444444333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.48  E-value=0.1  Score=61.17  Aligned_cols=24  Identities=13%  Similarity=-0.024  Sum_probs=15.8

Q ss_pred             HHHhhhhhhhcccchhhHhhcCcc
Q 010470           17 ALRKRHLVEEGAHAPAIIALSRPI   40 (510)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~   40 (510)
                      .+||++-+....|-+.+..|...+
T Consensus      1885 ~~~R~~yvTP~syLeli~~y~~ll 1908 (3245)
T 3vkg_A         1885 RQGRQNYVTPRHYLDFINQVVLLI 1908 (3245)
T ss_dssp             SSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HhCCcccCCHHHHHHHHHHHHHHH
Confidence            345555566777777777777666

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=96.27  E-value=0.089  Score=40.32  Aligned_cols=54  Identities=13%  Similarity=0.166  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           86 LQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMT  139 (510)
Q Consensus        86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~  139 (510)
                      ...++..+.++.+++..++.++..+..+++++.++++.++.+...++.++..++
T Consensus        77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444444444333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=96.25  E-value=0.22  Score=38.12  Aligned_cols=58  Identities=17%  Similarity=0.213  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           90 ESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEA  147 (510)
Q Consensus        90 ~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~  147 (510)
                      ......+.++++++..++..|..++..+...++.++.+...++.++..++.+...++.
T Consensus        74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A           74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666666677777777777666666666666666666666666666655543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.12  E-value=0.23  Score=35.73  Aligned_cols=48  Identities=13%  Similarity=0.174  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAK  143 (510)
Q Consensus        96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~  143 (510)
                      ++..+...+.+..++..++..+.+.+..+..+++.+...+......++
T Consensus        28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe   75 (101)
T 3u1c_A           28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL   75 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444555555555555555555555544444444433

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.88  E-value=1.3  Score=42.32  Aligned_cols=232  Identities=13%  Similarity=0.051  Sum_probs=115.1

Q ss_pred             cceEEEEEecCCC-EEEEeeCCCeEEEEeCCCCc---ceeccc---------ccccceeEEEEecC---CCEEEEE-eC-
Q 010470          226 GGCASILFEYNSA-RLISGGQDKSIKLWDTNTGS---LSSTLY---------GCLGSVLDLAITHD---NRSVIAA-SS-  287 (510)
Q Consensus       226 ~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~l~~~-~~-  287 (510)
                      .....|+|.|+|. .|+++...|.|++++.....   .+..+.         ........|+|+|+   +.+|++. +. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3567899999996 56666778999999754321   111111         11457789999996   3334333 21 


Q ss_pred             -C----------CeEEEEEcCCC----------CeeEeec--CCCCceEEEEEecCCCCEEEEEeCC-------------
Q 010470          288 -S----------NNLYVWDVNSG----------RVRHTLT--GHTDKVCAVDVSKISSRHVVSAAYD-------------  331 (510)
Q Consensus       288 -d----------~~i~iwd~~~~----------~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~~~d-------------  331 (510)
                       +          ..|.-|.+..+          +.+..+.  ........|.|.| ++.+.++.+..             
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~  172 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDMEEMDGL  172 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHHHCTTC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCCccccccCc
Confidence             1          14555665421          1222222  2223467899999 67766665543             


Q ss_pred             ----CcEEEEECCCC------eE-------------eeee-eecCceeEEEEcCC-----CC-EEEEecCCC----cEEE
Q 010470          332 ----RTLKVWDLHKG------YC-------------VNTI-IFHSNCNALAFSMD-----GQ-TIFSGHIDG----NLRL  377 (510)
Q Consensus       332 ----g~i~iwd~~~~------~~-------------~~~~-~~~~~i~~i~~~~~-----~~-~l~~~~~dg----~i~i  377 (510)
                          |.|.-.|....      ..             ...+ ..+.++..++|+|.     |. +++.+...|    .-.|
T Consensus       173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei  252 (463)
T 2wg3_C          173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARI  252 (463)
T ss_dssp             CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred             CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence                23444454431      00             0111 23345788999986     33 444443212    1233


Q ss_pred             EECCCC------ceeeeecccccccEEEEEEcCC-------CCEEEEEecCCcEEEEEcCCcee---eeEe-ecC----C
Q 010470          378 WDIQTG------KLLSEVAAHSLAAVTSISLSRS-------GNIILTSGRDNLHNLFDIRSLEV---CGSL-RAT----G  436 (510)
Q Consensus       378 ~d~~~~------~~~~~~~~~~~~~i~~i~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~---~~~~-~~~----~  436 (510)
                      ..+..+      .++..+..+....+..+.|-..       |.+|+. ...+.|....+.....   ...+ ...    .
T Consensus       253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~-~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~  331 (463)
T 2wg3_C          253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG-DRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR  331 (463)
T ss_dssp             EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE-ETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred             eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe-cCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence            333322      2333443322246777777532       344544 4446666665543211   1111 110    0


Q ss_pred             CeeecCceeEEEcCCCCEEEEEc
Q 010470          437 NRVASNWSRSCISPDESYVAAGS  459 (510)
Q Consensus       437 ~~~~~~~~~~~~s~~~~~l~~~~  459 (510)
                      ......+..+.+.|||.++++..
T Consensus       332 ~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          332 GYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             SCCCSEEEEEEECTTCCEEEEEE
T ss_pred             ccccCcceEEEECCCCCEEEEec
Confidence            11122345688999998877765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.85  E-value=0.89  Score=40.20  Aligned_cols=239  Identities=14%  Similarity=0.086  Sum_probs=120.4

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  306 (510)
                      .|..++.... ..++. . ||.|..|-.+..-.+.........|..++...+.. ++. . ||.|+.|-....-.+-.-.
T Consensus        25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            4666655432 22333 4 89999997654322221112234667777653332 333 4 8999999765422111111


Q ss_pred             CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 010470          307 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL  385 (510)
Q Consensus       307 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~  385 (510)
                      .-...|..++...   .+.+.-. +|.|+.|-.... +.-........+..++...+  +.+.-. ||.|+.|-......
T Consensus        99 ~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gq  171 (282)
T 3qhy_B           99 EARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQ  171 (282)
T ss_dssp             GGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTST
T ss_pred             ccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCC
Confidence            1234677777643   4444445 999999976542 21111112244666665432  223233 68999997643221


Q ss_pred             eeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470          386 LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY  465 (510)
Q Consensus       386 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  465 (510)
                      +. +.......|..|+...+.. ++.  .+|.++.|-......+.    ........+..++...... ++ -. ||.|+
T Consensus       172 lg-~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg----~p~~~~~~v~~i~~G~~h~-~a-l~-~g~v~  240 (282)
T 3qhy_B          172 TT-VPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT----VPTEALSGVSAIASGEWYS-LA-LK-NGKVI  240 (282)
T ss_dssp             TS-CCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC----CCGGGGSSCCEEEECSSCE-EE-EE-TTEEE
T ss_pred             CC-CceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC----CCcccCCCceEEEcCCCEE-EE-EE-CCEEE
Confidence            11 1111124577776654322 233  58999999765422111    0111112333344333322 23 33 89999


Q ss_pred             EEeCCCcceeecccccCcCEEEEEEeCC
Q 010470          466 IWSISKADIVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       466 iwd~~~~~~~~~~~~~~~~v~~~~~~~~  493 (510)
                      .|-.....++..    ...|.+++-.+.
T Consensus       241 ~wG~n~~gq~~v----~~~v~~iaaG~~  264 (282)
T 3qhy_B          241 AWGSSRTAPSSV----QSGVSSIEAGPN  264 (282)
T ss_dssp             EESTTCCCCGGG----SSCEEEEEECSS
T ss_pred             EecCCCCccccC----CCCcEEEEECcC
Confidence            997665444433    235777776554

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=95.84  E-value=0.33  Score=35.15  Aligned_cols=69  Identities=19%  Similarity=0.218  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           86 LQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKMLVD  154 (510)
Q Consensus        86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~  154 (510)
                      ..+....+..|+.++.+++.....+...+..+.+.+..|....-..-..++.++.++..+-+.+.++..
T Consensus        30 ~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~   98 (111)
T 2v66_B           30 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLES   98 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            334455666777777777777777777777777777766666666666677777777666555555443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=95.74  E-value=0.26  Score=33.81  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          109 QLKTELEEKIKALELVVSENQQIRAQLEEMTMKA  142 (510)
Q Consensus       109 ~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~  142 (510)
                      ++..++..+.+.+..+..+++.+...+...+.++
T Consensus        38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL   71 (81)
T 1ic2_A           38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.71  E-value=0.055  Score=58.50  Aligned_cols=27  Identities=11%  Similarity=0.081  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 010470           47 WKEKADNLETELQQCYKAQSRLSEQLV   73 (510)
Q Consensus        47 ~~~~~~~l~~el~~~~k~~~~~~~~l~   73 (510)
                      +++++..++..+........++..++.
T Consensus       862 L~~eL~el~~~L~~le~~l~ele~~l~  888 (1184)
T 1i84_S          862 KDEELQRTKERQQKAEAELKELEQKHT  888 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444433333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.70  E-value=0.55  Score=36.75  Aligned_cols=12  Identities=25%  Similarity=0.127  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 010470           89 KESLITSLQEEL  100 (510)
Q Consensus        89 ~~~~i~~l~~~l  100 (510)
                      +++.+..++..+
T Consensus        67 Leke~~~LQa~L   78 (168)
T 3o0z_A           67 TDKDYYQLQAIL   78 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=95.69  E-value=0.39  Score=34.98  Aligned_cols=21  Identities=14%  Similarity=0.270  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhh
Q 010470           48 KEKADNLETELQQCYKAQSRL   68 (510)
Q Consensus        48 ~~~~~~l~~el~~~~k~~~~~   68 (510)
                      ...+..|++|+..+++.....
T Consensus        59 QKEi~~Lrae~~~~QRn~~K~   79 (167)
T 4gkw_A           59 QKEIGKLRAELGTAQRNLEKA   79 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHH
Confidence            344455555555444444444

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=95.63  E-value=0.29  Score=34.45  Aligned_cols=61  Identities=15%  Similarity=0.165  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           82 SKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA  142 (510)
Q Consensus        82 ~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~  142 (510)
                      +.+..+...-++..|+..++.+++...++..++.+..++.+.++...+.++.++..+...+
T Consensus        21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L   81 (103)
T 4h22_A           21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL   81 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444455555566666666666666677777777766666666666666666655544

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=95.59  E-value=0.38  Score=34.14  Aligned_cols=88  Identities=17%  Similarity=0.175  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           51 ADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQ  130 (510)
Q Consensus        51 ~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~  130 (510)
                      +..++.+|..+......+-+.|..       +.+....+...|..++.+..++..+-.+.-.++.....+...+.++++.
T Consensus         6 ~~~l~~eL~~l~~eE~~L~~eL~~-------lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~S   78 (96)
T 3q8t_A            6 SEQLQRELKELALEEERLIQELED-------VEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKS   78 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666655555555444433       2233333344444444444444444444445555555555556666666


Q ss_pred             HHHHHHHHHHHHHHH
Q 010470          131 IRAQLEEMTMKAKNA  145 (510)
Q Consensus       131 l~~~~~~~~~~~~~~  145 (510)
                      +..++......+..+
T Consensus        79 l~~q~~~~~~qLdkL   93 (96)
T 3q8t_A           79 VENQMRYAQMQLDKL   93 (96)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            666665555555444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.41  E-value=1  Score=53.13  Aligned_cols=27  Identities=11%  Similarity=0.101  Sum_probs=12.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQL   72 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l   72 (510)
                      .++.++..++.+|.+..+...++-+++
T Consensus      1938 ~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A         1938 DLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555544443333333333

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=95.40  E-value=2.7  Score=42.64  Aligned_cols=237  Identities=11%  Similarity=0.088  Sum_probs=122.2

Q ss_pred             eEEEE-EecCCCEEEEeeC-----CCeEEEEeCCCCcceec-cccc-cc------ceeEEEEecCCCEEEEEe-------
Q 010470          228 CASIL-FEYNSARLISGGQ-----DKSIKLWDTNTGSLSST-LYGC-LG------SVLDLAITHDNRSVIAAS-------  286 (510)
Q Consensus       228 v~~~~-~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~-~~~~-~~------~v~~~~~~~~~~~l~~~~-------  286 (510)
                      ...+. ++|++++++.+-+     -..|+++|+.+++.+.. +... .+      ....++|..++..+++..       
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence            44555 8899998765422     23699999999987642 2200 00      113458874444444321       


Q ss_pred             ---CCCeEEEEEcCCCC--eeEeecCCCCce-EEEEEecCCCC----EEEEEeC---CCcEEEEECCC--CeEeeeeeec
Q 010470          287 ---SSNNLYVWDVNSGR--VRHTLTGHTDKV-CAVDVSKISSR----HVVSAAY---DRTLKVWDLHK--GYCVNTIIFH  351 (510)
Q Consensus       287 ---~d~~i~iwd~~~~~--~~~~~~~~~~~v-~~i~~~~~~~~----~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~  351 (510)
                         ....|+.|.+-+..  -...+.+....+ .+...+++...    .+++.+.   ...+.+.|...  +.. ..+..+
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~  289 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMP  289 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSC
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecC
Confidence               12468888876543  223344333333 33444553332    3444432   24566767653  332 233333


Q ss_pred             CceeEEEEcCCCCEEEEe----------cCCCcEEEEECCCCc-------eeee-ecccccccEEEEEEcCCCCEEEEEe
Q 010470          352 SNCNALAFSMDGQTIFSG----------HIDGNLRLWDIQTGK-------LLSE-VAAHSLAAVTSISLSRSGNIILTSG  413 (510)
Q Consensus       352 ~~i~~i~~~~~~~~l~~~----------~~dg~i~i~d~~~~~-------~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~  413 (510)
                      .... +..++++.+++..          ...+.|...|+.++.       .... +.......+..+.+..+ .++++..
T Consensus       290 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~  367 (711)
T 4hvt_A          290 SDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY  367 (711)
T ss_dssp             TTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred             Ccce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence            3322 2334456555532          146779999987642       1222 33333357888888875 5666666


Q ss_pred             cCC--cEEEEEcCCce-eeeE-eecCCCeeecCceeEEEcCCCCE-EEEEcC---CCeEEEEeCC
Q 010470          414 RDN--LHNLFDIRSLE-VCGS-LRATGNRVASNWSRSCISPDESY-VAAGSA---DGSVYIWSIS  470 (510)
Q Consensus       414 ~d~--~i~i~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~---dg~i~iwd~~  470 (510)
                      .++  .+.++|+.++. .... +.....   ..+....+++++.. +++.+.   -+.++.+|+.
T Consensus       368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~---~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          368 DNVVAKVVTFTLENEQWTKPVVLKLPYQ---NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             ETTEEEEEEECEETTEECCCEEECCCST---TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             ECCEEEEEEEECCCCceEEEeccCCCCC---eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            676  46677766554 1222 222211   11222445566654 443332   3678888875

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.40  E-value=1.6  Score=40.14  Aligned_cols=166  Identities=11%  Similarity=0.094  Sum_probs=95.3

Q ss_pred             cEEEEECCCC--eEeeeeeecC-------ceeEEEEc---CC----CCEEE-EecCCCcEEEEECCCCceeeeec----c
Q 010470          333 TLKVWDLHKG--YCVNTIIFHS-------NCNALAFS---MD----GQTIF-SGHIDGNLRLWDIQTGKLLSEVA----A  391 (510)
Q Consensus       333 ~i~iwd~~~~--~~~~~~~~~~-------~i~~i~~~---~~----~~~l~-~~~~dg~i~i~d~~~~~~~~~~~----~  391 (510)
                      .|.+||+.++  +.++.+..+.       ..+.+.+.   |.    +.+++ +-...+.|.|||+.+++.-+...    .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            6778888888  8888776642       36777777   22    23333 44456789999999886554331    0


Q ss_pred             cc-------------cccEEEEEEcCC----CCEEEEEecCCcEEEEEcC-----CceeeeEee--cCCCeeecCceeEE
Q 010470          392 HS-------------LAAVTSISLSRS----GNIILTSGRDNLHNLFDIR-----SLEVCGSLR--ATGNRVASNWSRSC  447 (510)
Q Consensus       392 ~~-------------~~~i~~i~~~~~----~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~--~~~~~~~~~~~~~~  447 (510)
                      ..             ...+..|+++|+    ++.|+.....+. ++|.+.     +......+.  +...+ .+.-...+
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~-~s~~~~~~  281 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGK-YNDAIALA  281 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCT-TCCEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCC-CCCcceEE
Confidence            00             136888999998    777776665542 233332     221111111  11110 01112256


Q ss_pred             Ec-CCCCEEEEEcCCCeEEEEeCCC-c---ceeeccc-c-cCcCEEEEEEeCCCCcEEEe
Q 010470          448 IS-PDESYVAAGSADGSVYIWSISK-A---DIVRTLK-E-HTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       448 ~s-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~  500 (510)
                      ++ .+|.++++--..+.|..|+..+ .   .....+. . .-..+.++.+.++|.+.+..
T Consensus       282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            75 6788888888888999999765 1   1112221 1 22346788887777644444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.38  E-value=0.69  Score=35.77  Aligned_cols=78  Identities=15%  Similarity=0.202  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           49 EKADNLETELQQCYKAQSRLSEQLVVEVAESRSS-KALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVS  126 (510)
Q Consensus        49 ~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~  126 (510)
                      .....|..++.+-...+............+++.+ -.++++..+++..-+.+-..++.+..+|..++......+..++.
T Consensus        58 ~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~  136 (154)
T 2ocy_A           58 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL  136 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444433333333333333333333332 33344444444444444444444444444444444433333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.34  E-value=0.06  Score=58.25  Aligned_cols=37  Identities=16%  Similarity=0.105  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHH
Q 010470           47 WKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSK   83 (510)
Q Consensus        47 ~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~   83 (510)
                      ...++..+++++.++......+.+.+.+.......++
T Consensus       855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le  891 (1184)
T 1i84_S          855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLC  891 (1184)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666655555555444444443333333

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=95.33  E-value=1.8  Score=40.29  Aligned_cols=222  Identities=15%  Similarity=0.181  Sum_probs=111.2

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCC-C-------e---eEeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC---
Q 010470          278 DNRSVIAASSSNNLYVWDVNSG-R-------V---RHTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG---  342 (510)
Q Consensus       278 ~~~~l~~~~~d~~i~iwd~~~~-~-------~---~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~---  342 (510)
                      .....++...||.|+.|-.... +       .   ...+.. ....+..+.++. ...+.+....||.|+.|-....   
T Consensus        61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqL  139 (389)
T 3kci_A           61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKL  139 (389)
T ss_dssp             ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTT
T ss_pred             CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcC
Confidence            3455666778889999864321 1       0   111111 123344556655 5666777778999999965321   


Q ss_pred             -------eE-eeeeeecC--ceeEEEEcCCCCEEEEecCCCcEEEEECCC-Cc----------eeeeecccccccEEEEE
Q 010470          343 -------YC-VNTIIFHS--NCNALAFSMDGQTIFSGHIDGNLRLWDIQT-GK----------LLSEVAAHSLAAVTSIS  401 (510)
Q Consensus       343 -------~~-~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~----------~~~~~~~~~~~~i~~i~  401 (510)
                             .. ...+....  .|..++.  ...+.++-..+|.|+.|-... ++          ....+.......|..++
T Consensus       140 G~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia  217 (389)
T 3kci_A          140 GHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA  217 (389)
T ss_dssp             CSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred             CCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE
Confidence                   01 11111111  3444444  345556667789999996432 10          11122222224566666


Q ss_pred             EcCCCCEEEEEecCCcEEEEEcCCcee-----------eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          402 LSRSGNIILTSGRDNLHNLFDIRSLEV-----------CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       402 ~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      ......+.++-..+|.|+.|-....-.           ...+.....   ..+  ..++....+.++-..+|.|+.|-..
T Consensus       218 ~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~---~~v--~~v~~G~~hs~alt~~G~v~~wG~n  292 (389)
T 3kci_A          218 CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG---LGV--VKVECGSQFSVALTKSGAVYTWGKG  292 (389)
T ss_dssp             ECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT---SCE--EEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC---CcE--EEEeCCCCEEEEEeCCCeEEEEeCC
Confidence            654445667777889999996542111           000110000   011  2233334444555678889999654


Q ss_pred             Ccce-----------eecccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          471 KADI-----------VRTLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       471 ~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ....           ...+.. ....|..++..  ....+....||.|+.|
T Consensus       293 ~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w  341 (389)
T 3kci_A          293 DYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW  341 (389)
T ss_dssp             GGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred             CCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence            3111           011111 12346555543  2344455677888777

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.3  Score=31.17  Aligned_cols=55  Identities=22%  Similarity=0.154  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           92 LITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAE  146 (510)
Q Consensus        92 ~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~  146 (510)
                      .+..|++++..-+.++..|++.+.-..+..+.|.+|.-.+..+.+-++.++..++
T Consensus        19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~   73 (75)
T 3a7o_A           19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK   73 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence            4455666666666667777777776667777777777777776666666665543

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=95.24  E-value=0.31  Score=32.48  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=16.4

Q ss_pred             HhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           64 AQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQI  103 (510)
Q Consensus        64 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l  103 (510)
                      ++.-+.+.|...+.........+++.++...+|..++..+
T Consensus        25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l   64 (81)
T 1wt6_A           25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL   64 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443333333333344333333333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=95.08  E-value=0.33  Score=45.16  Aligned_cols=38  Identities=16%  Similarity=0.332  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          102 QIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMT  139 (510)
Q Consensus       102 ~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~  139 (510)
                      +|+..+..|+.+++.....+..|+.-++.++.++..||
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE  151 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE  151 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455554444444444444444443333333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=95.03  E-value=0.66  Score=33.56  Aligned_cols=10  Identities=20%  Similarity=0.278  Sum_probs=0.0

Q ss_pred             HHHHHHHHHH
Q 010470          143 KNAEAENKML  152 (510)
Q Consensus       143 ~~~~~~~~~~  152 (510)
                      ..+..+|..+
T Consensus        94 ~rLQ~eNd~L  103 (112)
T 1x79_B           94 VRLQKDNDSL  103 (112)
T ss_dssp             ----------
T ss_pred             HHHHhhccch
Confidence            3333444433

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=95.00  E-value=0.66  Score=33.40  Aligned_cols=50  Identities=24%  Similarity=0.290  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNA  145 (510)
Q Consensus        96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~  145 (510)
                      +...+...+.+..++..++..+.+.+..+..+.+.+...+......++..
T Consensus        28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~   77 (101)
T 3u59_A           28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA   77 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444555555555555555555555555555555555444444333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.95  E-value=0.89  Score=34.61  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           91 SLITSLQEELTQIRDECSQLKTELEEKIKALELVVSE  127 (510)
Q Consensus        91 ~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e  127 (510)
                      ..|..+..++.+++.+......+++.+...+..|..|
T Consensus        84 ~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~E  120 (131)
T 3tnu_A           84 EMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQE  120 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444433333333

>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*

Probab=94.82  E-value=1.8  Score=40.09  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHH
Q 010470           49 EKADNLETELQQCYKAQSRLSEQ   71 (510)
Q Consensus        49 ~~~~~l~~el~~~~k~~~~~~~~   71 (510)
                      .+.+++++||.++.+...+..++
T Consensus       321 r~~e~a~ael~~a~k~~a~~~er  343 (551)
T 2b5u_A          321 RNYERARAELNQANEDVARNQER  343 (551)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444433

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.46  E-value=3.5  Score=39.31  Aligned_cols=104  Identities=8%  Similarity=0.015  Sum_probs=60.6

Q ss_pred             cceeEEEEecCCC-EEEEEeCCCeEEEEEcCCCC---eeEeec---------CCCCceEEEEEecC---CCCEEEEEeC-
Q 010470          268 GSVLDLAITHDNR-SVIAASSSNNLYVWDVNSGR---VRHTLT---------GHTDKVCAVDVSKI---SSRHVVSAAY-  330 (510)
Q Consensus       268 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~---------~~~~~v~~i~~~~~---~~~~l~s~~~-  330 (510)
                      ...+.|+|.|++. .++++...|.|++++.....   .+..+.         ........|+++|.   ++.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3457899999996 57777888999999754221   222221         11356788999983   2333333221 


Q ss_pred             -C----------CcEEEEECCC----------CeEeeeeee---cCceeEEEEcCCCCEEEEecC
Q 010470          331 -D----------RTLKVWDLHK----------GYCVNTIIF---HSNCNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       331 -d----------g~i~iwd~~~----------~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~  371 (510)
                       +          ..|.-|.+..          .+.+..+..   .+....|.|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          1444465532          123333322   234678999999987776443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=94.19  E-value=1.2  Score=41.64  Aligned_cols=39  Identities=15%  Similarity=0.181  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          109 QLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEA  147 (510)
Q Consensus       109 ~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~  147 (510)
                      +|+.++..+++.+......+..|+..++.+..+++++|.
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv  152 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV  152 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444443334444444444444444444433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=94.11  E-value=1.1  Score=32.00  Aligned_cols=9  Identities=33%  Similarity=0.612  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 010470           51 ADNLETELQ   59 (510)
Q Consensus        51 ~~~l~~el~   59 (510)
                      +..|...|+
T Consensus        26 i~~L~~~L~   34 (110)
T 2v4h_A           26 LEDLRQQLQ   34 (110)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.06  E-value=0.86  Score=30.68  Aligned_cols=12  Identities=17%  Similarity=0.069  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHHH
Q 010470          119 KALELVVSENQQ  130 (510)
Q Consensus       119 ~~~~~l~~e~~~  130 (510)
                      ..+..+..+.+.
T Consensus        34 ekN~~L~~e~~e   45 (81)
T 2jee_A           34 EKNNSLSQEVQN   45 (81)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=93.95  E-value=3  Score=36.57  Aligned_cols=198  Identities=9%  Similarity=0.067  Sum_probs=112.0

Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEE---EEcCCCCeeEeecCCCCceEEEEEecC-CCCEEEEEeCCCcEEEEECCCC
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYV---WDVNSGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~  342 (510)
                      .+.+..+.......+|+.-++.|.++-   |++..+.....+. ....|..+.. +. +..+++..+.+|.++...+..-
T Consensus        23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~  100 (276)
T 3no0_A           23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF  100 (276)
T ss_dssp             CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred             CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence            345555555555666777777787664   3333221111132 3556666644 32 4578999999999999986542


Q ss_pred             ------eEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCCCCEE
Q 010470          343 ------YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRSGNII  409 (510)
Q Consensus       343 ------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l  409 (510)
                            .....+.....+..+........++..+..|.+..++...       ..-+.-+.......|.++...+++..+
T Consensus       101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l  180 (276)
T 3no0_A          101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL  180 (276)
T ss_dssp             TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred             hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence                  2222233334455555555666788888899988887522       111222222222566666655667788


Q ss_pred             EEEecCCcEEEEEcCCcee-------eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEE--EeCCC
Q 010470          410 LTSGRDNLHNLFDIRSLEV-------CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYI--WSISK  471 (510)
Q Consensus       410 ~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i--wd~~~  471 (510)
                      +..+..|.++...+.....       +..+ .....+.    .+....+...++..+.+|.+..  ++...
T Consensus       181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv----~~~~~~~~~~i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLV----DLIPIKEEVELLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEE----EEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred             EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEE----EEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence            8889999998888753221       2222 1111111    1222233445666777888777  77543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=93.92  E-value=3.1  Score=36.54  Aligned_cols=193  Identities=10%  Similarity=0.027  Sum_probs=109.7

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEE---EeCCCCcceecccccccceeEEEEec--CCCEEEEEeCCCeEEEEEcCCCC
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKL---WDTNTGSLSSTLYGCLGSVLDLAITH--DNRSVIAASSSNNLYVWDVNSGR  300 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~  300 (510)
                      +.+..+.......+|+.-+..|.++-   |++..+.....+ .....|..+.. +  +..+++..+.+|.++-..+..-.
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~  101 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE  101 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence            34555555555556766777887664   344332211112 23456666644 4  56789999999999999876532


Q ss_pred             ------eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC---------CeEeeeeeecCceeEEEEcCCCCE
Q 010470          301 ------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK---------GYCVNTIIFHSNCNALAFSMDGQT  365 (510)
Q Consensus       301 ------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~i~~i~~~~~~~~  365 (510)
                            ....+. ..+.+..+.... ....++..+..|.+..++...         |...-.+.....+..+...+++..
T Consensus       102 ~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~  179 (276)
T 3no0_A          102 YKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPY  179 (276)
T ss_dssp             TCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSE
T ss_pred             hhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCE
Confidence                  112233 234555555554 456788888899988887532         222222223344555555556678


Q ss_pred             EEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEE--EEcC
Q 010470          366 IFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL--FDIR  424 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i--~d~~  424 (510)
                      ++..+..|.+....+..       ++-+..+ ... +.+..+....+...++..+.+|.+..  ++..
T Consensus       180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~-~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTK-DTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSS-SCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCC-CcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            88888999988887632       2223333 122 34444433333445556666666666  6554

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=93.79  E-value=3.6  Score=37.00  Aligned_cols=190  Identities=8%  Similarity=0.034  Sum_probs=109.1

Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCc----ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC---------CCe
Q 010470          235 YNSARLISGGQDKSIKLWDTNTGS----LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS---------GRV  301 (510)
Q Consensus       235 ~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~  301 (510)
                      |+..++++.+.+|.|+--.+...+    ....+.. ...+..+........++..+..|.++-+....         |.+
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~   81 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence            456678888999998877543211    1111222 34455555555677788888888877665521         222


Q ss_pred             eEee-c-CCCCceEEEEEecC--CCCEEEEEeCCCcEEEEECCC--------CeEeeeeeecCceeEEEEcCCCCEEEEe
Q 010470          302 RHTL-T-GHTDKVCAVDVSKI--SSRHVVSAAYDRTLKVWDLHK--------GYCVNTIIFHSNCNALAFSMDGQTIFSG  369 (510)
Q Consensus       302 ~~~~-~-~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~i~~i~~~~~~~~l~~~  369 (510)
                      +..+ . .....|.++...+.  ++.+++..+.+|.++...+..        |.....+.....+..+........++..
T Consensus        82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~  161 (323)
T 1wp5_A           82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV  161 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred             hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence            1111 1 12345655433331  256788899999999988742        2222222323444444444456677888


Q ss_pred             cCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCCCC-EEEEEecCCcEEEEEcCC
Q 010470          370 HIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       370 ~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~i~d~~~  425 (510)
                      +.+|.+..|....       ..-+.-+.......|.++...+++. .+++.+..|..+..++..
T Consensus       162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e  225 (323)
T 1wp5_A          162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             eCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence            8889988887632       1222223323324566665444445 788888888888777653

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=93.75  E-value=1.1  Score=30.73  Aligned_cols=26  Identities=12%  Similarity=0.136  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010470           47 WKEKADNLETELQQCYKAQSRLSEQL   72 (510)
Q Consensus        47 ~~~~~~~l~~el~~~~k~~~~~~~~l   72 (510)
                      +..++..++.+...+.........++
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l   29 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADK   29 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555444444443333

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=93.60  E-value=3.9  Score=36.66  Aligned_cols=189  Identities=8%  Similarity=0.084  Sum_probs=111.9

Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCccee---------cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC-------
Q 010470          235 YNSARLISGGQDKSIKLWDTNTGSLSS---------TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS-------  298 (510)
Q Consensus       235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------  298 (510)
                      ++..++++.+.+|.|+-..+.......         .+. ....+..+........++..+..|.++-+....       
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            456678888999999887664332111         112 234455555555667788888899887776532       


Q ss_pred             --CCe---eEeecCCCCceEEEEEecC--CCCEEEEEeCCCcEEEEECCC-------CeEeeeeeecCceeEEEEcCCCC
Q 010470          299 --GRV---RHTLTGHTDKVCAVDVSKI--SSRHVVSAAYDRTLKVWDLHK-------GYCVNTIIFHSNCNALAFSMDGQ  364 (510)
Q Consensus       299 --~~~---~~~~~~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~i~~i~~~~~~~  364 (510)
                        |.+   ...+. ....|.++...+.  ...+++..+..|.++...+..       |.....+.....+..+.....+.
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence              111   11122 2344555543321  356788889999999987742       22222233334455555544566


Q ss_pred             EEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          365 TIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       365 ~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      .++..+.+|.+..+....       .+-+..+.......+.++...+++..+++.+..|..+.+++..
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            788888899998887642       1122222222235666666655667788888999988888754

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=93.57  E-value=1  Score=29.99  Aligned_cols=42  Identities=19%  Similarity=0.288  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEE  137 (510)
Q Consensus        96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~  137 (510)
                      +++++.+++..+.....++.+....+..|..|...++.++..
T Consensus        29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee   70 (81)
T 1wt6_A           29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL   70 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555554444444433

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=93.52  E-value=4.1  Score=36.72  Aligned_cols=262  Identities=12%  Similarity=0.077  Sum_probs=135.4

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcc-------eeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEEEc---CC------CC
Q 010470          238 ARLISGGQDKSIKLWDTNTGSL-------SSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVWDV---NS------GR  300 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~---~~------~~  300 (510)
                      ..+++.+.+|.|+--.+.+...       +..+. .....+..+........++.-++.|.++-...   ..      |.
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~   83 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ   83 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence            4677778888887655322110       11111 12345555555566677777788887665543   32      22


Q ss_pred             eeEee-c-CCCCceEEEEEecC--CCCEEEEEeCCCcEEEEECCC-------CeEeeeeeecCceeEEEEcCCCCEEEEe
Q 010470          301 VRHTL-T-GHTDKVCAVDVSKI--SSRHVVSAAYDRTLKVWDLHK-------GYCVNTIIFHSNCNALAFSMDGQTIFSG  369 (510)
Q Consensus       301 ~~~~~-~-~~~~~v~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~i~~i~~~~~~~~l~~~  369 (510)
                      ++..+ . .....|.++...+.  +..+++..+.+|.|+...+..       |.....+.....+..+........++..
T Consensus        84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~  163 (327)
T 3uc1_A           84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLV  163 (327)
T ss_dssp             EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEE
T ss_pred             EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEE
Confidence            22111 1 12455665544332  467899999999999987653       2222222333445555554556678888


Q ss_pred             cCCCcEEEEECC--CC----c---eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee-------eEee
Q 010470          370 HIDGNLRLWDIQ--TG----K---LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC-------GSLR  433 (510)
Q Consensus       370 ~~dg~i~i~d~~--~~----~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~  433 (510)
                      +..|.+..+...  .-    +   -+.-+.......|.++...+.+.+++..+..|.++.-.+......       ..+.
T Consensus       164 T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~  243 (327)
T 3uc1_A          164 SANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM  243 (327)
T ss_dssp             ETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC
T ss_pred             ECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE
Confidence            889998888765  21    1   111122222356777777667778999999999988876533221       1111


Q ss_pred             cC--CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee---------ecccccCcCEEEEEEeCC-CCcEEEee
Q 010470          434 AT--GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV---------RTLKEHTAPVLSCSWSGL-GKPLASAD  501 (510)
Q Consensus       434 ~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~~~~~~~-~~~l~s~~  501 (510)
                      ..  ...+.    .+....+...++..+.+|.+.-++...-...         ..+. ....|.++...+. ...+.+.+
T Consensus       244 l~~~~d~lv----~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~-~~d~vv~~~~~~~~~~~~~~~~  318 (327)
T 3uc1_A          244 YDRRRGRLV----GALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLG-EGDTLLAIARNAEESGDDNAVD  318 (327)
T ss_dssp             CCTTTCSEE----EEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCC-TTCCEEEEEECC----------
T ss_pred             ecCCCCeEE----EEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecC-CCCEEEEEEEcCCCcceEEEEe
Confidence            11  11111    1222334456666677888777775432221         1122 2345666665543 34455555


Q ss_pred             CCC
Q 010470          502 KNG  504 (510)
Q Consensus       502 ~dg  504 (510)
                      .+|
T Consensus       319 ~~g  321 (327)
T 3uc1_A          319 ANG  321 (327)
T ss_dssp             ---
T ss_pred             cCC
Confidence            554

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=93.41  E-value=0.6  Score=30.53  Aligned_cols=19  Identities=21%  Similarity=0.375  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010470          111 KTELEEKIKALELVVSENQ  129 (510)
Q Consensus       111 ~~~l~~~~~~~~~l~~e~~  129 (510)
                      +.++++....+..|+.+.|
T Consensus        46 Ek~L~ekd~eI~~LqseLD   64 (72)
T 3nmd_A           46 ELELDQKDELIQMLQNELD   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=93.32  E-value=1.5  Score=30.93  Aligned_cols=38  Identities=11%  Similarity=0.225  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          103 IRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTM  140 (510)
Q Consensus       103 l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~  140 (510)
                      ++.++..|+.+++.+..++..+..|++.+...+..+..
T Consensus        54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~   91 (93)
T 3s4r_A           54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE   91 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45555666666666666666666666666655555443

>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}

Probab=93.11  E-value=1.4  Score=30.18  Aligned_cols=9  Identities=22%  Similarity=0.390  Sum_probs=3.8

Q ss_pred             HHHHHHHHH
Q 010470           54 LETELQQCY   62 (510)
Q Consensus        54 l~~el~~~~   62 (510)
                      |+.+|+.++
T Consensus        23 Lq~qLT~Aq   31 (99)
T 3ni0_A           23 LQRQLTRTQ   31 (99)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            344444443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=93.01  E-value=2  Score=31.76  Aligned_cols=54  Identities=22%  Similarity=0.345  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           86 LQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMT  139 (510)
Q Consensus        86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~  139 (510)
                      ..+++....+-+..+.+|+..+.+|+.+++......+.+..|.+.|+.+++.+.
T Consensus        28 k~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~   81 (120)
T 3i00_A           28 KAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR   81 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455566666667777777777777766666666666666666665543

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=92.98  E-value=8.7  Score=38.93  Aligned_cols=219  Identities=11%  Similarity=0.052  Sum_probs=108.9

Q ss_pred             eEEE-EecCCCEEEEEeC-C----CeEEEEEcCCCCeeE-eec-CCCC------ceEEEEEecCCCCEEEEE--------
Q 010470          271 LDLA-ITHDNRSVIAASS-S----NNLYVWDVNSGRVRH-TLT-GHTD------KVCAVDVSKISSRHVVSA--------  328 (510)
Q Consensus       271 ~~~~-~~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~-~~~-~~~~------~v~~i~~~~~~~~~l~s~--------  328 (510)
                      ..+. ++|++++++.+-+ .    ..++++|+.+++.+. .+. .-..      ....++|.. ++.++++.        
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBC
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcC
Confidence            3444 7889888776532 2    379999999987653 122 0000      113447764 44444432        


Q ss_pred             --eCCCcEEEEECCCCeEe--eeeeecC-c-eeEEEEcCCCCE-----EEEec---CCCcEEEEECCC--Cceeeeeccc
Q 010470          329 --AYDRTLKVWDLHKGYCV--NTIIFHS-N-CNALAFSMDGQT-----IFSGH---IDGNLRLWDIQT--GKLLSEVAAH  392 (510)
Q Consensus       329 --~~dg~i~iwd~~~~~~~--~~~~~~~-~-i~~i~~~~~~~~-----l~~~~---~dg~i~i~d~~~--~~~~~~~~~~  392 (510)
                        +....|+.|.+-+...-  ..+.... . ..+...++++.+     +++.+   ....+++.|...  +. ...+..+
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~  289 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP  289 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence              12356888887654221  1222221 2 234555666662     33322   224567777653  33 2333333


Q ss_pred             ccccEEEEEEcCCCCEEEEE----------ecCCcEEEEEcCCce-------eeeE-eecCCCeeecCceeEEEcCCCCE
Q 010470          393 SLAAVTSISLSRSGNIILTS----------GRDNLHNLFDIRSLE-------VCGS-LRATGNRVASNWSRSCISPDESY  454 (510)
Q Consensus       393 ~~~~i~~i~~~~~~~~l~~~----------~~d~~i~i~d~~~~~-------~~~~-~~~~~~~~~~~~~~~~~s~~~~~  454 (510)
                      ....   +..++++.+++..          ...+.|...|+.++.       .... +......   .+..+.+..+ .+
T Consensus       290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~-~l  362 (711)
T 4hvt_A          290 SDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE---VFNFISTTKD-RV  362 (711)
T ss_dssp             TTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE---EEEEEEECSS-CE
T ss_pred             Ccce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC---eEEEEEEECC-EE
Confidence            2122   2234455555532          145678888887642       1122 2222111   1233566654 56


Q ss_pred             EEEEcCCC--eEEEEeCCCcc-eeec-cccc-CcCEEEEEEeCCCCcEE
Q 010470          455 VAAGSADG--SVYIWSISKAD-IVRT-LKEH-TAPVLSCSWSGLGKPLA  498 (510)
Q Consensus       455 l~~~~~dg--~i~iwd~~~~~-~~~~-~~~~-~~~v~~~~~~~~~~~l~  498 (510)
                      +++...+|  .|.++++.++. .... +... .+.+..+.+++++..++
T Consensus       363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~  411 (711)
T 4hvt_A          363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEAL  411 (711)
T ss_dssp             EEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEE
T ss_pred             EEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEE
Confidence            66666676  47777776664 2222 2211 24566667777766443

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=92.96  E-value=2.4  Score=40.54  Aligned_cols=29  Identities=17%  Similarity=0.094  Sum_probs=4.3

Q ss_pred             HHHHHHHHhhhhhhhcccchhhHhhcCcc
Q 010470           12 KHALKALRKRHLVEEGAHAPAIIALSRPI   40 (510)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (510)
                      -|-.+-|..|..-.+..+.++.....+|.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   34 (501)
T 1wle_A            6 HHHSSGLVPRGSATERQDRNLLYEHAREG   34 (501)
T ss_dssp             ------------------CCHHHHHHHTT
T ss_pred             cccccCCcccccccccchhhhhhhccCCc
Confidence            33344444444444444444443333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=92.89  E-value=2.6  Score=32.73  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEE  137 (510)
Q Consensus        96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~  137 (510)
                      +..++..+...+++.....+.+.+....|..+.+.+...+..
T Consensus        75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~  116 (155)
T 2efr_A           75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA  116 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444444444444444444444443333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=92.24  E-value=2.9  Score=31.70  Aligned_cols=27  Identities=11%  Similarity=0.064  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           81 SSKALLQEKESLITSLQEELTQIRDEC  107 (510)
Q Consensus        81 ~~~~~~~~~~~~i~~l~~~l~~l~~~~  107 (510)
                      .+++.++.++.++..++.....++..+
T Consensus        42 elrr~iq~L~~el~~l~~~~~sLE~~l   68 (131)
T 3tnu_A           42 ELRRTMQNLEIELQSQLSMKASLENSL   68 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            334444444444443333333333333

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=92.23  E-value=6.4  Score=36.14  Aligned_cols=39  Identities=13%  Similarity=0.297  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          101 TQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMT  139 (510)
Q Consensus       101 ~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~  139 (510)
                      ++|+.++.-|+..++.....+..|+.-++.++.++..||
T Consensus       114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE  152 (491)
T 1m1j_A          114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLE  152 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555555555444444444444444444443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=91.90  E-value=6.9  Score=35.24  Aligned_cols=197  Identities=9%  Similarity=0.021  Sum_probs=111.4

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEE---EeCCCC------cceeccc--ccccceeEEEEec---CCCEEEEEeCCCeEE
Q 010470          227 GCASILFEYNSARLISGGQDKSIKL---WDTNTG------SLSSTLY--GCLGSVLDLAITH---DNRSVIAASSSNNLY  292 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~i---wd~~~~------~~~~~~~--~~~~~v~~~~~~~---~~~~l~~~~~d~~i~  292 (510)
                      .+..+........|+.-+..|.++-   |++...      .++..+.  .....|.++...+   +..+++..+.+|.++
T Consensus        43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK  122 (327)
T 3uc1_A           43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVK  122 (327)
T ss_dssp             CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred             EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence            4555544455556666666776554   444432      2221111  1234555554433   578999999999999


Q ss_pred             EEEcCCCC-------eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC--C---------CeEeeeeeecCce
Q 010470          293 VWDVNSGR-------VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH--K---------GYCVNTIIFHSNC  354 (510)
Q Consensus       293 iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~--~---------~~~~~~~~~~~~i  354 (510)
                      -..+..-.       ....+.. .+.+..+.... ....++..+..|.+..+...  .         |...-.+.....+
T Consensus       123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~V  200 (327)
T 3uc1_A          123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRL  200 (327)
T ss_dssp             EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCE
T ss_pred             EeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEE
Confidence            98875422       1222333 34555555544 45677778889999888776  2         1111122223446


Q ss_pred             eEEEEcCCCCEEEEecCCCcEEEEECCC-------Cceeeeecccc-cccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          355 NALAFSMDGQTIFSGHIDGNLRLWDIQT-------GKLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       355 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      .++...+.+..++..+..|.++.-.+..       ++-+..+.... .+.+..+....+...++..+.+|.+.-++...
T Consensus       201 v~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          201 LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             EEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            6666666677888899999988876532       12222222211 13454444444455666667777777776643

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.86  E-value=2.3  Score=29.74  Aligned_cols=11  Identities=18%  Similarity=0.431  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHH
Q 010470           93 ITSLQEELTQI  103 (510)
Q Consensus        93 i~~l~~~l~~l  103 (510)
                      ...+..+++.|
T Consensus        49 ~~~ie~ElEeL   59 (97)
T 2eqb_B           49 ADKLNKEVEDL   59 (97)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333344333

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=91.83  E-value=7.7  Score=35.63  Aligned_cols=190  Identities=14%  Similarity=0.078  Sum_probs=110.4

Q ss_pred             ecCCCEEEEeeCCCeEEEEeCCCC---------cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC------
Q 010470          234 EYNSARLISGGQDKSIKLWDTNTG---------SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS------  298 (510)
Q Consensus       234 s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------  298 (510)
                      -|+..++++.+.+|.|+--.+.+.         .....+. ....+..+........++..+..|.++-+....      
T Consensus         4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r   82 (370)
T 3l6v_A            4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS   82 (370)
T ss_dssp             CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence            367778999999999987654321         1111222 245566666666677788888888877665421      


Q ss_pred             ---CCeeEe---ecCCCCceEEEEEec--CCCCEEEEEeCCCcEEEEECCC-------CeEeeeeeecCceeEEEEcCCC
Q 010470          299 ---GRVRHT---LTGHTDKVCAVDVSK--ISSRHVVSAAYDRTLKVWDLHK-------GYCVNTIIFHSNCNALAFSMDG  363 (510)
Q Consensus       299 ---~~~~~~---~~~~~~~v~~i~~~~--~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~i~~i~~~~~~  363 (510)
                         |.++..   +. ....|.++...+  ..+.+++.++..|.++...+..       |.....+.....+..+......
T Consensus        83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~  161 (370)
T 3l6v_A           83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD  161 (370)
T ss_dssp             TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred             ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence               222211   22 345566554432  1356899999999999987642       2222222223344444444455


Q ss_pred             CEEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcC--------------------------------
Q 010470          364 QTIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSR--------------------------------  404 (510)
Q Consensus       364 ~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~--------------------------------  404 (510)
                      ..++..+.+|.+..|+...       ..-+.-+.......|.++...+                                
T Consensus       162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~  241 (370)
T 3l6v_A          162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVA  241 (370)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC------------------------------
T ss_pred             ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccc
Confidence            6777788889888887532       1112222222224555554443                                


Q ss_pred             ---CCCEEEEEecCCcEEEEEcCC
Q 010470          405 ---SGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       405 ---~~~~l~~~~~d~~i~i~d~~~  425 (510)
                         ++..+++.+..|..+...+..
T Consensus       242 ~~~~~~~il~vTe~G~gKrt~~~e  265 (370)
T 3l6v_A          242 DNGDVAYILTATENGYGKRTPLAE  265 (370)
T ss_dssp             -----CEEEEEETTSEEEEEEGGG
T ss_pred             cccCCceEEEeeCCCCEEEEEHHH
Confidence               456788889999888887753

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=91.82  E-value=1.3  Score=26.85  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           95 SLQEELTQIRDECSQLKTELEEKIKALELVVSENQQ  130 (510)
Q Consensus        95 ~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~  130 (510)
                      +++.++..+..+...|..-+.++..++..|+.+.+.
T Consensus        13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~   48 (51)
T 3m91_A           13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR   48 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455444444444444444444444444433

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.77  E-value=3.3  Score=31.31  Aligned_cols=15  Identities=27%  Similarity=0.368  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 010470          131 IRAQLEEMTMKAKNA  145 (510)
Q Consensus       131 l~~~~~~~~~~~~~~  145 (510)
                      ++..+..++..+..+
T Consensus        80 ~q~~i~~lE~eL~~~   94 (129)
T 3tnu_B           80 ARNKLAELEEALQKA   94 (129)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHH
Confidence            333334444444333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=91.54  E-value=2.2  Score=28.71  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           82 SKALLQEKESLITSLQEELTQIRDEC  107 (510)
Q Consensus        82 ~~~~~~~~~~~i~~l~~~l~~l~~~~  107 (510)
                      ++..++..+..+.+-+.+-..++.++
T Consensus        25 Le~~v~~le~~Le~s~~~q~~~~~El   50 (79)
T 3cvf_A           25 LEHQLRAMERSLEEARAERERARAEV   50 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.44  E-value=0.29  Score=36.68  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           86 LQEKESLITSLQEELTQIRDECSQLKTELEEK  117 (510)
Q Consensus        86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~  117 (510)
                      +.+..+++..-+.+-..++.+..+|..++...
T Consensus        84 FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~  115 (135)
T 2e7s_A           84 FDEANNLVADARMEKYAIEILNKRLTEQLREK  115 (135)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=91.38  E-value=4.1  Score=39.01  Aligned_cols=79  Identities=11%  Similarity=0.130  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhhHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           52 DNLETELQQCYKAQSRLSEQLVVEVAESRS-SKALLQE--KESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSEN  128 (510)
Q Consensus        52 ~~l~~el~~~~k~~~~~~~~l~~~~~~~~~-~~~~~~~--~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~  128 (510)
                      ..+...++++..-.....+.+....+..+. +.+...+  ....-..|+++|+++++-..+++.+...+......|.+-+
T Consensus       355 ~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (471)
T 3mq9_A          355 YAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL  434 (471)
T ss_dssp             HHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence            345555555443333444444444443333 3222222  2233344777777777777777777776666655555444


Q ss_pred             HH
Q 010470          129 QQ  130 (510)
Q Consensus       129 ~~  130 (510)
                      +.
T Consensus       435 ~~  436 (471)
T 3mq9_A          435 DA  436 (471)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=91.32  E-value=7.6  Score=34.61  Aligned_cols=188  Identities=12%  Similarity=0.113  Sum_probs=107.1

Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCccee---------cccccccceeEEEEecCCCEEEEEeCCCeEEEEEcC---C----
Q 010470          235 YNSARLISGGQDKSIKLWDTNTGSLSS---------TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN---S----  298 (510)
Q Consensus       235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~----  298 (510)
                      |+..++++.+.+|.|+--.+.+.+...         .+. ....+..+........++..+..|.++-+...   .    
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            345678888999999877665432211         111 23344455555566778888888887666542   2    


Q ss_pred             --CCeeE---eecCCCCceEEEEEec--CCCCEEEEEeCCCcEEEEECCC-------CeEeeeeeecCceeEEEEcCCCC
Q 010470          299 --GRVRH---TLTGHTDKVCAVDVSK--ISSRHVVSAAYDRTLKVWDLHK-------GYCVNTIIFHSNCNALAFSMDGQ  364 (510)
Q Consensus       299 --~~~~~---~~~~~~~~v~~i~~~~--~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~i~~i~~~~~~~  364 (510)
                        |.++.   .+. ....|.++...+  .++.+++..+.+|.++-..+..       |.....+.....+..+....+..
T Consensus        80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~  158 (307)
T 1zi0_A           80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED  158 (307)
T ss_dssp             SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred             CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence              22211   122 334566554422  2456788899999999987641       22222222334444444444556


Q ss_pred             EEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          365 TIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       365 ~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      .++..+.+|.+..++...       ..-+.-+.......|.++...+++..+++.+..|.++-.++.
T Consensus       159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~  225 (307)
T 1zi0_A          159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA  225 (307)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred             EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence            777888889888887632       112222222233566666655556678888889988888764

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.20  E-value=4.2  Score=31.44  Aligned_cols=42  Identities=14%  Similarity=0.295  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          101 TQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA  142 (510)
Q Consensus       101 ~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~  142 (510)
                      .....++..|..++.+.......+..++..+..+++.|...+
T Consensus        54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL   95 (154)
T 2ocy_A           54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   95 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444434444445555555555555443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=90.74  E-value=7.3  Score=37.30  Aligned_cols=12  Identities=17%  Similarity=0.318  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q 010470           48 KEKADNLETELQ   59 (510)
Q Consensus        48 ~~~~~~l~~el~   59 (510)
                      ++.++.++++++
T Consensus       372 eeal~~~~~~i~  383 (471)
T 3mq9_A          372 DEALKDAQTRIT  383 (471)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333444444433

>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}

Probab=90.74  E-value=2.5  Score=28.10  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           84 ALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRA  133 (510)
Q Consensus        84 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~  133 (510)
                      ...+.....|..+..++.+++.+......+++++...+..|..|....+.
T Consensus         5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk   54 (74)
T 2xv5_A            5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK   54 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666677777777777766667777777766666666655543

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=90.48  E-value=3.1  Score=28.73  Aligned_cols=52  Identities=17%  Similarity=0.168  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           84 ALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQL  135 (510)
Q Consensus        84 ~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~  135 (510)
                      ..++.....|..+..++.+++.+......+++.+...+..|..|....+.-+
T Consensus        28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL   79 (86)
T 1x8y_A           28 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL   79 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3445556666667777777777777777777777777777776666655433

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=90.45  E-value=5  Score=31.01  Aligned_cols=65  Identities=17%  Similarity=0.186  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           88 EKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAENKML  152 (510)
Q Consensus        88 ~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~  152 (510)
                      ..+..+..+..++...+........++++..+.+..+..+++.........+.++..++.+....
T Consensus        49 ~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~  113 (147)
T 2b9c_A           49 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTV  113 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555666666666666667777777777777777777777777777777777776665443

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=90.44  E-value=11  Score=35.08  Aligned_cols=265  Identities=15%  Similarity=0.177  Sum_probs=124.2

Q ss_pred             ceEEEEEecCCCEEEEeeCCCeEEEEeCCCC-cc----------eecccc-cccceeEEEEecCCCEEEEEeCC-CeEEE
Q 010470          227 GCASILFEYNSARLISGGQDKSIKLWDTNTG-SL----------SSTLYG-CLGSVLDLAITHDNRSVIAASSS-NNLYV  293 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~----------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-~~i~i  293 (510)
                      .|..|+..  +.+.+.-..||.|..|-.... ++          ...+.. ....|..++..  ..+.++...+ +.|+.
T Consensus        17 ~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~   92 (406)
T 4d9s_A           17 KVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYS   92 (406)
T ss_dssp             CEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEE
T ss_pred             ceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEE
Confidence            34444433  345555566788888865331 11          111111 12245555543  3344444455 48999


Q ss_pred             EEcCCC-C--------ee--EeecC-CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC-e---------Ee-eeeee
Q 010470          294 WDVNSG-R--------VR--HTLTG-HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG-Y---------CV-NTIIF  350 (510)
Q Consensus       294 wd~~~~-~--------~~--~~~~~-~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~-~---------~~-~~~~~  350 (510)
                      |-.... +        ..  ..+.. ....|..|+.   ...+.+....+|.|+.|-.... +         .. ..+..
T Consensus        93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~  169 (406)
T 4d9s_A           93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA  169 (406)
T ss_dssp             EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred             EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc
Confidence            954321 1        00  11111 2235666665   3456666678999999975421 1         11 11111


Q ss_pred             cC--ceeEEEEcCCCCEEEEecCCCcEEEEECCCC-c----------eeeeecccccccEEEEEEcCCCCEEEEEecCCc
Q 010470          351 HS--NCNALAFSMDGQTIFSGHIDGNLRLWDIQTG-K----------LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL  417 (510)
Q Consensus       351 ~~--~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~----------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  417 (510)
                      ..  .|..++.  ...+.++-..+|.|+.|-.... +          ....+.......|..++..  ..+.++-..+|.
T Consensus       170 ~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~  245 (406)
T 4d9s_A          170 FEGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGA  245 (406)
T ss_dssp             GTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCC
T ss_pred             cCCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCC
Confidence            11  3444544  3455566677899999964321 1          1111111111345555443  344555567888


Q ss_pred             EEEEEcCCceee-----------eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee-----------
Q 010470          418 HNLFDIRSLEVC-----------GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV-----------  475 (510)
Q Consensus       418 i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-----------  475 (510)
                      |+.|-....-.+           ..+.....   ..+  ..++....+.++-..||.|+.|-....-.+           
T Consensus       246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~---~~v--~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p  320 (406)
T 4d9s_A          246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSN---SFI--SQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP  320 (406)
T ss_dssp             EEEEECCTTSTTCSSSCCCEEEEEECGGGTT---SCE--EEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEE
T ss_pred             EEEeeCCCCCCCCCCCCcCccccEEecccCC---CCE--EEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccC
Confidence            888865421110           00110000   011  233334445555567888998864431110           


Q ss_pred             eccc-ccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          476 RTLK-EHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       476 ~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ..+. .....|..++..  ..+.+....||.|+.|
T Consensus       321 ~~v~~~~~~~v~~va~G--~~hs~alt~~G~v~~w  353 (406)
T 4d9s_A          321 VQVRFPDDQKVVQVSCG--WRHTLAVTERNNVFAW  353 (406)
T ss_dssp             EEECCGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred             EEEeccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence            0011 112345555543  2344445567778777

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=90.36  E-value=5.2  Score=31.08  Aligned_cols=52  Identities=10%  Similarity=0.169  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           96 LQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEA  147 (510)
Q Consensus        96 l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~  147 (510)
                      ..+.-+.++.+++.|..+++++....+........|...+..++..+.....
T Consensus        68 asqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Ke  119 (155)
T 2efr_A           68 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL  119 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666666666666666666665555555666666666555544433

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=90.20  E-value=1.2  Score=24.01  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010470           80 RSSKALLQEKESLITSLQEELTQ  102 (510)
Q Consensus        80 ~~~~~~~~~~~~~i~~l~~~l~~  102 (510)
                      ++++..+.+++.+|..|+++..+
T Consensus        10 ekLhk~ie~KdeeIa~Lk~eN~e   32 (37)
T 1t6f_A           10 EKLHKEIEQKDNEIARLKKENKE   32 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHH
Confidence            33444444445544444444443

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=89.92  E-value=10  Score=33.84  Aligned_cols=188  Identities=11%  Similarity=0.123  Sum_probs=106.1

Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCCCe-------eE--eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECC---CC--
Q 010470          277 HDNRSVIAASSSNNLYVWDVNSGRV-------RH--TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH---KG--  342 (510)
Q Consensus       277 ~~~~~l~~~~~d~~i~iwd~~~~~~-------~~--~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~---~~--  342 (510)
                      |+..++++.+.+|.|+-..+..-+.       ..  .+.. .+.+..+.... ....++..+..|.++-+...   ..  
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r   83 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR   83 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence            4667889999999999887653321       11  1222 23444444444 45667777788887777643   11  


Q ss_pred             ----eEe---eeeeecCceeEEEEcC---CCCEEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCC
Q 010470          343 ----YCV---NTIIFHSNCNALAFSM---DGQTIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRS  405 (510)
Q Consensus       343 ----~~~---~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~  405 (510)
                          .++   -.+.....+.++...+   ++.+++..+..|.++...+..       |.....+..  ...+..+.....
T Consensus        84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~--~d~lv~~~~~~~  161 (312)
T 1suu_A           84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND--KDFVTSAEIVFK  161 (312)
T ss_dssp             ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT--TCCEEEEEEECT
T ss_pred             cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC--CCEEEEEEEeCC
Confidence                110   0112223344443332   467788889999998887632       222223332  256666665555


Q ss_pred             CCEEEEEecCCcEEEEEcCCcee-------eeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 010470          406 GNIILTSGRDNLHNLFDIRSLEV-------CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISK  471 (510)
Q Consensus       406 ~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  471 (510)
                      +..++..+.+|.+..+....-..       +..+.....   ..+..+..-.++..|++.+.+|....+++..
T Consensus       162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~---d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG---DLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT---CCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC---CEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            66788888999998888754211       111111111   1112233444566788888899999888753

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=89.63  E-value=4.1  Score=28.81  Aligned_cols=6  Identities=33%  Similarity=0.540  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 010470           97 QEELTQ  102 (510)
Q Consensus        97 ~~~l~~  102 (510)
                      ..++..
T Consensus        38 ~~el~~   43 (96)
T 3q8t_A           38 AENLEK   43 (96)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}

Probab=89.55  E-value=3.2  Score=29.13  Aligned_cols=16  Identities=6%  Similarity=0.001  Sum_probs=9.3

Q ss_pred             cHHHHHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQC   61 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~   61 (510)
                      -....+..|++|+...
T Consensus        32 ~tM~~ieeLQ~Ei~~~   47 (107)
T 2k48_A           32 FTMSTLQELQENITAH   47 (107)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            3445566666666653

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=89.19  E-value=4.4  Score=28.57  Aligned_cols=43  Identities=19%  Similarity=0.350  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           95 SLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEE  137 (510)
Q Consensus        95 ~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~  137 (510)
                      ++.+.+.+++.+..+...+++.+++....|+.+.+.++.++.+
T Consensus        41 e~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q   83 (103)
T 4h22_A           41 ELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ   83 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444555555555555555555554443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=88.94  E-value=5  Score=28.83  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          124 VVSENQQIRAQLEEMTMKAKNAEAEN  149 (510)
Q Consensus       124 l~~e~~~l~~~~~~~~~~~~~~~~~~  149 (510)
                      |+.|...|...+.....+++.++.++
T Consensus        76 LqgEI~~Lnq~Lq~a~ae~erlr~~~  101 (121)
T 3mq7_A           76 LEGEITTLNHKLQDASAEVERLRREN  101 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33344444444444444444444333

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=88.84  E-value=1.2  Score=23.79  Aligned_cols=27  Identities=15%  Similarity=0.182  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          107 CSQLKTELEEKIKALELVVSENQQIRA  133 (510)
Q Consensus       107 ~~~l~~~l~~~~~~~~~l~~e~~~l~~  133 (510)
                      ..+|+.+++++...+..|++|...|+.
T Consensus         3 MnQLE~kVEeLl~~n~~Le~eV~rLk~   29 (34)
T 2oxj_A            3 MXQLEXKVXELLXKNXHLEXEVXRLKX   29 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            356677777777777777777666665

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=88.77  E-value=3.9  Score=28.93  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           91 SLITSLQEELTQIRDECSQLKTEL  114 (510)
Q Consensus        91 ~~i~~l~~~l~~l~~~~~~l~~~l  114 (510)
                      +.|.+|..+.+.|++++..|+.++
T Consensus        19 ~ei~~Le~E~~rLr~~~~~LE~~L   42 (100)
T 1go4_E           19 LKVEELEGERSRLEEEKRMLEAQL   42 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.33  E-value=6  Score=29.73  Aligned_cols=37  Identities=14%  Similarity=0.295  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          106 ECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKA  142 (510)
Q Consensus       106 ~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~  142 (510)
                      ++..|..++.+.......+..++..+..+++.+...+
T Consensus        47 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL   83 (135)
T 2e7s_A           47 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   83 (135)
T ss_dssp             HHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333334444444555555554443

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=87.98  E-value=26  Score=36.02  Aligned_cols=150  Identities=11%  Similarity=0.070  Sum_probs=76.8

Q ss_pred             ccceEEEEEecC-CCEEEEeeCCCeEEEEeCCCCcceecccc-------cccceeEEEEecCC-CEEEEEeCCCe----E
Q 010470          225 EGGCASILFEYN-SARLISGGQDKSIKLWDTNTGSLSSTLYG-------CLGSVLDLAITHDN-RSVIAASSSNN----L  291 (510)
Q Consensus       225 ~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-~~l~~~~~d~~----i  291 (510)
                      .+.|.+|+++|. ...++.++..+.|...+= .|+.-..+..       ....+.+|+++|.+ ..++++.....    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            357999999985 456777777776665542 2332222221       13468999999853 44555543211    2


Q ss_pred             EEEE-cCCCCeeEeecCC-------C--CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-------ecCce
Q 010470          292 YVWD-VNSGRVRHTLTGH-------T--DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-------FHSNC  354 (510)
Q Consensus       292 ~iwd-~~~~~~~~~~~~~-------~--~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~i  354 (510)
                      .||- .+.|+.-..+...       .  ..+..++++|.+.+.++.+...+.|.. ....|+.-..+.       ....+
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~  171 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY  171 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence            3333 3334422222110       1  135668888865667777664444322 222222111111       11347


Q ss_pred             eEEEEcC-CCCEEEEecCC-CcEE
Q 010470          355 NALAFSM-DGQTIFSGHID-GNLR  376 (510)
Q Consensus       355 ~~i~~~~-~~~~l~~~~~d-g~i~  376 (510)
                      ..+.++| ++..++++..+ +.|+
T Consensus       172 ~~i~~~p~~~~~~~~~~~~~~~v~  195 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATAPQGMY  195 (789)
T ss_dssp             EEEEECTTSTTCEEEEESSTTCEE
T ss_pred             EEEEECCCCCCEEEEEEcCCCeEE
Confidence            7888888 44456655544 4443

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=87.97  E-value=4.9  Score=27.60  Aligned_cols=48  Identities=17%  Similarity=0.225  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           86 LQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRA  133 (510)
Q Consensus        86 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~  133 (510)
                      +...+..|..+..++.+++.+......+++.+...+..|..|....+.
T Consensus        28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk   75 (84)
T 1gk4_A           28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK   75 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            445566666677777777777777777777777777766666655543

>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}

Probab=87.55  E-value=24  Score=35.11  Aligned_cols=73  Identities=8%  Similarity=0.058  Sum_probs=46.8

Q ss_pred             CCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-------CeEeeeeeecCceeEEEEc-CCCCEEEEecCCCcEEEEEC
Q 010470          309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-------GYCVNTIIFHSNCNALAFS-MDGQTIFSGHIDGNLRLWDI  380 (510)
Q Consensus       309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~  380 (510)
                      ...|..+.... +..+++.++..|.++...+..       |...-.+.....+..+... ..+..++..+.+|....|+.
T Consensus       553 ~e~i~~~~~~~-~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~  631 (716)
T 1zvu_A          553 GATVDHMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV  631 (716)
T ss_dssp             TCCEEEEECCC-TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEES
T ss_pred             CCeEEEEEEec-CCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEH
Confidence            34566654444 567788889999999887642       2233333333444444444 34567888889999999987


Q ss_pred             CC
Q 010470          381 QT  382 (510)
Q Consensus       381 ~~  382 (510)
                      ..
T Consensus       632 ~~  633 (716)
T 1zvu_A          632 SD  633 (716)
T ss_dssp             TT
T ss_pred             HH
Confidence            54

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.49  E-value=9.6  Score=40.23  Aligned_cols=38  Identities=13%  Similarity=0.259  Sum_probs=33.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  306 (510)
                      .+.+++..++..++++.+.|+++++|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            56778888899999999999999999999999877653

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=87.47  E-value=17  Score=33.35  Aligned_cols=187  Identities=12%  Similarity=0.092  Sum_probs=105.8

Q ss_pred             cceEEEEEecCCCEEEEeeC---------------CCeEEEEeCCCC--cceecccc------cccceeEEEEe---cC-
Q 010470          226 GGCASILFEYNSARLISGGQ---------------DKSIKLWDTNTG--SLSSTLYG------CLGSVLDLAIT---HD-  278 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~---------------dg~i~iwd~~~~--~~~~~~~~------~~~~v~~~~~~---~~-  278 (510)
                      -.|..+...+++.+-+.-+.               --.|.+||+.++  +.++++.-      ....+..+.+.   |+ 
T Consensus        87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~  166 (381)
T 3q6k_A           87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG  166 (381)
T ss_dssp             SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred             EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence            46888888887764333211               125889999999  87766532      24567888887   22 


Q ss_pred             ---CCEEEEEe-CCCeEEEEEcCCCCeeEeecC--------------C----CCceEEEEEecCC---CCEEEEEeCCC-
Q 010470          279 ---NRSVIAAS-SSNNLYVWDVNSGRVRHTLTG--------------H----TDKVCAVDVSKIS---SRHVVSAAYDR-  332 (510)
Q Consensus       279 ---~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~--------------~----~~~v~~i~~~~~~---~~~l~s~~~dg-  332 (510)
                         +.+++.+. ..+.|.|+|+.+++..+.+..              .    ...+..++.+|..   ++.|+.+...+ 
T Consensus       167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~  246 (381)
T 3q6k_A          167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI  246 (381)
T ss_dssp             TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS
T ss_pred             CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC
Confidence               34555444 567899999998875544321              0    1356777777731   34444443322 


Q ss_pred             cEEEEE---CCC---CeEeeeeeec---CceeEEEEc-CCCCEEEEecCCCcEEEEECCC-C---ceeee-ecccccccE
Q 010470          333 TLKVWD---LHK---GYCVNTIIFH---SNCNALAFS-MDGQTIFSGHIDGNLRLWDIQT-G---KLLSE-VAAHSLAAV  397 (510)
Q Consensus       333 ~i~iwd---~~~---~~~~~~~~~~---~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~-~~~~~~~~i  397 (510)
                      .++--.   ++.   ...+..+...   +....+++. .+|..+++--....|..|+..+ .   ..... ........+
T Consensus       247 ~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~p  326 (381)
T 3q6k_A          247 KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFG  326 (381)
T ss_dssp             EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSE
T ss_pred             cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCcccc
Confidence            222222   111   1112222222   234456675 5787777777888999999865 1   11122 222233467


Q ss_pred             EEEEEcCCCCEEEEE
Q 010470          398 TSISLSRSGNIILTS  412 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~  412 (510)
                      ..+.+.++|.+.+.+
T Consensus       327 d~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          327 TDISVDSKGGLWFMS  341 (381)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             CeEEECCCCeEEEEE
Confidence            777777766654444

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=87.26  E-value=6.8  Score=31.16  Aligned_cols=18  Identities=17%  Similarity=0.270  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010470           90 ESLITSLQEELTQIRDEC  107 (510)
Q Consensus        90 ~~~i~~l~~~l~~l~~~~  107 (510)
                      ..+|+.|..|+..+.+++
T Consensus        19 d~LV~~L~~En~~L~~ql   36 (190)
T 4emc_A           19 DLLVANLVNENFVLSEKL   36 (190)
T ss_dssp             -CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444333

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=86.90  E-value=5.9  Score=27.39  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010470          132 RAQLEEMTMKAKNAEAENKMLV  153 (510)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~  153 (510)
                      -..+.+++.+++.+..+|..+.
T Consensus        64 ~~~v~eLe~everL~~ENq~L~   85 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLL   85 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666655555443

>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}

Probab=86.84  E-value=6.3  Score=27.67  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           95 SLQEELTQIRDECSQLKTELEEKIKAL  121 (510)
Q Consensus        95 ~l~~~l~~l~~~~~~l~~~l~~~~~~~  121 (510)
                      +++.++.+.+..+.....+++.+.++.
T Consensus        39 eLQ~Ei~~~E~QL~iArQKLkdAe~~~   65 (107)
T 2k48_A           39 ELQENITAHEQQLVTARQKLKDAEKAV   65 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444433444444443333

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=86.73  E-value=31  Score=35.50  Aligned_cols=147  Identities=12%  Similarity=0.115  Sum_probs=78.0

Q ss_pred             ccceeEEEEecCC-CEEEEEeCCCeEEEEEcCCCCeeEeecCC-------CCceEEEEEecCCCCEEEEEeCCCc----E
Q 010470          267 LGSVLDLAITHDN-RSVIAASSSNNLYVWDVNSGRVRHTLTGH-------TDKVCAVDVSKISSRHVVSAAYDRT----L  334 (510)
Q Consensus       267 ~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~s~~~dg~----i  334 (510)
                      .+.|.+|+++|.+ ..+++++..+.|...+ +.|+.-..+..+       ...+.++++.|.+.+.++.+.....    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            4689999999863 5667777777776655 445433333221       2469999998855555555542211    2


Q ss_pred             EEE-ECCCCeEeeeeeec----------CceeEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeecc-----cccccE
Q 010470          335 KVW-DLHKGYCVNTIIFH----------SNCNALAFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAA-----HSLAAV  397 (510)
Q Consensus       335 ~iw-d~~~~~~~~~~~~~----------~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i  397 (510)
                      .|| ....|+.-..+...          ..+..++++|. ...++++...+.|.. ....|+.-..+..     .....+
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~  171 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY  171 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence            233 23334322222211          12456888874 456666664444432 2223333222221     111457


Q ss_pred             EEEEEcCC-CCEEEEEecC
Q 010470          398 TSISLSRS-GNIILTSGRD  415 (510)
Q Consensus       398 ~~i~~~~~-~~~l~~~~~d  415 (510)
                      ..+.++|. +..++++..+
T Consensus       172 ~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEECTTSTTCEEEEESS
T ss_pred             EEEEECCCCCCEEEEEEcC
Confidence            88999884 4466666554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.68  E-value=27  Score=36.80  Aligned_cols=37  Identities=14%  Similarity=0.218  Sum_probs=31.9

Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 010470          354 CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA  390 (510)
Q Consensus       354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  390 (510)
                      +.+++..++..++++-+.|+++++|++.+++++....
T Consensus       238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            5677777888899999999999999999998877653

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=86.64  E-value=7.7  Score=30.85  Aligned_cols=18  Identities=33%  Similarity=0.425  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010470           96 LQEELTQIRDECSQLKTE  113 (510)
Q Consensus        96 l~~~l~~l~~~~~~l~~~  113 (510)
                      |.++++....+++.|+++
T Consensus        32 L~~ql~~k~~ei~~L~~q   49 (190)
T 4emc_A           32 LSEKLDTKATEIKQLQKQ   49 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=86.42  E-value=7.2  Score=27.87  Aligned_cols=14  Identities=50%  Similarity=0.650  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHHH
Q 010470           89 KESLITSLQEELTQ  102 (510)
Q Consensus        89 ~~~~i~~l~~~l~~  102 (510)
                      +...+.++++++.+
T Consensus        43 Kq~~idelk~ei~q   56 (110)
T 2v4h_A           43 KQELIDKLKEEAEQ   56 (110)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=86.29  E-value=8.3  Score=28.50  Aligned_cols=16  Identities=13%  Similarity=0.245  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010470          116 EKIKALELVVSENQQI  131 (510)
Q Consensus       116 ~~~~~~~~l~~e~~~l  131 (510)
                      .+.-+++.|+.+.+.+
T Consensus        65 ~a~~e~e~Lr~e~~~l   80 (120)
T 3i00_A           65 QAADDCEFLRAELDEL   80 (120)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333444444433

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=85.95  E-value=5.6  Score=26.15  Aligned_cols=34  Identities=9%  Similarity=0.163  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          111 KTELEEKIKALELVVSENQQIRAQLEEMTMKAKN  144 (510)
Q Consensus       111 ~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~  144 (510)
                      -.+++++.-+.+.++.|..+++.....++.++..
T Consensus        36 I~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e   69 (77)
T 2w83_C           36 IAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE   69 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444443333

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=85.89  E-value=2  Score=23.23  Aligned_cols=28  Identities=21%  Similarity=0.206  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          108 SQLKTELEEKIKALELVVSENQQIRAQL  135 (510)
Q Consensus       108 ~~l~~~l~~~~~~~~~l~~e~~~l~~~~  135 (510)
                      .||+.+++++...+..|..|..+|+..+
T Consensus         4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll   31 (36)
T 1kd8_A            4 KQLEAEVEEIESEVWHLENEVARLEKEN   31 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            3455555555555555555555554433

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=85.76  E-value=19  Score=32.23  Aligned_cols=190  Identities=8%  Similarity=0.076  Sum_probs=103.5

Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCC----CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC---C------CCe
Q 010470          277 HDNRSVIAASSSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL---H------KGY  343 (510)
Q Consensus       277 ~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~---~------~~~  343 (510)
                      |+..++++.+.+|.|+--.+..-    .....+.. .+.+..+.... ....++..+..|.++-+..   .      .|.
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~   80 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ   80 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence            56677889999999987765421    11112332 23444444444 4566777777888766654   2      233


Q ss_pred             Eeeee---eecCceeEE-EEcC--CCCEEEEecCCCcEEEEECCC------CceeeeecccccccEEEEEEcCCCCEEEE
Q 010470          344 CVNTI---IFHSNCNAL-AFSM--DGQTIFSGHIDGNLRLWDIQT------GKLLSEVAAHSLAAVTSISLSRSGNIILT  411 (510)
Q Consensus       344 ~~~~~---~~~~~i~~i-~~~~--~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  411 (510)
                      ++..+   .....|.++ .+.+  ++.+++..+.+|.++...+..      ++-+..+.......+..+........++.
T Consensus        81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l  160 (323)
T 1wp5_A           81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL  160 (323)
T ss_dssp             EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred             ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence            22221   122335544 3332  266788999999999887632      11222222222245555555555667888


Q ss_pred             EecCCcEEEEEcCCceee-------eEeecCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCC
Q 010470          412 SGRDNLHNLFDIRSLEVC-------GSLRATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISK  471 (510)
Q Consensus       412 ~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~  471 (510)
                      .+.+|.+..|....-...       ..+......   .+..+..-+++. .|++.+..|..+..++..
T Consensus       161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d---~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e  225 (323)
T 1wp5_A          161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGD---YIVSGQLITSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTC---CEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCC---EEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence            888998888877532211       111111111   112232223344 778888888888777654

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=85.74  E-value=2.3  Score=22.65  Aligned_cols=26  Identities=23%  Similarity=0.255  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          108 SQLKTELEEKIKALELVVSENQQIRA  133 (510)
Q Consensus       108 ~~l~~~l~~~~~~~~~l~~e~~~l~~  133 (510)
                      .+|+.+++++...+..|+.|...++.
T Consensus         4 nQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            4 XQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            45566666666666666666665554

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=85.69  E-value=7  Score=27.05  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          101 TQIRDECSQLKTELEEKIKALELVVSENQQIRAQLE  136 (510)
Q Consensus       101 ~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~  136 (510)
                      ..|+.+..+|..+++.+.+++..+..|++.++..++
T Consensus        51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~   86 (90)
T 2wt7_B           51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE   86 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555556666555544

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=85.52  E-value=3.4  Score=23.25  Aligned_cols=35  Identities=11%  Similarity=0.243  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           98 EELTQIRDECSQLKTELEEKIKALELVVSENQQIR  132 (510)
Q Consensus        98 ~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~  132 (510)
                      +.+..++....+|+...+.+.+-+..|++|...+.
T Consensus        10 kkiarlkkdnlqlerdeqnlekiianlrdeiarle   44 (52)
T 3he5_B           10 KKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE   44 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444433

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=85.22  E-value=6.4  Score=26.23  Aligned_cols=37  Identities=11%  Similarity=0.197  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           91 SLITSLQEELTQIRDECSQLKTELEEKIKALELVVSE  127 (510)
Q Consensus        91 ~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e  127 (510)
                      .++.+|+-.+..++.+..+.+.++.+...++..|+..
T Consensus        26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~q   62 (81)
T 3qh9_A           26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQ   62 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3344466666666666666666666555444444433

>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A

Probab=85.09  E-value=2.2  Score=21.27  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          100 LTQIRDECSQLKTELEEKIKALEL  123 (510)
Q Consensus       100 l~~l~~~~~~l~~~l~~~~~~~~~  123 (510)
                      ++.++..+..|+.+++++.+.++.
T Consensus         3 wealekkcaalesklqalekklea   26 (31)
T 3ljm_A            3 WEALEKKCAALESKLQALEKKLEA   26 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555544443

>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}

Probab=85.07  E-value=4.7  Score=30.42  Aligned_cols=33  Identities=21%  Similarity=0.184  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          113 ELEEKIKALELVVSENQQIRAQLEEMTMKAKNA  145 (510)
Q Consensus       113 ~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~  145 (510)
                      .++.....+..+..+++.+......++....++
T Consensus        74 dleasr~akk~~ea~la~l~~~~~~LeAE~aKL  106 (146)
T 2xnx_M           74 EQEINRNLLGNAKLELDQLSSEKEQLTIEKAKL  106 (146)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence            333333333334444444444444444333333

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=84.75  E-value=3.3  Score=22.46  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          108 SQLKTELEEKIKALELVVSENQQIRAQ  134 (510)
Q Consensus       108 ~~l~~~l~~~~~~~~~l~~e~~~l~~~  134 (510)
                      .+|+.+++++...+..|+.|..+|+.-
T Consensus         4 nQLE~KVEeLl~~~~~Le~eV~RLk~l   30 (36)
T 1kd8_B            4 KQLKAKVEELKSKLWHLKNKVARLKKK   30 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            445555555555555555555555543

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=84.72  E-value=11  Score=28.43  Aligned_cols=20  Identities=10%  Similarity=0.134  Sum_probs=7.7

Q ss_pred             ccccccccHHHHHHHHHHHH
Q 010470           39 PIISQGSEWKEKADNLETEL   58 (510)
Q Consensus        39 ~~~~~~~~~~~~~~~l~~el   58 (510)
                      ||..+..+..+.+..++...
T Consensus        28 PF~~Vk~EVq~sl~~l~~l~   47 (130)
T 4dnd_A           28 PFFVVRGEVQKAVNTARGLY   47 (130)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH
Confidence            44333334444444443333

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=84.49  E-value=7  Score=26.06  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           83 KALLQEKESLITSLQEELTQIRDECSQLKTELEEKIK  119 (510)
Q Consensus        83 ~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~  119 (510)
                      +-.+.+.+.+.......+....+++..|..+++....
T Consensus        32 r~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~   68 (81)
T 3qh9_A           32 KIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDA   68 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence            3333333443333444444444444444444444333

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=84.48  E-value=21  Score=31.65  Aligned_cols=223  Identities=9%  Similarity=0.121  Sum_probs=115.6

Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCCCeeE---------eecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC---C----
Q 010470          277 HDNRSVIAASSSNNLYVWDVNSGRVRH---------TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL---H----  340 (510)
Q Consensus       277 ~~~~~l~~~~~d~~i~iwd~~~~~~~~---------~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~---~----  340 (510)
                      |+..++++.+.+|.|+--.+.+-+...         .+.. .+.+..+.... ....++..+..|.++-+..   .    
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~   78 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATR   78 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCC
Confidence            355678889999999877665422111         1222 23343443433 4556666677887666643   2    


Q ss_pred             --CCeEee---eeeecCceeEEEEc---CCCCEEEEecCCCcEEEEECCC-------CceeeeecccccccEEEEEEcCC
Q 010470          341 --KGYCVN---TIIFHSNCNALAFS---MDGQTIFSGHIDGNLRLWDIQT-------GKLLSEVAAHSLAAVTSISLSRS  405 (510)
Q Consensus       341 --~~~~~~---~~~~~~~i~~i~~~---~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~i~~i~~~~~  405 (510)
                        .|.++.   .+.....|.++...   +++.+++..+.+|.++...+..       |.....+...  ..+..+.....
T Consensus        79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~--d~lv~~~~~~~  156 (307)
T 1zi0_A           79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG--DELIGVDLTSG  156 (307)
T ss_dssp             SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT--CCEEEEEEECT
T ss_pred             CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC--CEEEEEEEeCC
Confidence              233222   12222345544332   3566788899999999887632       2122222222  45555555555


Q ss_pred             CCEEEEEecCCcEEEEEcCCceee-------eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-----
Q 010470          406 GNIILTSGRDNLHNLFDIRSLEVC-------GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-----  473 (510)
Q Consensus       406 ~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-----  473 (510)
                      ...++..+.+|.+..++...-...       ..+.....   ..+..+...+++..+++.+..|.++-.++....     
T Consensus       157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~---d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg  233 (307)
T 1zi0_A          157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG---DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA  233 (307)
T ss_dssp             TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT---CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTT
T ss_pred             CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCC---CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCC
Confidence            667888888898888876532211       11111111   112223333455678888889998888764321     


Q ss_pred             ----eeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          474 ----IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       474 ----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                          ....+....+.+..+....+...++..+.+|.+
T Consensus       234 ~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~  270 (307)
T 1zi0_A          234 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL  270 (307)
T ss_dssp             SCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred             CCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence                112222233555555444444445555566654

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=84.26  E-value=3  Score=22.11  Aligned_cols=26  Identities=12%  Similarity=0.071  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          108 SQLKTELEEKIKALELVVSENQQIRA  133 (510)
Q Consensus       108 ~~l~~~l~~~~~~~~~l~~e~~~l~~  133 (510)
                      .+|+.+++++...+..|+.|...++.
T Consensus         3 nQLEdKvEeLl~~~~~Le~EV~RLk~   28 (33)
T 3c3g_A            3 KXIEXKLXEIXSKXYHXENXLARIKX   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45566666666666666666666554

>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A

Probab=84.05  E-value=9.7  Score=30.24  Aligned_cols=16  Identities=31%  Similarity=0.538  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010470           48 KEKADNLETELQQCYK   63 (510)
Q Consensus        48 ~~~~~~l~~el~~~~k   63 (510)
                      .+-+.+|+..+++.+.
T Consensus        11 ~~~l~~Lq~~i~~l~~   26 (174)
T 2p22_A           11 HEMLQNLQTVVNELYR   26 (174)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4445556666666553

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=83.81  E-value=2.9  Score=21.13  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           92 LITSLQEELTQIRDECSQLKTELEEKIK  119 (510)
Q Consensus        92 ~i~~l~~~l~~l~~~~~~l~~~l~~~~~  119 (510)
                      +|..+++++..++.++..|+-++.++.+
T Consensus         3 eiaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            3 EIAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHc

>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1

Probab=83.74  E-value=6.2  Score=24.88  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           89 KESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRA  133 (510)
Q Consensus        89 ~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~  133 (510)
                      .+..|..+..++.+++.+......+++.+...+..|..|....+.
T Consensus         5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRk   49 (59)
T 1gk6_A            5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRK   49 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            345556666677777777766667777777766666666655443

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=83.71  E-value=8.4  Score=26.37  Aligned_cols=91  Identities=12%  Similarity=0.192  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV  125 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~  125 (510)
                      .+..+.....+.+-..-.+.....+.+...........+.+|+-...+...+.++.+-.++.+++..+.+++...+=-++
T Consensus        17 ~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~e   96 (114)
T 2xzr_A           17 HIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIE   96 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH


Q ss_pred             HHHHHHHHHHH
Q 010470          126 SENQQIRAQLE  136 (510)
Q Consensus       126 ~e~~~l~~~~~  136 (510)
                      .|...++.-+.
T Consensus        97 ne~ar~kkl~~  107 (114)
T 2xzr_A           97 NEIARIKKLIK  107 (114)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=83.44  E-value=8.6  Score=26.24  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=0.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           45 SEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTE  113 (510)
Q Consensus        45 ~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~  113 (510)
                      .++++++..++..+....+..-++..++.....++..++=.+++....+..+++.-..+...+.....+
T Consensus         2 ~s~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~   70 (83)
T 2xdj_A            2 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSG   70 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             ccHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=83.44  E-value=5.6  Score=31.78  Aligned_cols=73  Identities=12%  Similarity=0.195  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           48 KEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKA  120 (510)
Q Consensus        48 ~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~  120 (510)
                      .++..++++..++.+....++.+++...+.+++.+-..-.-.+..|..+.+++.+++.++...+.+.....+.
T Consensus        70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K  142 (175)
T 3lay_A           70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ  142 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*

Probab=82.77  E-value=12  Score=34.69  Aligned_cols=100  Identities=13%  Similarity=0.144  Sum_probs=0.0

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 010470           43 QGSEWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECS-----QLKTELEEK  117 (510)
Q Consensus        43 ~~~~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~-----~l~~~l~~~  117 (510)
                      ........+..|+..|+++-..-++..+-+..+......-.+.....+..+.+..+++++...-++     .....+..+
T Consensus        89 ye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l  168 (461)
T 3ghg_B           89 QERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVL  168 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          118 IKALELVVSENQQIRAQLEEMTMKA  142 (510)
Q Consensus       118 ~~~~~~l~~e~~~l~~~~~~~~~~~  142 (510)
                      ...++.+......|+..+..++..+
T Consensus       169 ~~~~~~~~~~i~~l~~~~~~~~~~c  193 (461)
T 3ghg_B          169 RSILENLRSKIQKLESDVSAQMEYC  193 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhc

>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}

Probab=82.46  E-value=11  Score=26.86  Aligned_cols=55  Identities=16%  Similarity=0.285  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           93 ITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEA  147 (510)
Q Consensus        93 i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~  147 (510)
                      +..+++++.+.+.++.+|..++.+++...+.++.|+|=.=..+..++.-++....
T Consensus         6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~   60 (106)
T 4e61_A            6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD   60 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=82.27  E-value=30  Score=31.68  Aligned_cols=229  Identities=10%  Similarity=0.082  Sum_probs=0.0

Q ss_pred             cCCCEEEEEeCCCeEEEEEcCC---------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE---------
Q 010470          277 HDNRSVIAASSSNNLYVWDVNS---------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD---------  338 (510)
Q Consensus       277 ~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd---------  338 (510)
                      |+..++++.+.+|.|+--.+.+         +..-..++ ..+.+..+.... ....++..+..|.++-+.         
T Consensus         5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r   82 (370)
T 3l6v_A            5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS   82 (370)
T ss_dssp             CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc


Q ss_pred             CCCCeEeee---eeecCceeEEEEc---CCCCEEEEecCCCcEEEEECCC-----CceeeeecccccccEEEEEEcCCCC
Q 010470          339 LHKGYCVNT---IIFHSNCNALAFS---MDGQTIFSGHIDGNLRLWDIQT-----GKLLSEVAAHSLAAVTSISLSRSGN  407 (510)
Q Consensus       339 ~~~~~~~~~---~~~~~~i~~i~~~---~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~i~~i~~~~~~~  407 (510)
                      ...|..+..   +.....|.++...   .++.+|+.++..|.++...+..     ..-+..+.......+..+.......
T Consensus        83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~  162 (370)
T 3l6v_A           83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDR  162 (370)
T ss_dssp             TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCC
T ss_pred             ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCc


Q ss_pred             EEEEEecCCcEEEEEcC----CceeeeEeecCCCeeecCceeEEEcC---------------------------------
Q 010470          408 IILTSGRDNLHNLFDIR----SLEVCGSLRATGNRVASNWSRSCISP---------------------------------  450 (510)
Q Consensus       408 ~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~---------------------------------  450 (510)
                      .++..+.+|.+..|+..    .++...-...-.-.-...+..+...+                                 
T Consensus       163 ~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~  242 (370)
T 3l6v_A          163 DVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD  242 (370)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------------
T ss_pred             eEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccccc


Q ss_pred             --CCCEEEEEcCCCeEEEEeCC---------CcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470          451 --DESYVAAGSADGSVYIWSIS---------KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVC  507 (510)
Q Consensus       451 --~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  507 (510)
                        ++.+|++.+..|..+...+.         .|-....+....+.+..+.+..+...++..+..|.+.
T Consensus       243 ~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~i  310 (370)
T 3l6v_A          243 NGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLV  310 (370)
T ss_dssp             ----CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEE
T ss_pred             ccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEE

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=82.15  E-value=5.1  Score=22.72  Aligned_cols=34  Identities=12%  Similarity=0.301  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           93 ITSLQEELTQIRDECSQLKTELEEKIKALELVVS  126 (510)
Q Consensus        93 i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~  126 (510)
                      +.+|......++.+..+|++++..+.+++.+|+.
T Consensus         5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq   38 (42)
T 2oqq_A            5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH   38 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=82.08  E-value=31  Score=31.77  Aligned_cols=275  Identities=11%  Similarity=0.078  Sum_probs=0.0

Q ss_pred             EEEecCCCEEEEeeCCCeEEEEeCCCC------------cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010470          231 ILFEYNSARLISGGQDKSIKLWDTNTG------------SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNS  298 (510)
Q Consensus       231 ~~~s~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  298 (510)
                      +.++......+.-..||.|..|-.+..            .+...-......+..++++.-....++...||.|+.|-...
T Consensus        56 ~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~  135 (389)
T 3kci_A           56 VQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAE  135 (389)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCG
T ss_pred             EEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCC


Q ss_pred             ------------CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCC-------------CeEeeeeeecCc
Q 010470          299 ------------GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHK-------------GYCVNTIIFHSN  353 (510)
Q Consensus       299 ------------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~-------------~~~~~~~~~~~~  353 (510)
                                  ..+...-......|..++.   ...+.+....+|.|+.|-...             ............
T Consensus       136 ~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~  212 (389)
T 3kci_A          136 DGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHR  212 (389)
T ss_dssp             GGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSC
T ss_pred             CCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCe


Q ss_pred             eeEEEEcCCCCEEEEecCCCcEEEEECC---------CCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcC
Q 010470          354 CNALAFSMDGQTIFSGHIDGNLRLWDIQ---------TGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIR  424 (510)
Q Consensus       354 i~~i~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~  424 (510)
                      +..++......+.++-..+|.|+.|-..         ..................+.+.....+.++-..+|.|+.|-..
T Consensus       213 v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n  292 (389)
T 3kci_A          213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKG  292 (389)
T ss_dssp             EEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCC


Q ss_pred             CceeeeEeecCCCeeecCce------eEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCC--c
Q 010470          425 SLEVCGSLRATGNRVASNWS------RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK--P  496 (510)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~  496 (510)
                      ..-.+..-..........+.      .+.++......++-..||.|+.|-....-.+..-...........-...+.  .
T Consensus       293 ~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~  372 (389)
T 3kci_A          293 DYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVN  372 (389)
T ss_dssp             GGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCC
T ss_pred             CCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEE


Q ss_pred             EEEeeCCCeEEE
Q 010470          497 LASADKNGVVCV  508 (510)
Q Consensus       497 l~s~~~dg~i~i  508 (510)
                      -++|+.+.++.+
T Consensus       373 ~va~G~~ht~al  384 (389)
T 3kci_A          373 RVACGSAHTLAW  384 (389)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEecCCcEEEE

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=81.75  E-value=7.5  Score=26.17  Aligned_cols=54  Identities=13%  Similarity=0.105  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           95 SLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAEAE  148 (510)
Q Consensus        95 ~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~  148 (510)
                      ++.+.+..|+.++.-.+.-++++...+.....+.+.++.++..+..+++..+..
T Consensus        11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~   64 (78)
T 3efg_A           11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST   64 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc

>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}

Probab=81.73  E-value=9.3  Score=25.43  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           57 ELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITS-----LQEELTQIRDECSQLKTELEEKIKA  120 (510)
Q Consensus        57 el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-----l~~~l~~l~~~~~~l~~~l~~~~~~  120 (510)
                      .|.++++.......+|...++.++...+.+......++.     .+.++..++..+.+|+.++..+...
T Consensus         6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va~   74 (78)
T 2ic6_A            6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAA   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=81.67  E-value=3.1  Score=22.28  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          105 DECSQLKTELEEKIKALELVVSENQQIRA  133 (510)
Q Consensus       105 ~~~~~l~~~l~~~~~~~~~l~~e~~~l~~  133 (510)
                      ++..+|+.+++++...+..|..|...++.
T Consensus         1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            1 XRMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHccHHHHHHHHHHHH

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=81.55  E-value=6.9  Score=38.01  Aligned_cols=61  Identities=18%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             CceeEEEEcCCCCEEE-EecCCC-----------cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEE
Q 010470          352 SNCNALAFSMDGQTIF-SGHIDG-----------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS  412 (510)
Q Consensus       352 ~~i~~i~~~~~~~~l~-~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  412 (510)
                      ..+..+.|.++|.+.+ +-...+           .|+.++..+++....+.......++.++|+||++.|+++
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=81.39  E-value=4.7  Score=24.78  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           98 EELTQIRDECSQLKTELEEKIKALELVVSEN  128 (510)
Q Consensus        98 ~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~  128 (510)
                      .+++.|+.++.+|+.+++++.++++.++.+.
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=81.35  E-value=6.9  Score=23.73  Aligned_cols=42  Identities=12%  Similarity=0.154  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          104 RDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNA  145 (510)
Q Consensus       104 ~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~  145 (510)
                      +.+..+|..++..+...+..|.......+.++..+.+.++.+
T Consensus         8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A            8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=81.34  E-value=4.2  Score=21.65  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          109 QLKTELEEKIKALELVVSENQQIRA  133 (510)
Q Consensus       109 ~l~~~l~~~~~~~~~l~~e~~~l~~  133 (510)
                      +|+.+++++...+..|+.|...|+.
T Consensus         4 QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            4 QLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHH

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=81.31  E-value=2.2  Score=41.84  Aligned_cols=126  Identities=10%  Similarity=0.100  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           46 EWKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVV  125 (510)
Q Consensus        46 ~~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~  125 (510)
                      ..+.+...++..|.+.........+.|.+..+....+....+..+.+...|.+.-.+++++...|+.+-....++.+.|.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~  411 (575)
T 2i1j_A          332 RAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLE  411 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010470          126 SENQQIRAQLEEMTMKAKNAEAENKMLVDRWMLQKMQDAERLNEAN  171 (510)
Q Consensus       126 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (510)
                      .+...+...+..+....+.-+.+...+.......+....+...+..
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~  457 (575)
T 2i1j_A          412 DEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL  457 (575)
T ss_dssp             ------------------------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=80.92  E-value=11  Score=25.73  Aligned_cols=62  Identities=10%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           68 LSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQ  129 (510)
Q Consensus        68 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~  129 (510)
                      +.+++..............-+....+..++.++..|+-.+.++..+++.+.+.-..+-.+.|
T Consensus         4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD   65 (83)
T 2xdj_A            4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID   65 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=80.86  E-value=20  Score=28.64  Aligned_cols=61  Identities=13%  Similarity=0.228  Sum_probs=0.0

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           76 VAESRSSKALLQEKESLITSLQEELTQIRDECSQLK-------TELEEKIKALELVVSENQQIRAQLE  136 (510)
Q Consensus        76 ~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~-------~~l~~~~~~~~~l~~e~~~l~~~~~  136 (510)
                      .++..+++++.++......++++++...+.++..|.       .+++++.+++..++.+....+.++.
T Consensus        70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~  137 (175)
T 3lay_A           70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD  137 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=80.80  E-value=37  Score=31.80  Aligned_cols=101  Identities=15%  Similarity=0.182  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           47 WKEKADNLETELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEEL-TQIRDECSQLKTELEEKIKALELVV  125 (510)
Q Consensus        47 ~~~~~~~l~~el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l-~~l~~~~~~l~~~l~~~~~~~~~l~  125 (510)
                      .+.++...|.||...+++-.+..+.-.....+.+.-...+++-...|.+...+- .+++.++.+-.+.+++-.+++..-.
T Consensus         7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~   86 (497)
T 3iox_A            7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYP   86 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010470          126 SENQQIRAQLEEMTMKAKNAEA  147 (510)
Q Consensus       126 ~e~~~l~~~~~~~~~~~~~~~~  147 (510)
                      .++.+-..........+.+++.
T Consensus        87 ~kl~aYe~~~~~~~k~lae~ek  108 (497)
T 3iox_A           87 VKLKAYEDEQTSIKAALAELEK  108 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=80.75  E-value=12  Score=26.02  Aligned_cols=78  Identities=14%  Similarity=0.217  Sum_probs=0.0

Q ss_pred             hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           66 SRLSEQLVVEVAESRSSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAK  143 (510)
Q Consensus        66 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~  143 (510)
                      ......+.........++..+...+....++.....++..+...|..++..+......|......+...+..++..++
T Consensus        10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh

>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}

Probab=80.70  E-value=8.9  Score=27.37  Aligned_cols=72  Identities=14%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             HHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           58 LQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITS-----LQEELTQIRDECSQLKTELEEKIKALELVVSENQ  129 (510)
Q Consensus        58 l~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-----l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~  129 (510)
                      |.++++.......+|...++.++...+.+......++.     .+.++..++..+.+|+.++......-.......|
T Consensus        24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~~~k~~D  100 (113)
T 4fi5_A           24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKNLGKEQD  100 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=80.67  E-value=10  Score=25.30  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           83 KALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVSENQQIRAQLEEMTMKAKNAE  146 (510)
Q Consensus        83 ~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~  146 (510)
                      .++.......+...+.+++.++..-.+|..--..+..-+..+..|.+.+...++.+..+.+.++
T Consensus        10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~   73 (78)
T 3iv1_A           10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=80.52  E-value=9  Score=24.53  Aligned_cols=46  Identities=15%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           81 SSKALLQEKESLITSLQEELTQIRDECSQLKTELEEKIKALELVVS  126 (510)
Q Consensus        81 ~~~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~  126 (510)
                      ...+..+.+.....++..++..++.+..+|..++..+..++..|+.
T Consensus        13 AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~   58 (63)
T 1ci6_A           13 AATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD   58 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=80.35  E-value=14  Score=26.66  Aligned_cols=96  Identities=11%  Similarity=0.124  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470           57 ELQQCYKAQSRLSEQLVVEVAESRSSKALLQEKESLITSLQEEL----TQIRDECSQLKTELEEKIKALELVVSENQQIR  132 (510)
Q Consensus        57 el~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~l----~~l~~~~~~l~~~l~~~~~~~~~l~~e~~~l~  132 (510)
                      +-.++.+..++...+|...+.....+.+...+++..+.+++.+-    ..-...+..+..++.+....+..++..++...
T Consensus         2 eHi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~   81 (107)
T 2no2_A            2 SHADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSA   81 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010470          133 AQLEEMTMKAKNAEAENKML  152 (510)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~  152 (510)
                      ..-..+...+..+..+...+
T Consensus        82 ~~~~~l~~~~~~l~~Ek~~L  101 (107)
T 2no2_A           82 QSEANWAAEFAELEKERDSL  101 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=80.10  E-value=4.3  Score=20.53  Aligned_cols=30  Identities=20%  Similarity=0.220  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010470          106 ECSQLKTELEEKIKALELVVSENQQIRAQL  135 (510)
Q Consensus       106 ~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~  135 (510)
                      ++..|+.++.++.+++..|+.|...++.-+
T Consensus         3 eiaalkqeiaalkkeiaalkfeiaalkqgy   32 (33)
T 4dzn_A            3 EIAALKQEIAALKKEIAALKFEIAALKQGY   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccc

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	510
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-41
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-27
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-36
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-30
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-27
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-23
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-21
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-25
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-21
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-20
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-18
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-17
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-17
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-15
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-14
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-16
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-15
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-11
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-15
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-15
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-14
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-12
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-11
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.004
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-06
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	5e-08
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003
d1flga_	582	b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a	1e-04
d1kb0a2	573	b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen	1e-04
d1kv9a2	560	b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen	2e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	6e-04
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	0.002
d1w6sa_	596	b.70.1.1 (A:) Methanol dehydrogenase, heavy chain	0.004
d2ad6a1	571	b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  148 bits (374), Expect = 2e-41
 Identities = 68/312 (21%), Positives = 128/312 (41%), Gaps = 25/312 (8%)

Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           K+ ++ H      ++F    + ++S  +D +IK+WD  TG    TL G   SV D++  H
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
             + + + S+   + +WD        T+ GH   V +V +   +  H+VSA+ D+T+K+W
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMW 128

Query: 338 DLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS--- 393
           ++  GYCV T   H      +  + DG  I S   D  +R+W + T +  +E+  H    
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 394 ----------------LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN 437
                                +    + G  +L+  RD    ++D+ +     +L    N
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 438 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPL 497
            V              ++ + + D ++ +W       ++TL  H   V S  +      +
Sbjct: 249 WVRG----VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 498 ASADKNGVVCVW 509
            +   +  V VW
Sbjct: 305 VTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (271), Expect = 5e-27
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 21/226 (9%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 276
           C   ++ H+   +S+    N   ++S  +DK+IK+W+  TG    T  G    V  +   
Sbjct: 93  CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 152

Query: 277 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV---------- 326
            D   + + S+   + VW V +   +  L  H   V  +  +  SS   +          
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212

Query: 327 ---------SAAYDRTLKVWDLHKGYCVNTIIFHSNC-NALAFSMDGQTIFSGHIDGNLR 376
                    S + D+T+K+WD+  G C+ T++ H N    + F   G+ I S   D  LR
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 272

Query: 377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFD 422
           +WD +  + +  + AH    VTS+   ++   ++T   D    +++
Sbjct: 273 VWDYKNKRCMKTLNAHE-HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (264), Expect = 4e-26
 Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 22/185 (11%)

Query: 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAI 275
            C      H      +    +   + S   D+++++W   T    + L      V  ++ 
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193

Query: 276 THD--------------------NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAV 315
             +                       +++ S    + +WDV++G    TL GH + V  V
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253

Query: 316 DVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGN 374
                  + ++S A D+TL+VWD     C+ T+  H +   +L F      + +G +D  
Sbjct: 254 LFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312

Query: 375 LRLWD 379
           +++W+
Sbjct: 313 VKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  134 bits (337), Expect = 6e-36
 Identities = 60/346 (17%), Positives = 127/346 (36%), Gaps = 10/346 (2%)

Query: 167 LNEANALYEDMIDRLKASGLEKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEG 226
           ++E + L ++  ++LK   +    K   D  +   +          +    +  +  H  
Sbjct: 1   MSELDQLRQE-AEQLKNQ-IRDARKACADATLS--QITNNIDPVGRIQMRTRRTLRGHLA 56

Query: 227 GCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS 286
              ++ +  +S  L+S  QD  + +WD+ T +    +      V+  A       V    
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116

Query: 287 SSNNLYVWDVNSGRVRHTLTGHTD--KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC 344
             N   ++++ +      ++               +    +V+++ D T  +WD+  G  
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176

Query: 345 VNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS 403
             T   H+    +L+ + D +   SG  D + +LWD++ G        H  + + +I   
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SDINAICFF 235

Query: 404 RSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS 463
            +GN   T   D    LFD+R+ +       + + +    +    S     + AG  D +
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293

Query: 464 VYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
             +W   KAD    L  H   V     +  G  +A+   +  + +W
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.7 bits (239), Expect = 1e-22
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 4/166 (2%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 276
                  H G   S+    ++   +SG  D S KLWD   G    T  G    +  +   
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235

Query: 277 HDNRSVIAASSSNNLYV--WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 334
            +  +    S      +     +   + ++       + +V  SK S R +++   D   
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNC 294

Query: 335 KVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWD 379
            VWD  K      +  H N  + L  + DG  + +G  D  L++W+
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 5/38 (13%), Positives = 15/38 (39%)

Query: 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD 253
                +  H+   + +    +   + +G  D  +K+W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (297), Expect = 2e-30
 Identities = 72/332 (21%), Positives = 132/332 (39%), Gaps = 54/332 (16%)

Query: 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAI 275
                +  H+    +   ++   R++SG  D ++K+W   TG    TL G  G V    +
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 276 THD--------------------------------------NRSVIAASSSNNLYVWDVN 297
             +                                       + V++ S    L VWD+ 
Sbjct: 66  RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125

Query: 298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL 357
           +G+  H L GH   V      +   R VVS AYD  +KVWD     C++T+  H+N    
Sbjct: 126 TGQCLHVLMGHVAAVR---CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY- 181

Query: 358 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNL 417
           +   DG  + SG +D ++R+WD++TG  +  +  H      +  +    NI+++   D+ 
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---SLTSGMELKDNILVSGNADST 238

Query: 418 HNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRT 477
             ++DI++ +   +L+      ++     C+  ++++V   S DG+V +W +   + +R 
Sbjct: 239 VKIWDIKTGQCLQTLQGPNKHQSAVT---CLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295

Query: 478 LKE-----HTAPVLSCSWSGLGKPLASADKNG 504
           L           V     S      A   +NG
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (233), Expect = 8e-22
 Identities = 59/256 (23%), Positives = 116/256 (45%), Gaps = 11/256 (4%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 276
            +     +           +  R++SG +D ++++WD  TG     L G + +V    + 
Sbjct: 87  GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQ 144

Query: 277 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336
           +D R V++ +    + VWD  +    HTL GHT++V      +    HVVS + D +++V
Sbjct: 145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY---SLQFDGIHVVSGSLDTSIRV 201

Query: 337 WDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
           WD+  G C++T+  H +  +    +    + SG+ D  +++WDI+TG+ L  +   +   
Sbjct: 202 WDVETGNCIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 260

Query: 397 VTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC-ISPDESYV 455
                L  + N ++TS  D    L+D+++ E   +L    +  +         S  +   
Sbjct: 261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 320

Query: 456 AAGSADGS----VYIW 467
           A GS +G+    + + 
Sbjct: 321 AVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (232), Expect = 9e-22
 Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 16/258 (6%)

Query: 252 WDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK 311
           W          L G    V+   +      +++ S  N L VW   +G+   TL GHT  
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 312 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI 371
           V +  +      +++ +            +       ++          +  + + SG  
Sbjct: 60  VWSSQMRD----NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115

Query: 372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS 431
           D  LR+WDI+TG+ L  +  H  A          G  +++   D +  ++D  +     +
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQ---YDGRRVVSGAYDFMVKVWDPETETCLHT 172

Query: 432 LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS 491
           L+              +  D  +V +GS D S+ +W +   + + TL  H +        
Sbjct: 173 LQ------GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226

Query: 492 GLGKPLASADKNGVVCVW 509
                L S + +  V +W
Sbjct: 227 --DNILVSGNADSTVKIW 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (195), Expect = 6e-17
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 14/176 (7%)

Query: 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAI 275
           TC H +  H     S+ F  +   ++SG  D SI++WD  TG+   TL G       + +
Sbjct: 168 TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 225

Query: 276 THDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLK 335
              +  +++ ++ + + +WD+ +G+   TL G      AV   + +   V++++ D T+K
Sbjct: 226 --KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283

Query: 336 VWDLHKGYCVNTIIFHSNC------NALAFSMDGQTIFSGHIDGN----LRLWDIQ 381
           +WDL  G  +  ++   +         +  S        G  +G     L + D  
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (278), Expect = 1e-27
 Identities = 59/330 (17%), Positives = 119/330 (36%), Gaps = 41/330 (12%)

Query: 219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG------------- 265
           HK   H      + F  +   L +G  +K+ +++  + GSL + L               
Sbjct: 56  HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 266 -----CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI 320
                    +  +  + D +  +A  + + L        R    +    ++         
Sbjct: 115 SSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNLRLWD 379
           S   +VS + DRT+++WDL  G C  T+              DG+ I +G +D  +R+WD
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233

Query: 380 IQTGKLLSEVAAHSL------AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV----- 428
            +TG L+  + + +        +V S+  +R G  +++   D    L+++++        
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293

Query: 429 ---CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV 485
               G+   T             + ++ Y+ +GS D  V  W     + +  L+ H   V
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 353

Query: 486 LSC------SWSGLGKPLASADKNGVVCVW 509
           +S       S        A+   +    +W
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.7 bits (244), Expect = 5e-23
 Identities = 60/284 (21%), Positives = 116/284 (40%), Gaps = 22/284 (7%)

Query: 209 AESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG 268
           A     +       + +    S+ F  +   L +G +D+ I++WD     +   L G   
Sbjct: 105 ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ 164

Query: 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSA 328
            +  L        +++ S    + +WD+ +G+   T     D V  V VS    +++ + 
Sbjct: 165 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAG 223

Query: 329 AYDRTLKVWDLHKGYCVNTIIFHSNC--------NALAFSMDGQTIFSGHIDGNLRLWDI 380
           + DR ++VWD   G+ V  +   +           ++ F+ DGQ++ SG +D +++LW++
Sbjct: 224 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283

Query: 381 QTGKLLSE-----------VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC 429
           Q     S+                   V S++ +++   IL+  +D     +D +S    
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

Query: 430 GSLRATGNRVAS--NWSRSCISPDESYVAAGSADGSVYIWSISK 471
             L+   N V S    + S + P+ +  A GS D    IW   K
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.1 bits (232), Expect = 2e-21
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 26/235 (11%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 276
               +  HE    S+ +  +  +L+SG  D+++++WD  TG  S TL    G        
Sbjct: 155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214

Query: 277 HDNRSVIAASSSNNLYVWDVNSGRVRHTL-------TGHTDKVCAVDVSKISSRHVVSAA 329
            D + + A S    + VWD  +G +   L       TGH D V +V  ++   + VVS +
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGS 273

Query: 330 YDRTLKVWDLHKG-------------YCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLR 376
            DR++K+W+L                  V  I       ++A + + + I SG  D  + 
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 377 LWDIQTGKLLSEVAAH-----SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL 426
            WD ++G  L  +  H     S+A     SL    N+  T   D    ++  + +
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (255), Expect = 4e-25
 Identities = 68/303 (22%), Positives = 122/303 (40%), Gaps = 28/303 (9%)

Query: 219 HKINAHEGGCASIL-FEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
            +I+        +   +Y+  +++SG +D +IK+WD NT      L G  GSV  L + +
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQY 63

Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           D R +I  SS + + VWDVN+G + +TL  H + V  +  +            DR++ VW
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK---DRSIAVW 120

Query: 338 DLHKGYCVNTIIFHSNCNALAFSM--DGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA 395
           D+     +          A    +  D + I S   D  +++W+  T + +  +  H   
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 178

Query: 396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455
                 L     ++++   DN   L+DI        L              CI  D   +
Sbjct: 179 -RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH------EELVRCIRFDNKRI 231

Query: 456 AAGSADGSVYIWSISKAD---------IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV 506
            +G+ DG + +W +  A           +RTL EH+  V    +      + S+  +  +
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289

Query: 507 CVW 509
            +W
Sbjct: 290 LIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 4e-15
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 276
            +  +  H      + F+       SG  D++IK+W+T+T     TL G    +    + 
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIAC--LQ 185

Query: 277 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336
           + +R V++ SS N + +WD+  G     L GH + V      +  ++ +VS AYD  +KV
Sbjct: 186 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAYDGKIKV 242

Query: 337 WDLHKGY---------CVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWD 379
           WDL             C+ T++ HS         D   I S   D  + +WD
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGR-VFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 4e-13
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 14/133 (10%)

Query: 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLA 274
           STC+     +         +Y    ++SG  D +I+LWD   G+    L G     L   
Sbjct: 166 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRC 223

Query: 275 ITHDNRSVIAASSSNNLYVWDVNSG---------RVRHTLTGHTDKVCAVDVSKISSRHV 325
           I  DN+ +++ +    + VWD+ +              TL  H+ +V  +         +
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ---FDEFQI 280

Query: 326 VSAAYDRTLKVWD 338
           VS+++D T+ +WD
Sbjct: 281 VSSSHDDTILIWD 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (226), Expect = 5e-21
 Identities = 27/291 (9%), Positives = 77/291 (26%), Gaps = 12/291 (4%)

Query: 224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTL-----YGCLGSVLDLAITHD 278
           H     ++     +  + +GG    +K+WD +     S +           +    +  D
Sbjct: 50  HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 279 NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338
             ++I    ++ L +WD+ +   R      +       ++      V  +          
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168

Query: 339 LHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVT 398
                 +          A    +            +  +      +          + + 
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228

Query: 399 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG 458
           S+    +G  +      +   +  +   +           ++  ++         +  + 
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA-----YCGKWFVST 283

Query: 459 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
             D  +  W       +   K  ++ VLSC  S   K + +   +    V+
Sbjct: 284 GKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 1e-13
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 308 HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF 367
           H   V ++  +    +  VS   D  L  W    G  +      S+  +   S+D + I 
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIV 322

Query: 368 SGHIDGNLRLWDI 380
           +G  D    ++++
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 4e-13
 Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 3/137 (2%)

Query: 287 SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN 346
             +N           +      T ++ ++          V       ++V  ++K     
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQ 260

Query: 347 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG 406
             +  S   +L F+  G+   S   D  L  W    G  + +    S  +V S  +S   
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS--SVLSCDISVDD 318

Query: 407 NIILTSGRDNLHNLFDI 423
             I+T   D    ++++
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 3e-12
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 276
            K++++ HE    S+ F Y     +S G+D  +  W T  G+          SVL   I+
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDIS 315

Query: 277 HDNRSVIAASSSNNLYVWDV 296
            D++ ++  S      V++V
Sbjct: 316 VDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 10/119 (8%)

Query: 270 VLDLAITHDNRSVIAASSSNNLYVWDV-NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSA 328
                +T D +        + L    +    R  +TL  H + VCAV +S   +RHV + 
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN-PTRHVYTG 69

Query: 329 AYDRTLKVWDLHKGYCVNTIIF-----HSNC-NALAFSMDGQTIFSGHIDGNLRLWDIQ 381
                +KVWD+      + +         N   +     DG T+  G     L +WD+ 
Sbjct: 70  G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 25/189 (13%), Positives = 52/189 (27%), Gaps = 5/189 (2%)

Query: 325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384
            V    D  +          +NT+       A+  S   + +++G   G +++WDI    
Sbjct: 25  PVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83

Query: 385 LLSEVAAHSL----AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVA 440
             S V+          + S  L   G  ++  G  +  +++D+ +         T +  A
Sbjct: 84  NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143

Query: 441 SNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA 500
                        +      + +V+                 A  +  S  G        
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203

Query: 501 DKNGVVCVW 509
           D        
Sbjct: 204 DNTVRSWDL 212

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.9 bits (221), Expect = 4e-20
 Identities = 44/361 (12%), Positives = 100/361 (27%), Gaps = 73/361 (20%)

Query: 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAI 275
              +   AH+    S+     ++  +S   D  +K+WD       +         +  + 
Sbjct: 5   ATANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 276 TH-------------DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSK--- 319
            H             +   V   S S +L  + +        +      +   D+ K   
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 320 -----------ISSRHVVSAAYDRTLKVWDLHK-GYCVNTIIFH---------------- 351
                      + S  +V+     T  +W  H      N++  +                
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 352 --SNCNALAFSMDGQTIFSGHIDGNLRLWD-----IQTGKLLSEVAAHSLAAVTSISLSR 404
                 ++  S  G  I +G  +G +++ +                 ++  ++ S+  S 
Sbjct: 183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241

Query: 405 SGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRS------------CISPDE 452
            G+++  +   N      +   E    + +      S+ +                +   
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301

Query: 453 SYVAAGSADGSVYIWSISKADIVRTLKEHTAPV----LSCSWSGLGKPLASADKNGVVCV 508
             + +   DG +  W +   + + TL  H   +       +    G  LA     GV  V
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP---GVFDV 358

Query: 509 W 509
            
Sbjct: 359 K 359

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 3e-10
 Identities = 35/357 (9%), Positives = 98/357 (27%), Gaps = 64/357 (17%)

Query: 195 DGVVR--RSEEGAEFFAESTVPSTCKHKINAHEG--GCASILFEYNSARLISGGQDKSIK 250
           DG ++   ++       +    S   HK   H      A     +    + +      + 
Sbjct: 33  DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 92

Query: 251 LWDTNTGSLSSTLYGCLGSVLDLAI---------------THDNRSVIAASSSNNLYVWD 295
            +       +  +      +LD  +                  +  ++A       Y+W 
Sbjct: 93  FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 152

Query: 296 VNSG------------------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
            +                        +    +    +VD+S      + +   + T+++ 
Sbjct: 153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERGLIATGFNNGTVQIS 210

Query: 338 DLHKGYCVNTIIFHSNC-------NALAFSMDGQTIFSGHIDGNL---RLWDIQTGKLLS 387
           +L     +       +         ++ FS  G  +   H   +     L++ + G+ + 
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270

Query: 388 EVAAHSL------------AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRAT 435
            ++  +             + V S+S + SG  + ++G D     +D+++ E   +L   
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
            + +        +      +A         +  + K        +    +       
Sbjct: 331 CDDIEIEEDILAVDEHGDSLAEPGVFD---VKFLKKGWRSGMGADLNESLCCVCLDR 384

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 11/127 (8%)

Query: 252 WDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDK 311
             T++   S   +     V+ L+      ++ +A     L  WDV +     TL  H D 
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333

Query: 312 VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI 371
           +   +       H  S A      V  L KG+            +   +   +++    +
Sbjct: 334 IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW-----------RSGMGADLNESLCCVCL 382

Query: 372 DGNLRLW 378
           D ++R +
Sbjct: 383 DRSIRWF 389

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.1 bits (206), Expect = 2e-18
 Identities = 34/314 (10%), Positives = 89/314 (28%), Gaps = 28/314 (8%)

Query: 222 NAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLG---SVLDLAITHD 278
            A +   + I    + + L+    D S+ ++  +  + +  L   L     +L      +
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 279 NRSVIA-ASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
               I   +    +   D+        LT +   +    + K     +++A++D  ++V 
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127

Query: 338 DLHKGYCVNTIIFHSN-------CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE-- 388
           D          + + N               +   +  G  +  ++ + +   +  +   
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187

Query: 389 -VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL---------RATGNR 438
             +           L +       S  D    +          +          R     
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247

Query: 439 VASNWSRSCI--SPDESYVAAGSADGSVYIWSISKADIVRTL-KEHTAPVLSCSWSGLGK 495
               +  + I  SP   ++    +DG +  W++     ++   K +   V+  + S    
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS--DN 305

Query: 496 PLASADKNGVVCVW 509
            L  A  +      
Sbjct: 306 ILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 9e-10
 Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 5/100 (5%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 276
              K         SI F      L + G D  I  W+  T                + I 
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIA 301

Query: 277 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD 316
             +  +  A+S +           +  T+  +   +  + 
Sbjct: 302 CSDNILCLATSDDTFKTN----AAIDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 12/155 (7%), Positives = 38/155 (24%), Gaps = 20/155 (12%)

Query: 245 QDKSIKLWDTNTGSLSSTLYGCLGS----VLDLAITHDNRSVIAASSSNNLYVWDVNSG- 299
            +  ++ +        +      G          +  +      +S    + V   +   
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 300 --------------RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345
                         R+    T     V +++ S    + + +A  D  +  W+L     +
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKI 286

Query: 346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDI 380
                 +  + +  +     +     D   +    
Sbjct: 287 KNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 83.8 bits (205), Expect = 3e-18
 Identities = 30/308 (9%), Positives = 73/308 (23%), Gaps = 27/308 (8%)

Query: 223 AHEGGCASILFEYNSARLISGGQD--KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 280
                   +    ++      G      + ++D  TG          G+V  + +  + +
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL-GNVFAMGVDRNGK 98

Query: 281 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV---------VSAAYD 331
             + A+    +   D+ +G+           +    +S  S                   
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158

Query: 332 RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL------ 385
           + + V+D+           +S+  A AF  D + ++           D            
Sbjct: 159 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 218

Query: 386 -LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV---CGSLRATGNRVAS 441
               +      +     L            D          + V      +         
Sbjct: 219 KPFVIPLIP-GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 442 NWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASAD 501
            +S        +Y       G +  + +      R + E    +     S   K +    
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRK 333

Query: 502 KNGVVCVW 509
            +G +  +
Sbjct: 334 DDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 72.6 bits (176), Expect = 2e-14
 Identities = 21/164 (12%), Positives = 40/164 (24%), Gaps = 18/164 (10%)

Query: 240 LISGGQDKSIKLWDTNTGSLSS-------TLYGCLGSVLDLAITHDNRSVIAASSSNN-- 290
           L            D    + S         +    GS     +   + +  A     N  
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252

Query: 291 -----LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV 345
                    D    R+   L             + +  +   A     L  +D+      
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA-AYYQGAPEKGVLLKYDVKTR--- 308

Query: 346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV 389
                 +N   L  S D +T+     DG +  + ++  +    V
Sbjct: 309 KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 64.9 bits (156), Expect = 5e-12
 Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 24/224 (10%)

Query: 277 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336
                         ++V+D+   ++    T ++        +   S+++   +Y      
Sbjct: 147 PLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD--SKNLYYLSYRSLDPS 204

Query: 337 WDL-------HKGYCVNTIIFHSNC-NALAFSMDGQTIFSGHIDGN-----LRLWDIQTG 383
            D                I       N         T  +G  D N         ++  G
Sbjct: 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 384 KLLSEVAAHS-LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN 442
                +   S +   +             +    +   +D+++      +    N +   
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTD- 319

Query: 443 WSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVL 486
                +S D   V     DG +Y + + K +  RT++    P++
Sbjct: 320 ---LRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 26/232 (11%), Positives = 54/232 (23%), Gaps = 18/232 (7%)

Query: 283 IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD--RTLKVWDLH 340
           IA  S    ++ DV+   V         ++  V      ++            L ++D  
Sbjct: 18  IAFVSRGQAFIQDVSGTYVLK--VPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYR 74

Query: 341 KGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSI 400
            G          N  A+    +G+     +    +   D++TGK      +   A +T  
Sbjct: 75  TGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE-AMITDF 133

Query: 401 SLSRSGNIILTSGRDNLHNLF-----DIRSLEVCGSLRATGNRVASNWSRSCISPDESYV 455
           ++S +   I                  I   ++ G          S+        D   +
Sbjct: 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL 193

Query: 456 AAGSADGSVYIWSISKADI-------VRTLKEHTAPVLSCSWSGLGKPLASA 500
              S             +           +                    + 
Sbjct: 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 4/50 (8%), Positives = 12/50 (24%)

Query: 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY 264
                K+   +     +    +   ++    D  I  +         T+ 
Sbjct: 304 DVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 449 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLA--SADKNGVV 506
           SP +  + A  + G  +I  +S   +++        +      G  K        +   +
Sbjct: 11  SPLDGDLIAFVSRGQAFIQDVSGTYVLKVP--EPLRIRYVRRGGDTKVAFIHGTREGDFL 68

Query: 507 CVW 509
            ++
Sbjct: 69  GIY 71

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.0 bits (195), Expect = 3e-17
 Identities = 45/300 (15%), Positives = 92/300 (30%), Gaps = 29/300 (9%)

Query: 219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHD 278
             I+ H  G  ++        LISG  D  I  W +++             ++ L  +  
Sbjct: 7   KTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57

Query: 279 NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD 338
                 +                      H         S  +         D  L +  
Sbjct: 58  QEYSSISWDDTLKVNGITK----------HEFGSQPKVASANNDGFTAVLTNDDDLLILQ 107

Query: 339 LHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVT 398
              G  + ++  +S  +A                  ++++ +   ++  ++     A  +
Sbjct: 108 SFTGDIIKSVRLNSPGSA-VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 166

Query: 399 SISLSRSGNIILTSGRDNLHNLFDIRSLE-------VCGSLRATGNRVASNWSRSCISPD 451
            IS+S S   I          L+D++S E          S     +   +    +    +
Sbjct: 167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226

Query: 452 ESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
           E  VA GS D +++I+S+ +   I++ L  H   V +  W      L S+  +  +  W 
Sbjct: 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 6e-07
 Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNT-GSLSSTLYGCLGSVLDLAI 275
             + I+       +   E     + +G  D +I ++       +   L      V +L  
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266

Query: 276 THDNRSVIAASSSNNLYVWDV 296
              +  ++++ +   +  W+V
Sbjct: 267 ETPST-LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 9e-07
 Identities = 12/88 (13%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 337 WDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT-GKLLSEVAAHSLA 395
           W              +   A    ++   + +G +D N+ ++ ++   K++  + AH   
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK-D 259

Query: 396 AVTSISLSRSGNIILTSGRDNLHNLFDI 423
            V ++       ++ +SG D     +++
Sbjct: 260 GVNNLLWETPSTLV-SSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL 357
              V  T++GH   + A+ V+ +     +S +YD  +  W     +  ++    +   +L
Sbjct: 2   HDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSSMHQDHS----NLIVSL 52

Query: 358 AFSMDGQ 364
             S   +
Sbjct: 53  DNSKAQE 59

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 4/35 (11%)

Query: 475 VRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           ++T+  H   + + + +    PL S   +G +  W
Sbjct: 6   LKTISGHNKGITALTVN----PLISGSYDGRIMEW 36

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 79.3 bits (193), Expect = 7e-17
 Identities = 45/297 (15%), Positives = 98/297 (32%), Gaps = 7/297 (2%)

Query: 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLA 274
           +       H     ++    +   L S   +  I  WD +TG  +          +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 275 ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 334
            T     +   S  ++L V       V  +               +S+   ++ A     
Sbjct: 63  TTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121

Query: 335 KVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL 394
                H       I ++S+C   A S D Q +  G  D  + ++ +    +         
Sbjct: 122 IAIYSHGKLTEVPISYNSSCV--ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP 179

Query: 395 AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY 454
           A +TS++ S +G  ++ + +      + + +     +   +     +  +    SPD   
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVAN-NFELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 455 VAAGSADGSVYIWSISKAD--IVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           +A GS D SV +W+++K     +     H    ++         + SA ++  +  W
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWD 253
                 AH     + +   N   ++S GQD +IK W+
Sbjct: 260 PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 77.1 bits (188), Expect = 5e-16
 Identities = 31/278 (11%), Positives = 64/278 (23%), Gaps = 40/278 (14%)

Query: 273 LAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYD 331
            A+   +  +I  +  NNL+V DV S  V  +             ++  +    V   + 
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 332 RTLKVWDLHKGYCVNTIIFHSNCNA-------LAFSMDGQTIFSGHIDGN---------- 374
             +   DL            S            A S DG+ +++                
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 375 --LRLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGRDNLHNLFD---IRSLEV 428
             L ++    G     V        V  +  +  G++ +        ++       +L +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 429 CGSLRA-----TGNRVASNWSRSC----------ISPDESYVAAGSADGSVYIWSISKAD 473
               R             + S                D+   A            +    
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 474 IV-RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
              +   + T    +   S           N +     
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 75.9 bits (185), Expect = 1e-15
 Identities = 23/192 (11%), Positives = 55/192 (28%), Gaps = 9/192 (4%)

Query: 215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLA 274
               +K++   G     L   N  R      D     W   +     ++   +    D  
Sbjct: 162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL-YFWPHQSPRHEFSMLYTIARFKD-- 218

Query: 275 ITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 334
              D +    A         D+ +G+          ++    +      + +    +  L
Sbjct: 219 ---DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RL 274

Query: 335 KVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE--VAAH 392
             +DL +   +           +AF   G  ++ G    +L +++  T + +    +   
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334

Query: 393 SLAAVTSISLSR 404
            ++  T     R
Sbjct: 335 DMSTTTPQVFIR 346

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 73.2 bits (178), Expect = 1e-14
 Identities = 31/305 (10%), Positives = 74/305 (24%), Gaps = 49/305 (16%)

Query: 224 HEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSL------SSTLYGCLGSVLDLAIT 276
            + G  + +   ++    +       I   D +T         SS       S+   AI+
Sbjct: 38  DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97

Query: 277 HDNRSVIAASSSNNLYVWDVNSG----RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR 332
            D + V A  +                 V  T  G   K             + +A    
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 333 TL------KVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF------------------- 367
                      D+  G     +   +       + D    +                   
Sbjct: 158 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 217

Query: 368 -------SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNL 420
                  +  +       D++TGK  ++  A       +   S      +    + L   
Sbjct: 218 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA-K 276

Query: 421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE 480
           +D++  ++  +     +                 +  G     + +++    + V+ +K 
Sbjct: 277 YDLKQRKLIKAA-NLDHTYYC----VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

Query: 481 HTAPV 485
               +
Sbjct: 332 PGGDM 336

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 76.5 bits (186), Expect = 6e-16
 Identities = 40/309 (12%), Positives = 83/309 (26%), Gaps = 20/309 (6%)

Query: 211 STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSV 270
            ++P T +       G    +       ++       S+      + + +          
Sbjct: 10  PSLPRTAR-------GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQT 61

Query: 271 LDLAITHDNRSVIAASSSNNLYVWDVNSGRVR--HTLTGHTDKVCAVDVSKISSRHVVSA 328
                +       +     N+ +WD          T+   +  V  +     S R     
Sbjct: 62  TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG 121

Query: 329 AYDRTLKVWDLHKGYCVNTIIFHSNCNAL--AFSMDGQTIFSGHIDGNLRLWDIQTGKLL 386
                     L      N  +           F            D N            
Sbjct: 122 EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF 181

Query: 387 SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV---ASNW 443
                     V S+  +  G++  ++G D    L++       G       +    + + 
Sbjct: 182 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 241

Query: 444 SRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTA---PVLSCSWSGLGKPLASA 500
                SPD + +A+ SAD ++ IW+++   + +T+   T      L   W+   + L S 
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSI 299

Query: 501 DKNGVVCVW 509
             NG +   
Sbjct: 300 SANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.2 bits (149), Expect = 3e-11
 Identities = 11/92 (11%), Positives = 33/92 (35%)

Query: 332 RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA 391
                  + +   +  +    +   L +S DG  I S   D  +++W++ T K+   +  
Sbjct: 219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 278

Query: 392 HSLAAVTSISLSRSGNIILTSGRDNLHNLFDI 423
            +      + +  +   +++   +   N  + 
Sbjct: 279 GTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (132), Expect = 4e-09
 Identities = 10/66 (15%), Positives = 27/66 (40%)

Query: 274 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT 333
             + D   + +AS+   + +W+V + +V  T+   T           + + +VS + +  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 334 LKVWDL 339
           +   + 
Sbjct: 305 INFVNP 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 75.6 bits (184), Expect = 1e-15
 Identities = 21/170 (12%), Positives = 48/170 (28%), Gaps = 5/170 (2%)

Query: 238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVN 297
                   +             +      + +        D       +    L   D+ 
Sbjct: 168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227

Query: 298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL 357
           +G +        D                +      L+ +DL K   +  +    +  ++
Sbjct: 228 TGEMAMREVRIMDVFYFSTAVN--PAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSV 285

Query: 358 AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV---AAHSLAAVTSISLSR 404
             S DG T++ G   G+L  +D +T +   +V      S++  +    +R
Sbjct: 286 NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.0 bits (159), Expect = 2e-12
 Identities = 36/254 (14%), Positives = 72/254 (28%), Gaps = 27/254 (10%)

Query: 221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNR 280
           ++      A               Q   + L+D  T S     +     +  LA   D  
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA-FEAPRQITMLAWARDGS 147

Query: 281 SVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV--------------- 325
            +       +L+V D  +G +       + +        + +                  
Sbjct: 148 KLY--GLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 326 -------VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW 378
                     AY   L   DL  G      +   +    + +++     +      L  +
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR 438
           D++    +  V      +  S+++S  G+ +   G       +D  +LE  G +   GN 
Sbjct: 266 DLEKNASIKRVPLPH--SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323

Query: 439 VASNWSRSCISPDE 452
             S  S    + DE
Sbjct: 324 SMSLASVRLFTRDE 337

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.4 bits (147), Expect = 7e-11
 Identities = 24/202 (11%), Positives = 54/202 (26%), Gaps = 17/202 (8%)

Query: 323 RHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIF-SGHIDGNLRLW 378
            ++++ A    L V D  K      I              +  G+  + + +   +L   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 379 DIQTGKLLSEVAAHSLA----AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA 434
           D+ TG+ L  +   +      ++   +LS  G  +          L          +L  
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 435 TGNRVASNWSRSC-------ISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLS 487
                      +         + D S +     D  V         +V      +    +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP--EAGTLVEDKPIQSWEAET 179

Query: 488 CSWSGLGKPLASADKNGVVCVW 509
            +   +       + +GV+   
Sbjct: 180 YAQPDVLAVWNQHESSGVMATP 201

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 75.8 bits (185), Expect = 2e-15
 Identities = 19/279 (6%), Positives = 68/279 (24%), Gaps = 36/279 (12%)

Query: 237 SARLISGGQDKSIKLWDTNTGSLSSTL-------YGCLGSVLDLAITHDNRSVIAAS-SS 288
            AR   G +   ++++D  T    + +       +     V  +     +  ++     S
Sbjct: 86  FARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145

Query: 289 NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG----YC 344
           +      V            +       +   ++      +   +L   DL         
Sbjct: 146 SAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201

Query: 345 VNTIIFHSNCNAL---AFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVT--- 398
           V      +   +      +  G  +++                + + +  +         
Sbjct: 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNF 261

Query: 399 ------SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS-----NWSRSC 447
                  ++  ++ + I+    ++        +        + G          +     
Sbjct: 262 RSAGFQMVAKLKNTDGIMILTVEH-SRSCLAAAENTSSVTASVGQTSGPISNGHDSDAII 320

Query: 448 ISPDESY--VAAGSADGSVYIWSISKADIVRTLKEHTAP 484
            + D +    A  +    + I+  +      +++    P
Sbjct: 321 AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 25/280 (8%), Positives = 58/280 (20%), Gaps = 41/280 (14%)

Query: 185 GLEKLAKQQVDGVVRR-SEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISG 243
              + AK +    V           A+  +P   +  +              ++  L   
Sbjct: 85  SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG--NCASSACLLFFL 142

Query: 244 GQDKSIKLWDTNTGSLSSTL--YGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV 301
               +         S         C              +    S   +L   D+ +   
Sbjct: 143 FGSSAAAGLSVPGASDDQLTKSASCFHIHPG-----AAATHYLGSCPASLAASDLAAAPA 197

Query: 302 RH------TLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC- 354
                             A   +      V + A                  I  + +  
Sbjct: 198 AAGIVGAQCTGAQNCSSQAAQAN-YPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGR 256

Query: 355 NALAFSMDGQTIFSGHIDGN-------------------LRLWDIQTGKLLSEVAAHSLA 395
            A  F   G  + +   + +                           G+    ++     
Sbjct: 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--H 314

Query: 396 AVTSISLSRSGN--IILTSGRDNLHNLFDIRSLEVCGSLR 433
              +I  ++ G       S    + +++D  S +   S+ 
Sbjct: 315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 22/257 (8%), Positives = 48/257 (18%), Gaps = 53/257 (20%)

Query: 268 GSVLDLAITHDNRSV-IAASSS----NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISS 322
           GS  D      +R   I   +        +V     G       G               
Sbjct: 20  GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL------------ 67

Query: 323 RHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQT 382
              V+                                S        G     + ++D  T
Sbjct: 68  SLAVAGHSGSDF----------------------ALASTSFARSAKGKRTDYVEVFDPVT 105

Query: 383 GKLLSEVAAHS------LAAVTSISLSRSGNIIL-TSGRDNLHNLFDIRSLEVCGSLRAT 435
              ++++             V  I    S   +L      +      +         ++ 
Sbjct: 106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA 165

Query: 436 GNRVASNWSRS---CISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG 492
                   + +     S   S  A+  A               +          +   + 
Sbjct: 166 SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI----VGAQCTGAQNCSSQAAQANY 221

Query: 493 LGKPLASADKNGVVCVW 509
            G  + +   + +    
Sbjct: 222 PGMLVWAVASSILQGDI 238

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.5 bits (181), Expect = 5e-15
 Identities = 43/264 (16%), Positives = 86/264 (32%), Gaps = 24/264 (9%)

Query: 269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR--HTLTGHTDKVCAVDVSKISSRHVV 326
            +   A   D   +    +++ +++++ +  +    H L  H  +V  VD +   S  +V
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIV 67

Query: 327 SAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDG---QTIFSGHIDGNLRLWDIQTG 383
           +   DR   VW L       T++      A          +    G     + +   +  
Sbjct: 68  TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127

Query: 384 K---LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV------------ 428
               +   +     + V S+    +  ++     D    +F     EV            
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187

Query: 429 --CGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVL 486
              G L    +         C S + S VA  S D +V +    K   V TL   T P+L
Sbjct: 188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 247

Query: 487 SCSWSGLGKPLASADKNGVVCVWT 510
           + ++      +A+   +    ++T
Sbjct: 248 AVTFITESSLVAAGH-DCFPVLFT 270

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.7 bits (171), Expect = 7e-14
 Identities = 38/290 (13%), Positives = 82/290 (28%), Gaps = 30/290 (10%)

Query: 230 SILFEYNSARLISGGQDKSIKLWDTNTGSLS--STLYGCLGSVLDLAITHDNRSVIAASS 287
              +  +  ++     +  + +++ +         L    G V  +    D+  ++   +
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 288 SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVS-AAYDRTLKVWDLHK----- 341
             N YVW +     + TL        A  V    +    +  +  R + +    +     
Sbjct: 72  DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 131

Query: 342 GYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL---------------- 385
                     S   +L +  +   + +G  D   R++     ++                
Sbjct: 132 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 191

Query: 386 -LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS 444
            L   ++ S   V  +  S +G+ +     D+   L D           AT         
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD----KKMAVATLASETLPLL 247

Query: 445 RSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLG 494
                 + S VAAG  D    +++   A    +           S  GL 
Sbjct: 248 AVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 296

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 6e-12
 Identities = 24/173 (13%), Positives = 65/173 (37%), Gaps = 8/173 (4%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT 276
              + ++  G    + F  N +R+     D ++ L D +     +TL      +L +   
Sbjct: 193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI 252

Query: 277 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336
            ++  ++AA       ++  +S   + +  G  D         +++R        +    
Sbjct: 253 TESS-LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 311

Query: 337 WDLHKGYCVNTIIFHSNC-NALAFSMDGQT----IFSGHIDGNLRLWDIQTGK 384
                G  ++++  H N  + ++    G+       +  +DG + +WD+++ +
Sbjct: 312 GSAAAGAGLDSL--HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 9e-07
 Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 27/234 (11%)

Query: 217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS--------------- 261
           CKH          S+ +  NS  L +G  D   +++      +                 
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192

Query: 262 ---TLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVS 318
                    G V  +  + +   V   S  + + + D +      TL   T  + AV   
Sbjct: 193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI 252

Query: 319 KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC-NALAFSMDGQTIFSGHIDGNLRL 377
             +   +V+A +D    ++         +     +     +           ++D     
Sbjct: 253 --TESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 310

Query: 378 WDIQTGKLLSEVAAHSLAAVTSISLSRSGNI----ILTSGRDNLHNLFDIRSLE 427
                       + H   +V+ IS+   G        T+G D   +++D+RSLE
Sbjct: 311 EG-SAAAGAGLDSLHK-NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 74.1 bits (180), Expect = 6e-15
 Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 29/190 (15%)

Query: 240 LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 299
            ++ G + + ++  T               +   A +     ++  + +  ++  D++SG
Sbjct: 172 KVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226

Query: 300 RVR--HTLTGHTDKVCAVD-------------------VSKISSRHVVSAAYDRTLKVWD 338
             +    +   T+   A                     +              R + V D
Sbjct: 227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 286

Query: 339 LHKGYCVNTIIFHSNCNALAFSMDGQTIF--SGHIDGNLRLWDIQTGKLLSEVAAHSLAA 396
              G  +         +++  S D + +       D  L + D ++G+ L  V       
Sbjct: 287 AKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG-HG 345

Query: 397 VTSISLSRSG 406
              I+ +  G
Sbjct: 346 PQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 72.1 bits (175), Expect = 2e-14
 Identities = 34/286 (11%), Positives = 82/286 (28%), Gaps = 48/286 (16%)

Query: 235 YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVL-------DLAITHDNRSVIAASS 287
              +R+  G +   ++++D  T   ++ +                 ++T D ++++    
Sbjct: 66  TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF 125

Query: 288 SNNL--YVWDVNSGRVRHTLTGHT-------DKVCAVDVSKISSRHVVSAAYDRTLKVWD 338
           S      V D+     +  L                    +  S   V+   + T ++  
Sbjct: 126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 185

Query: 339 LHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL------------ 386
               +  +  +     N  A+S     +      G +   D+ +G               
Sbjct: 186 TEVFHPEDEFLI----NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 241

Query: 387 ---------SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN 437
                     +  A+  A      L    +            + D ++ E        G+
Sbjct: 242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-EMGH 300

Query: 438 RVASNWSRSCISPDESY--VAAGSADGSVYIWSISKADIVRTLKEH 481
            + S      +S DE     A  + D ++YI      + +R++ + 
Sbjct: 301 EIDS----INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.8 bits (156), Expect = 6e-12
 Identities = 25/253 (9%), Positives = 61/253 (24%), Gaps = 35/253 (13%)

Query: 284 AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVD-------VSKISSRHVVSAAYDRTLKV 336
             ++    +V D  +GRV   + G       V         +      +        ++V
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82

Query: 337 WDLHKGYCVNTIIFHSNC--------NALAFSMDGQTIFSGHIDGN--LRLWDIQTGKLL 386
           +D         I                 + + DG+T+          + + D++     
Sbjct: 83  FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 142

Query: 387 SEVAAHSLAAV------TSISLSRSGNIIL-TSGRDNLHNLFDIRSLEVCGSLRATGNRV 439
             +       +      T     R G++     G +    +                   
Sbjct: 143 RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL------ 196

Query: 440 ASNWSRSCISPDESYVAAGSADGSVYIWSIS--KADIVRTLKEHTAPVLSCSWSGLGKPL 497
               +    S     +   +  G ++   +S   A  +  ++  T    +  W   G   
Sbjct: 197 ---INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253

Query: 498 ASADKNGVVCVWT 510
            +  +        
Sbjct: 254 VAYHRALDRIYLL 266

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 23/203 (11%), Positives = 40/203 (19%), Gaps = 22/203 (10%)

Query: 326 VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF----------SGHIDGNL 375
              A      V D   G  +  I           + DG  I            G     +
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMIDGGFL-PNPVVADDGSFIAHASTVFSRIARGERTDYV 80

Query: 376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRAT 435
            ++D  T    +++      A   +  +      LT     L       +  V       
Sbjct: 81  EVFDPVTLLPTADIELPD--APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 138

Query: 436 GNRVASNWSRSCIS---PDESYVAAGSADGSVYIWSISKADIVRTLKEHT------APVL 486
                      C                DGS+   +                      + 
Sbjct: 139 KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLIN 198

Query: 487 SCSWSGLGKPLASADKNGVVCVW 509
             ++S     L      G +   
Sbjct: 199 HPAYSQKAGRLVWPTYTGKIHQI 221

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (176), Expect = 2e-14
 Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 1/153 (0%)

Query: 218 KHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITH 277
           +  +  H     +   ++    +I+G  DK I+++D+        L G  G V  L   H
Sbjct: 5   RTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
               V  ++                     ++   C   V   + +++V+ + D TL VW
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 338 DLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH 370
            L K   V       +   +  + +    F G 
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.7 bits (158), Expect = 3e-12
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 4/159 (2%)

Query: 351 HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIIL 410
           H          +   + +G  D  +R++D    K L +++ H    V ++  +  G ++ 
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHD-GGVWALKYAHGGILVS 69

Query: 411 TSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470
            S    +      +           G+             +  Y+  GS D ++++W + 
Sbjct: 70  GSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126

Query: 471 KADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           K   V    E     L               +  +  V 
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 6e-11
 Identities = 49/318 (15%), Positives = 114/318 (35%), Gaps = 35/318 (11%)

Query: 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAI 275
               +++ H+GG  ++ + +    L+SG  D+++++WD   G  +    G   +V  L I
Sbjct: 44  KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 102

Query: 276 THDN--RSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV-------- 325
                 + ++  S  N L+VW +             D        + +   V        
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 162

Query: 326 ------------VSAAYDRTLKVWDLHKGYCVNTI-IFHSNCNALAFSMDGQTIFSGHID 372
                       VS +YD TL VWD+ +  C+  +        +  +  + +   S  +D
Sbjct: 163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 222

Query: 373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL 432
             +R+WD++ G          +  +   +       +      +      IR  +     
Sbjct: 223 TTIRIWDLENG--------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS 274

Query: 433 RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR-TLKEHTAPVLSCSWS 491
           R       +  + +     ++ + +GS +    I+++    +V   + +    + S ++ 
Sbjct: 275 RKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333

Query: 492 GLGKPLASADKNGVVCVW 509
           G    +A+ +K+G   + 
Sbjct: 334 GKTL-VAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 4e-08
 Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 30/280 (10%)

Query: 212 TVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVL 271
               T   + +     C  I+   N   +++G +D ++ +W     S            L
Sbjct: 83  KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 142

Query: 272 DLAITHDNRSVIA---------------------ASSSNNLYVWDVNSGRVRHTLTGHTD 310
                 +N   +                       S  N L VWDV   +  + L+GHTD
Sbjct: 143 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 202

Query: 311 KVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH 370
           ++    +     +  +SA+ D T+++WDL  G  + T+  H+    L    D   + +  
Sbjct: 203 RIY-STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAA 261

Query: 371 IDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG 430
                           S   ++    +++I+     + IL SG +N  N++++RS    G
Sbjct: 262 DGSIRGWDANDY----SRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS----G 313

Query: 431 SLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS 470
            L        ++   S     ++ VAA   DG  ++  + 
Sbjct: 314 KLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 2e-11
 Identities = 28/307 (9%), Positives = 79/307 (25%), Gaps = 24/307 (7%)

Query: 226 GGCASILFEYNSARLISG-GQDKSIKLWDTNTGSLS--STLYGCLGS---VLDLAITHDN 279
                + ++  +  +    G+   ++  D     +       G   S    +  +    +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 280 RSVIAASSSNNLYVWDVNSGRVRHTL--------TGHTDKVCAVDVSKISSRHVVSAAY- 330
           + + +   S  + VW     +  +++              +  +       R  V     
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137

Query: 331 DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA 390
           D          G  +  +  HS           + + S  +  +  +   Q        +
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197

Query: 391 AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI-- 448
             +     S       +         + +   I   +                 +  I  
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257

Query: 449 --SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV----LSCSWSGLGKPLASADK 502
               D    A   AD ++ +W ++ +  V+        +    +    +G G+ + S   
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSL 316

Query: 503 NGVVCVW 509
           +G +  +
Sbjct: 317 DGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 3e-11
 Identities = 29/259 (11%), Positives = 74/259 (28%), Gaps = 18/259 (6%)

Query: 228 CASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCL--------GSVLDLAITHDN 279
                    S  L SG +   + +W       S+++   +        G + D++   + 
Sbjct: 68  TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG 127

Query: 280 RSVIAASSSNNLYV--WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVW 337
           R +       + +      +SG     ++GH+ ++ A  + +      ++   D ++  +
Sbjct: 128 RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY 187

Query: 338 DLHKGYCVNTIIFH----SNCNALAFSMDGQTIFSGHIDGNLRLW---DIQTGKLLSEVA 390
                    +   H    S    + FS D                            E  
Sbjct: 188 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 247

Query: 391 AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISP 450
              +                T G D    ++D+ + +          ++  N     ++ 
Sbjct: 248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL-GNQQVGVVAT 306

Query: 451 DESYVAAGSADGSVYIWSI 469
               + + S DG++  + +
Sbjct: 307 GNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 1e-08
 Identities = 36/241 (14%), Positives = 73/241 (30%), Gaps = 13/241 (5%)

Query: 195 DGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQ--DKSIKLW 252
            G V       +    ++V    K +     G  + I +++   RL   G+  D      
Sbjct: 86  SGKVIVWGWTFDKE-SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI 144

Query: 253 DTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLY----VWDVNSGRVRHTLTGH 308
             ++G+    + G    +    +             +                  T    
Sbjct: 145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 204

Query: 309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNAL----AFSMDGQ 364
              V  V+ S  S   V++   DR +  +D   G  +  I                +D Q
Sbjct: 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 264

Query: 365 TIFSGHIDGNLRLWDIQTGKLLSEVAAHS-LAAVTSISLSRSGN-IILTSGRDNLHNLFD 422
              +   D  +R+WD+ T K + +            + +  +GN  I++   D   N ++
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

Query: 423 I 423
           +
Sbjct: 325 L 325

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.9 bits (152), Expect = 3e-11
 Identities = 32/284 (11%), Positives = 66/284 (23%), Gaps = 24/284 (8%)

Query: 246 DKSIKLWDTNTGSLSSTLYGCLG-SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT 304
              I L D +T  + + L    G +V    ++   R +        + + D+        
Sbjct: 41  AGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 98

Query: 305 LT-----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC----- 354
                         +          +  A +     + D                     
Sbjct: 99  AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 158

Query: 355 -------NALAFSMDGQT-IFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSG 406
                   A+  S      I +    G + L D      L      +   +    L  S 
Sbjct: 159 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 218

Query: 407 NIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVAS-NWSRSCISPDESYVAAGSADGSVY 465
              +T+       +          ++  TG +        + + P    V A S  G   
Sbjct: 219 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS 278

Query: 466 IWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW 509
           +  I          ++   +L    +  G  L          ++
Sbjct: 279 VALI--GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.7 bits (149), Expect = 8e-11
 Identities = 20/175 (11%), Positives = 49/175 (28%), Gaps = 13/175 (7%)

Query: 325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384
            V+      + + D         +      +    S  G+ +F    DG + + D+   +
Sbjct: 35  SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE 94

Query: 385 LLS----EVAAHSLAAVTSISLSRSGN-IILTSGRDNLHNLFDIRSLEVCGSLRATGNRV 439
             +    ++ + + +  TS          I  +     + + D  +LE        G   
Sbjct: 95  PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 154

Query: 440 A----SNWSRSC---ISPDESY-VAAGSADGSVYIWSISKADIVRTLKEHTAPVL 486
                    R      S      +      G + +   +  + ++T +      L
Sbjct: 155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL 209

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (126), Expect = 4e-08
 Identities = 32/352 (9%), Positives = 78/352 (22%), Gaps = 63/352 (17%)

Query: 216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS-----STLYGCLGSV 270
             K  ++             +   L   G+D  + + D      +               
Sbjct: 53  EIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111

Query: 271 LDLAITHDNRSVIAASSSNN-LYVWDVNSGRVRHTLT-----------GHTDKVCAVDVS 318
                  +++  IA +       + D  +   +   +               +V A+  S
Sbjct: 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 171

Query: 319 KISSR-----------HVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCN-ALAFSMDGQTI 366
                            +V       LK  ++     ++      +    +  +     +
Sbjct: 172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKL 231

Query: 367 FSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVT----SISLSRSGNIILTSGRDNLHNLFD 422
                     +    TG         +           + S  G+  +     +     D
Sbjct: 232 VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPD 291

Query: 423 IRSLEVCGSLRATGNRVASN--------------------WSRSCISPDESYVAAGSADG 462
             + ++  S  A G                           S S    D   +    +D 
Sbjct: 292 -NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP 350

Query: 463 SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPL-----ASADKNGVVCVW 509
                 I++      + E    V+   ++  G  +        D+   + V 
Sbjct: 351 EFKTLPIAE---WAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVV 399

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 62.3 bits (150), Expect = 5e-11
 Identities = 21/182 (11%), Positives = 48/182 (26%), Gaps = 8/182 (4%)

Query: 325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGK 384
            V+      + + D      V  I      +    S  G+ +     D  + + D+   +
Sbjct: 35  SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKE 94

Query: 385 L-----LSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV 439
                 +           +          I  +       + D  +LE    +   G  V
Sbjct: 95  PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 154

Query: 440 ASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLAS 499
               +++            S +   +I ++ +   V  +       L+ +  G    LA 
Sbjct: 155 ---DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD 211

Query: 500 AD 501
             
Sbjct: 212 GG 213

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 60.0 bits (144), Expect = 3e-10
 Identities = 30/304 (9%), Positives = 71/304 (23%), Gaps = 35/304 (11%)

Query: 240 LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG 299
            ++      I L D ++  +   +     +V    ++   R ++       + + D+ + 
Sbjct: 35  SVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 300 RVRHTLT-----GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN- 353
                              +          +  A +     + D         +      
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 354 -----------CNALAFSMDGQTIFSGHID-GNLRLWDIQTGKLLSEVAAHSLAAVTSIS 401
                        A+  S +         + G + L + +    L+  +  +   +    
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213

Query: 402 LSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD 461
              S    +T+  ++              +L   G         + + P    V + S  
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273

Query: 462 GSVYIWSISKAD---------IVRTLKEHTAPVLSCSWSGLGKPLA-------SADKNGV 505
           G   I  I              V  L+      L          L         A  +  
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333

Query: 506 VCVW 509
           V V+
Sbjct: 334 VAVF 337

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.2 bits (85), Expect = 0.004
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 21/122 (17%)

Query: 294 WDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA------YDRTLKVWDLHKGYCVNT 347
               + +    L G       +     SS   V           +++ V+DL        
Sbjct: 288 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 347

Query: 348 IIFHSNCNAL----------AFSMDGQTI-FS----GHIDGNLRLWDIQTGKLLSEVAAH 392
           ++  +    L           ++  G  + FS     +    L + D +T KL + V   
Sbjct: 348 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407

Query: 393 SL 394
            L
Sbjct: 408 RL 409

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 59.1 bits (141), Expect = 3e-10
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 326 VSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQTGK 384
           ++ +    + V D+       TI   SN      S DG  ++ +     ++ + D  T  
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 385 L 385
           +
Sbjct: 66  V 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 58.7 bits (140), Expect = 4e-10
 Identities = 39/288 (13%), Positives = 89/288 (30%), Gaps = 49/288 (17%)

Query: 241 ISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSG 299
           I+  +  +I + D  +  +++T+     + +   I+ D   V  A++ SN++ + D  + 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 300 RVRHTLTGHTDK-----------------------------------------VCAVDVS 318
            V  T+   +                                              + +S
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 319 KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW 378
               +  V+   D+T+ V +      +NT+    +   +A + DG  ++  + D      
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR 438
                  + +          + S          +   N+   F+  S+   G+ + T   
Sbjct: 185 IDTVTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240

Query: 439 VASNWSRS-CISPDESYV-AAGSADGSVYIWSISKADIVRTLKEHTAP 484
                     ++PD   V  A S   +V +   +   I  T+     P
Sbjct: 241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 8/82 (9%)

Query: 292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH 351
            + D  + ++   +    D    + V+    +  V+ ++  T+ V D        T+   
Sbjct: 227 SMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG 285

Query: 352 SNCNALAFSMDGQTIFSGHIDG 373
            N  A          F G I  
Sbjct: 286 KNPYASG-------QFIGSIPV 300

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 53.0 bits (127), Expect = 5e-08
 Identities = 37/334 (11%), Positives = 82/334 (24%), Gaps = 71/334 (21%)

Query: 240 LISGGQDKSIKLWDTNTGSLSSTLY-----GCLGSVLD---------------------- 272
             SGG    +++    +      +         G  +                       
Sbjct: 14  FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPH 73

Query: 273 ---LAITHDNRSVIAASSSNN-LYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVS 327
                  +D + +     +N  +    ++  +        +   +  + + K+   + V 
Sbjct: 74  ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF 133

Query: 328 AAYDRTL------KVWDLHKGYC------------VNTIIFHSNCNALAFSMDGQTIFSG 369
              +  +        + L   Y                +I   N +       G+   S 
Sbjct: 134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATST 193

Query: 370 HIDGNLRLW-DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEV 428
             +    +            V   ++      +  ++GN   T G   +  +      E 
Sbjct: 194 CYNSERAVDLAGTMRNDRDWVVVFNVER--IAAAVKAGN-FKTIGDSKVPVVDGRGESEF 250

Query: 429 CGSLRATGNRVASNWSRSCISPDESY-VAAGSADGSVYIWSISK-----------ADIVR 476
              +                SPD  Y +A G    +V + +I K            D + 
Sbjct: 251 TRYIP-VPKNPHG----LNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV 305

Query: 477 TLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT 510
              E     L  ++ G G    +   +  VC W 
Sbjct: 306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN 339

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 241 ISGGQDKSIKLWDTNT-GSLSST-LYGCLGSVLDLAITHDNRSVIAASS-SNNLYVWDVN 297
           I+  + + I +W+ N  G+L+ T +    G V  + ++ D R +         +  + + 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 298 SGRVRHTLTGHT---DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNC 354
                 T    +     +  +          V +     + V  L  G  V  +      
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127

Query: 355 N 355
           +
Sbjct: 128 D 128

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 326 VSAAYDRTLKVWDLHKGYC---VNTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQ 381
           +++   + + VW+L+          +        +  S D + ++     +  +  + I 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 382 TGKLLSEVAAHSL--AAVTSISLSRSGNIILTSGRDN 416
                   AA S    ++T IS    G  +     + 
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA 104

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 283 IAASSSNNLYVWDVNS--GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLH 340
           IA+  S  ++VW++N         +     +V  + VS       V    +  +  + + 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 341 KGYCVNTIIFHSNCNA----LAFSMDGQTIFSGHIDGNLRLW 378
                 T    S        ++    GQ +F G  +      
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 9/101 (8%), Positives = 29/101 (28%), Gaps = 7/101 (6%)

Query: 292 YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH 351
            +  V +  +       T     + ++               + V+ + +   V +    
Sbjct: 212 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 271

Query: 352 S----NCNALAFSMDGQTIF-SGHIDGNLRLWDI--QTGKL 385
                          G+ +  +G    ++ +++I  + G L
Sbjct: 272 QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 333 TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 386
           +L+  D   G  V     H    A   +  G  +F+G  DG  + +D ++GK L
Sbjct: 467 SLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 18/113 (15%), Positives = 33/113 (29%)

Query: 274 AITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRT 333
           +       V   + +  + + D           G        + +K  +     +     
Sbjct: 399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR 458

Query: 334 LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 386
           L  WD        ++   S  N    +  G  +F G  DG L  +   TG+ L
Sbjct: 459 LLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 20/54 (37%)

Query: 333 TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 386
            L  WD  K      + + ++ N    S  G  +F G   G +  +    G+ L
Sbjct: 439 ALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 20/234 (8%)

Query: 283 IAASSSNNLYVWDVNSGRVR--------HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL 334
           +A++    ++V +   G +                 KV  +  +            D   
Sbjct: 33  LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIP 92

Query: 335 KVWDLHKGYCVNTIIFHSN---CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA 391
            V  +     V T++   +    N +    D Q + +    G + L D+        +  
Sbjct: 93  VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH 152

Query: 392 HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD 451
             LA   S S+  + N +   G     +  +   L +   + +T             + D
Sbjct: 153 PMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL-LRIPVDSTDKPGEPEIFVEQTNID 211

Query: 452 ES--------YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPL 497
           +         Y A    +  V I       I+   ++      + ++       
Sbjct: 212 DFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDC 265

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 11/109 (10%), Positives = 31/109 (28%), Gaps = 2/109 (1%)

Query: 277 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKV 336
            +              +W   +      +   +  V +  +       +        +  
Sbjct: 159 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYS 218

Query: 337 WDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKL 385
            DL  G  +      ++      + DG+ I      G++ +++  T K+
Sbjct: 219 TDL-DGKDLRKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI 265

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

 Score = 37.6 bits (86), Expect = 0.004
 Identities = 13/54 (24%), Positives = 21/54 (38%)

Query: 333 TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL 386
            +K ++   G      +          +  G  +F G +DG L+  D  TG LL
Sbjct: 454 QIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 37.2 bits (85), Expect = 0.004
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 333 TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE 388
            ++ +DL  G    T               G  ++   +DG L+  D + GK L  
Sbjct: 445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	510
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.62
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.52
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.5
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.49
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.48
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.47
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.45
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.43
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.39
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.35
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.35
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.34
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.21
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.13
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.06
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.05
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.05
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.82
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.8
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.76
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.67
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.59
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.59
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.59
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.58
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.52
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.42
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.39
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.37
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.37
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.32
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.3
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.24
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.18
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	98.06
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.02
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.0
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.89
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.37
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.36
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.14
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.14
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	97.14
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.07
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.98
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.87
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	96.71
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.32
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.01
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.42
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.83
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.42
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	91.1
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	90.18
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	89.04
d1ykhb1	129	RNA polymerase II holoenzyme component SRB7 (MED21	83.33
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	82.9
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	81.88

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-45  Score=337.75  Aligned_cols=288  Identities=24%  Similarity=0.435  Sum_probs=269.4

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      ..++|+||.++|++++|+|++++|+||+.||+|+|||+.+++.+.++.+|...|.+++|+|++.++++++.++.+.+|+.
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEecCCCcE
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                      ........+.+|...+.++.++| ++..+++++.|+.+++||+.++..+..+..+. .+.+++|+|++.+|++++.||.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence            99998888999999999999999 88899999999999999999999988887664 58999999999999999999999


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCC--------------------CEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSG--------------------NIILTSGRDNLHNLFDIRSLEVCGSLRAT  435 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~--------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  435 (510)
                      ++|++.++.....+..+. ..+.++.|+|++                    .++++++.|+.|++||+++++.+..+..+
T Consensus       168 ~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         168 RVWVVATKECKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             EEEETTTCCEEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEeeccceeeEEEecCC-CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence            999999999988888776 789999988753                    46899999999999999999999999887


Q ss_pred             CCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          436 GNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       436 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ...+..    ++++|++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus       247 ~~~v~~----~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         247 DNWVRG----VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEE----EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEE----EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            766554    89999999999999999999999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-44  Score=336.27  Aligned_cols=283  Identities=17%  Similarity=0.307  Sum_probs=249.0

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee-----cccccccceeEEEEecCCCEEEEEeCCCeE
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-----TLYGCLGSVLDLAITHDNRSVIAASSSNNL  291 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  291 (510)
                      .++++ .|...|+|++|+|+|++|++|+ ||.|+|||+.++....     ...+|.+.|.+++|+|++++|++++.||.|
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i  121 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL  121 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred             EEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccc
Confidence            44445 7999999999999999999987 8999999997654322     235788999999999999999999999999


Q ss_pred             EEEEcCCC--CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEE
Q 010470          292 YVWDVNSG--RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFS  368 (510)
Q Consensus       292 ~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~  368 (510)
                      ++||+...  +....+..|...+.++.|+| ++.++++++.|+.|++||+.++.+......+ ..+.+++|++++..+++
T Consensus       122 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~  200 (337)
T d1gxra_         122 SIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99998754  45677788999999999999 8899999999999999999999988877765 55999999999999999


Q ss_pred             ecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEE
Q 010470          369 GHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCI  448 (510)
Q Consensus       369 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (510)
                      |+.||.|++||+++++.+..+...  ..|.+++|+|+++++++++.|+.+++||++++..... ..+...    +..++|
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~----i~~v~~  273 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESC----VLSLKF  273 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSC----EEEEEE
T ss_pred             ccccccccccccccceeecccccc--cceEEEEEcccccccceeccccccccccccccccccc-cccccc----cceEEE
Confidence            999999999999999988777543  7899999999999999999999999999998876543 334333    445999


Q ss_pred             cCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          449 SPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|+|++|++|+.||.|++||+.+++.+..+. |.++|.+++|+|++++|++|+.||.|+|||
T Consensus       274 s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999999999999887765 788999999999999999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-42  Score=324.42  Aligned_cols=293  Identities=20%  Similarity=0.327  Sum_probs=260.1

Q ss_pred             CCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEE
Q 010470          213 VPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLY  292 (510)
Q Consensus       213 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  292 (510)
                      ...+..++|+||.++|++++|+|++++|+||+.||+|+|||+.+++.+..+..|..+|.+++|+|++.++++++.|+.+.
T Consensus        43 ~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             cceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceee
Confidence            33467788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCC----CeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEE
Q 010470          293 VWDVNSG----RVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIF  367 (510)
Q Consensus       293 iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~  367 (510)
                      +|+....    .....+.+|..........+  ...+..+..++....++............. ..+....+.+.+.+++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccceeccccccccccccccc--ccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            9997654    34556777887777766654  667888888999999998877665555444 4588899999999999


Q ss_pred             EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEE
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSC  447 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  447 (510)
                      +|+.|+.|++||+++++.+..+..|. ..|++++|+|++++|++++.||.|++||++.......+.....  ...+..++
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~~h~-~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~--~~~i~~~~  277 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFTGHE-SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI--ICGITSVS  277 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC--CSCEEEEE
T ss_pred             EeecCceEEEEECCCCcEEEEEeCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccc--cCceEEEE
Confidence            99999999999999999999998876 8999999999999999999999999999998887766643332  23355689


Q ss_pred             EcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          448 ISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       448 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |+|++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus       278 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999998

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-43  Score=333.68  Aligned_cols=288  Identities=20%  Similarity=0.395  Sum_probs=244.1

Q ss_pred             ccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc------------------ccccceeEEEEecCCCEE
Q 010470          221 INAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY------------------GCLGSVLDLAITHDNRSV  282 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l  282 (510)
                      ..+|.+.|+|++|+|||++|++|+ |+.|+|||+.+++.+..+.                  .|...|++++|+|++++|
T Consensus        58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            347999999999999999999987 8999999999887765543                  456679999999999999


Q ss_pred             EEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcC-
Q 010470          283 IAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSM-  361 (510)
Q Consensus       283 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~-  361 (510)
                      ++|+.||.|++||...++....+.+|...|.++.+++ ++..+++++.++.+++||..+.........+....++.+.+ 
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  215 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  215 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             eeccccccccccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCC
Confidence            9999999999999999999999999999999999999 88899999999999999999999888888777777777766 


Q ss_pred             CCCEEEEecCCCcEEEEECCCCceeeeecc------cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470          362 DGQTIFSGHIDGNLRLWDIQTGKLLSEVAA------HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRAT  435 (510)
Q Consensus       362 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  435 (510)
                      ++.+|++|+.||.|++||..++.....+..      .+...|.++.|+|++.+|++++.||.|++||++++.........
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence            889999999999999999999887766542      12378999999999999999999999999999865543322211


Q ss_pred             CC--------eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEE------eCCCCcEEEee
Q 010470          436 GN--------RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSW------SGLGKPLASAD  501 (510)
Q Consensus       436 ~~--------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~s~~  501 (510)
                      ..        .....+.+++|+|+|++|++|+.||.|++||+.+++++..+.+|.+.|.++++      +|++.+|++|+
T Consensus       296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s  375 (388)
T d1erja_         296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  375 (388)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence            10        11123456999999999999999999999999999999999999999999975      57889999999


Q ss_pred             CCCeEEEcC
Q 010470          502 KNGVVCVWT  510 (510)
Q Consensus       502 ~dg~i~iwd  510 (510)
                      .||.|+||+
T Consensus       376 ~Dg~I~iW~  384 (388)
T d1erja_         376 GDCKARIWK  384 (388)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.5e-42  Score=316.79  Aligned_cols=282  Identities=16%  Similarity=0.203  Sum_probs=244.3

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe--
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV--  301 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--  301 (510)
                      +.+.+.+++++|+|+.|+.++ ++.|.+||+.++.....+.+|...|++++|+|+|++|++|+.||.|++||+.++..  
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            456677899999999999986 66799999999999888999999999999999999999999999999999988764  


Q ss_pred             eEeecCCCCceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCE-EEEecCCCcEEE
Q 010470          302 RHTLTGHTDKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQT-IFSGHIDGNLRL  377 (510)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~-l~~~~~dg~i~i  377 (510)
                      ...+..|..+|.+++|+| ++.++++++.  ++.+++|++.+++....+..+. .|.+++|+|++.+ |++|+.||.|++
T Consensus        95 ~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             EEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             ccccccccCccccccccc-cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            356788999999999999 7888888875  4569999999998888887664 5999999999885 778999999999


Q ss_pred             EECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCe---eecCceeEEEcCCCCE
Q 010470          378 WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNR---VASNWSRSCISPDESY  454 (510)
Q Consensus       378 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~  454 (510)
                      ||+++++....+..+. .+|+++.|+|+++++++++.|+.+++||+.++.....+......   ....+.+++|+|+|++
T Consensus       174 ~d~~~~~~~~~~~~~~-~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~  252 (311)
T d1nr0a1         174 FEGPPFKFKSTFGEHT-KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK  252 (311)
T ss_dssp             EETTTBEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccc-ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCE
Confidence            9999999988888876 89999999999999999999999999999998887776543222   2235667999999999


Q ss_pred             EEEEcCCCeEEEEeCCCcceeecccccCc---CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          455 VAAGSADGSVYIWSISKADIVRTLKEHTA---PVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       455 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |++|+.||.|+|||+.+++++.++..|..   .+.++.|  ++..|++++.||.|++||
T Consensus       253 l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVN  309 (311)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEe
Confidence            99999999999999999999988876543   4455555  556899999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.9e-40  Score=300.66  Aligned_cols=284  Identities=17%  Similarity=0.230  Sum_probs=228.8

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  294 (510)
                      ...+.+.||.++|++++|+|+|++|+||+.||+|++||+.+++....+. +|...|++++|+|++. +++++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEe
Confidence            3567899999999999999999999999999999999999999888774 7899999999999987 5677789999999


Q ss_pred             EcCCCCe---eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC
Q 010470          295 DVNSGRV---RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       295 d~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  371 (510)
                      +......   ......+...+.++.++| ++.++++++ ++.+.+|+...   .........+.+++|+|+++++++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             ccCCcccccccccccccccccccccccc-ccccccccc-ccccccccccc---ccccccccccccccccccccccccccc
Confidence            9865432   223345778899999998 677666655 67899999542   233344566889999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEe---ecCCCeeecCceeEEE
Q 010470          372 DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL---RATGNRVASNWSRSCI  448 (510)
Q Consensus       372 dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~  448 (510)
                      ||.|.+||+.++.........+...|++++|+|++.+|++++.|+.|++||+.++......   ..|..    .+.+++|
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~  232 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA----KVACVSW  232 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS----CEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccc
Confidence            9999999998877654433333389999999999999999999999999999876554333   23333    4556899


Q ss_pred             cCCCCEEEEEcCCCeEEEEeCCCcceee--cccc-cCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          449 SPDESYVAAGSADGSVYIWSISKADIVR--TLKE-HTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +|++.+|++|+.||.|++||+.++....  .... +...|.++.| +++.+|++++.||.|++||
T Consensus       233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             cccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            9999999999999999999998765432  2233 4456776665 5577999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-40  Score=311.90  Aligned_cols=279  Identities=13%  Similarity=0.180  Sum_probs=228.9

Q ss_pred             ccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc--ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCe-
Q 010470          225 EGGCASILFEYNSARLISGGQDKSIKLWDTNTGS--LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRV-  301 (510)
Q Consensus       225 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-  301 (510)
                      ..+|+|++|+|+|++||+|+.||.|+|||..+++  .+..+.+|.++|.+++|+|++++|++++.|+.|++||+.++.. 
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            4689999999999999999999999999998775  4677889999999999999999999999999999999987764 


Q ss_pred             -eEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeee-----ecCceeEEEEcCCCCEEEEecCCCcE
Q 010470          302 -RHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTII-----FHSNCNALAFSMDGQTIFSGHIDGNL  375 (510)
Q Consensus       302 -~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i  375 (510)
                       ...+.+|...|.++.|+| +++.|++++.|+.|++|++..........     ....+.+++|+|++.+|++|+.||.|
T Consensus        87 ~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence             445567899999999999 88999999999999999887654322221     22458999999999999999999999


Q ss_pred             EEEECCCCc------------------eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC
Q 010470          376 RLWDIQTGK------------------LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN  437 (510)
Q Consensus       376 ~i~d~~~~~------------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  437 (510)
                      ++||.....                  .......+. ..|.+++|+|+|++|++++.|+.|++||+.++..+..+..+..
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC-GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS-SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCcc-CcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            999986432                  233334444 7899999999999999999999999999999999988888776


Q ss_pred             eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCC--cceee---------------------------------------
Q 010470          438 RVASNWSRSCISPDESYVAAGSADGSVYIWSISK--ADIVR---------------------------------------  476 (510)
Q Consensus       438 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~---------------------------------------  476 (510)
                      ++.+    ++|+|++.+|++|+ |+.+.+|....  +....                                       
T Consensus       245 ~v~s----~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (371)
T d1k8kc_         245 PLLA----VTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG  319 (371)
T ss_dssp             CEEE----EEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred             ccee----eeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccce
Confidence            6554    99999999988776 66666655332  11100                                       


Q ss_pred             cccccCcCEEEEEEeCCCC----cEEEeeCCCeEEEcC
Q 010470          477 TLKEHTAPVLSCSWSGLGK----PLASADKNGVVCVWT  510 (510)
Q Consensus       477 ~~~~~~~~v~~~~~~~~~~----~l~s~~~dg~i~iwd  510 (510)
                      ....|.+.|+++++.|.+.    .|+|+|.||.|++||
T Consensus       320 ~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         320 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            0013888999999987653    488999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-38  Score=294.00  Aligned_cols=253  Identities=17%  Similarity=0.185  Sum_probs=220.2

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce--ecccccccceeEEEEecCCCEEEEEeC--CCe
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS--STLYGCLGSVLDLAITHDNRSVIAASS--SNN  290 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~  290 (510)
                      ....+.+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++...  ..+..|.++|.+++|+|+++++++++.  +..
T Consensus        48 ~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~  127 (311)
T d1nr0a1          48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF  127 (311)
T ss_dssp             SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred             CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccc
Confidence            4566778999999999999999999999999999999999887653  457789999999999999999999986  456


Q ss_pred             EEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEe
Q 010470          291 LYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSG  369 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~  369 (510)
                      +++|++.+++....+.+|...|.+++|+|.+...|++|+.||.|++||+++++....+..+ ..|.++.|+|+++++++|
T Consensus       128 ~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~  207 (311)
T d1nr0a1         128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST  207 (311)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccc
Confidence            9999999999999999999999999999954556889999999999999999988888775 469999999999999999


Q ss_pred             cCCCcEEEEECCCCceeeeeccc------ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCc
Q 010470          370 HIDGNLRLWDIQTGKLLSEVAAH------SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNW  443 (510)
Q Consensus       370 ~~dg~i~i~d~~~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  443 (510)
                      +.||.|++||..++.....+...      +...|++++|+|++++|++|+.||.|+|||+++++.+..+..+......  
T Consensus       208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~--  285 (311)
T d1nr0a1         208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ--  285 (311)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC--
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccce--
Confidence            99999999999998877665432      2378999999999999999999999999999999999888765443221  


Q ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          444 SRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       444 ~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                       .+.+.+++++|++++.||.|++||++
T Consensus       286 -~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         286 -QLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             -EEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             -EEEEEecCCEEEEEECCCEEEEEeCC
Confidence             24566677889999999999999964

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-38  Score=293.17  Aligned_cols=269  Identities=20%  Similarity=0.339  Sum_probs=234.4

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC--cceecccc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTG--SLSSTLYG  265 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~  265 (510)
                      .+++++ ||.+++|+.....    ...........+|.+.|.+++|+|+|++|++|+.||.|++||+...  .....+..
T Consensus        65 ~latg~-dg~V~iWd~~~~~----~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  139 (337)
T d1gxra_          65 HVYTGG-KGCVKVWDISHPG----NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             EEEEEC-BSEEEEEETTSTT----CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred             EEEEEE-CCEEEEEEccCCc----ccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccc
Confidence            456665 8899999854311    1112234456789999999999999999999999999999998744  45667788


Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEe
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCV  345 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  345 (510)
                      |...+.+++|+|++.++++++.|+.|++|++.++++.....+|...|.+++|++ ++..+++++.||.|++||+++++.+
T Consensus       140 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~  218 (337)
T d1gxra_         140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccceee
Confidence            999999999999999999999999999999999999999999999999999998 8889999999999999999999999


Q ss_pred             eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          346 NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       346 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      ..+.....+.+++|+|+++++++|+.||.|++||++++..... ..+. ..|++++|+|++++|++++.||.|++||+.+
T Consensus       219 ~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~-~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHE-SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-CCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccceEEEEEcccccccceeccccccccccccccccccc-cccc-cccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            9988888999999999999999999999999999988876543 3444 8899999999999999999999999999999


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      ++.+..+... .    .+.+++|+|++++|++|+.||+|+|||+
T Consensus       297 ~~~~~~~~~~-~----~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         297 GASIFQSKES-S----SVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CCEEEEEECS-S----CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEccCC-C----CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9888776533 2    3445899999999999999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-37  Score=285.70  Aligned_cols=286  Identities=26%  Similarity=0.515  Sum_probs=229.8

Q ss_pred             CccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEE
Q 010470          214 PSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYV  293 (510)
Q Consensus       214 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  293 (510)
                      +.++...++||.+.|.+ +++++|++|+||+.||+|+|||+.+++++.++.+|.+.|.+++|+|+  +|++++.|+.+++
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~   81 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV   81 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccc
Confidence            34577889999999865 46778999999999999999999999999999999999999999874  8999999999999


Q ss_pred             EEcCCCCeeEeecCCCCceEE--------------------------------------EEEecCCCCEEEEEeCCCcEE
Q 010470          294 WDVNSGRVRHTLTGHTDKVCA--------------------------------------VDVSKISSRHVVSAAYDRTLK  335 (510)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~--------------------------------------i~~~~~~~~~l~s~~~dg~i~  335 (510)
                      |+............+...+..                                      ..+.+ ....+++++.|+.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          82 WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTSCEE
T ss_pred             cccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc-ccceeeeecCCCeEE
Confidence            998765433332222221111                                      11122 345677888889999


Q ss_pred             EEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC
Q 010470          336 VWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD  415 (510)
Q Consensus       336 iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  415 (510)
                      +||......+..+..+. .....+.+++.++++|+.||.|++||++.++.+..+..+. ..+.++.++  +++|++++.|
T Consensus       161 ~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~s~s~d  236 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHT-NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK--DNILVSGNAD  236 (342)
T ss_dssp             EEEGGGTEEEEEECCCS-SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEEEEEE--TTEEEEEETT
T ss_pred             EeecccceeeEEEcCcc-cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccc-cceeEEecC--CCEEEEEcCC
Confidence            99988888777776554 3445556689999999999999999999999998888876 778877765  5799999999


Q ss_pred             CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccc-----ccCcCEEEEEE
Q 010470          416 NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLK-----EHTAPVLSCSW  490 (510)
Q Consensus       416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~  490 (510)
                      +.|++||+...+....+..+.....   ...+++++++++++|+.||+|++||+.+++.+..+.     +|...|++++|
T Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~  313 (342)
T d2ovrb2         237 STVKIWDIKTGQCLQTLQGPNKHQS---AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA  313 (342)
T ss_dssp             SCEEEEETTTCCEEEEECSTTSCSS---CEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred             CEEEEEecccccccccccccceeee---ceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEE
Confidence            9999999999888777765443222   124566678899999999999999999999887663     57788999999


Q ss_pred             eCCCCcEEEeeCCCe----EEEcC
Q 010470          491 SGLGKPLASADKNGV----VCVWT  510 (510)
Q Consensus       491 ~~~~~~l~s~~~dg~----i~iwd  510 (510)
                      +|++.+|++|+.||+    |++||
T Consensus       314 s~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         314 SNTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             CSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             CCCCCEEEEEeCCCCCeeEEEEEe
Confidence            999999999999985    89986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=279.02  Aligned_cols=279  Identities=20%  Similarity=0.398  Sum_probs=216.5

Q ss_pred             ceeeccccccce-EEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          217 CKHKINAHEGGC-ASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       217 ~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      ...+|+||.+.| +|++|  +|++|+||+.||+|+|||+.+++.+.++.+|.++|++++|+|+ .+|++++.|+.|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            356799999886 56555  5789999999999999999999999999999999999999985 5899999999999999


Q ss_pred             cCCCCeeEeecCCCCc--eEEEEEecCCCCEEEEEeCCCcEEEEEC----------------------------------
Q 010470          296 VNSGRVRHTLTGHTDK--VCAVDVSKISSRHVVSAAYDRTLKVWDL----------------------------------  339 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~s~~~dg~i~iwd~----------------------------------  339 (510)
                      +...........+...  .....+.+ ++..+++++.|+.|++||+                                  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            9877655444332222  22233333 4445555555555555554                                  


Q ss_pred             -----------------------------CCCeEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 010470          340 -----------------------------HKGYCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEV  389 (510)
Q Consensus       340 -----------------------------~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  389 (510)
                                                   .+++.+...... ..+.++.++|++..+++++.||.|++||+.++..+..+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence                                         444444333322 34778999999999999999999999999999999999


Q ss_pred             cccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          390 AAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       390 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      ..|. ..|.++.++  +++|++++.||.|++||+.+.......  +...+..   ..++++++.++++|+ ||.|+|||+
T Consensus       240 ~~h~-~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~---~~~~~~~~~~l~~g~-d~~i~vwd~  310 (355)
T d1nexb2         240 QGHT-ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSA---ITTFYVSDNILVSGS-ENQFNIYNL  310 (355)
T ss_dssp             CCCS-SCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE--ECTTCCC---CCEEEECSSEEEEEE-TTEEEEEET
T ss_pred             cccc-ccccccccc--cceeeeeecccccccccccccceeccc--ccCCceE---EEEEcCCCCEEEEEe-CCEEEEEEC
Confidence            8877 889999886  479999999999999999987654433  3222221   245778888887775 899999999


Q ss_pred             CCcceee-cccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          470 SKADIVR-TLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       470 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      .+++++. .+.+|..+|.+++|+|+ ..+++++.||.++||
T Consensus       311 ~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         311 RSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             TTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             CCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence            9999885 56779999999999987 478889999997766

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-35  Score=272.32  Aligned_cols=267  Identities=22%  Similarity=0.412  Sum_probs=243.8

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.||.+++|+...         ..+..++.+|.+.|.+++|+|++.++++++.++.+.+|+.........+.+|
T Consensus        30 ~~l~s~s~Dg~i~iWd~~~---------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (317)
T d1vyhc1          30 SVMVSASEDATIKVWDYET---------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH  100 (317)
T ss_dssp             SEEEEEESSSCEEEEETTT---------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCC
T ss_pred             CEEEEEeCCCeEEEEECCC---------CCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccc
Confidence            4578889999999998543         3467788999999999999999999999999999999999999888889999


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      ...+.++.|+|++..+++++.|+.+++||+.+++....+.+|...+.++.|+| ++.+|++++.||.|++|++.++....
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~  179 (317)
T d1vyhc1         101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKA  179 (317)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeE
Confidence            99999999999999999999999999999999999999999999999999999 88999999999999999999998888


Q ss_pred             eeeec-CceeEEEEcCC--------------------CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCC
Q 010470          347 TIIFH-SNCNALAFSMD--------------------GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS  405 (510)
Q Consensus       347 ~~~~~-~~i~~i~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~  405 (510)
                      .+..+ ..+.++.++|+                    +..+++|+.||.|++||+++++++..+..+. ..|.+++|+|+
T Consensus       180 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~  258 (317)
T d1vyhc1         180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSG  258 (317)
T ss_dssp             EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEECSS
T ss_pred             EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC-CCEEEEEECCC
Confidence            77655 34777777765                    4578899999999999999999999998877 89999999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          406 GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      +++|++++.||.|++||+.+++.+..+..|...+.    +++|+|++++|++|+.||+|+|||
T Consensus       259 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~----~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         259 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT----SLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE----EEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEE----EEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999988876654    499999999999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=263.43  Aligned_cols=274  Identities=26%  Similarity=0.490  Sum_probs=225.3

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      .+..+..|...|+|++|  +|++||||+.||+|+|||+.+++++.++.+|.+.|++++|  ++++|++|+.|+.|++|++
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            44556778899998764  7899999999999999999999999999999999998876  6789999999999999999


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee---eec-CceeEEEEcCCCCEEEEecCC
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI---IFH-SNCNALAFSMDGQTIFSGHID  372 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~-~~i~~i~~~~~~~~l~~~~~d  372 (510)
                      ..+........+.......  .+ ....++++..++.+.+||..........   ..+ ..+.++.+  ....+++++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d  157 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHL--RF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD  157 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEE--EC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred             ccccccccccccccccccc--cc-cccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCC
Confidence            9988877776555544433  33 5678899999999999999876533322   222 33555554  46678899999


Q ss_pred             CcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCC
Q 010470          373 GNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDE  452 (510)
Q Consensus       373 g~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  452 (510)
                      +.|++||+++++.+..+..+. ..+..+.++  +.++++++.||.|++||+++...+..+..+...+      ..+++++
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v------~~~~~~~  228 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHK-RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV------RCIRFDN  228 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE------EEEECCS
T ss_pred             CceeeecCCCCcEEEEEcccc-cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceee------eeccccc
Confidence            999999999999998888776 677777664  5789999999999999999999888887766554      3578899


Q ss_pred             CEEEEEcCCCeEEEEeCCCc---------ceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          453 SYVAAGSADGSVYIWSISKA---------DIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       453 ~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .+|++|+.||.|++||+...         ..+..+.+|.++|++++|+  +.+|++||.||+|++||
T Consensus       229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            99999999999999997543         3566778899999999994  56899999999999998

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.9e-35  Score=270.17  Aligned_cols=281  Identities=13%  Similarity=0.151  Sum_probs=224.4

Q ss_pred             ceEEEEEecCCCEEEEeeCCC-eEEEEeCCCC--cceeccccc-ccceeEEEEec--CCCEEEEEeCCCeEEEEEcCCCC
Q 010470          227 GCASILFEYNSARLISGGQDK-SIKLWDTNTG--SLSSTLYGC-LGSVLDLAITH--DNRSVIAASSSNNLYVWDVNSGR  300 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~--~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~  300 (510)
                      .+++++|+|+|+.|+.++.+. .|+.|+....  .....+.+| ...|++++|+|  ++.+|++|+.||+|+|||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            468899999999999887554 3566765443  335566777 46899999998  56799999999999999997654


Q ss_pred             ee--------EeecCCCCceEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCE-EEE
Q 010470          301 VR--------HTLTGHTDKVCAVDVSKISSRHVVSAAY--DRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQT-IFS  368 (510)
Q Consensus       301 ~~--------~~~~~~~~~v~~i~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~-l~~  368 (510)
                      ..        ..+..|.++|.+++|++ ++.++++++.  ++.+.+|+..+++++..+..+ ..+.+++|+|++.+ +++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence            22        23456889999999999 7777776654  678999999999998888765 45999999998875 678


Q ss_pred             ecCCCcEEEEECCCCceeeeeccc--ccccEEEEEEcCC-CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCcee
Q 010470          369 GHIDGNLRLWDIQTGKLLSEVAAH--SLAAVTSISLSRS-GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSR  445 (510)
Q Consensus       369 ~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~i~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  445 (510)
                      ++.||.+++||...++....+..+  +...|.+++|+|+ +.++++++.|+.|++||+++++.+..+..+...+...+.+
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s  257 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA  257 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceee
Confidence            999999999999888776665443  2367999999996 6889999999999999999999999998887776654333


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcC--EE--EEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          446 SCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAP--VL--SCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       446 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~--~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      +++ |+|++|++++.||.|+|||+.+++++..+..|...  +.  ++.|.++ .+|++++.||.|++||
T Consensus       258 ~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         258 LSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEE
T ss_pred             eec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEE
Confidence            333 68999999999999999999999998887665443  33  4455443 4789999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-34  Score=274.30  Aligned_cols=280  Identities=22%  Similarity=0.358  Sum_probs=222.0

Q ss_pred             HhhhhcCCceEEecccccccccc---------cCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAE---------STVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS  258 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  258 (510)
                      .+++++ |+.+++|+........         ............+|...|++++|+|+|++|++|+.||.|++||...++
T Consensus        76 ~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~  154 (388)
T d1erja_          76 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK  154 (388)
T ss_dssp             EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccc
Confidence            456665 8899999754321100         001111233456788999999999999999999999999999999999


Q ss_pred             ceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          259 LSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      .+..+.+|...|.++.|++++..+++++.++.+++||..+.........+ ....++.+++.++.+|++++.||.|++||
T Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~  233 (388)
T d1erja_         155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWD  233 (388)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeeeeeccccccccccccc-cccccccccCCCCCeEEEEcCCCeEEEee
Confidence            99999999999999999999999999999999999999988877776654 44556667776889999999999999999


Q ss_pred             CCCCeEeeeeee--------cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCcee------------eeecccccccEE
Q 010470          339 LHKGYCVNTIIF--------HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLL------------SEVAAHSLAAVT  398 (510)
Q Consensus       339 ~~~~~~~~~~~~--------~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------~~~~~~~~~~i~  398 (510)
                      ..++.....+..        ...|.+++|+|++.+|++|+.||.|++||++++...            .....+. ..|.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~  312 (388)
T d1erja_         234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK-DFVL  312 (388)
T ss_dssp             TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS-SCEE
T ss_pred             cccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeeccccc-ceEE
Confidence            999887776642        245899999999999999999999999999765432            2223333 7899


Q ss_pred             EEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecC--ceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          399 SISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASN--WSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      +++|+|++++|++|+.||.|++||+.+++.+..+.+|...+...  .....|+|++.+|++|+.||+|+||+++
T Consensus       313 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999999999999999999999999999999887766541  1112367899999999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.2e-35  Score=275.10  Aligned_cols=237  Identities=16%  Similarity=0.202  Sum_probs=198.0

Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC--eeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR--VRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYC  344 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  344 (510)
                      ..+|+|++|+|++++|++|+.||.|+|||+.+++  .+..+.+|.++|.+++|+| ++++|++++.|+.|++||+.++..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeeccccc
Confidence            4689999999999999999999999999998775  5677889999999999999 889999999999999999988765


Q ss_pred             eeeee--e-cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceee---eecccccccEEEEEEcCCCCEEEEEecCCcE
Q 010470          345 VNTII--F-HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS---EVAAHSLAAVTSISLSRSGNIILTSGRDNLH  418 (510)
Q Consensus       345 ~~~~~--~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  418 (510)
                      ...+.  . ...+.+++|+|+++.|++|+.|+.|++|++.......   .....+...|.+++|+|++.+|++++.|+.+
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            54443  2 3569999999999999999999999999987654322   2222333789999999999999999999999


Q ss_pred             EEEEcCCce------------------eeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc
Q 010470          419 NLFDIRSLE------------------VCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE  480 (510)
Q Consensus       419 ~i~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  480 (510)
                      ++||.....                  .......+.    ..+..++|+|+|++|++++.||.|++||+.++..+..+..
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  241 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC----GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  241 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS----SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCcc----CcEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence            999986432                  112222222    2345689999999999999999999999999999999999


Q ss_pred             cCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          481 HTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       481 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      |..+|.+++|+|++.+|++| .|+.+++|
T Consensus       242 ~~~~v~s~~fs~d~~~la~g-~d~~~~~~  269 (371)
T d1k8kc_         242 ETLPLLAVTFITESSLVAAG-HDCFPVLF  269 (371)
T ss_dssp             SSCCEEEEEEEETTEEEEEE-TTSSCEEE
T ss_pred             ccccceeeeecCCCCEEEEE-cCCceEEE
Confidence            99999999999999877665 57776665

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-34  Score=264.36  Aligned_cols=269  Identities=19%  Similarity=0.286  Sum_probs=219.0

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      ++++++.||.++|++++|+|    |+||+.||+|++||+.++     ..+|...|.++.+++++ .+++++.|+++++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccccc
Confidence            46789999999999999987    999999999999998764     35789999999998765 579999999999999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCC-c
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDG-N  374 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~  374 (510)
                      +...+       ....+.++.+.+ ++..++ .+.++.+.+|+..++..+..+.....+.  +++|++..+++++.++ .
T Consensus        74 ~~~~~-------~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~  142 (287)
T d1pgua2          74 ITKHE-------FGSQPKVASANN-DGFTAV-LTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQNYVAVGLEEGNT  142 (287)
T ss_dssp             EEEEE-------CSSCEEEEEECS-SSEEEE-EETTSEEEEEETTTCCEEEEEECSSCEE--EEEECSSEEEEEETTTSC
T ss_pred             ccccc-------cccceeeeeecc-CCceEE-Eeecccceeeeccceeeeeeccccceee--eeeccCcceeeeccccce
Confidence            75422       334566777776 554444 4557789999999999888887766554  5567788888777665 6


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE-eecCCCeeecCceeEEEcC---
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS-LRATGNRVASNWSRSCISP---  450 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~---  450 (510)
                      +++|++........+.......+++++|+|++.+|++++.||.|++||+.++..... +..|...+    .+++|+|   
T Consensus       143 v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v----~~~~~~p~~~  218 (287)
T d1pgua2         143 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI----NAISWKPAEK  218 (287)
T ss_dssp             EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE----EEEEECCCC-
T ss_pred             eeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc----ceeeeccccc
Confidence            999999877776666665558899999999999999999999999999998876543 34444444    3477765   


Q ss_pred             -------CCCEEEEEcCCCeEEEEeCCC-cceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          451 -------DESYVAAGSADGSVYIWSISK-ADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       451 -------~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                             ++.+|++|+.||+|+|||+.+ ++.+..+.+|...|++++|+|++ .|++++.||.|++|+
T Consensus       219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             ccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence                   457899999999999999977 56677788999999999999986 689999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=262.02  Aligned_cols=253  Identities=14%  Similarity=0.198  Sum_probs=208.5

Q ss_pred             ccceeeccccc-cceEEEEEec--CCCEEEEeeCCCeEEEEeCCCCccee--------cccccccceeEEEEecCCCEEE
Q 010470          215 STCKHKINAHE-GGCASILFEY--NSARLISGGQDKSIKLWDTNTGSLSS--------TLYGCLGSVLDLAITHDNRSVI  283 (510)
Q Consensus       215 ~~~~~~~~~h~-~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~  283 (510)
                      ......+.+|. ..|++++|+|  +|.+|++|+.||+|+|||+..+....        .+..|.++|.+++|++++++++
T Consensus        52 ~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  131 (325)
T d1pgua1          52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  131 (325)
T ss_dssp             SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccc
Confidence            34566778885 6799999998  67899999999999999997655432        2346788999999999999998


Q ss_pred             EEeC--CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec----CceeEE
Q 010470          284 AASS--SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH----SNCNAL  357 (510)
Q Consensus       284 ~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~i  357 (510)
                      +++.  ++.+.+|+..+++.+..+.+|...|.+++|+|.+...+++++.||.+++||....+....+...    ..+.++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v  211 (325)
T d1pgua1         132 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV  211 (325)
T ss_dssp             EEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred             eeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEe
Confidence            8764  6789999999999999999999999999999955567889999999999999888776665443    348999


Q ss_pred             EEcCC-CCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEc---CCCCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470          358 AFSMD-GQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLS---RSGNIILTSGRDNLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       358 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  433 (510)
                      +|+|+ +.+|++|+.||.|++||+++++.+..+..+. .++.++.|+   |+|.+|++++.|+.|+|||+++++.+..+.
T Consensus       212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         212 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ-EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT-BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eeccccceeccccccccceeeeeeccccccccccccc-cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence            99996 6889999999999999999999999888765 555544444   689999999999999999999999999888


Q ss_pred             cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          434 ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       434 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      .+..........+.+.+ +.+|++|+.||.|+|||+
T Consensus       291 ~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         291 LDKQQLGNQQVGVVATG-NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CCTTCGGGCEEEEEEEE-TTEEEEEETTSCEEEEET
T ss_pred             ecCCcccCeEEEEEECC-CCEEEEEECCCEEEEEEC
Confidence            77765544333333333 347889999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-34  Score=265.06  Aligned_cols=292  Identities=9%  Similarity=0.074  Sum_probs=219.0

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee---cccccccceeEEEEecCC-CEEEEEeCCCeEE
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS---TLYGCLGSVLDLAITHDN-RSVIAASSSNNLY  292 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~  292 (510)
                      .+...++|.+.|++|+|+|++++|++|+.||+|+|||+.++....   ...+|.++|.+++|+|++ .+|++|+.||.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            456778999999999999999999999999999999997665432   334799999999999875 5788999999999


Q ss_pred             EEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee----c---CceeEEEEcCCCCE
Q 010470          293 VWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF----H---SNCNALAFSMDGQT  365 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~---~~i~~i~~~~~~~~  365 (510)
                      +|++..+........+...+....+.+.+...+++++.++.+++||++.+........    .   .....+.+.+.+..
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            9999988777666655554443333333788999999999999999865433222221    1   22456777888999


Q ss_pred             EEEecCCCcEEEEECCCCceeeeec--ccccccEEEEEEc-CCCCEEEEEecCCcEEEEEcCCceeee------Eee---
Q 010470          366 IFSGHIDGNLRLWDIQTGKLLSEVA--AHSLAAVTSISLS-RSGNIILTSGRDNLHNLFDIRSLEVCG------SLR---  433 (510)
Q Consensus       366 l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~i~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~------~~~---  433 (510)
                      +++++.||.|++||++.........  ......+.+..+. +++..+++++.||.+.+|+........      .+.   
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence            9999999999999998765433222  1122445555554 567899999999999999986432211      111   


Q ss_pred             --cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          434 --ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       434 --~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                        .........+.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+..++|+|+|++|++++.|+.+++|
T Consensus       243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence              111122234567999999999999999999999999999999888643 245567888899999999888877666

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-32  Score=253.83  Aligned_cols=267  Identities=26%  Similarity=0.423  Sum_probs=230.5

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCc----ceec
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGS----LSST  262 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~  262 (510)
                      ..+++++.||.+++|+...         ......+.+|.++|.+++|+|++.++++|+.|+.+.+|+.....    ....
T Consensus        68 ~~l~sgs~Dg~v~iWd~~~---------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  138 (340)
T d1tbga_          68 RLLVSASQDGKLIIWDSYT---------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             SEEEEEETTTEEEEEETTT---------TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEE
T ss_pred             CEEEEEECCCceeeeeccc---------ceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccccccccee
Confidence            4578889999999998543         34677889999999999999999999999999999999986543    3344


Q ss_pred             ccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 010470          263 LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG  342 (510)
Q Consensus       263 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~  342 (510)
                      +.+|.......... .+..+.....+.....|.............+...+....+.+ ...++++++.|+.|++||++++
T Consensus       139 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~  216 (340)
T d1tbga_         139 LAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG  216 (340)
T ss_dssp             ECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTT
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEeecCceEEEEECCCC
Confidence            56676666655544 556788888999999999888877777788888999999988 8889999999999999999999


Q ss_pred             eEeeeeeec-CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc-cccccEEEEEEcCCCCEEEEEecCCcEEE
Q 010470          343 YCVNTIIFH-SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNL  420 (510)
Q Consensus       343 ~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i  420 (510)
                      .++..+..+ ..|++++|+|++.+|++|+.||.|++||++.......+.. .....+.+++|+|++++|++|+.||.|++
T Consensus       217 ~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~i  296 (340)
T d1tbga_         217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV  296 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEE
T ss_pred             cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEE
Confidence            999988876 4599999999999999999999999999999887776543 23367999999999999999999999999


Q ss_pred             EEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 010470          421 FDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWS  468 (510)
Q Consensus       421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  468 (510)
                      ||+.+++.+..+.+|...+.    +++|+|++.+|++|+.||.|+|||
T Consensus       297 wd~~~~~~~~~~~~H~~~V~----~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         297 WDALKADRAGVLAGHDNRVS----CLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EETTTCCEEEEECCCSSCEE----EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EECCCCcEEEEEcCCCCCEE----EEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999988876654    499999999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-32  Score=249.18  Aligned_cols=242  Identities=18%  Similarity=0.292  Sum_probs=197.4

Q ss_pred             CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCcEE
Q 010470          257 GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLK  335 (510)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~  335 (510)
                      |...+.+.||.++|++++|+|++++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++. +++++.|+.++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEE
Confidence            45677889999999999999999999999999999999999999888874 6899999999999 554 56677799999


Q ss_pred             EEECCCCeEe----eeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE
Q 010470          336 VWDLHKGYCV----NTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT  411 (510)
Q Consensus       336 iwd~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  411 (510)
                      +|+.......    ........+.+++++|++..+++++ ++.+.+|+..  +.... ...  ..+.+++|+|+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~-~~~--~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEV-PIS--YNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEE-ECS--SCEEEEEECTTSCEEEE
T ss_pred             EeccCCccccccccccccccccccccccccccccccccc-cccccccccc--ccccc-ccc--ccccccccccccccccc
Confidence            9998653221    1122345688999999999877665 5689999853  22222 222  56889999999999999


Q ss_pred             EecCCcEEEEEcCCceeeeEe-ecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee---ecccccCcCEEE
Q 010470          412 SGRDNLHNLFDIRSLEVCGSL-RATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV---RTLKEHTAPVLS  487 (510)
Q Consensus       412 ~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~  487 (510)
                      ++.|+.|.+||+.+....... ..+..    .+.+++|+|++.+|++++.||.|++||+.++...   ..+.+|..+|++
T Consensus       154 g~~dg~i~~~d~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~  229 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASVSEVKTIVHPA----EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC  229 (299)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEEECSS----CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE
T ss_pred             ccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999887654432 23333    3455899999999999999999999999887654   445679999999


Q ss_pred             EEEeCCCCcEEEeeCCCeEEEcC
Q 010470          488 CSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       488 ~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ++|+|++++|++|+.||.|++||
T Consensus       230 l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         230 VSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccceEEEcCCCEEEEEE
Confidence            99999999999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-32  Score=256.92  Aligned_cols=288  Identities=16%  Similarity=0.213  Sum_probs=210.8

Q ss_pred             eeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce------ecccccccceeEEEE---ec----CCCEEEEE
Q 010470          219 HKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS------STLYGCLGSVLDLAI---TH----DNRSVIAA  285 (510)
Q Consensus       219 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~v~~~~~---~~----~~~~l~~~  285 (510)
                      ...++|.+.|.++++++  ++++|||.|++|+|||..+....      .....|...+..+..   .+    ++.+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            45689999999999874  69999999999999997654321      112234433333222   11    23467788


Q ss_pred             eCCCeEEEEEcCCCCeeEee----------cCCCCceEEEEEecCC----CCEEEEEeCCCcEEEEECCCCe--------
Q 010470          286 SSSNNLYVWDVNSGRVRHTL----------TGHTDKVCAVDVSKIS----SRHVVSAAYDRTLKVWDLHKGY--------  343 (510)
Q Consensus       286 ~~d~~i~iwd~~~~~~~~~~----------~~~~~~v~~i~~~~~~----~~~l~s~~~dg~i~iwd~~~~~--------  343 (510)
                      +.||.|++|++........+          ..+...+..+.+.+..    ..++++++.||.+.+||+....        
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999998654321111          1244567778887632    4678999999999999974221        


Q ss_pred             -------Eeeeee----ecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc-----ccccEEEEEEcCCCC
Q 010470          344 -------CVNTII----FHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH-----SLAAVTSISLSRSGN  407 (510)
Q Consensus       344 -------~~~~~~----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~  407 (510)
                             ......    ....+.+++|+|++ +|++|+.||.|++||+.+++++..+...     +..+|.+++|+|+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                   001111    11237899999998 8899999999999999999887665431     237899999999999


Q ss_pred             EEEEEecCC---cEEEEEcCCceeeeEeecCCC---------eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470          408 IILTSGRDN---LHNLFDIRSLEVCGSLRATGN---------RVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV  475 (510)
Q Consensus       408 ~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  475 (510)
                      +|++++.|+   .|++||+.++..+..+.....         .+...+.+++|+|+|++|++|+.||+|+|||+.+++++
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence            999999987   489999999988877753211         12234566999999999999999999999999999999


Q ss_pred             ecccccCcC---------------------EEEEEEeCCC----------CcEEEeeCCCeEEEc
Q 010470          476 RTLKEHTAP---------------------VLSCSWSGLG----------KPLASADKNGVVCVW  509 (510)
Q Consensus       476 ~~~~~~~~~---------------------v~~~~~~~~~----------~~l~s~~~dg~i~iw  509 (510)
                      .++.+|...                     +.++.|.+.+          ..|++++.|+.|++|
T Consensus       325 ~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~  389 (393)
T d1sq9a_         325 TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF  389 (393)
T ss_dssp             EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             EEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEE
Confidence            999888643                     4566665543          237888888888887

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-29  Score=235.72  Aligned_cols=267  Identities=27%  Similarity=0.490  Sum_probs=210.6

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.||.+++|+...         .++..++.+|.++|.+++|+|+  +|++|+.|+.+++|+............+
T Consensus        28 ~~l~sgs~Dg~i~vWd~~~---------~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~   96 (342)
T d2ovrb2          28 NRIVSGSDDNTLKVWSAVT---------GKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGH   96 (342)
T ss_dssp             TEEEEEETTSCEEEEETTT---------CCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CEEEEEeCCCeEEEEECCC---------CCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceeccccc
Confidence            3578899999999998543         4577889999999999999975  9999999999999998765443222222


Q ss_pred             ccce--------------------------------------eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCC
Q 010470          267 LGSV--------------------------------------LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGH  308 (510)
Q Consensus       267 ~~~v--------------------------------------~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  308 (510)
                      ...+                                      ....+.+....+++++.|+.|++||......+..+.+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  176 (342)
T d2ovrb2          97 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH  176 (342)
T ss_dssp             SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCC
T ss_pred             ceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCc
Confidence            1111                                      11233445667888999999999999999999999999


Q ss_pred             CCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCc-eeEEEEcCCCCEEEEecCCCcEEEEECCCCceee
Q 010470          309 TDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSN-CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS  387 (510)
Q Consensus       309 ~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  387 (510)
                      ...+..+.+   ++.++++++.||.|++||+..++++..+..+.. +.++.+  ++++|++|+.||.|++||+...+...
T Consensus       177 ~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~  251 (342)
T d2ovrb2         177 TNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQ  251 (342)
T ss_dssp             SSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEec--CCCEEEEEcCCCEEEEEecccccccc
Confidence            888777655   568999999999999999999999888877654 566555  56799999999999999999988887


Q ss_pred             eeccccc--ccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCC-eeecCceeEEEcCCCCEEEEEcCCCe-
Q 010470          388 EVAAHSL--AAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGN-RVASNWSRSCISPDESYVAAGSADGS-  463 (510)
Q Consensus       388 ~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~dg~-  463 (510)
                      .+..+..  ..+.++.+  +++++++++.||.|++||+++++.+..+..... .....+.+++|+|++.+|++|+.||+ 
T Consensus       252 ~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~  329 (342)
T d2ovrb2         252 TLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE  329 (342)
T ss_dssp             EECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred             cccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCC
Confidence            7765432  45555555  567999999999999999999999888764332 23334666999999999999999985 


Q ss_pred             ---EEEEeCCC
Q 010470          464 ---VYIWSISK  471 (510)
Q Consensus       464 ---i~iwd~~~  471 (510)
                         |++||++.
T Consensus       330 ~~~l~~~Df~~  340 (342)
T d2ovrb2         330 ETKLLVLDFDV  340 (342)
T ss_dssp             CCEEEEEECCC
T ss_pred             eeEEEEEeCCC
Confidence               99999763

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.9e-30  Score=239.01  Aligned_cols=241  Identities=25%  Similarity=0.405  Sum_probs=197.4

Q ss_pred             eecccccccce-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE
Q 010470          260 SSTLYGCLGSV-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD  338 (510)
Q Consensus       260 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd  338 (510)
                      ..++.+|...| +|+  ++++++|++|+.||.|+|||+.+++++.++.+|.++|.+++|+|  +++|++|+.||.|++|+
T Consensus         5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~--~~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           5 RTTLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET--TTEEEEEETTCCEEEEE
T ss_pred             cEEECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC--CCEEEEEeccccccccc
Confidence            35688998886 544  55688999999999999999999999999999999999999987  46899999999999999


Q ss_pred             CCCCeEeeeeeecCc---eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccccc--------------------c
Q 010470          339 LHKGYCVNTIIFHSN---CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL--------------------A  395 (510)
Q Consensus       339 ~~~~~~~~~~~~~~~---i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------------------~  395 (510)
                      ...............   .....+.+++.++++++.||.|++||+.++...........                    .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            999887776655433   45667788999999999999999999987654332211100                    0


Q ss_pred             cEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470          396 AVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV  475 (510)
Q Consensus       396 ~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  475 (510)
                      ......+.++++++++++.|+.+++||+.+++.......+......    +.++|++.++++++.||.|++||+.++..+
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS----TIYDHERKRCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE----EEEETTTTEEEEEETTSCEEEEETTTCCEE
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeeeecccccccc----ccccccceeeecccccceEEeeeccccccc
Confidence            1112345667899999999999999999999988877766655543    889999999999999999999999999999


Q ss_pred             ecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          476 RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       476 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..+.+|..+|.+++|++  ++|++++.||.|++||
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd  269 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWD  269 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEE
T ss_pred             ccccccccccccccccc--ceeeeeeccccccccc
Confidence            99999999999999965  5899999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=5.8e-30  Score=240.53  Aligned_cols=270  Identities=10%  Similarity=0.094  Sum_probs=208.8

Q ss_pred             EEEEec-CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC--eEEEEEcCCCCeeEeec
Q 010470          230 SILFEY-NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN--NLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       230 ~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~  306 (510)
                      .-.||| ||+++|+++ +|.|++||+.++.....  +|...|.+++|+|||++|++++.+.  .|++||+.+++.. .+.
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~   82 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE   82 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence            467999 999999987 57999999998876653  6899999999999999998877553  7999999877654 566


Q ss_pred             CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-ceeEEEEcCCCCEEEEe----------cCCCcE
Q 010470          307 GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-NCNALAFSMDGQTIFSG----------HIDGNL  375 (510)
Q Consensus       307 ~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~----------~~dg~i  375 (510)
                      .|...|.+++|+| ++++|++++.++.+.+|++.++.....+..+. .+.+++|+|+|++|+.+          ..++.+
T Consensus        83 ~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          83 ENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             CCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             CCCceEEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence            7999999999999 89999999999999999999999888777664 58899999999999854          344569


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceee-------eEeecCCCee---------
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVC-------GSLRATGNRV---------  439 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~---------  439 (510)
                      ++||+.+++........  ..+.++.|+|+|++|++++.++.+.+||.......       ..+..+....         
T Consensus       162 ~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  239 (360)
T d1k32a3         162 HVYDMEGRKIFAATTEN--SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS  239 (360)
T ss_dssp             EEEETTTTEEEECSCSS--SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred             eeeccccCceeeecccc--cccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence            99999887765544433  67889999999999999999999999987543221       1111100000         


Q ss_pred             -----------------------ecCceeEEEcCCC-------------CEEEEEcCCCeEEEEeCCCcceeecccccCc
Q 010470          440 -----------------------ASNWSRSCISPDE-------------SYVAAGSADGSVYIWSISKADIVRTLKEHTA  483 (510)
Q Consensus       440 -----------------------~~~~~~~~~s~~~-------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  483 (510)
                                             ......+...+++             .++++++.++.|++||+.+++..    .|.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~  315 (360)
T d1k32a3         240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKN  315 (360)
T ss_dssp             GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEE
T ss_pred             CcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecC
Confidence                                   0001112222222             23455567889999999887542    3556


Q ss_pred             CEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          484 PVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       484 ~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .|.+++|+|||++|++++.||.|++||
T Consensus       316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         316 NLTDLRLSADRKTVMVRKDDGKIYTFP  342 (360)
T ss_dssp             EEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CcCEEEECCCCCEEEEEECCCeEEEEE
Confidence            799999999999999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.6e-29  Score=233.53  Aligned_cols=253  Identities=10%  Similarity=0.056  Sum_probs=191.5

Q ss_pred             cceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee---EeecCCCCceEEEEEecCCCCEEEEEeCCCcE
Q 010470          258 SLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR---HTLTGHTDKVCAVDVSKISSRHVVSAAYDRTL  334 (510)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i  334 (510)
                      +.+....+|...|++|+|+|++++|++|+.||+|+|||+.++...   ....+|..+|.+++|+|.++.+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            345667899999999999999999999999999999999876533   23346999999999999667789999999999


Q ss_pred             EEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec----cc-ccccEEEEEEcCCCC
Q 010470          335 KVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA----AH-SLAAVTSISLSRSGN  407 (510)
Q Consensus       335 ~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~-~~~~i~~i~~~~~~~  407 (510)
                      ++|++..+...........  .....+.+++..+++++.++.+++||++.+.......    .+ .......+.+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            9999988776666554432  4455566788999999999999999987544332221    11 113455667788899


Q ss_pred             EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee------------
Q 010470          408 IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV------------  475 (510)
Q Consensus       408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~------------  475 (510)
                      .+++++.|+.|++||++.......................+++++..+++++.||.+.+|+.......            
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            99999999999999998765443333222221111222334567889999999999999997653221            


Q ss_pred             ---ecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          476 ---RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       476 ---~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                         .....|...|++++|+|++++|++|+.||.|++||
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence               11234677899999999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-28  Score=232.78  Aligned_cols=266  Identities=13%  Similarity=0.170  Sum_probs=201.6

Q ss_pred             HhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEe------c-CCCEEEEeeCCCeEEEEeCCCCcce
Q 010470          188 KLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFE------Y-NSARLISGGQDKSIKLWDTNTGSLS  260 (510)
Q Consensus       188 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s------~-~~~~l~s~~~dg~i~iwd~~~~~~~  260 (510)
                      .+++++.|+.+++|+...   .....|.........|...+..+.+.      + ++.++++++.||.|++|++......
T Consensus        26 ~l~S~S~D~~iriWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~  102 (393)
T d1sq9a_          26 FTVSCSGDGYLKVWDNKL---LDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET  102 (393)
T ss_dssp             EEEEEETTSEEEEEESBC---CTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred             EEEEEECCCeEEEEECCC---CCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCce
Confidence            467888999999998543   22334444444455566554443322      1 2346889999999999997544322


Q ss_pred             ec----------ccccccceeEEEEecC-----CCEEEEEeCCCeEEEEEcCCCC------------------eeEeecC
Q 010470          261 ST----------LYGCLGSVLDLAITHD-----NRSVIAASSSNNLYVWDVNSGR------------------VRHTLTG  307 (510)
Q Consensus       261 ~~----------~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~------------------~~~~~~~  307 (510)
                      ..          ...+...+..++|.++     +.++++++.||.+.+|++....                  .......
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (393)
T d1sq9a_         103 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT  182 (393)
T ss_dssp             CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS
T ss_pred             eeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccC
Confidence            11          1234556778888776     4678999999999999985321                  1111234


Q ss_pred             CCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-------cCceeEEEEcCCCCEEEEecCCCc---EEE
Q 010470          308 HTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-------HSNCNALAFSMDGQTIFSGHIDGN---LRL  377 (510)
Q Consensus       308 ~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~dg~---i~i  377 (510)
                      +...+.+++|+| ++ +|++|+.||+|++||+.+++++..+..       ...|++++|+|+|++|++|+.|+.   |++
T Consensus       183 ~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~l  260 (393)
T d1sq9a_         183 PSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL  260 (393)
T ss_dssp             SCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeee
Confidence            556789999998 44 899999999999999999988776643       245999999999999999998874   899


Q ss_pred             EECCCCceeeeec-------------ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCce
Q 010470          378 WDIQTGKLLSEVA-------------AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWS  444 (510)
Q Consensus       378 ~d~~~~~~~~~~~-------------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  444 (510)
                      ||+.+++.+..+.             +|. ..|++++|+|++++|++++.|++|++||+.+++.+..+.+|...+.....
T Consensus       261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~-~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~  339 (393)
T d1sq9a_         261 YETEFGERIGSLSVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED  339 (393)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBS-SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred             cccccceeeeeeccccccccceeeeeccc-CceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCcc
Confidence            9999998877764             344 78999999999999999999999999999999999999999887765555


Q ss_pred             eEEEcCCCCEEEEEc
Q 010470          445 RSCISPDESYVAAGS  459 (510)
Q Consensus       445 ~~~~s~~~~~l~~~~  459 (510)
                      .++|+|++..+++++
T Consensus       340 ~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         340 ILAVDEHGDSLAEPG  354 (393)
T ss_dssp             CCCBCTTSCBCSSCC
T ss_pred             EEEECCCCCEEEEcc
Confidence            678999998877554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=5e-26  Score=207.79  Aligned_cols=261  Identities=16%  Similarity=0.188  Sum_probs=214.6

Q ss_pred             EEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEE-EEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEe
Q 010470          240 LISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVI-AASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVS  318 (510)
Q Consensus       240 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  318 (510)
                      +++++.|++|.+||+.+++.+.++... ..+..++|+|||++|+ +++.++.|.+||+.+++.+..+..+. .+..+.++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccc
Confidence            356678999999999999998887643 4578999999999885 55678999999999999999988765 46889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCCcEEEEECCCCceeeeecccccccE
Q 010470          319 KISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWDIQTGKLLSEVAAHSLAAV  397 (510)
Q Consensus       319 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i  397 (510)
                      +.+...++++..++.+.+|+..++.....+.....+.+++++|+|..++ ++..++.+.+|+..++.....+...  ..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  160 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSP  160 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSE
T ss_pred             cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC--CCc
Confidence            9444566677778899999999999999998888899999999999876 5666888999999999988887766  568


Q ss_pred             EEEEEcCCCCEEEEEecC-CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC---CCeEEEEeCCCcc
Q 010470          398 TSISLSRSGNIILTSGRD-NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA---DGSVYIWSISKAD  473 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~  473 (510)
                      ..+.++|++..+++++.+ +.+.+|+...............+.     .+++++++..+++++.   ++.|++||+.+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPS-----GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEE-----EEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             eEEEeeccccceeeecccccccccccccceeeeecccccCCcc-----eeeccccccccccccccceeeeeeeeecCCCe
Confidence            899999999988887765 567788887777766665554433     3789999998776543   4689999999999


Q ss_pred             eeecccccCcCEEEEEEeCCCCcE-EEeeCCCeEEEcC
Q 010470          474 IVRTLKEHTAPVLSCSWSGLGKPL-ASADKNGVVCVWT  510 (510)
Q Consensus       474 ~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd  510 (510)
                      .+..+..+ ..+.+++|+|||++| ++++.||.|.+||
T Consensus       236 ~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         236 ITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            98887654 467999999999976 6778899999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.7e-27  Score=211.43  Aligned_cols=234  Identities=23%  Similarity=0.443  Sum_probs=191.9

Q ss_pred             eecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 010470          260 SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDL  339 (510)
Q Consensus       260 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~  339 (510)
                      +.....|...|+|+.  +++++|++|+.||.|+|||+.+++++.++.+|.+.|.+++|   ++++|++|+.||.|++|++
T Consensus         8 i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2           8 IHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             EECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEES
T ss_pred             EeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeeccccccccccccc
Confidence            344556778888765  58999999999999999999999999999999999999987   4679999999999999999


Q ss_pred             CCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceee---eecccccccEEEEEEcCCCCEEEEEecCC
Q 010470          340 HKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLS---EVAAHSLAAVTSISLSRSGNIILTSGRDN  416 (510)
Q Consensus       340 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~~d~  416 (510)
                      ..+............ ...+.+....++++..++.+.+||........   .+..+. ..+..+.+.  ...+++++.|+
T Consensus        83 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~~~s~d~  158 (293)
T d1p22a2          83 NTGEMLNTLIHHCEA-VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-AAVNVVDFD--DKYIVSASGDR  158 (293)
T ss_dssp             SSCCEEEEECCCCSC-EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS-SCEEEEEEE--TTEEEEEETTS
T ss_pred             ccccccccccccccc-cccccccccceeecccccceeEeeccccccccccccccccc-cccccceec--ccccccccCCC
Confidence            988877666555443 33445567788999999999999998765332   233333 677766665  46788999999


Q ss_pred             cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc
Q 010470          417 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP  496 (510)
Q Consensus       417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  496 (510)
                      .+++||+++++.+..+..+...+.      .+++++.++++++.||.|++||+.+...+..+.+|...+..  +++++.+
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~  230 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIA------CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKR  230 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEE------EEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSE
T ss_pred             ceeeecCCCCcEEEEEcccccccc------cccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceE
Confidence            999999999999888877665543      35566789999999999999999999999999988888875  5567889


Q ss_pred             EEEeeCCCeEEEcC
Q 010470          497 LASADKNGVVCVWT  510 (510)
Q Consensus       497 l~s~~~dg~i~iwd  510 (510)
                      |++|+.||.|++||
T Consensus       231 l~sg~~dg~i~iwd  244 (293)
T d1p22a2         231 IVSGAYDGKIKVWD  244 (293)
T ss_dssp             EEEEETTSCEEEEE
T ss_pred             EEEEcCCCEEEEEE
Confidence            99999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.4e-27  Score=214.30  Aligned_cols=251  Identities=14%  Similarity=0.178  Sum_probs=194.8

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceeccccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGC  266 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  266 (510)
                      ..+++++.||.+++|+...              ...+|.+.|.+++|++++ .+++++.|++|++|++...+       .
T Consensus        22 s~l~sgs~Dg~v~~Wd~~~--------------~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~   79 (287)
T d1pgua2          22 NPLISGSYDGRIMEWSSSS--------------MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------F   79 (287)
T ss_dssp             TTTEEEETTSCEEETTTTE--------------EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------C
T ss_pred             CcEEEEeCCCeEEEEECCC--------------CCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc-------c
Confidence            3488999999999998543              235899999999998764 68999999999999976432       2


Q ss_pred             ccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCC-CcEEEEECCCCeEe
Q 010470          267 LGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYD-RTLKVWDLHKGYCV  345 (510)
Q Consensus       267 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~  345 (510)
                      ...+..+++++++..+++ +.++.+.+|+..++.....+..+ ..+.  ++++ ++..+++++.+ +.+++|++......
T Consensus        80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~  154 (287)
T d1pgua2          80 GSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLN-SPGS--AVSL-SQNYVAVGLEEGNTIQVFKLSDLEVS  154 (287)
T ss_dssp             SSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECS-SCEE--EEEE-CSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred             ccceeeeeeccCCceEEE-eecccceeeeccceeeeeecccc-ceee--eeec-cCcceeeeccccceeeeeecccccee
Confidence            345677888888766655 45667899999999888887643 3443  4555 55666666665 57999999766655


Q ss_pred             eeeee--cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCC----------CCEEEEEe
Q 010470          346 NTIIF--HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS----------GNIILTSG  413 (510)
Q Consensus       346 ~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~----------~~~l~~~~  413 (510)
                      ..+..  ...+++++|+|++.+|++|+.||.|++||+.++.........+...|.+++|+|.          +.++++|+
T Consensus       155 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs  234 (287)
T d1pgua2         155 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS  234 (287)
T ss_dssp             EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred             eeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec
Confidence            55443  3569999999999999999999999999999988766544444488999999874          46899999


Q ss_pred             cCCcEEEEEcCC-ceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          414 RDNLHNLFDIRS-LEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       414 ~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      .|+.|++||+++ .+.+..+.+|...+.    .++|+|++ .|++++.||.|++|++
T Consensus       235 ~D~~i~iw~~~~~~~~~~~~~~h~~~V~----~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         235 LDTNIFIYSVKRPMKIIKALNAHKDGVN----NLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEESSCTTCCEEETTSSTTCEE----EEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCeEEEEeCCCCCCeE----EEEECCCC-EEEEEECCCeEEEEEE
Confidence            999999999976 555565666665554    48999986 5788889999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.8e-26  Score=216.45  Aligned_cols=253  Identities=14%  Similarity=0.161  Sum_probs=198.9

Q ss_pred             ccccceEEEEEecCCCEEEEeeCCC--eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC
Q 010470          223 AHEGGCASILFEYNSARLISGGQDK--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR  300 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  300 (510)
                      +|.+.|.+++|+|||++|++++.+.  .|++||..++.. ..+..|...|.+++|+|++++|++++.++.+++|++.+++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            6999999999999999998776553  799999987765 4567899999999999999999999999999999999999


Q ss_pred             eeEeecCCCCceEEEEEecCCCCEEEEEe----------CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEec
Q 010470          301 VRHTLTGHTDKVCAVDVSKISSRHVVSAA----------YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  370 (510)
                      ....+..|...+.+++|+| ++.+|+.++          .++.+++||+.++...........+..++|+|+|+.|++++
T Consensus       119 ~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         119 PTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             EEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             eeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEe
Confidence            9999999999999999999 778877543          34579999999998877777777789999999999999999


Q ss_pred             CCCcEEEEECCCCcee-------eeeccc-----------------------------------ccccEEEEEEcCCCC-
Q 010470          371 IDGNLRLWDIQTGKLL-------SEVAAH-----------------------------------SLAAVTSISLSRSGN-  407 (510)
Q Consensus       371 ~dg~i~i~d~~~~~~~-------~~~~~~-----------------------------------~~~~i~~i~~~~~~~-  407 (510)
                      .++.+.+||.......       ..+..+                                   ..+....+...+++. 
T Consensus       198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (360)
T d1k32a3         198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL  277 (360)
T ss_dssp             SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE
T ss_pred             CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCce
Confidence            9999999986433211       100000                                   001223343333322 


Q ss_pred             ------------EEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470          408 ------------IILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV  475 (510)
Q Consensus       408 ------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  475 (510)
                                  ++++++.++.+++||+.+++.....        ..+..++|+|||++|++++.||.|++||+.+++..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK--------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             EEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE--------EEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred             EEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec--------CCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcc
Confidence                        2344556789999999887653221        12345899999999999999999999999999888


Q ss_pred             ecccccCcCE
Q 010470          476 RTLKEHTAPV  485 (510)
Q Consensus       476 ~~~~~~~~~v  485 (510)
                      .++..+..|+
T Consensus       350 ~~~~~d~~~~  359 (360)
T d1k32a3         350 RTVETDKRPL  359 (360)
T ss_dssp             EECCCCSSCE
T ss_pred             eEEEeccccc
Confidence            8877666554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.2e-26  Score=223.15  Aligned_cols=307  Identities=11%  Similarity=0.055  Sum_probs=214.0

Q ss_pred             hhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCccee-----ccc
Q 010470          190 AKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSS-----TLY  264 (510)
Q Consensus       190 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~  264 (510)
                      +..+.||.+++|+...         .+.+.++..|. .+..++|||||++|++++.||+|++||+.+++...     ...
T Consensus        36 V~~~~dg~v~vwD~~t---------~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          36 VTLRDAGQIALVDGDS---------KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             EEETTTTEEEEEETTT---------CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             EEEcCCCEEEEEECCC---------CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC
Confidence            4567789999998554         45677888775 58999999999999999999999999999887533     234


Q ss_pred             ccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEE-----------EEEecCCCCEEEEEeCCC
Q 010470          265 GCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCA-----------VDVSKISSRHVVSAAYDR  332 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~-----------i~~~~~~~~~l~s~~~dg  332 (510)
                      +|.+.+.+++|+|||+++++++ .++.+.+||..++.+...+..|...+..           +.+++.....+++....+
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence            6677778888999999876654 7899999999999988877766544443           444442222222233334


Q ss_pred             cEEEEECCCCeE--eeeeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCCceeeeeccccc-ccEEEEEEcCCCC-
Q 010470          333 TLKVWDLHKGYC--VNTIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGKLLSEVAAHSL-AAVTSISLSRSGN-  407 (510)
Q Consensus       333 ~i~iwd~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~-~~i~~i~~~~~~~-  407 (510)
                      .+.+++...+..  +..+.....+..+.++|++++++++. .+..+.+++..+++.+........ .......+.+.+. 
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence            455555544332  22334445588999999999887665 566799999999988776653321 1222233333222 


Q ss_pred             EE--EEEecCCcEEEEEcCC-------ceeeeEeecCCCeeecCceeEEEcCCCCEEEE-------EcCCCeEEEEeCCC
Q 010470          408 II--LTSGRDNLHNLFDIRS-------LEVCGSLRATGNRVASNWSRSCISPDESYVAA-------GSADGSVYIWSISK  471 (510)
Q Consensus       408 ~l--~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-------~~~dg~i~iwd~~~  471 (510)
                      .+  +..+.++.+.+|+...       ++....+.++...+..    ++|+|+|++|++       ++.+++|+|||+.+
T Consensus       266 ~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~----v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t  341 (426)
T d1hzua2         266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF----IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  341 (426)
T ss_dssp             EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCC----EECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             ceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeE----EEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence            11  2234566777776543       4666777777666554    899999999995       45678999999999


Q ss_pred             cceeecc---------cccCcCEEEEEEeCCCCcEE-Ee----eCCCeEEEcC
Q 010470          472 ADIVRTL---------KEHTAPVLSCSWSGLGKPLA-SA----DKNGVVCVWT  510 (510)
Q Consensus       472 ~~~~~~~---------~~~~~~v~~~~~~~~~~~l~-s~----~~dg~i~iwd  510 (510)
                      ++...++         ..|...|.+++|||||++++ ++    +.+|.|+|||
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         342 LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             TTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             CCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence            8766543         24566799999999999764 33    4578899997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=5.7e-27  Score=224.76  Aligned_cols=307  Identities=11%  Similarity=0.051  Sum_probs=212.7

Q ss_pred             hhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcce-----eccc
Q 010470          190 AKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLS-----STLY  264 (510)
Q Consensus       190 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~  264 (510)
                      ++.+.+|.+.+|+...         .++..++..|. .+..++|||||+++++++.||.|.+||+.+++..     ....
T Consensus        36 v~~~d~g~v~v~D~~t---------~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          36 VTLRDAGQIALIDGST---------YEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             EEETTTTEEEEEETTT---------CCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             EEEcCCCEEEEEECCC---------CcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence            5667788888888544         45777787774 6999999999999999999999999999887642     2234


Q ss_pred             ccccceeEEEEecCCCEE-EEEeCCCeEEEEEcCCCCeeEeecCC-----------CCceEEEEEecCCCCEEEEEeCCC
Q 010470          265 GCLGSVLDLAITHDNRSV-IAASSSNNLYVWDVNSGRVRHTLTGH-----------TDKVCAVDVSKISSRHVVSAAYDR  332 (510)
Q Consensus       265 ~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~~l~s~~~dg  332 (510)
                      +|.+.+.+..|+|||++| ++++.++.|.+||..+++++..+..|           ......+.++|.+..++++...++
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~  185 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  185 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence            566677777889999986 56778999999999999988776543           345667888884445567777789


Q ss_pred             cEEEEECCCCeEee--eeeecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCCceeeeecccc----cccEEEEEEcCC
Q 010470          333 TLKVWDLHKGYCVN--TIIFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGKLLSEVAAHS----LAAVTSISLSRS  405 (510)
Q Consensus       333 ~i~iwd~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~i~~~~~  405 (510)
                      .|.+||..+++...  .+.....+..+.|+|+|+++++++ .++.+.++|..+++.+..+....    ........+...
T Consensus       186 ~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  265 (432)
T d1qksa2         186 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF  265 (432)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT
T ss_pred             eEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCC
Confidence            99999998876544  344445688999999999877665 45578999998877765543321    122333333333


Q ss_pred             CCEEEEEe-cCCcEEEEEcCCc-------eeeeEeecCCCee---------------------ecCceeEEEcCCCCEEE
Q 010470          406 GNIILTSG-RDNLHNLFDIRSL-------EVCGSLRATGNRV---------------------ASNWSRSCISPDESYVA  456 (510)
Q Consensus       406 ~~~l~~~~-~d~~i~i~d~~~~-------~~~~~~~~~~~~~---------------------~~~~~~~~~s~~~~~l~  456 (510)
                      +....+.. .++.+.+|+....       +....+..+....                     ......+++ ||++.++
T Consensus       266 g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la  344 (432)
T d1qksa2         266 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMT  344 (432)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCC
T ss_pred             CceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eechhhc
Confidence            33333332 2556666654321       1222222111100                     000112444 8899999


Q ss_pred             EEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEee-----CCCeEEEcC
Q 010470          457 AGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASAD-----KNGVVCVWT  510 (510)
Q Consensus       457 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-----~dg~i~iwd  510 (510)
                      +++.|+.+++|++.++..   +..|...|.+++|+|||++++.+.     .+|.|.|||
T Consensus       345 ~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         345 GDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             CSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             ccccCCceEecccccccc---cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            999999999999866533   335677899999999999875543     468899997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=3.5e-24  Score=195.37  Aligned_cols=271  Identities=16%  Similarity=0.207  Sum_probs=215.2

Q ss_pred             hhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccccccc
Q 010470          191 KQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYGCLGS  269 (510)
Q Consensus       191 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  269 (510)
                      +.+.++.+.+|+...         .+...++... +.+..++|+|||++| ++++.++.|.+||+.+++.+..+..+. .
T Consensus         7 ~~~~~~~v~v~D~~t---------~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~   75 (301)
T d1l0qa2           7 ANSESDNISVIDVTS---------NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-S   75 (301)
T ss_dssp             EETTTTEEEEEETTT---------TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-S
T ss_pred             EECCCCEEEEEECCC---------CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-c
Confidence            355678889988544         2344444433 457899999999987 566778999999999999988887665 4


Q ss_pred             eeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeee
Q 010470          270 VLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTI  348 (510)
Q Consensus       270 v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  348 (510)
                      +..+.|++++..+++++ .++.+.+|+..+++....+..+ ..+.++.++|++...++++..++.+.+|+..++..+..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence            68899999999776655 6779999999999888888754 567789999944445566777889999999999999999


Q ss_pred             eecCceeEEEEcCCCCEEEEecC-CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec---CCcEEEEEcC
Q 010470          349 IFHSNCNALAFSMDGQTIFSGHI-DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR---DNLHNLFDIR  424 (510)
Q Consensus       349 ~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~i~d~~  424 (510)
                      .....+..+.++|++..+++++. ++.+.+|+.............  ..+..+.|++++..+++++.   ++.|.+||+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         155 SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             ccCCCceEEEeeccccceeeecccccccccccccceeeeeccccc--CCcceeeccccccccccccccceeeeeeeeecC
Confidence            88888999999999998887665 466778887777766666555  67888999999998876654   3689999999


Q ss_pred             CceeeeEeecCCCeeecCceeEEEcCCCCEE-EEEcCCCeEEEEeCCCcceeecccc
Q 010470          425 SLEVCGSLRATGNRVASNWSRSCISPDESYV-AAGSADGSVYIWSISKADIVRTLKE  480 (510)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~  480 (510)
                      +++....+.....+     ..++|+|||++| ++++.++.|++||+.+++.+.++..
T Consensus       233 t~~~~~~~~~~~~~-----~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         233 TNKITARIPVGPDP-----AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             TTEEEEEEECCSSE-----EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEEcCCCCE-----EEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            99988887655433     348999999986 5777899999999999998888753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=8.3e-25  Score=202.86  Aligned_cols=261  Identities=10%  Similarity=0.091  Sum_probs=201.1

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceecccc--cccceeEEEEecCCCEEE-EEeCCCeEEEEEcCCCCeeEeecCCCC----
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYG--CLGSVLDLAITHDNRSVI-AASSSNNLYVWDVNSGRVRHTLTGHTD----  310 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~----  310 (510)
                      +++++++.|++|.|||+.+++.+.++..  +...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            4899999999999999999999888764  345678999999999885 556789999999999999888776543    


Q ss_pred             -ceEEEEEecCCCCEEEEEe------------CCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEE
Q 010470          311 -KVCAVDVSKISSRHVVSAA------------YDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRL  377 (510)
Q Consensus       311 -~v~~i~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  377 (510)
                       .+..++|+| ++..+++++            .++.+.+||..++.....+.....+.+++|+|+|+++++++.  .+.+
T Consensus        82 ~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred             cceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Ccce
Confidence             345789999 777777665            367899999999999999988888999999999999998864  4788


Q ss_pred             EECCCCceeeeecccccccEEEEEEcCC------------------------CCEEEEEecCCcEEEEEcCCceeeeEee
Q 010470          378 WDIQTGKLLSEVAAHSLAAVTSISLSRS------------------------GNIILTSGRDNLHNLFDIRSLEVCGSLR  433 (510)
Q Consensus       378 ~d~~~~~~~~~~~~~~~~~i~~i~~~~~------------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~  433 (510)
                      ||..+++....+..+..  .....++|+                        ......+..++.+.+|+..++.......
T Consensus       159 ~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             eeeecCcEEEEeecCCc--cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            99998887776654321  111111111                        1112222334568889988877654332


Q ss_pred             -cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          434 -ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       434 -~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                       .+...    ...+.++|++.+++++  ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.||.|.+||
T Consensus       237 ~~~~~~----~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         237 RIMDVF----YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EECSSC----EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             cCCCcc----eEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence             22222    2337889999998866  4789999999999988875 556789999999999999999999999997

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=1.8e-24  Score=201.37  Aligned_cols=268  Identities=10%  Similarity=0.078  Sum_probs=199.1

Q ss_pred             EEEecCCCEEEEeeCCCeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEE-eCCCeEEEEEcCCCCeeEeecCC
Q 010470          231 ILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAA-SSSNNLYVWDVNSGRVRHTLTGH  308 (510)
Q Consensus       231 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~  308 (510)
                      ++|++++++|++++.+++|.+||+.+++.+.++. .+...+.+++|+|||++++++ +.++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4789999999999999999999999999988876 456678899999999988655 47899999999999888776533


Q ss_pred             C------CceEEEEEecCCCCEEEEEe------------CCCcEEEEECCCCeEeeeee---ecCceeEEEEcCCCCEEE
Q 010470          309 T------DKVCAVDVSKISSRHVVSAA------------YDRTLKVWDLHKGYCVNTII---FHSNCNALAFSMDGQTIF  367 (510)
Q Consensus       309 ~------~~v~~i~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~  367 (510)
                      .      ..+..++|+| ++.++++++            .++.+.+||..++.....+.   .+..+..+.+++++..++
T Consensus        82 ~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             ccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            2      2356789999 777776654            46788999988776544433   234466777887887666


Q ss_pred             EecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCE--------------------------EEEEecCCcEEEE
Q 010470          368 SGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNI--------------------------ILTSGRDNLHNLF  421 (510)
Q Consensus       368 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--------------------------l~~~~~d~~i~i~  421 (510)
                      ++   +.+.+|++.+++.+..+..+  ..+..+.++|++..                          ++++..++.+.+|
T Consensus       161 ~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         161 AG---PDIYKMDVKTGKYTVALPLR--NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             ES---SSEEEECTTTCCEEEEECST--TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             eC---CcceEEEccCCCEEEEEecC--CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            53   46899999998888776544  22333344444433                          2333445567778


Q ss_pred             EcCCceeeeEee-cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          422 DIRSLEVCGSLR-ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       422 d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      |+.++....... .+....    ..+.+++++.+++.+.. +.|.+||..+++.+..+. +...+.+++|+|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~  309 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELY----FTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLG  309 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCE----EEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEE
T ss_pred             ECCCCceEEEEeeccccee----EEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEE
Confidence            887766554433 222222    23678888888877664 579999999999888776 44578999999999999999


Q ss_pred             eCCCeEEEcC
Q 010470          501 DKNGVVCVWT  510 (510)
Q Consensus       501 ~~dg~i~iwd  510 (510)
                      +.||.|++||
T Consensus       310 ~~d~~v~v~D  319 (346)
T d1jmxb_         310 GTFNDLAVFN  319 (346)
T ss_dssp             SBSSEEEEEE
T ss_pred             eCCCcEEEEE
Confidence            9999999997

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.3e-23  Score=194.78  Aligned_cols=272  Identities=13%  Similarity=0.074  Sum_probs=207.0

Q ss_pred             hhhhcCCceEEecccccccccccCCCccceeeccc--cccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceecccc
Q 010470          189 LAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINA--HEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLYG  265 (510)
Q Consensus       189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~  265 (510)
                      +++++.|+.+.+|+...         .++..++..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..
T Consensus         4 ~vt~~~d~~v~v~D~~s---------~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEK---------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEETTTEEEEEETTT---------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEcCCCEEEEEECCC---------CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            45677889999998654         245555544  44568899999999987 5667899999999999998877665


Q ss_pred             cc-----cceeEEEEecCCCEEEEEeC------------CCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEE
Q 010470          266 CL-----GSVLDLAITHDNRSVIAASS------------SNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSA  328 (510)
Q Consensus       266 ~~-----~~v~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~  328 (510)
                      +.     ..+..++|+|+++++++++.            ++.+.+||..++.....+.. ...+.++.|+| ++.+++++
T Consensus        75 ~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~  152 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL  152 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE
T ss_pred             CCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEE
Confidence            43     34568999999999988763            57899999999988888874 45678899999 78888887


Q ss_pred             eCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCE------------------------EEEecCCCcEEEEECCCCc
Q 010470          329 AYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQT------------------------IFSGHIDGNLRLWDIQTGK  384 (510)
Q Consensus       329 ~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~------------------------l~~~~~dg~i~i~d~~~~~  384 (510)
                      +  +.+.+||..++.....+..+.......+.|++..                        ...+..++.+.+||..++.
T Consensus       153 ~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (337)
T d1pbyb_         153 G--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             S--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             c--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence            6  4578899999988887765433222223332221                        1122334568899998887


Q ss_pred             eeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeE
Q 010470          385 LLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSV  464 (510)
Q Consensus       385 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i  464 (510)
                      .......+....+..+.++|++.+++++  ++.+.+||+.+++.+..+.....     +.+++|+|||++|++++.+|.|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dG~~l~v~~~~~~i  303 (337)
T d1pbyb_         231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS-----YYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC-----CCEEEECTTSCEEEEESBSSEE
T ss_pred             EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCC-----EEEEEECCCCCEEEEEeCCCcE
Confidence            6655444444778889999999998776  47899999999999888765432     3448999999999999999999


Q ss_pred             EEEeCCCcceeecccc
Q 010470          465 YIWSISKADIVRTLKE  480 (510)
Q Consensus       465 ~iwd~~~~~~~~~~~~  480 (510)
                      +|||..+++.+.+++.
T Consensus       304 ~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         304 AAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEETTTCCEEEEEEC
T ss_pred             EEEECCCCcEEEEEEC
Confidence            9999999999888764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.1e-23  Score=200.13  Aligned_cols=268  Identities=10%  Similarity=0.034  Sum_probs=196.8

Q ss_pred             EEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEee-----cCCCCceE
Q 010470          239 RLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTL-----TGHTDKVC  313 (510)
Q Consensus       239 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~  313 (510)
                      ++++.+.||.|+|||+.+++.+.++..|. .+..++|+|||+++++++.|+.|++||+.+++.....     .+|.+.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            56788889999999999999999998764 5899999999999999999999999999988754332     34556677


Q ss_pred             EEEEecCCCCEE-EEEeCCCcEEEEECCCCeEeeeeeecC------------ceeEEEEcCCCCEEEEe-cCCCcEEEEE
Q 010470          314 AVDVSKISSRHV-VSAAYDRTLKVWDLHKGYCVNTIIFHS------------NCNALAFSMDGQTIFSG-HIDGNLRLWD  379 (510)
Q Consensus       314 ~i~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~i~~i~~~~~~~~l~~~-~~dg~i~i~d  379 (510)
                      ++.|+| +++++ +++..++.+.+||..++.+......+.            ....+.+++++..++.. ...+.+.+++
T Consensus       113 s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         113 SKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             CCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             eeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            778888 66665 566689999999999998877665432            23456666777666543 3345666666


Q ss_pred             CCCCceeeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC--E-E
Q 010470          380 IQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--Y-V  455 (510)
Q Consensus       380 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~-l  455 (510)
                      ...+.............+..+.|+|++++++++. .++.+.+++..+++................  ..+.+.+.  . .
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  269 (426)
T d1hzua2         192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG--ANFVHPKYGPVWS  269 (426)
T ss_dssp             CSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCC--EEEEETTTEEEEE
T ss_pred             eccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccce--eeeecCCCCceEE
Confidence            6555433322222336789999999999887776 456789999999998877765443332211  23333222  2 2


Q ss_pred             EEEcCCCeEEEEeCCC-------cceeecccccCcCEEEEEEeCCCCcEEE-------eeCCCeEEEcC
Q 010470          456 AAGSADGSVYIWSISK-------ADIVRTLKEHTAPVLSCSWSGLGKPLAS-------ADKNGVVCVWT  510 (510)
Q Consensus       456 ~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s-------~~~dg~i~iwd  510 (510)
                      +..+.|+.+.+|+...       ++....+.+|...+..++|+|++++|++       ++.|++|+|||
T Consensus       270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd  338 (426)
T d1hzua2         270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  338 (426)
T ss_dssp             EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred             eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence            2345678888887654       3667788899999999999999999994       55688999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=8.2e-23  Score=195.60  Aligned_cols=234  Identities=11%  Similarity=0.007  Sum_probs=171.8

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCee--Eee---cCCCC
Q 010470          236 NSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVR--HTL---TGHTD  310 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~---~~~~~  310 (510)
                      +.-++++.+.||+|.|||..+++++..+..+ ..+..++|+|||+++++++.||.|.+||+.+++..  ..+   ..|.+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            3335688899999999999999999999876 46899999999999999999999999999887632  222   34555


Q ss_pred             ceEEEEEecCCCCE-EEEEeCCCcEEEEECCCCeEeeeeeec------------CceeEEEEcCCCCEEE-EecCCCcEE
Q 010470          311 KVCAVDVSKISSRH-VVSAAYDRTLKVWDLHKGYCVNTIIFH------------SNCNALAFSMDGQTIF-SGHIDGNLR  376 (510)
Q Consensus       311 ~v~~i~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~i~~i~~~~~~~~l~-~~~~dg~i~  376 (510)
                      .+.+..|+| ++++ +++++.++.|.+||..+++++..+..+            .....+.++|+|..++ +...++.|.
T Consensus       110 ~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         110 IETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             EEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence            666667777 6665 578888999999999999988776543            2356788999998764 567789999


Q ss_pred             EEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec-CCcEEEEEcCCceeeeEeecCCCeeec-CceeEEEcCCCCE
Q 010470          377 LWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRSLEVCGSLRATGNRVAS-NWSRSCISPDESY  454 (510)
Q Consensus       377 i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~  454 (510)
                      +||..+++.......+....+..+.|+|+|+++++++. ++.+.++|..+++....+......... ......+...+..
T Consensus       189 ~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~  268 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV  268 (432)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred             EEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCce
Confidence            99998877655444444367899999999998777765 468999999988887766543322211 1112233334444


Q ss_pred             EEEEc-CCCeEEEEeCCC
Q 010470          455 VAAGS-ADGSVYIWSISK  471 (510)
Q Consensus       455 l~~~~-~dg~i~iwd~~~  471 (510)
                      .++.. .++.|.+|+...
T Consensus       269 ~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         269 WATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             EEEEBSSSSEEEEEECCT
T ss_pred             ecccccCCceEEeccccc
Confidence            44433 366777776543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=6.8e-22  Score=183.65  Aligned_cols=278  Identities=11%  Similarity=0.051  Sum_probs=203.8

Q ss_pred             HHhhhhcCCceEEecccccccccccCCCccceeecc-ccccceEEEEEecCCCEE-EEeeCCCeEEEEeCCCCcceeccc
Q 010470          187 EKLAKQQVDGVVRRSEEGAEFFAESTVPSTCKHKIN-AHEGGCASILFEYNSARL-ISGGQDKSIKLWDTNTGSLSSTLY  264 (510)
Q Consensus       187 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~  264 (510)
                      +.++.++.++.+.+|+...         .+...++. .|...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+.
T Consensus         9 ~~l~~~~~~~~v~v~D~~t---------~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           9 EYMIVTNYPNNLHVVDVAS---------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             EEEEEEETTTEEEEEETTT---------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEcCCCEEEEEECCC---------CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            3456777888899998654         34556665 456678999999999987 555678999999999998876654


Q ss_pred             cc------ccceeEEEEecCCCEEEEEe------------CCCeEEEEEcCCCCeeEeecCC--CCceEEEEEecCCCCE
Q 010470          265 GC------LGSVLDLAITHDNRSVIAAS------------SSNNLYVWDVNSGRVRHTLTGH--TDKVCAVDVSKISSRH  324 (510)
Q Consensus       265 ~~------~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~  324 (510)
                      ..      ...+..++|+|||+++++++            .++.+.+|+..+++....+..+  ...+..+.+++ ++..
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  158 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSL  158 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-CCEE
Confidence            32      23467899999999998775            3678899998887655444322  23455555655 5555


Q ss_pred             EEEEeCCCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE--------------------------EecCCCcEEEE
Q 010470          325 VVSAAYDRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF--------------------------SGHIDGNLRLW  378 (510)
Q Consensus       325 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~--------------------------~~~~dg~i~i~  378 (510)
                      +++   ++.+.+|++.++..+..+..+..+..+.++|++..++                          ++..++.+.+|
T Consensus       159 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         159 YVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             EEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            444   3568999999999888877665555555666554332                          23334567788


Q ss_pred             ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470          379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG  458 (510)
Q Consensus       379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  458 (510)
                      |..++.........+...+.++.+++++.+++.... +.+.+||+.+++.+..+.....     +..++|+|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~-----~~~va~s~DG~~l~v~  309 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHT-----YYCVAFDKKGDKLYLG  309 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSC-----CCEEEECSSSSCEEEE
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCC-----EEEEEEcCCCCEEEEE
Confidence            888877666555444477888999999888877654 5799999999998887764332     3349999999999999


Q ss_pred             cCCCeEEEEeCCCcceeecccccCc
Q 010470          459 SADGSVYIWSISKADIVRTLKEHTA  483 (510)
Q Consensus       459 ~~dg~i~iwd~~~~~~~~~~~~~~~  483 (510)
                      +.||.|+|||+.+++.+.+++.+.+
T Consensus       310 ~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         310 GTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             SBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             eCCCcEEEEECccCCEEEEEECCCC
Confidence            9999999999999999988875444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=6.8e-20  Score=172.21  Aligned_cols=282  Identities=11%  Similarity=0.022  Sum_probs=200.1

Q ss_pred             ccccccceEEEEEecCCCEEEEe-----eCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC--------
Q 010470          221 INAHEGGCASILFEYNSARLISG-----GQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS--------  287 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------  287 (510)
                      ..+|.+++.+++++|||+.+++.     +..+.|.+||..+++.+..+..+..+  .++|+|||+++++++.        
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            34688999999999999998764     23467999999999999888765543  7999999999998753        


Q ss_pred             --CCeEEEEEcCCCCeeEeecCCCCce-------EEEEEecCCCCEEEEE--eCCCcEEEEECCCCeEeeeeeecCceeE
Q 010470          288 --SNNLYVWDVNSGRVRHTLTGHTDKV-------CAVDVSKISSRHVVSA--AYDRTLKVWDLHKGYCVNTIIFHSNCNA  356 (510)
Q Consensus       288 --d~~i~iwd~~~~~~~~~~~~~~~~v-------~~i~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~i~~  356 (510)
                        ++.|.+||..+++.+..+..+....       ..+.|++ ++..++..  ..++.+.+|+....+.....   ..+.+
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  169 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTC  169 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEEe---cccee
Confidence              5789999999999988887665544       3466777 44443333  34567888888776654433   34567


Q ss_pred             EEEcCCCCEE-EEecCCCcEEEEECCCCceeeeecccc-----cccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeee
Q 010470          357 LAFSMDGQTI-FSGHIDGNLRLWDIQTGKLLSEVAAHS-----LAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCG  430 (510)
Q Consensus       357 i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  430 (510)
                      +.++|+|+.+ ++.+.||.+.+||...+..........     ......+.+++++.+ +..+.++.+.+|+..+.....
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~  248 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEE
Confidence            8899998765 578899999999998887665543221     122344556665544 455678889999988765432


Q ss_pred             EeecC--CCee------ecCceeEEEcCCCCEE----------EEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeC
Q 010470          431 SLRAT--GNRV------ASNWSRSCISPDESYV----------AAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSG  492 (510)
Q Consensus       431 ~~~~~--~~~~------~~~~~~~~~s~~~~~l----------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  492 (510)
                      .....  ....      ......+++++++..+          ++...++.+.+||+.+++.+..+. +...+.+++|+|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp  327 (373)
T d2madh_         249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ  327 (373)
T ss_pred             EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECC
Confidence            22211  1000      0112234556665544          445567789999999999988776 556789999999


Q ss_pred             CCCc--EEEeeCCCeEEEcC
Q 010470          493 LGKP--LASADKNGVVCVWT  510 (510)
Q Consensus       493 ~~~~--l~s~~~dg~i~iwd  510 (510)
                      ||+.  +++++.|+.|++||
T Consensus       328 DG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         328 DGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             CCCEEEEEEeCCCCeEEEEE
Confidence            9984  46789999999997

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.7e-19  Score=166.52  Aligned_cols=271  Identities=14%  Similarity=0.200  Sum_probs=185.8

Q ss_pred             EEEEeeCCCeEEEEeCCCCcceec--ccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEee---cCCCCce
Q 010470          239 RLISGGQDKSIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTL---TGHTDKV  312 (510)
Q Consensus       239 ~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~~~~v  312 (510)
                      .+++++.|++|++|++++...+..  ...|.+.+.+++|+|||++|++++ .|+.|++|++........+   ..+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            457778899999999976543332  336788999999999999997666 5899999999876533322   2344567


Q ss_pred             EEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEeeeee---ecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCCceee
Q 010470          313 CAVDVSKISSRHVVSAAY-DRTLKVWDLHKGYCVNTII---FHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTGKLLS  387 (510)
Q Consensus       313 ~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~  387 (510)
                      ..++|+| +++++++++. ++.|.+|+...........   ....+.++.++|+++++++++ .+..|.+|+........
T Consensus        86 ~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          86 THISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             SEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             eEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            7899999 7887777764 6789999887766544433   234588999999999888765 45579999987654322


Q ss_pred             e-----ecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCce----eeeEeecC--CCeeecCceeEEEcCCCCEE
Q 010470          388 E-----VAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLE----VCGSLRAT--GNRVASNWSRSCISPDESYV  455 (510)
Q Consensus       388 ~-----~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~----~~~~~~~~--~~~~~~~~~~~~~s~~~~~l  455 (510)
                      .     ........+..+.|++++.+++... ..+...+|+.....    ........  ..........++++++++++
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence            1     1222235678999999999887665 45677788765321    11122111  11111223447899999976


Q ss_pred             EE-EcCCCeEEEEeCCCcceeeccc---ccCcCEEEEEEeCCCCcEEEee-CCCeEEEcC
Q 010470          456 AA-GSADGSVYIWSISKADIVRTLK---EHTAPVLSCSWSGLGKPLASAD-KNGVVCVWT  510 (510)
Q Consensus       456 ~~-~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd  510 (510)
                      ++ +..++.+.+|++........+.   .+...+.+++|+|||++|++++ .++.|.+|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            65 4567889999987654433322   2345678899999999877665 568899983

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3e-19  Score=166.47  Aligned_cols=273  Identities=10%  Similarity=0.011  Sum_probs=190.9

Q ss_pred             eEEEEEecCCCEEEEee-----CCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----------CCCeEE
Q 010470          228 CASILFEYNSARLISGG-----QDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SSNNLY  292 (510)
Q Consensus       228 v~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~  292 (510)
                      +.-.+.+|||+.+++..     .++.|.+||..+++.+.++..+..  ..++|+|||++|++++          .++.|.
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            33445689999987653     456799999999999888875543  4799999999888754          478999


Q ss_pred             EEEcCCCCeeEeecCCC-------CceEEEEEecCCCCEEEEEe--CCCcEEEEECCCCeEeeeeeecCc--------ee
Q 010470          293 VWDVNSGRVRHTLTGHT-------DKVCAVDVSKISSRHVVSAA--YDRTLKVWDLHKGYCVNTIIFHSN--------CN  355 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~--------i~  355 (510)
                      +||+.+++....+..+.       .....+.|+| ++..++.++  .+..+.+||..++..+..+..+..        ..
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            99999999887765432       2235678999 677666554  467899999999998887765432        23


Q ss_pred             EEEEcCCCCEEEEe-cCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeE--e
Q 010470          356 ALAFSMDGQTIFSG-HIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGS--L  432 (510)
Q Consensus       356 ~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~  432 (510)
                      .+.+++++..++.. ..++.+.+++.......      ....+....+++++..++.++.++.+++|++..+.....  .
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  234 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE------DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV  234 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCT------TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccce------ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEecc
Confidence            45566666655543 33444555554433221      113344566788888999999999999999987654221  1


Q ss_pred             ecCC------CeeecCceeEEEcCCCCEEEEEcCC----------CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc
Q 010470          433 RATG------NRVASNWSRSCISPDESYVAAGSAD----------GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP  496 (510)
Q Consensus       433 ~~~~------~~~~~~~~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  496 (510)
                      ..+.      .........+++++++..++..+.+          +.|.+||..+++.+..+.. ...+.+++|+|||+.
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~  313 (355)
T d2bbkh_         235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKP  313 (355)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSC
T ss_pred             CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCe
Confidence            1111      1111122347899999988776543          3699999999998888764 455789999999983


Q ss_pred             --EEEeeCCCeEEEcC
Q 010470          497 --LASADKNGVVCVWT  510 (510)
Q Consensus       497 --l~s~~~dg~i~iwd  510 (510)
                        +++++.|+.|.+||
T Consensus       314 ~l~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         314 LLYALSTGDKTLYIHD  329 (355)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCEEEEEE
Confidence              46677899999997

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=1.2e-17  Score=156.63  Aligned_cols=267  Identities=9%  Similarity=-0.041  Sum_probs=190.8

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceecccccccce-------eEEEEec
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGCLGSV-------LDLAITH  277 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v-------~~~~~~~  277 (510)
                      .+...++.++..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+....       ..+.|++
T Consensus        57 g~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~  134 (373)
T d2madh_          57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             CCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEe
Confidence            3455566666544  799999999998875          35789999999999887776554433       4578899


Q ss_pred             CCCEEEEEe--CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC---
Q 010470          278 DNRSVIAAS--SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS---  352 (510)
Q Consensus       278 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---  352 (510)
                      +++.+++..  .++.+.+|+..+.+.....    ....++.++|.....+++.+.|+.+.+||...+..........   
T Consensus       135 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  210 (373)
T d2madh_         135 NNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA  210 (373)
T ss_pred             CCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecccc
Confidence            999776665  4567889998876655433    3456788899666677889999999999999887766654321   


Q ss_pred             ----ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec--ccc---------cccEEEEEEcCCCCEEE-------
Q 010470          353 ----NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA--AHS---------LAAVTSISLSRSGNIIL-------  410 (510)
Q Consensus       353 ----~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~---------~~~i~~i~~~~~~~~l~-------  410 (510)
                          ....+.+.+++.+ +..+.++.+.+|+...+.......  ...         ......+.+++++..++       
T Consensus       211 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  289 (373)
T d2madh_         211 AQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS  289 (373)
T ss_pred             CccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc
Confidence                1344555655544 455567889999987765332211  110         12334456666665544       


Q ss_pred             ---EEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCE--EEEEcCCCeEEEEeCCCcceeecccccCcCE
Q 010470          411 ---TSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESY--VAAGSADGSVYIWSISKADIVRTLKEHTAPV  485 (510)
Q Consensus       411 ---~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  485 (510)
                         +...++.+.+||..+++.+..+......     ..++|+|||+.  +++++.|+.|++||+.+++.+.++..+....
T Consensus       290 ~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~-----~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P  364 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVGQTSSQISLGHDV-----DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGP  364 (373)
T ss_pred             eEEeecCCCeEEEEECCCCcEEEEecCCCCe-----eEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCC
Confidence               4556678999999999988877644332     34899999984  5678899999999999999999999888788


Q ss_pred             EEEEEeCC
Q 010470          486 LSCSWSGL  493 (510)
Q Consensus       486 ~~~~~~~~  493 (510)
                      +.+++.++
T Consensus       365 ~~l~~~~~  372 (373)
T d2madh_         365 QVLSVMNE  372 (373)
T ss_pred             cEEEEecC
Confidence            88887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=3.2e-18  Score=159.34  Aligned_cols=267  Identities=11%  Similarity=0.059  Sum_probs=180.9

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceecccccc-------cceeEEEEecC
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGCL-------GSVLDLAITHD  278 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~  278 (510)
                      +.+.++..+.  +..++|||||++|++.+          .|+.|.+||..+++....+..+.       .....++|+|+
T Consensus        39 ~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  116 (355)
T d2bbkh_          39 RVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD  116 (355)
T ss_dssp             EEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred             cEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecC
Confidence            3445555544  34799999999887643          47899999999998877654322       23456899999


Q ss_pred             CCEEEEEe--CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee------
Q 010470          279 NRSVIAAS--SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF------  350 (510)
Q Consensus       279 ~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------  350 (510)
                      ++++++++  .+..+.+|+..+++....+..+.....   + +......++.+.||...++..........+..      
T Consensus       117 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~  192 (355)
T d2bbkh_         117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI---F-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE  192 (355)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE---E-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred             CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE---e-ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce
Confidence            99988876  456899999999988887765432211   1 11233344444555555554433322222211      


Q ss_pred             -cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeee--ecccc---------cccEEEEEEcCCCCEEEEEecC---
Q 010470          351 -HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSE--VAAHS---------LAAVTSISLSRSGNIILTSGRD---  415 (510)
Q Consensus       351 -~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~---------~~~i~~i~~~~~~~~l~~~~~d---  415 (510)
                       ...+....+.+++..++.++.+|.+++|++..+.....  ...+.         ......+.+++++..++....+   
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~  272 (355)
T d2bbkh_         193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE  272 (355)
T ss_dssp             TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred             ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCc
Confidence             12245567778888899999999999999987654221  11110         0223458899999988776543   


Q ss_pred             -------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC--EEEEEcCCCeEEEEeCCCcceeecccccCcCEE
Q 010470          416 -------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--YVAAGSADGSVYIWSISKADIVRTLKEHTAPVL  486 (510)
Q Consensus       416 -------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  486 (510)
                             +.|.+||..+++.+..+.....     ...++|+|||+  ++++++.|+.|+|||+.+++.+.++.++.....
T Consensus       273 ~~~~~~~~~v~v~d~~t~~~~~~~~~~~~-----~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~  347 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKTGERLAKFEMGHE-----IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ  347 (355)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEEEE-----ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCC
T ss_pred             eeecCCCCeEEEEeCCCCcEEEEecCCCC-----EEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCcc
Confidence                   3699999999998877754322     33489999998  456778899999999999999999987766556


Q ss_pred             EEEEeCC
Q 010470          487 SCSWSGL  493 (510)
Q Consensus       487 ~~~~~~~  493 (510)
                      .+.+.++
T Consensus       348 ~i~~~d~  354 (355)
T d2bbkh_         348 VITTADM  354 (355)
T ss_dssp             EEECCCC
T ss_pred             EEEeCCC
Confidence            6665544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1e-17  Score=154.23  Aligned_cols=276  Identities=11%  Similarity=0.132  Sum_probs=181.3

Q ss_pred             hhhcCCceEEecccccccccccCCCccceeeccccccceEEEEEecCCCEEEEee-CCCeEEEEeCCCCcceeccc---c
Q 010470          190 AKQQVDGVVRRSEEGAEFFAESTVPSTCKHKINAHEGGCASILFEYNSARLISGG-QDKSIKLWDTNTGSLSSTLY---G  265 (510)
Q Consensus       190 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~---~  265 (510)
                      +.++.++.|++|+.....      ..+. .....|.+.|.+++|||||++|++++ .|+.|++|++........+.   .
T Consensus         8 v~~~~~~~I~v~~~~~~~------~l~~-~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEG------ALTL-TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             EEEGGGTEEEEEEECTTS------CEEE-EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EECCCCCcEEEEEEcCCC------CeEE-EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc
Confidence            456778889999744310      0111 22235778999999999999986555 58999999997665433222   3


Q ss_pred             cccceeEEEEecCCCEEEEEeC-CCeEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCC
Q 010470          266 CLGSVLDLAITHDNRSVIAASS-SNNLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHK  341 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~  341 (510)
                      +...+..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.++| +++++++++ .+..|.+|+...
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEecc
Confidence            4456778999999999999885 67899999877654333  345667788999999 666666555 456799999876


Q ss_pred             CeEeeee-------eecCceeEEEEcCCCCEEEEe-cCCCcEEEEECCCCce----eeeecc-----cccccEEEEEEcC
Q 010470          342 GYCVNTI-------IFHSNCNALAFSMDGQTIFSG-HIDGNLRLWDIQTGKL----LSEVAA-----HSLAAVTSISLSR  404 (510)
Q Consensus       342 ~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~----~~~~~~-----~~~~~i~~i~~~~  404 (510)
                      .......       .....+..++|++++..++.. ...+...+|+......    ......     ........+.+++
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  239 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  239 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec
Confidence            5322221       112346889999999887754 4566778887644321    111111     1124567789999


Q ss_pred             CCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeC--CCcce
Q 010470          405 SGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGS-ADGSVYIWSI--SKADI  474 (510)
Q Consensus       405 ~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~  474 (510)
                      +++++++. ..++.+.+|++.............. .......++|+|||++|++++ .++.|.+|++  .+|++
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         240 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             ccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC-CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            99977665 4567899998875433222221110 011223489999999877665 5688999955  45543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.74  E-value=4.1e-17  Score=151.39  Aligned_cols=258  Identities=12%  Similarity=0.062  Sum_probs=181.6

Q ss_pred             EEEeeCCCeEEEEeCCCCcceecccc------------------------------cccceeEEEEecCCCEEEEEe-CC
Q 010470          240 LISGGQDKSIKLWDTNTGSLSSTLYG------------------------------CLGSVLDLAITHDNRSVIAAS-SS  288 (510)
Q Consensus       240 l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~-~d  288 (510)
                      +++|+.+|.|.||++.+++.+.++..                              |........++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67888899999999988876655421                              222334444579999997776 67


Q ss_pred             CeEEEEEcCCCCeeEeec-CCCCceEEEEEecCCCC--EEEEEeCCC-----------------cEEEEECCCCeEeeee
Q 010470          289 NNLYVWDVNSGRVRHTLT-GHTDKVCAVDVSKISSR--HVVSAAYDR-----------------TLKVWDLHKGYCVNTI  348 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~--~l~s~~~dg-----------------~i~iwd~~~~~~~~~~  348 (510)
                      +.|.++|+.+++....+. .+...+..++|+| +++  +++..+.+.                 .+..+|..+......+
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            899999999998877665 3567899999998 454  344433321                 2356899998888888


Q ss_pred             eecCceeEEEEcCCCCEEEEecCC-----------------------------------------CcEEEEECCCCceee
Q 010470          349 IFHSNCNALAFSMDGQTIFSGHID-----------------------------------------GNLRLWDIQTGKLLS  387 (510)
Q Consensus       349 ~~~~~i~~i~~~~~~~~l~~~~~d-----------------------------------------g~i~i~d~~~~~~~~  387 (510)
                      .....+..+.++|+|+++++.+.+                                         +.+.+++....+.+.
T Consensus       173 ~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         173 IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            888889999999999998876543                                         234444444445555


Q ss_pred             eecccccccEEEEEEcCCCCEEEE-EecCCcEEEEEcCCceee--------eEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470          388 EVAAHSLAAVTSISLSRSGNIILT-SGRDNLHNLFDIRSLEVC--------GSLRATGNRVASNWSRSCISPDESYVAAG  458 (510)
Q Consensus       388 ~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  458 (510)
                      .+..+  ..+..+.++|||+++++ +..+++|.+||+.+....        ..+...... ........|+++|..+.+.
T Consensus       253 ~IPvg--ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~-glgplh~~fd~~g~~yts~  329 (441)
T d1qnia2         253 YIPVP--KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPEL-GLGPLHTTFDGRGNAYTTL  329 (441)
T ss_dssp             EECCB--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEE
T ss_pred             EEeCC--CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccc-ccCcccceecCCceEEEcc
Confidence            55554  45678999999998755 667899999998753311        111111111 1122336799999999999


Q ss_pred             cCCCeEEEEeCCCc----------ceeecc-----cccCcCEEEEEEeCCCCcEEEee
Q 010470          459 SADGSVYIWSISKA----------DIVRTL-----KEHTAPVLSCSWSGLGKPLASAD  501 (510)
Q Consensus       459 ~~dg~i~iwd~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~  501 (510)
                      +.|..|..|++...          ..+..+     .+|...+.+.+++|||++|++++
T Consensus       330 ~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         330 FIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            99999999997521          122222     46777777788999999999994

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.8e-16  Score=148.24  Aligned_cols=279  Identities=10%  Similarity=-0.024  Sum_probs=186.2

Q ss_pred             cccceEEEEEecCCCEE--E-EeeCCC--eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe----------CC
Q 010470          224 HEGGCASILFEYNSARL--I-SGGQDK--SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS----------SS  288 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l--~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d  288 (510)
                      +.++...++..++++..  + +...+|  .|.+||..+++.+..+..+..+  .++|+|||+.|++.+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            44555556667788753  2 233344  5777799999998887766554  589999999998865          36


Q ss_pred             CeEEEEEcCCCCeeEeecCCCC-------ceEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEeeeeeecCceeEEEEc
Q 010470          289 NNLYVWDVNSGRVRHTLTGHTD-------KVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGYCVNTIIFHSNCNALAFS  360 (510)
Q Consensus       289 ~~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~  360 (510)
                      +.|.+||..++++...+..+..       ....++|+| ++++++++. .++.+.+||+.+++.+..+..+.....  +.
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~~  172 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--HP  172 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--EE
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--cc
Confidence            7899999999998887754332       234689999 676666554 679999999999999888766543321  11


Q ss_pred             CCCCEEEEecCCCcEEEEECCCCceeeeec-----ccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecC
Q 010470          361 MDGQTIFSGHIDGNLRLWDIQTGKLLSEVA-----AHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRAT  435 (510)
Q Consensus       361 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  435 (510)
                      .....++..+.||.+.+|+...........     ......+....+.+++..+.+.  ++.+.+++.............
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~  250 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAID  250 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCC
T ss_pred             CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecc
Confidence            234566677788888888876543322211     1111344566777777665544  455666666554433222111


Q ss_pred             C--------CeeecCceeEEEcCCCCEEEEEcCC---------CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCc--
Q 010470          436 G--------NRVASNWSRSCISPDESYVAAGSAD---------GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKP--  496 (510)
Q Consensus       436 ~--------~~~~~~~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--  496 (510)
                      .        .........+++++++..+++...+         ..|.+||..+++.+..+.. ...+.+++|+|||+.  
T Consensus       251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~l  329 (368)
T d1mdah_         251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDN  329 (368)
T ss_dssp             SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEE
T ss_pred             cccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEE
Confidence            1        1111223347889998887665322         3599999999999888864 456889999999974  


Q ss_pred             EEEeeCCCeEEEcC
Q 010470          497 LASADKNGVVCVWT  510 (510)
Q Consensus       497 l~s~~~dg~i~iwd  510 (510)
                      ++++..|+.|++||
T Consensus       330 y~s~~~~~~v~v~D  343 (368)
T d1mdah_         330 YANSAGTEVLDIYD  343 (368)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEeCCCCeEEEEE
Confidence            45677889999997

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=7.5e-16  Score=143.91  Aligned_cols=261  Identities=8%  Similarity=-0.030  Sum_probs=178.5

Q ss_pred             cceeeccccccceEEEEEecCCCEEEEee----------CCCeEEEEeCCCCcceecccccc-------cceeEEEEecC
Q 010470          216 TCKHKINAHEGGCASILFEYNSARLISGG----------QDKSIKLWDTNTGSLSSTLYGCL-------GSVLDLAITHD  278 (510)
Q Consensus       216 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~  278 (510)
                      +...++.++..+  .++|+|||+.|++.+          .|+.|.+||..+++.+..+..+.       .....++|+||
T Consensus        57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD  134 (368)
T d1mdah_          57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC
Confidence            445555555544  589999999988754          36789999999998877664332       23356999999


Q ss_pred             CCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee-------
Q 010470          279 NRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-------  350 (510)
Q Consensus       279 ~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------  350 (510)
                      |++++++. .++.+.+||+.+++....+..+....    +.|.....++..+.||.+.+|++..+........       
T Consensus       135 Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~  210 (368)
T d1mdah_         135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc
Confidence            99998886 57899999999999888887655432    2233466778888899999998875543322211       


Q ss_pred             cCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccc-----------ccccEEEEEEcCCCCEEEEEecC----
Q 010470          351 HSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAH-----------SLAAVTSISLSRSGNIILTSGRD----  415 (510)
Q Consensus       351 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~~i~~i~~~~~~~~l~~~~~d----  415 (510)
                      ...+....+.+++..+.+.  ++.+++++...+.........           .......+.++|++..+++...+    
T Consensus       211 ~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~  288 (368)
T d1mdah_         211 NCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS  288 (368)
T ss_dssp             CBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC
T ss_pred             ccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCce
Confidence            1224567777777666544  356677776554433221110           00223457889998877665432    


Q ss_pred             -----CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCC--EEEEEcCCCeEEEEeCCCcceeecccccCcCEEEE
Q 010470          416 -----NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDES--YVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSC  488 (510)
Q Consensus       416 -----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  488 (510)
                           ..|.+||..+++.+..+....     .+..++|+|||+  +++++..++.|++||..+++.+.++..... ...|
T Consensus       289 ~~~~~~~v~v~D~~t~~~~~~~~~~~-----~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l  362 (368)
T d1mdah_         289 CLAAAENTSSVTASVGQTSGPISNGH-----DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESL  362 (368)
T ss_dssp             TTSCEEEEEEEESSSCCEEECCEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEE
T ss_pred             eecCCceEEEEECCCCcEeEEecCCC-----ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEE
Confidence                 258899999998877765432     234489999997  346677889999999999999998875443 3455


Q ss_pred             EE
Q 010470          489 SW  490 (510)
Q Consensus       489 ~~  490 (510)
                      ++
T Consensus       363 ~~  364 (368)
T d1mdah_         363 SV  364 (368)
T ss_dssp             EC
T ss_pred             EE
Confidence            44

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.62  E-value=1.9e-14  Score=139.03  Aligned_cols=109  Identities=10%  Similarity=-0.012  Sum_probs=86.0

Q ss_pred             eccccccceEEEEEecCCCEEEEeeC---------CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCe
Q 010470          220 KINAHEGGCASILFEYNSARLISGGQ---------DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNN  290 (510)
Q Consensus       220 ~~~~h~~~v~~~~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  290 (510)
                      ++..|...|.++.|||||++|+.++.         ++.+.|||+.+++. ..+..+...+..+.|+|||+.++... ++.
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~  133 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NND  133 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEee-ccc
Confidence            56677889999999999999998753         56789999998875 55778899999999999999999864 568


Q ss_pred             EEEEEcCCCCeeEeecCC------------------CCceEEEEEecCCCCEEEEEeCC
Q 010470          291 LYVWDVNSGRVRHTLTGH------------------TDKVCAVDVSKISSRHVVSAAYD  331 (510)
Q Consensus       291 i~iwd~~~~~~~~~~~~~------------------~~~v~~i~~~~~~~~~l~s~~~d  331 (510)
                      +++|+..++........+                  .+....+.|+| ++..|+....|
T Consensus       134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d  191 (470)
T d2bgra1         134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFN  191 (470)
T ss_dssp             EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEE
T ss_pred             ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEec
Confidence            999999888765543221                  22345678999 78888877654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=2.1e-12  Score=113.55  Aligned_cols=236  Identities=9%  Similarity=-0.039  Sum_probs=158.7

Q ss_pred             cceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEee
Q 010470          268 GSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVN  346 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  346 (510)
                      ....+++++++|+.+++.. ..+.+..++............-......+++.+ +++++++....+.+++++..++..+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeee
Confidence            4558999999999777655 456777776554332222222223457788988 77777777777777777666555554


Q ss_pred             eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCc
Q 010470          347 TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSL  426 (510)
Q Consensus       347 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~  426 (510)
                      .......+.++++.++|+++++...+..+..++..... ...+.......+.+++++|+|+++++...++.|..++....
T Consensus        93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS-CEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eeeeeeecccccccccceeEeeccccccccccccccce-eeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence            44444668999999999988887777788888865433 22222222256778999999999888888899999998754


Q ss_pred             eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeE
Q 010470          427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVV  506 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  506 (510)
                      ...........    ....++++++|+++++...++.|..++.............-....+|+++++|.++++-..++.|
T Consensus       172 ~~~~~~~~~~~----~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI  247 (260)
T d1rwia_         172 NQVVLPFTDIT----APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  247 (260)
T ss_dssp             CEEECCCSSCC----SEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             eeeeeeccccC----CCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEE
Confidence            43222111111    22348999999999998889999988865443222222233467899999999888877777777


Q ss_pred             EEc
Q 010470          507 CVW  509 (510)
Q Consensus       507 ~iw  509 (510)
                      +.+
T Consensus       248 ~~i  250 (260)
T d1rwia_         248 VKL  250 (260)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.52  E-value=8.7e-13  Score=127.08  Aligned_cols=138  Identities=16%  Similarity=0.119  Sum_probs=108.2

Q ss_pred             EEEEecCCCEEEEeeCCCeEEEEeCCCCccee-----cccccccceeEEEEecCCCEEEEEeC---------CCeEEEEE
Q 010470          230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSS-----TLYGCLGSVLDLAITHDNRSVIAASS---------SNNLYVWD  295 (510)
Q Consensus       230 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd  295 (510)
                      .+.|.+++.++..  .|+.|.+||+.+++...     .+..|...|.++.|+|||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4678899887765  47789999999997644     34556788999999999999998853         56889999


Q ss_pred             cCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-------------------CceeE
Q 010470          296 VNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-------------------SNCNA  356 (510)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~i~~  356 (510)
                      +.+++ ...+..+...+..+.|+| ++..++... ++.+.+|+..++...+.....                   +....
T Consensus        99 ~~~~~-~~~l~~~~~~~~~~~~SP-DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          99 LNKRQ-LITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             TTTTE-ECCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             CCCCc-ccccccCCcccccccccc-CcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            99876 455778899999999999 788888865 788999999888765543221                   12456


Q ss_pred             EEEcCCCCEEEEecCC
Q 010470          357 LAFSMDGQTIFSGHID  372 (510)
Q Consensus       357 i~~~~~~~~l~~~~~d  372 (510)
                      +.|+|||+.|+....|
T Consensus       176 ~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEECTTSSEEEEEEEE
T ss_pred             cEECCCCCccceeEec
Confidence            8899999999986543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.50  E-value=2.8e-12  Score=118.65  Aligned_cols=221  Identities=14%  Similarity=0.113  Sum_probs=152.2

Q ss_pred             EEEEeCCCeEEEEEcCCCCeeEeecC------------------------------CCCceEEEEEecCCCCEEEE-EeC
Q 010470          282 VIAASSSNNLYVWDVNSGRVRHTLTG------------------------------HTDKVCAVDVSKISSRHVVS-AAY  330 (510)
Q Consensus       282 l~~~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~~v~~i~~~~~~~~~l~s-~~~  330 (510)
                      +++++.+|.|.+|++.+++.+..+.-                              |..........| +++++++ ...
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~   92 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKA   92 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCC
Confidence            45667899999999998887766532                              112233444456 6666654 457


Q ss_pred             CCcEEEEECCCCeEeeeeee--cCceeEEEEcCCCC--EEEEecCCC-----------------cEEEEECCCCceeeee
Q 010470          331 DRTLKVWDLHKGYCVNTIIF--HSNCNALAFSMDGQ--TIFSGHIDG-----------------NLRLWDIQTGKLLSEV  389 (510)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~--~~~i~~i~~~~~~~--~l~~~~~dg-----------------~i~i~d~~~~~~~~~~  389 (510)
                      ++.|.++|+.++++...+..  ...+..++|+|+|+  +++..+.+.                 .+..+|..+.+....+
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            88999999999998887654  45689999999998  444444332                 2356888888887777


Q ss_pred             cccccccEEEEEEcCCCCEEEEEecC-----------------------------------------CcEEEEEcCCcee
Q 010470          390 AAHSLAAVTSISLSRSGNIILTSGRD-----------------------------------------NLHNLFDIRSLEV  428 (510)
Q Consensus       390 ~~~~~~~i~~i~~~~~~~~l~~~~~d-----------------------------------------~~i~i~d~~~~~~  428 (510)
                      ...  ..+..+.++|+|+++++++.+                                         +.+.+++......
T Consensus       173 ~v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v  250 (441)
T d1qnia2         173 IVD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF  250 (441)
T ss_dssp             EES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS
T ss_pred             ecC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCce
Confidence            655  567889999999999887654                                         2333444444444


Q ss_pred             eeEeecCCCeeecCceeEEEcCCCCEEE-EEcCCCeEEEEeCCCcce--------eecccc---cCcCEEEEEEeCCCCc
Q 010470          429 CGSLRATGNRVASNWSRSCISPDESYVA-AGSADGSVYIWSISKADI--------VRTLKE---HTAPVLSCSWSGLGKP  496 (510)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~--------~~~~~~---~~~~v~~~~~~~~~~~  496 (510)
                      +..+.....+.     .+.++|||++++ ++..+++|.|||+.+...        ...+.+   ..-.....+|+++|..
T Consensus       251 ~~~IPvgksPh-----Gv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~  325 (441)
T d1qnia2         251 TRYIPVPKNPH-----GLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA  325 (441)
T ss_dssp             EEEECCBSSCC-----CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred             EEEEeCCCCcc-----CceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence            45554444333     288999999875 567799999999876321        111111   1123466799999988


Q ss_pred             EEEeeCCCeEEEcC
Q 010470          497 LASADKNGVVCVWT  510 (510)
Q Consensus       497 l~s~~~dg~i~iwd  510 (510)
                      +.+...|..|..|+
T Consensus       326 yts~~~ds~v~kw~  339 (441)
T d1qnia2         326 YTTLFIDSQVCKWN  339 (441)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEcccccceEEEec
Confidence            88899999999995

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=1.5e-11  Score=107.90  Aligned_cols=237  Identities=9%  Similarity=0.027  Sum_probs=156.8

Q ss_pred             cceEEEEEecCCCEEEEe-eCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEe
Q 010470          226 GGCASILFEYNSARLISG-GQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHT  304 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  304 (510)
                      -...+++++++|+..++. +..+.+..++............-......+++++++.++++....+.+++++..+......
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            356899999999976654 4557788777654433222222234567899999999777766766777665554444433


Q ss_pred             ecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee-eeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 010470          305 LTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT-IIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTG  383 (510)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  383 (510)
                      .. ......++++.+ +++++++-..+..+..++......... ......+..++++|+|+.+++...++.|..+|....
T Consensus        94 ~~-~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          94 FD-GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CC-SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             ee-eeeecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence            33 235678899988 677777766677788887754332221 122245789999999998888888899999997654


Q ss_pred             ceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCe
Q 010470          384 KLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGS  463 (510)
Q Consensus       384 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~  463 (510)
                      .. ..+.......+..++++++|+++++....+.|..++...... ..+....   ......++++++|+++++-..+++
T Consensus       172 ~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~---~~~P~~i~~d~~g~l~vad~~~~r  246 (260)
T d1rwia_         172 NQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTG---LNTPLAVAVDSDRTVYVADRGNDR  246 (260)
T ss_dssp             CE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCS---CCCEEEEEECTTCCEEEEEGGGTE
T ss_pred             ee-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCC---CCCeEEEEEeCCCCEEEEECCCCE
Confidence            33 333323336788999999999888888888888888654332 1211111   112234899999998888777787


Q ss_pred             EEEEeC
Q 010470          464 VYIWSI  469 (510)
Q Consensus       464 i~iwd~  469 (510)
                      |+.++.
T Consensus       247 I~~i~~  252 (260)
T d1rwia_         247 VVKLTS  252 (260)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            776664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.48  E-value=6e-11  Score=106.79  Aligned_cols=239  Identities=11%  Similarity=0.098  Sum_probs=160.4

Q ss_pred             ceEEEEEecCCCEEEEeeC-------CCeEEEEeCCCCcceecccc----cccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          227 GCASILFEYNSARLISGGQ-------DKSIKLWDTNTGSLSSTLYG----CLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      ...+++|+++|+++++...       +|.|..||..++........    ..+....++|.++++.++++...+.|..++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            4567799999998776433       46799999887765332221    223457899999999888888877888888


Q ss_pred             cCCCCeeEeecCCC----CceEEEEEecCCCCEEEEEeC---------------CCcEEEEECCCCeEeeeeeecCceeE
Q 010470          296 VNSGRVRHTLTGHT----DKVCAVDVSKISSRHVVSAAY---------------DRTLKVWDLHKGYCVNTIIFHSNCNA  356 (510)
Q Consensus       296 ~~~~~~~~~~~~~~----~~v~~i~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~i~~  356 (510)
                      ...+..........    .....+.+.+ ++++.++-..               .|.|..++.. ++.......-...+.
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNG  176 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNG  176 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeee
Confidence            76543222111111    1356788888 6777666422               3456666653 444443333345788


Q ss_pred             EEEcCCCC-----EEEEecCCCcEEEEECCCCceee------eecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCC
Q 010470          357 LAFSMDGQ-----TIFSGHIDGNLRLWDIQTGKLLS------EVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRS  425 (510)
Q Consensus       357 i~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~  425 (510)
                      ++|+|++.     ++++.+..+.|..||+.....+.      .+..........++++++|++.++....+.|.+||...
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence            99998765     45566778899999875432221      22222224577899999999988888889999999988


Q ss_pred             ceeeeEeecCCCeeecCceeEEEcCCCC-EEEEEcCCCeEEEEeCCC
Q 010470          426 LEVCGSLRATGNRVASNWSRSCISPDES-YVAAGSADGSVYIWSISK  471 (510)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~  471 (510)
                      +.....+..+....    +.++|.|+++ ++++.+.+|.|..+++..
T Consensus       257 g~~~~~i~~p~~~~----t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         257 GQPKMRIRCPFEKP----SNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             BSCSEEEECSSSCE----EEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEEECCCCCE----EEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            87766665544333    3489999997 456667789899888754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=1.5e-10  Score=102.50  Aligned_cols=240  Identities=12%  Similarity=0.207  Sum_probs=168.7

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccc------cccceeEEEEecCCCEEEEE-e-CCCeEEEEEcC
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG------CLGSVLDLAITHDNRSVIAA-S-SSNNLYVWDVN  297 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~-~-~d~~i~iwd~~  297 (510)
                      .....++++++|+++++-..++.|++||.+ |+.+..+..      .......+++.++....+.. . .++.|..++. 
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            357899999999988888888999999976 655544421      12234566766665444433 3 4457777774 


Q ss_pred             CCCeeEeec-CCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec---CceeEEEEcCCCCEEEEecCCC
Q 010470          298 SGRVRHTLT-GHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH---SNCNALAFSMDGQTIFSGHIDG  373 (510)
Q Consensus       298 ~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~dg  373 (510)
                      .+.....+. .......++++.+ ++.++++....+.+.+++.. ++.+..+...   ..+..+++.++++.+++....+
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccc
Confidence            466666653 3456678888887 67777777777889999874 5666665433   3478899999999998988899


Q ss_pred             cEEEEECCCCceeeeeccc-ccccEEEEEEcCCCCEEEEEec-CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCC
Q 010470          374 NLRLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGR-DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPD  451 (510)
Q Consensus       374 ~i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  451 (510)
                      .|++||. +++.+..+... ....+..|+++++|+++++.+. ++.|.+|+. +++.+..+......  .....+++.|+
T Consensus       179 ~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~--~~p~~vav~~d  254 (279)
T d1q7fa_         179 CVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKH--AQCFDVALMDD  254 (279)
T ss_dssp             EEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCC--SCEEEEEEETT
T ss_pred             ceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCC--CCEeEEEEeCC
Confidence            9999996 67777776432 2256889999999998887654 457999984 56666666443221  12344889999


Q ss_pred             CCEEEEEcCCCeEEEEeCCCcce
Q 010470          452 ESYVAAGSADGSVYIWSISKADI  474 (510)
Q Consensus       452 ~~~l~~~~~dg~i~iwd~~~~~~  474 (510)
                      |.++++ +.+++|++|......+
T Consensus       255 G~l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         255 GSVVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             TEEEEE-ETTTEEEEEECSCCCC
T ss_pred             CcEEEE-eCCCeEEEEEeeeecC
Confidence            986665 4688999999876543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.45  E-value=1e-10  Score=105.20  Aligned_cols=237  Identities=10%  Similarity=0.104  Sum_probs=155.7

Q ss_pred             ceeEEEEecCCCEEEEEeC-------CCeEEEEEcCCCCeeEeecC----CCCceEEEEEecCCCCEEEEEeCCCcEEEE
Q 010470          269 SVLDLAITHDNRSVIAASS-------SNNLYVWDVNSGRVRHTLTG----HTDKVCAVDVSKISSRHVVSAAYDRTLKVW  337 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~s~~~dg~i~iw  337 (510)
                      ..-.++|.|+|+++++...       +|.|..||..++........    .......+.|.+ +++.++++...+.|..+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence            3466899999997776533       46789999887765443322    123457899988 77777777777789999


Q ss_pred             ECCCCeEeeeeeec-----CceeEEEEcCCCCEEEEecC---------------CCcEEEEECCCCceeeeecccccccE
Q 010470          338 DLHKGYCVNTIIFH-----SNCNALAFSMDGQTIFSGHI---------------DGNLRLWDIQTGKLLSEVAAHSLAAV  397 (510)
Q Consensus       338 d~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~i  397 (510)
                      |...+.........     ..++.+++.++|++.++...               .|.|+.++. .++........  ...
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~--~~p  174 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAF--QFP  174 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEE--SSE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCc--cee
Confidence            98755432211111     13688999999998876432               345666654 34433322221  456


Q ss_pred             EEEEEcCCCC-----EEEEEecCCcEEEEEcCCceeeeE---eecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 010470          398 TSISLSRSGN-----IILTSGRDNLHNLFDIRSLEVCGS---LRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSI  469 (510)
Q Consensus       398 ~~i~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  469 (510)
                      +.++|+|+++     ++++.+..+.|..||+.....+..   +.............+++..+|++.++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            7899998875     445556778899998764322211   11111111111234889999999888888899999998


Q ss_pred             CCcceeecccccCcCEEEEEEeCCCC-cEEEeeCCCeEEEc
Q 010470          470 SKADIVRTLKEHTAPVLSCSWSGLGK-PLASADKNGVVCVW  509 (510)
Q Consensus       470 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iw  509 (510)
                      ..+..+..+..+...+++++|.|+++ ++++.+.+|.|..+
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            88887777766667789999999987 45666677877653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=4.4e-10  Score=99.45  Aligned_cols=233  Identities=13%  Similarity=0.214  Sum_probs=165.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC------CCCceEEEEEecCCCCEEEEE-eCCCcEEEEECCC
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG------HTDKVCAVDVSKISSRHVVSA-AYDRTLKVWDLHK  341 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~l~s~-~~dg~i~iwd~~~  341 (510)
                      ....++++++|+.+++-..++.|++||.+ |+.+..+..      .......+.+.+..+..+++. +.++.|..++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            45789999999988877788899999954 777666632      112345566665444455443 34567878876 4


Q ss_pred             CeEeeeeeec--CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc-cccccEEEEEEcCCCCEEEEEecCCcE
Q 010470          342 GYCVNTIIFH--SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLH  418 (510)
Q Consensus       342 ~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i  418 (510)
                      +.....+...  ..+..+++.++|.++++....+.+.+++. +++.+..+.. ........++++++++++++....+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccce
Confidence            6666555433  34789999999999998888888999985 5666666532 223678899999999999999999999


Q ss_pred             EEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCcceeecccc--cCcCEEEEEEeCCCC
Q 010470          419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA-DGSVYIWSISKADIVRTLKE--HTAPVLSCSWSGLGK  495 (510)
Q Consensus       419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~  495 (510)
                      ++||.. ++.+..+.....  ......++++++|+++++.+. ++.|.+|+ .+|+.+.++..  .......+++.|+|.
T Consensus       181 ~~~d~~-G~~~~~~g~~g~--~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~  256 (279)
T d1q7fa_         181 KVFNYE-GQYLRQIGGEGI--TNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGS  256 (279)
T ss_dssp             EEEETT-CCEEEEESCTTT--SCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred             eeeecC-Cceeeeeccccc--ccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCc
Confidence            999975 455555532211  112345899999998887654 45799998 56877766643  234578999999997


Q ss_pred             cEEEeeCCCeEEEc
Q 010470          496 PLASADKNGVVCVW  509 (510)
Q Consensus       496 ~l~s~~~dg~i~iw  509 (510)
                      ++ +++.++.|++|
T Consensus       257 l~-V~~~n~~v~~f  269 (279)
T d1q7fa_         257 VV-LASKDYRLYIY  269 (279)
T ss_dssp             EE-EEETTTEEEEE
T ss_pred             EE-EEeCCCeEEEE
Confidence            54 45678999987

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.1e-09  Score=96.25  Aligned_cols=234  Identities=15%  Similarity=0.119  Sum_probs=146.3

Q ss_pred             eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCC---eEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCE
Q 010470          248 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSN---NLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRH  324 (510)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  324 (510)
                      .|.|.|.+ |.....+..+...+...+|||||+.|+......   .+.+.+...+.. ..+..+........|+| ++..
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~   96 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP-DGSK   96 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT-TSSE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecC-CCCe
Confidence            57777876 444455555677888999999999999876433   566667665554 34455778888999999 5665


Q ss_pred             EEEEe-CCCc--EEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE-ecCCC--cEEEEECCCCceeeeecccccccEE
Q 010470          325 VVSAA-YDRT--LKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS-GHIDG--NLRLWDIQTGKLLSEVAAHSLAAVT  398 (510)
Q Consensus       325 l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~  398 (510)
                      ++... .++.  +..+.....................+++++..++. ...+|  .|.++++..+.... +.... ....
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~-~~~~  174 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEG-SQNQ  174 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSS-SEEE
T ss_pred             eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eeccc-cccc
Confidence            55444 3333  33333333433333334444555667777765554 44444  46666665554332 22232 6778


Q ss_pred             EEEEcCCCCEEEEEecCC---cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC---CCeEEEEeCCCc
Q 010470          399 SISLSRSGNIILTSGRDN---LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA---DGSVYIWSISKA  472 (510)
Q Consensus       399 ~i~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~  472 (510)
                      ...|+|++..++..+.++   .+.+++...+... .... ...    .....|||||++|+..+.   .+.|+++++..+
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~-~~~----~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS-TFL----DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCC-SSS----CEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             ccccccccceeEEEeecCCceeeeEeecccccce-Eeec-Ccc----ccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            889999999888776554   4445555544432 2222 111    123689999999876553   346899998866


Q ss_pred             ceeecccccCcCEEEEEEeCC
Q 010470          473 DIVRTLKEHTAPVLSCSWSGL  493 (510)
Q Consensus       473 ~~~~~~~~~~~~v~~~~~~~~  493 (510)
                      .. ..+....+.+...+|||-
T Consensus       249 ~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         249 FK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CE-EECCCSSSEEEEEEECCC
T ss_pred             CE-EEEeCCCCcEEeEEeCCC
Confidence            54 445556677888999983

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.35  E-value=5.6e-10  Score=100.03  Aligned_cols=239  Identities=9%  Similarity=-0.017  Sum_probs=159.1

Q ss_pred             ccceeeccccccceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEE
Q 010470          215 STCKHKINAHEGGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVW  294 (510)
Q Consensus       215 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  294 (510)
                      .+.+..+.... .+..++++|||+++++...+++|..|+....  ...+......+.+++|+++|+++++...++.+..|
T Consensus        18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          18 AKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             EEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence            34444443322 5889999999999999999999999986643  23344566788999999999998888888888888


Q ss_pred             EcCCCC--eeEee-cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec-----------CceeEEEEc
Q 010470          295 DVNSGR--VRHTL-TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH-----------SNCNALAFS  360 (510)
Q Consensus       295 d~~~~~--~~~~~-~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~~i~~i~~~  360 (510)
                      +.....  ..... .........+.+.+ +++++++.+.++.+..+|...+.........           ..++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~  173 (302)
T d2p4oa1          95 SLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF  173 (302)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred             EecccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc
Confidence            876433  22111 22445678899988 7888888888899999998877543322211           124566664


Q ss_pred             CCCCEEEEecCCCcEEEEECCCCceeeeecc-cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee
Q 010470          361 MDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA-HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       361 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  439 (510)
                      . +..+++.+..+.|+.++............ .....+..++++++|+++++...++.|..|+.... ..........  
T Consensus       174 ~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~~~~--  249 (302)
T d2p4oa1         174 G-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQAEQG--  249 (302)
T ss_dssp             T-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECGGGT--
T ss_pred             C-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEecCCC--
Confidence            3 34555677888999998865433221110 11145677999999998888888999999987643 2222211111  


Q ss_pred             ecCceeEEE---cCCCCEEEEEcCC
Q 010470          440 ASNWSRSCI---SPDESYVAAGSAD  461 (510)
Q Consensus       440 ~~~~~~~~~---s~~~~~l~~~~~d  461 (510)
                      ....+.++|   ++|++.|++++..
T Consensus       250 ~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         250 VIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCceEEEEcCCCCCCCEEEEECCC
Confidence            112344889   6788887766544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.35  E-value=5.9e-10  Score=99.90  Aligned_cols=227  Identities=11%  Similarity=0.067  Sum_probs=154.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEee
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKG--YCVN  346 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~  346 (510)
                      .+..++++|||+++++...++.|+.|+.. +. ...+......+.+++|.+ +++++++...++.+..|+....  ....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceee
Confidence            57789999999999988899999888854 44 333444667899999999 7888888888888888876432  2222


Q ss_pred             ee--eecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc---------cccccEEEEEEcCCCCEEEEEecC
Q 010470          347 TI--IFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAA---------HSLAAVTSISLSRSGNIILTSGRD  415 (510)
Q Consensus       347 ~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~i~~~~~~~~l~~~~~d  415 (510)
                      ..  .....++.+++.++|+++++.+.++.+..+|...+........         ........+.++. +.++++.+..
T Consensus       106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~  184 (302)
T d2p4oa1         106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEK  184 (302)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTT
T ss_pred             ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCC
Confidence            21  2234488999999999999988899999999877653322211         1113456666654 3455666677


Q ss_pred             CcEEEEEcCCceeeeEee--cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-eeecccccCcCEEEEEE--
Q 010470          416 NLHNLFDIRSLEVCGSLR--ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKAD-IVRTLKEHTAPVLSCSW--  490 (510)
Q Consensus       416 ~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--  490 (510)
                      +.|..++...........  ....    ....++++++|+++++...++.|..|+..... .+......-..+++++|  
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~----~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~  260 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIFVEQT----NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQ  260 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEESC----CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECC
T ss_pred             CeEEeccccccccccccccccCCC----CCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcC
Confidence            888888876533221111  1111    12348999999988888888999999865432 23344444456899999  


Q ss_pred             -eCCCCcEEEeeCC
Q 010470          491 -SGLGKPLASADKN  503 (510)
Q Consensus       491 -~~~~~~l~s~~~d  503 (510)
                       ++|++.|+.++..
T Consensus       261 ~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         261 TEGDCTAIYVVTNG  274 (302)
T ss_dssp             STTTTTEEEEEECT
T ss_pred             CCCCCCEEEEECCC
Confidence             6788877665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.34  E-value=5.6e-09  Score=94.02  Aligned_cols=233  Identities=9%  Similarity=0.042  Sum_probs=155.7

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC----CeEEEEEcCCCCe
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS----NNLYVWDVNSGRV  301 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~  301 (510)
                      ..+..++|+++|+++++....+.|..|+..++.....+.........++++++|+++++...+    +.+...+...+..
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            345789999999988888889999999998776655555556678899999999877766432    3455555554444


Q ss_pred             eEeecC--CCCceEEEEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCC
Q 010470          302 RHTLTG--HTDKVCAVDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHID  372 (510)
Q Consensus       302 ~~~~~~--~~~~v~~i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d  372 (510)
                      ......  -......+.+.+ ++++.++...      .+.+..++...+........-...+.++|+|+++.|+ +-+..
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             eeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccC
Confidence            333322  223467888988 6776665432      2346666665443333333335578999999998664 55677


Q ss_pred             CcEEEEECCCC-ceeee------ecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee--ecCc
Q 010470          373 GNLRLWDIQTG-KLLSE------VAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV--ASNW  443 (510)
Q Consensus       373 g~i~i~d~~~~-~~~~~------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~  443 (510)
                      +.|+.||+... .....      ...........++++++|++.++...++.|.+||. .++.+..+..+....  ....
T Consensus       199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~  277 (319)
T d2dg1a1         199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRS  277 (319)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBC
T ss_pred             CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCcee
Confidence            89999997642 21111      11111145778999999999999889999999996 678777776554321  1123


Q ss_pred             eeEEEcCCCCEEEEEcC
Q 010470          444 SRSCISPDESYVAAGSA  460 (510)
Q Consensus       444 ~~~~~s~~~~~l~~~~~  460 (510)
                      ++++|.+++..+++.+.
T Consensus       278 ~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         278 THPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CEEEECTTSCEEEEEEE
T ss_pred             eeEEEeCCCCEEEEEcC
Confidence            46889888877666543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.33  E-value=1.2e-09  Score=98.53  Aligned_cols=229  Identities=11%  Similarity=0.115  Sum_probs=151.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC----CCcEEEEECCCCeE
Q 010470          269 SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY----DRTLKVWDLHKGYC  344 (510)
Q Consensus       269 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~  344 (510)
                      .+..++|.++|+++++-...+.|+.|+..++.....+.........+++.+ +++++++...    .+.+...+...+..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence            345799999999777777889999999887776666655666788999998 7777766543    23466666655544


Q ss_pred             eeeeee---cCceeEEEEcCCCCEEEEecC------CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEE-EEEec
Q 010470          345 VNTIIF---HSNCNALAFSMDGQTIFSGHI------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNII-LTSGR  414 (510)
Q Consensus       345 ~~~~~~---~~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~  414 (510)
                      ......   ...++.+.+.++|++.++...      .|.+..++... ..+..+...- ...+.++|+|+++.| ++.+.
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~-~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNI-SVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEE-SSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeecc-ceeeeeeeccccceEEEeccc
Confidence            333322   234788999999997776432      23466666543 3333332222 567889999999866 45566


Q ss_pred             CCcEEEEEcCCc-eeeeEee---cCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc------cCcC
Q 010470          415 DNLHNLFDIRSL-EVCGSLR---ATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE------HTAP  484 (510)
Q Consensus       415 d~~i~i~d~~~~-~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~  484 (510)
                      .+.|..|++... .......   ............++++++|++.++...+|.|.+|| ..|+.+..+..      +...
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~  276 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHMLR  276 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSCB
T ss_pred             CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCcCce
Confidence            789999997632 1111110   00000001123489999999988888899999999 46887766642      3445


Q ss_pred             EEEEEEeCCCCcEEEee
Q 010470          485 VLSCSWSGLGKPLASAD  501 (510)
Q Consensus       485 v~~~~~~~~~~~l~s~~  501 (510)
                      +++++|.|++..+++..
T Consensus       277 ~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         277 STHPQFIPGTNQLIICS  293 (319)
T ss_dssp             CCEEEECTTSCEEEEEE
T ss_pred             eeeEEEeCCCCEEEEEc
Confidence            78999999887666554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.30  E-value=2.2e-10  Score=105.64  Aligned_cols=243  Identities=12%  Similarity=0.090  Sum_probs=140.6

Q ss_pred             cccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCC-eeEee-cCCCCceEEEEEecCCCCE--EEEEe-CCCcEEEEECC
Q 010470          266 CLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGR-VRHTL-TGHTDKVCAVDVSKISSRH--VVSAA-YDRTLKVWDLH  340 (510)
Q Consensus       266 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~-~~~~~~v~~i~~~~~~~~~--l~s~~-~dg~i~iwd~~  340 (510)
                      ....+..|+|+|++++|++++. +.+..|.+.... ..... .......+.+.+++ ++..  +++.. ..+.|..+.+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEcc
Confidence            3445677999999999988865 467777776432 22211 11223345566666 4442  22222 23455554432


Q ss_pred             C-------------CeE---eeee--eecCceeEEEEcCCCCEEEEec-CCCcEEEEECCCC-cee--eeec-ccccccE
Q 010470          341 K-------------GYC---VNTI--IFHSNCNALAFSMDGQTIFSGH-IDGNLRLWDIQTG-KLL--SEVA-AHSLAAV  397 (510)
Q Consensus       341 ~-------------~~~---~~~~--~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~--~~~~-~~~~~~i  397 (510)
                      .             +..   ....  .....+.++.|+|+|+++++++ ....|.+|+.... ...  .... ......+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            1             111   1111  1112378999999999888765 3457888876533 222  1111 1223678


Q ss_pred             EEEEEcCCCCEEEEEe-cCCcEEEEEcCCceeeeEee-----cCC----------CeeecCceeEEEcCCCCEEEEEcC-
Q 010470          398 TSISLSRSGNIILTSG-RDNLHNLFDIRSLEVCGSLR-----ATG----------NRVASNWSRSCISPDESYVAAGSA-  460 (510)
Q Consensus       398 ~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~-----~~~----------~~~~~~~~~~~~s~~~~~l~~~~~-  460 (510)
                      ..+.|+|+++++++.. .++.|.+|++..........     ...          .........+.++|||++|+++.. 
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            9999999999886655 57899999987543321111     000          000011234789999999988642 


Q ss_pred             -----CCeEEEEeCCCcceeec------ccccCcCEEEEEEeC-CCCcEEEe-eCCCeEEEcC
Q 010470          461 -----DGSVYIWSISKADIVRT------LKEHTAPVLSCSWSG-LGKPLASA-DKNGVVCVWT  510 (510)
Q Consensus       461 -----dg~i~iwd~~~~~~~~~------~~~~~~~v~~~~~~~-~~~~l~s~-~~dg~i~iwd  510 (510)
                           .+.|..|++.....+..      .........+++++| +|++|+++ ..++.|.+|+
T Consensus       276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence                 23477787765322211      111234457899998 78877665 5678899983

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.3e-08  Score=89.15  Aligned_cols=224  Identities=17%  Similarity=0.153  Sum_probs=137.3

Q ss_pred             ceeeccccccceEEEEEecCCCEEEEeeCCC---eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC-CCeE-
Q 010470          217 CKHKINAHEGGCASILFEYNSARLISGGQDK---SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-SNNL-  291 (510)
Q Consensus       217 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i-  291 (510)
                      ....+..+...+..-+|||||+.||......   .+.+.+...+.. ..+..+.+......|+|+|..++.... ++.. 
T Consensus        30 ~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  108 (269)
T d2hqsa1          30 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN  108 (269)
T ss_dssp             SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccc
Confidence            3444455667788999999999998765433   466666665544 344556778889999999999887763 3333 


Q ss_pred             -EEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE
Q 010470          292 -YVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS  368 (510)
Q Consensus       292 -~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  368 (510)
                       ..+.......... ...........+++.....+++...+|  .|.+.++..+................|+|++..++.
T Consensus       109 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         109 LYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEE
T ss_pred             eeecccccccceee-eeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEE
Confidence             3333232323322 233444455566664444555555555  456666666554444444455778899999998887


Q ss_pred             ecCCC---cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC---CcEEEEEcCCceeeeEeecCCCeeecC
Q 010470          369 GHIDG---NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD---NLHNLFDIRSLEVCGSLRATGNRVASN  442 (510)
Q Consensus       369 ~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~  442 (510)
                      .+.++   .+.++|...+.. . ..... .......|+|||+.|+..+..   ..++++++..+.... +........  
T Consensus       188 ~~~~~~~~~i~~~~~~~~~~-~-~~~~~-~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~g~~~--  261 (269)
T d2hqsa1         188 VSSNGGQQHIAKQDLATGGV-Q-VLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPATDGQVK--  261 (269)
T ss_dssp             EEECSSCEEEEEEETTTCCE-E-ECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCSSSEEE--
T ss_pred             EeecCCceeeeEeecccccc-e-EeecC-ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeCCCCcEE--
Confidence            65443   355556554443 2 22222 556778999999988765543   468889988765533 333333222  


Q ss_pred             ceeEEEcC
Q 010470          443 WSRSCISP  450 (510)
Q Consensus       443 ~~~~~~s~  450 (510)
                        ..+|||
T Consensus       262 --~p~WSP  267 (269)
T d2hqsa1         262 --FPAWSP  267 (269)
T ss_dssp             --EEEECC
T ss_pred             --eEEeCC
Confidence              267877

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.21  E-value=4.5e-09  Score=96.63  Aligned_cols=247  Identities=10%  Similarity=0.085  Sum_probs=145.7

Q ss_pred             cccceEEEEEecCCCEEEEeeCCCeEEEEeCCCC-cceec-ccccccceeEEEEecCCCEEEEEe---CCCeEEEEEcCC
Q 010470          224 HEGGCASILFEYNSARLISGGQDKSIKLWDTNTG-SLSST-LYGCLGSVLDLAITHDNRSVIAAS---SSNNLYVWDVNS  298 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~  298 (510)
                      ....++.|+|+|++++|+++.. +.+..|.+... ..... ..........+.++++++.++...   ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4455778999999999988764 56777776532 22211 112233456778888888544332   245666554422


Q ss_pred             C-Cee------------E---e-ecCCCCceEEEEEecCCCCEEEEEeC-CCcEEEEECCC-CeEe--eeee---ecCce
Q 010470          299 G-RVR------------H---T-LTGHTDKVCAVDVSKISSRHVVSAAY-DRTLKVWDLHK-GYCV--NTII---FHSNC  354 (510)
Q Consensus       299 ~-~~~------------~---~-~~~~~~~v~~i~~~~~~~~~l~s~~~-dg~i~iwd~~~-~~~~--~~~~---~~~~i  354 (510)
                      . ...            .   . -......+.++.|+| +++++++++. ...|.+|+... +...  ....   ....+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            1 110            0   0 011223478999999 7777666653 45788887643 3222  1111   23458


Q ss_pred             eEEEEcCCCCEEEE-ecCCCcEEEEECCCCceeeeecc------------------cccccEEEEEEcCCCCEEEEEecC
Q 010470          355 NALAFSMDGQTIFS-GHIDGNLRLWDIQTGKLLSEVAA------------------HSLAAVTSISLSRSGNIILTSGRD  415 (510)
Q Consensus       355 ~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~------------------~~~~~i~~i~~~~~~~~l~~~~~d  415 (510)
                      ..++|+|+++++++ ...++.|.+|++..+........                  ........+.++|+|++|+++...
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            99999999998865 55678899999866543211110                  111246678999999999887532


Q ss_pred             ------CcEEEEEcCCceeeeEee--cCCCeeecCceeEEEcC-CCCEEEEE-cCCCeEEEEeCCCc
Q 010470          416 ------NLHNLFDIRSLEVCGSLR--ATGNRVASNWSRSCISP-DESYVAAG-SADGSVYIWSISKA  472 (510)
Q Consensus       416 ------~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~s~-~~~~l~~~-~~dg~i~iwd~~~~  472 (510)
                            +.|..|++.....+....  ............++++| +|++|+++ ..++.|.+|++...
T Consensus       276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence                  237777765432221111  11111111223378998 89987666 46789999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.5e-08  Score=94.50  Aligned_cols=269  Identities=13%  Similarity=0.010  Sum_probs=153.6

Q ss_pred             ceEEEEEecCCCEEEEee---------CCCeEEEEeCCCCcceec--ccccccceeEEEEecCCCEEEEEeCCCeEEEEE
Q 010470          227 GCASILFEYNSARLISGG---------QDKSIKLWDTNTGSLSST--LYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD  295 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  295 (510)
                      .+....|||||++++...         ..+.+.+||+.++.....  .......+....|||||+.++... ++.|++.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            567788999999987763         357899999998875332  223345667789999999998876 46788888


Q ss_pred             cCCCCeeEeec-CCCCce-----------------EEEEEecCCCCEEEEEeC-CCc-----------------------
Q 010470          296 VNSGRVRHTLT-GHTDKV-----------------CAVDVSKISSRHVVSAAY-DRT-----------------------  333 (510)
Q Consensus       296 ~~~~~~~~~~~-~~~~~v-----------------~~i~~~~~~~~~l~s~~~-dg~-----------------------  333 (510)
                      ..++..++... +..+.|                 .++-|+| ++..|+.... +..                       
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            87766544332 221212                 4677999 7777776542 222                       


Q ss_pred             ----------EEEEECCCCeEeeeeeec-----C--ceeEEEEcCCCCEEEEecC-C---CcEEEEECCCCceeeeeccc
Q 010470          334 ----------LKVWDLHKGYCVNTIIFH-----S--NCNALAFSMDGQTIFSGHI-D---GNLRLWDIQTGKLLSEVAAH  392 (510)
Q Consensus       334 ----------i~iwd~~~~~~~~~~~~~-----~--~i~~i~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~  392 (510)
                                +.++|+.++.........     .  -+..+.|+|+++.++.... +   ..|.++|..+++....+...
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~  299 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE  299 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence                      344555433222111111     1  1567889999886665332 2   25888999998766555433


Q ss_pred             cccc----EEEEEEcCCCCEEE---EEecCC--cEEEEEcC------CceeeeEeecCCCeeecCceeEEEcCCCCEEE-
Q 010470          393 SLAA----VTSISLSRSGNIIL---TSGRDN--LHNLFDIR------SLEVCGSLRATGNRVASNWSRSCISPDESYVA-  456 (510)
Q Consensus       393 ~~~~----i~~i~~~~~~~~l~---~~~~d~--~i~i~d~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-  456 (510)
                      ..+.    -....|+|+|+.++   ....+|  .+..+++.      .+..+..+....-.+.   ..+.|+.+++.|+ 
T Consensus       300 ~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~---~i~~~d~~~~~vyF  376 (465)
T d1xfda1         300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT---KILAYDEKGNKIYF  376 (465)
T ss_dssp             CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE---EEEEEETTTTEEEE
T ss_pred             CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEE---EEEEEcCCCCEEEE
Confidence            2222    23467899998543   222333  34433322      1121122211111111   1256888877665 


Q ss_pred             EEcCC--Ce--EEEEeCCCcceeecc---cccCcCEEEEEEeCCCCcEEEe
Q 010470          457 AGSAD--GS--VYIWSISKADIVRTL---KEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       457 ~~~~d--g~--i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      ++..+  +.  ++-.++..+.....+   ........++.|||++++++..
T Consensus       377 ~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~  427 (465)
T d1xfda1         377 LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (465)
T ss_dssp             EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             EEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEE
Confidence            44433  22  444444433322222   2244567799999999987743

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.06  E-value=3.2e-07  Score=81.08  Aligned_cols=217  Identities=13%  Similarity=0.066  Sum_probs=143.1

Q ss_pred             EEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee
Q 010470          272 DLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF  350 (510)
Q Consensus       272 ~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  350 (510)
                      +..|++....|+... ..+.|..||..+++.. .+. ....+.++.+.+ ++.++++ +.+ .+.++|..+++.......
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            456887555555444 6789999998887643 332 345678888887 5655554 444 599999998875443322


Q ss_pred             c-----CceeEEEEcCCCCEEEEecC----CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEE-EecCCcEEE
Q 010470          351 H-----SNCNALAFSMDGQTIFSGHI----DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILT-SGRDNLHNL  420 (510)
Q Consensus       351 ~-----~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~i~i  420 (510)
                      .     ..++.+.+.|+|++.++...    .+.-.+|.+..++........  ...+.+.|+++++.++. .+..+.|..
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~--~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI--SIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE--SSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc--CCcceeeecCCCceEEEeecccceeeE
Confidence            2     23789999999997775432    234456666666654444332  56788999999986654 456778988


Q ss_pred             EEcCCc------eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCEEEEEEe-CC
Q 010470          421 FDIRSL------EVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPVLSCSWS-GL  493 (510)
Q Consensus       421 ~d~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~  493 (510)
                      |++...      +..........  ......++++.+|++.++.-..|.|..|| ..++.+..+......+++++|- |+
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~--~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d  251 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGI--KGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPD  251 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTS--SSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTT
T ss_pred             eeecccccccccceEEEeccCcc--cccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCC
Confidence            887421      11111111111  11223488999999888877788999999 5688888887666679999996 66


Q ss_pred             CCcEE
Q 010470          494 GKPLA  498 (510)
Q Consensus       494 ~~~l~  498 (510)
                      .+.|+
T Consensus       252 ~~~Ly  256 (295)
T d2ghsa1         252 ASRLL  256 (295)
T ss_dssp             SCEEE
T ss_pred             CCEEE
Confidence            66554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.05  E-value=5.4e-07  Score=79.53  Aligned_cols=218  Identities=14%  Similarity=0.105  Sum_probs=147.2

Q ss_pred             EEEEecC-CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC-
Q 010470          230 SILFEYN-SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG-  307 (510)
Q Consensus       230 ~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-  307 (510)
                      +..|++. +.+..+--..+.|.-||..++....  ......+.++++.++|.++++ +.+ .+.++|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~--~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTV--HALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--EECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE--EECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            4568874 5555665567899999998886532  223457789999999876665 444 588999998875443321 


Q ss_pred             ---CCCceEEEEEecCCCCEEEEEeC----CCcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEE-EecCCCcEEEEE
Q 010470          308 ---HTDKVCAVDVSKISSRHVVSAAY----DRTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIF-SGHIDGNLRLWD  379 (510)
Q Consensus       308 ---~~~~v~~i~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d  379 (510)
                         ....+..+.+.| ++++.++...    .+.-.+|.+..++...........+.++|+++++.++ +.+..+.|+.|+
T Consensus        98 ~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             cCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence               123578888888 6666555432    2344566666777666555556688999999998655 566778899998


Q ss_pred             CCCC------ce-e-eeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEc-C
Q 010470          380 IQTG------KL-L-SEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCIS-P  450 (510)
Q Consensus       380 ~~~~------~~-~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s-~  450 (510)
                      +...      +. . ..+... .+.+..++++.+|++.++....+.|..||. .++.+..+..+....    ++++|- +
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~-~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~----T~~~FGG~  250 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT----TCPAFIGP  250 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE----EEEEEEST
T ss_pred             ecccccccccceEEEeccCcc-cccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCce----EEEEEeCC
Confidence            7421      11 1 111222 267889999999998888888899999995 577778777665433    347884 6


Q ss_pred             CCCEEEEE
Q 010470          451 DESYVAAG  458 (510)
Q Consensus       451 ~~~~l~~~  458 (510)
                      +.+.|++.
T Consensus       251 d~~~LyvT  258 (295)
T d2ghsa1         251 DASRLLVT  258 (295)
T ss_dssp             TSCEEEEE
T ss_pred             CCCEEEEE
Confidence            76655543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.9e-08  Score=93.97  Aligned_cols=264  Identities=12%  Similarity=0.106  Sum_probs=157.4

Q ss_pred             EEecCCCEEEEeeCCCeEEEEeCCCCcceecccc---cccceeEEEEecCCCEEEEEe---------CCCeEEEEEcCCC
Q 010470          232 LFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYG---CLGSVLDLAITHDNRSVIAAS---------SSNNLYVWDVNSG  299 (510)
Q Consensus       232 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~  299 (510)
                      .|.+++.++.. ..+|.|.+||+.+++....+..   ..-.+....|+||+++++...         ..+.+.+||+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            47777766544 4578899999987765322222   233667888999999988764         3578899999988


Q ss_pred             CeeEee--cCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeecC-------------------ceeEEE
Q 010470          300 RVRHTL--TGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFHS-------------------NCNALA  358 (510)
Q Consensus       300 ~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~i~~i~  358 (510)
                      ......  ......+....|+| +++.++... ++.|.+.+..++..++......                   .-..+.
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             ceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            754332  23344566788999 777777665 6788998887766554432211                   124678


Q ss_pred             EcCCCCEEEEecC-CC---------------------------------cEEEEECCCCceeeeecc-----cccccEEE
Q 010470          359 FSMDGQTIFSGHI-DG---------------------------------NLRLWDIQTGKLLSEVAA-----HSLAAVTS  399 (510)
Q Consensus       359 ~~~~~~~l~~~~~-dg---------------------------------~i~i~d~~~~~~~~~~~~-----~~~~~i~~  399 (510)
                      |+|||++|+.... +.                                 .+.++|+.++........     ....-+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            9999999987532 12                                 244555544332211111     01124678


Q ss_pred             EEEcCCCCEEEEEec-C---CcEEEEEcCCceeeeEeecCCCe-eecCceeEEEcCCCCEEE---EEcCCC--eEEEEeC
Q 010470          400 ISLSRSGNIILTSGR-D---NLHNLFDIRSLEVCGSLRATGNR-VASNWSRSCISPDESYVA---AGSADG--SVYIWSI  469 (510)
Q Consensus       400 i~~~~~~~~l~~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~---~~~~dg--~i~iwd~  469 (510)
                      +.|+|++++++.... +   ..+.++|..+++....+...... +........|+|||+.++   ....+|  .++.+.+
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~  339 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITV  339 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEe
Confidence            899999886665433 2   26888999988776555432221 111112357899998533   222232  3444432


Q ss_pred             C------CcceeecccccCcCEEEE-EEeCCCCcEE
Q 010470          470 S------KADIVRTLKEHTAPVLSC-SWSGLGKPLA  498 (510)
Q Consensus       470 ~------~~~~~~~~~~~~~~v~~~-~~~~~~~~l~  498 (510)
                      .      .+..+..+....-.|..+ +|+++++.|+
T Consensus       340 ~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vy  375 (465)
T d1xfda1         340 SSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY  375 (465)
T ss_dssp             ECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred             ccccccCCCceeEEeccCCceEEEEEEEcCCCCEEE
Confidence            2      233344454444456665 6888777554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.6e-05  Score=68.23  Aligned_cols=239  Identities=6%  Similarity=-0.018  Sum_probs=149.6

Q ss_pred             CeEEEEeCCCCcce-----ecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC
Q 010470          247 KSIKLWDTNTGSLS-----STLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI  320 (510)
Q Consensus       247 g~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  320 (510)
                      +.|+-.+++.....     ..+..+...+.+++|++.++.++.+. .++.|+..++..+.....+......+.++++...
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            46666666543321     12333445677899998888777765 5678998888766555445444467889999875


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEEEec---CCCcEEEEECCCCceeeeeccccccc
Q 010470          321 SSRHVVSAAYDRTLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIFSGH---IDGNLRLWDIQTGKLLSEVAAHSLAA  396 (510)
Q Consensus       321 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~  396 (510)
                      .+++.++-...+.|.+.++........+.. ...+..++++|...+++...   ..+.|...++.... ...+.......
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~~  168 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGL  168 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSC
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeeecccc
Confidence            555556666678999999975543322222 24588999999777666432   22346555664333 23333333367


Q ss_pred             EEEEEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccee
Q 010470          397 VTSISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIV  475 (510)
Q Consensus       397 i~~i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  475 (510)
                      +.++++++.++.|+.+ ...+.|...++........+.....+.     .+++. ++.+.++-...+.|...|..+++..
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~-----~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPF-----AVTSY-GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEE-----EEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcE-----EEEEE-CCEEEEEECCCCEEEEEECCCCccc
Confidence            8899999887777555 466789999997655544444333322     25554 3444555556788999999888776


Q ss_pred             eccc-ccCcCEEEEEEeC
Q 010470          476 RTLK-EHTAPVLSCSWSG  492 (510)
Q Consensus       476 ~~~~-~~~~~v~~~~~~~  492 (510)
                      ..+. .......+++..+
T Consensus       243 ~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         243 DTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEECCSSCCCCCCEEEEC
T ss_pred             eEECCCCCCCcceEEEeC
Confidence            6553 2233444555544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.80  E-value=1.8e-06  Score=77.15  Aligned_cols=226  Identities=12%  Similarity=0.121  Sum_probs=143.6

Q ss_pred             EEEEec---CCCEEEEEe-CCCeEEEEEcCCCCeeEeecC-CCCceEEEEEecC-CCCEEEEEeCC--------------
Q 010470          272 DLAITH---DNRSVIAAS-SSNNLYVWDVNSGRVRHTLTG-HTDKVCAVDVSKI-SSRHVVSAAYD--------------  331 (510)
Q Consensus       272 ~~~~~~---~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~-~~~~l~s~~~d--------------  331 (510)
                      .+.+..   ||+++++.. .++.|.+.|+.+.++...+.. ....+..+...+. +..+++.++.+              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            345543   788888887 678999999999887664432 3345666665432 45566665542              


Q ss_pred             ----CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecCC-----------------------------------
Q 010470          332 ----RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHID-----------------------------------  372 (510)
Q Consensus       332 ----g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----------------------------------  372 (510)
                          +.+.++|..+.+....+........+.++|+|+++++.+.+                                   
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                34678999999999999888888999999999999886533                                   


Q ss_pred             ---CcEEEEECCCC---ceeeeecccccccEEEEEEcCCCCEEEEEe-cCCcEEEEEcCCceee--------eEeecCCC
Q 010470          373 ---GNLRLWDIQTG---KLLSEVAAHSLAAVTSISLSRSGNIILTSG-RDNLHNLFDIRSLEVC--------GSLRATGN  437 (510)
Q Consensus       373 ---g~i~i~d~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~--------~~~~~~~~  437 (510)
                         +.+.+.|.+..   ..+..+...  .....+.++|||+++++++ .+.++.|+|+++....        ..+... .
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVp--KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e-~  325 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-P  325 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC-C
T ss_pred             EEeCCceeecccccCCcceeEEEecC--CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee-c
Confidence               12233343321   122222222  3466789999999987765 5789999999753221        011111 1


Q ss_pred             eeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc----------ceeecccccCcCEEEE------EEeCCCCcEEEee
Q 010470          438 RVASNWSRSCISPDESYVAAGSADGSVYIWSISKA----------DIVRTLKEHTAPVLSC------SWSGLGKPLASAD  501 (510)
Q Consensus       438 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~------~~~~~~~~l~s~~  501 (510)
                      .+.......+|+..|.-..+-.-|..|.-|++...          ..+..+.-|-. +-.+      ...|+|++|++..
T Consensus       326 elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEec
Confidence            11112233678888876667778999999998543          23333333322 1122      2357888888865

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.76  E-value=6.8e-07  Score=78.28  Aligned_cols=230  Identities=14%  Similarity=0.145  Sum_probs=127.5

Q ss_pred             EEecC--CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeC-C-----CeEEEEEcCCCCeeE
Q 010470          232 LFEYN--SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASS-S-----NNLYVWDVNSGRVRH  303 (510)
Q Consensus       232 ~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~  303 (510)
                      ..|||  |+.++..+ +|.|.+.|+.+++. ..+..+.+.+...+|||||+.|+.... +     ..|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  99887765 56799999998775 456667778899999999999987642 2     247777877776543


Q ss_pred             eec------CCCCceEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEeeeeeecCceeEEEEcCCCCEEEEecC
Q 010470          304 TLT------GHTDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFSGHI  371 (510)
Q Consensus       304 ~~~------~~~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  371 (510)
                      ...      ..........|+| +++.++.....      ..+...+...+......  ........+.+.+..++....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  159 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGPATHILFADGRRVIGRNTF  159 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSEEEEETTEEEEEESCS
T ss_pred             eeecCCCccCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCccceeeecCCCeEEEeecc
Confidence            221      1123456788999 67766654322      23455565544432221  122223333333333333222


Q ss_pred             CC-----------cEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC--CcEEEEEcCCceeeeEeecCCCe
Q 010470          372 DG-----------NLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD--NLHNLFDIRSLEVCGSLRATGNR  438 (510)
Q Consensus       372 dg-----------~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~  438 (510)
                      ..           ....+..............  .......++++. .+.....+  ..|.++|+.+............ 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~-  235 (281)
T d1k32a2         160 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS--THVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFTDY-  235 (281)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCS--SCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCCSS-
T ss_pred             ccceeeeeccCCcceeeeeccccceeeccCCc--cccceeeeeccc-cceecccccccceEEEeCCCCceEEeecCCCc-
Confidence            11           1112222222222222222  333444455442 22333333  3577788876654432222111 


Q ss_pred             eecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceee
Q 010470          439 VASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVR  476 (510)
Q Consensus       439 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  476 (510)
                           ....|+|||+.|+... +|.|+++|+.+++...
T Consensus       236 -----~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         236 -----YPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             -----CEEEEEESSSCEEEEE-TTEEEEECTTTCCEEE
T ss_pred             -----ccccCcCCCCEEEEEe-CCEEEEEECCCCCEEE
Confidence                 1246899999988744 6889999998887543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.67  E-value=4.7e-06  Score=72.68  Aligned_cols=221  Identities=13%  Similarity=0.131  Sum_probs=120.5

Q ss_pred             EEecC--CCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC-C-----CcEEEEECCCCeEe
Q 010470          274 AITHD--NRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY-D-----RTLKVWDLHKGYCV  345 (510)
Q Consensus       274 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~~~  345 (510)
                      ..+|+  |+.++..+. |.|++.|+.+++.. .+..+.+.+....|+| +++.|+.... +     ..|.+++..++...
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            46788  998887654 57999999887764 5666778889999999 7777765432 2     24888888888765


Q ss_pred             eeeeec-------CceeEEEEcCCCCEEEEecC------CCcEEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEE
Q 010470          346 NTIIFH-------SNCNALAFSMDGQTIFSGHI------DGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS  412 (510)
Q Consensus       346 ~~~~~~-------~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  412 (510)
                      ......       .......|+|+|+.|+....      ...+...+...+.......    .......+.+.+..++..
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  157 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL----GPATHILFADGRRVIGRN  157 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS----CSCSEEEEETTEEEEEES
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC----CccceeeecCCCeEEEee
Confidence            543222       12567889999998886432      2234555554444322221    122223333333333333


Q ss_pred             ecCC-----------cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC--CCeEEEEeCCCcceeeccc
Q 010470          413 GRDN-----------LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA--DGSVYIWSISKADIVRTLK  479 (510)
Q Consensus       413 ~~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~  479 (510)
                      ....           ....+.................     ....++++.. +.....  ...|+++|+.++.......
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~lt~  231 (281)
T d1k32a2         158 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHV-----SSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLRKHTS  231 (281)
T ss_dssp             CSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCC-----EEEEEETTEE-EEEECTTSSCEEEEEETTSCSCEECCC
T ss_pred             ccccceeeeeccCCcceeeeeccccceeeccCCcccc-----ceeeeecccc-ceecccccccceEEEeCCCCceEEeec
Confidence            2221           1111222222222111111111     1133444432 222222  3458888887665443322


Q ss_pred             ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          480 EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       480 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      .....  ...|+|||+.|+.. .+|.|+++|
T Consensus       232 ~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d  259 (281)
T d1k32a2         232 FTDYY--PRHLNTDGRRILFS-KGGSIYIFN  259 (281)
T ss_dssp             CCSSC--EEEEEESSSCEEEE-ETTEEEEEC
T ss_pred             CCCcc--cccCcCCCCEEEEE-eCCEEEEEE
Confidence            22223  34689999988764 467787765

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=0.00014  Score=62.29  Aligned_cols=211  Identities=9%  Similarity=-0.005  Sum_probs=135.9

Q ss_pred             ccccccceEEEEEecCCCEEEEe-eCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 010470          221 INAHEGGCASILFEYNSARLISG-GQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNS  298 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~  298 (510)
                      +..+...+.+++|++..+.|+-. ..++.|+..+++.+.....+......+.++++..-+..|+.+. ..+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            44455568899999877766554 5568899988876655444444445788999987777776555 567999999876


Q ss_pred             CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEeeeeee-cCceeEEEEcCCCCEEE-EecCCCc
Q 010470          299 GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDR--TLKVWDLHKGYCVNTIIF-HSNCNALAFSMDGQTIF-SGHIDGN  374 (510)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~-~~~~dg~  374 (510)
                      ......+......+..+++.|..+.++.+-...+  .|..-++........... -..+..+++++.++.|+ +....+.
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~  190 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE
Confidence            5544334444467889999995554444533222  355556653332222222 24578999998777665 4456788


Q ss_pred             EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeec
Q 010470          375 LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRA  434 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  434 (510)
                      |...|+........+...  ..+.++++. ++.+.++....+.|...|..+++....+..
T Consensus       191 I~~~~~~g~~~~~v~~~~--~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~  247 (263)
T d1npea_         191 AECLNPAQPGRRKVLEGL--QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (263)
T ss_dssp             EEEEETTEEEEEEEEECC--CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             EEEEECCCCCeEEEECCC--CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECC
Confidence            999998654433333322  345678775 344455555778899999988887766543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.59  E-value=3.2e-05  Score=70.82  Aligned_cols=274  Identities=11%  Similarity=0.059  Sum_probs=148.4

Q ss_pred             eEEEEEecCCCEEEEeeCCC-----------eEEEEeCCCCcceec---ccccccceeEEEEecCCCEEEEEeCC-CeEE
Q 010470          228 CASILFEYNSARLISGGQDK-----------SIKLWDTNTGSLSST---LYGCLGSVLDLAITHDNRSVIAASSS-NNLY  292 (510)
Q Consensus       228 v~~~~~s~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~  292 (510)
                      +.......+|+.++.|+.+.           .+.+||..++.-...   ...+.......++.+++.+++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            34444556888888887531           377999988764322   12233334567888999998888754 5899


Q ss_pred             EEEcCCCCeeEeecCC-CCceEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEeeeeeec--------------
Q 010470          293 VWDVNSGRVRHTLTGH-TDKVCAVDVSKISSRHVVSAAYD------RTLKVWDLHKGYCVNTIIFH--------------  351 (510)
Q Consensus       293 iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~--------------  351 (510)
                      +||..+......-... ...-.+.+..+ ++.+++.|+.+      ..+.+||+.++.....-...              
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             EecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            9999876543221111 11223455555 67888887743      46899999887643211100              


Q ss_pred             -CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccc-------cccEEEEEE-cCCCCEEEEEecCC------
Q 010470          352 -SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHS-------LAAVTSISL-SRSGNIILTSGRDN------  416 (510)
Q Consensus       352 -~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~i~~i~~-~~~~~~l~~~~~d~------  416 (510)
                       .....+...++|..++.+...+.+.++|..+...........       ...-.++.+ ..++++++.|+...      
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~  260 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  260 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcc
Confidence             001123334577778878777788888877654332211100       011122222 34566777776432      


Q ss_pred             --cEEEEEcCCceee--eEeecCCCeeecCceeEEEcCCCCEEEEEcCCC-----------eEEEEeCCCcc--eeeccc
Q 010470          417 --LHNLFDIRSLEVC--GSLRATGNRVASNWSRSCISPDESYVAAGSADG-----------SVYIWSISKAD--IVRTLK  479 (510)
Q Consensus       417 --~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----------~i~iwd~~~~~--~~~~~~  479 (510)
                        ...++++......  ........+...........+||+++++|+.++           ++.+||..+.+  .+..+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~  340 (387)
T d1k3ia3         261 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS  340 (387)
T ss_dssp             CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred             cceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC
Confidence              2333333221110  011111111111223356678999999988531           47889977653  222222


Q ss_pred             ccCcCEEEEEEeCCCCcEEEeeC
Q 010470          480 EHTAPVLSCSWSGLGKPLASADK  502 (510)
Q Consensus       480 ~~~~~v~~~~~~~~~~~l~s~~~  502 (510)
                      .....-......+||+.|+.|+.
T Consensus       341 ~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         341 IVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             SCCCTTEEEEECTTSCEEEEECC
T ss_pred             CcccceEEEEECCCCEEEEEeCC
Confidence            11111123345799999999884

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=0.00014  Score=62.34  Aligned_cols=236  Identities=9%  Similarity=-0.002  Sum_probs=142.5

Q ss_pred             eEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcCCCC----eeEeecCCCCceEEEEEecCCC
Q 010470          248 SIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVNSGR----VRHTLTGHTDKVCAVDVSKISS  322 (510)
Q Consensus       248 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~  322 (510)
                      .|+-.++++...... ......+.++.|++.++.++... ..+.|.-.++....    ....+......+.++++.+..+
T Consensus        11 ~I~~~~l~~~~~~~~-~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SEEEEETTSCCCEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             eEEEEECCCCcceee-eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            588888876554333 33455678899999888877765 56677766665321    2222333345567888887566


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEEe--cCCCcEEEEECCCCceeeeecccccccEEE
Q 010470          323 RHVVSAAYDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFSG--HIDGNLRLWDIQTGKLLSEVAAHSLAAVTS  399 (510)
Q Consensus       323 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~  399 (510)
                      ++.++-...+.|.+.++............ ..+..++++|...+++..  +..+.|...++... ....+.......+.+
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~~~~~p~g  168 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNG  168 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-ceecccccccceeeE
Confidence            66666667789999999766544434333 458899999865555543  23456877777443 333343333367889


Q ss_pred             EEEcCCCCEEEEE-ecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecc
Q 010470          400 ISLSRSGNIILTS-GRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTL  478 (510)
Q Consensus       400 i~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  478 (510)
                      +++++.++.|+.+ ...+.|...++.............. ... ...+++. ++.+.++-..++.|+..+..++.....+
T Consensus       169 l~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~-~~~-p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         169 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR-LAH-PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT-TSS-EEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCc-ccc-cEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            9999987766655 5567899889876443333322211 111 1124444 3344444456788988888877766555


Q ss_pred             cccCcCEEEE
Q 010470          479 KEHTAPVLSC  488 (510)
Q Consensus       479 ~~~~~~v~~~  488 (510)
                      ......+.++
T Consensus       246 ~~~~~~p~~i  255 (266)
T d1ijqa1         246 AENLLSPEDM  255 (266)
T ss_dssp             ECSCSCCCCE
T ss_pred             EcCCCCceEE
Confidence            4433333333

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=0.00013  Score=61.53  Aligned_cols=252  Identities=10%  Similarity=0.091  Sum_probs=159.0

Q ss_pred             CCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEE
Q 010470          246 DKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHV  325 (510)
Q Consensus       246 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  325 (510)
                      ...|.|.|+.+...+..-.-   ..-+.-.+|..+.|+.-+ ..++.+||+++.+.++.+. ...+|.--.|..  .+.|
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis--~~~L  116 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWIS--LNTV  116 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESS--SSEE
T ss_pred             CceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecC--CCEE
Confidence            45799999976553222111   123455678888777666 5689999999998888877 445676677754  5666


Q ss_pred             EEEeCCCcEEEEECCCC-eEeeeeeecC-----ceeEEEEcCCCCEEEEec-------CCCcEEEEECCCCceeeeeccc
Q 010470          326 VSAAYDRTLKVWDLHKG-YCVNTIIFHS-----NCNALAFSMDGQTIFSGH-------IDGNLRLWDIQTGKLLSEVAAH  392 (510)
Q Consensus       326 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~-----~i~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~  392 (510)
                      +..+ +..|+-|++... .+.+.+..+.     .|..-..++++++++..+       -.|.+.+|.... +..+.+.+|
T Consensus       117 ~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGh  194 (327)
T d1utca2         117 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGH  194 (327)
T ss_dssp             EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCS
T ss_pred             EEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccce
Confidence            6555 568999999543 4555555442     367777888999877432       236788998754 344555555


Q ss_pred             ccccEEEEEEcCCC---CEEEEEe---cCCcEEEEEcCCce---ee-----eEeecCCCeeecCceeEEEcCCCCEEEEE
Q 010470          393 SLAAVTSISLSRSG---NIILTSG---RDNLHNLFDIRSLE---VC-----GSLRATGNRVASNWSRSCISPDESYVAAG  458 (510)
Q Consensus       393 ~~~~i~~i~~~~~~---~~l~~~~---~d~~i~i~d~~~~~---~~-----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  458 (510)
                      . +....+.+..+.   ..++.+.   ..+.++|.++....   ..     ..+..+......-...+.+|+.-..++.-
T Consensus       195 a-a~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         195 A-ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             E-EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             e-eeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence            3 333333332111   1232222   23678888886421   10     11111111111122336778888889999


Q ss_pred             cCCCeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470          459 SADGSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVC  507 (510)
Q Consensus       459 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  507 (510)
                      +.-|.|++||+.++.++..-+-...+|...+-+.+..-+++...+|.|.
T Consensus       274 TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         274 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            9999999999999999887776777887666666666677777888764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.52  E-value=3.4e-05  Score=74.35  Aligned_cols=256  Identities=11%  Similarity=0.065  Sum_probs=152.6

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceeccccc----ccceeEEEEecCCCEEEEEe------CCCeEEEEEcCCCCeeEeec
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGC----LGSVLDLAITHDNRSVIAAS------SSNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~  306 (510)
                      +..++.++.||.+.-.|..+|+........    ...++.--.-.++ .++++.      ..|.|+-+|+.+|+.+..+.
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            346778888999999999999876543211    1111211111134 344444      36789999999999888654


Q ss_pred             CCC-------------------------------------Cce-EEEEEecCCCCEEEEEeC----------------CC
Q 010470          307 GHT-------------------------------------DKV-CAVDVSKISSRHVVSAAY----------------DR  332 (510)
Q Consensus       307 ~~~-------------------------------------~~v-~~i~~~~~~~~~l~s~~~----------------dg  332 (510)
                      ...                                     ..+ ...++.+ ....++.+..                ..
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~tg~~~p~~~~~r~g~n~~s~  272 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeecccccCcccccccccccccc
Confidence            221                                     112 1234445 3444444332                35


Q ss_pred             cEEEEECCCCeEeeeeeecC----------ceeEEEEcCCCC---EEEEecCCCcEEEEECCCCceeeeecccc------
Q 010470          333 TLKVWDLHKGYCVNTIIFHS----------NCNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHS------  393 (510)
Q Consensus       333 ~i~iwd~~~~~~~~~~~~~~----------~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------  393 (510)
                      .+...|+++|+.+..+....          ......+..++.   .++.++.+|.++++|..+|+++.......      
T Consensus       273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~  352 (571)
T d2ad6a1         273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccc
Confidence            68888999999888776421          112222223444   45678899999999999998764322110      


Q ss_pred             ------c------------------------c--cEEEEEEcCCCCEEEEEecC--------------------------
Q 010470          394 ------L------------------------A--AVTSISLSRSGNIILTSGRD--------------------------  415 (510)
Q Consensus       394 ------~------------------------~--~i~~i~~~~~~~~l~~~~~d--------------------------  415 (510)
                            .                        +  .-...+++|+...+++...+                          
T Consensus       353 ~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (571)
T d2ad6a1         353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeec
Confidence                  0                        0  00125677776666654332                          


Q ss_pred             -----------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcC
Q 010470          416 -----------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAP  484 (510)
Q Consensus       416 -----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  484 (510)
                                 |.+.-+|+.+++..-...........     .++..+.++++|+.||.++.+|..+|+.+..+......
T Consensus       433 ~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g-----~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~  507 (571)
T d2ad6a1         433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG-----TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB-----CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             cccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcc-----eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence                       35667788888777666544332222     12335668888999999999999999999877542211


Q ss_pred             -EEEEEEeCCCC-cEEE
Q 010470          485 -VLSCSWSGLGK-PLAS  499 (510)
Q Consensus       485 -v~~~~~~~~~~-~l~s  499 (510)
                       -.-+.|..||+ |+++
T Consensus       508 ~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         508 IGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             CSCCEEEEETTEEEEEE
T ss_pred             eecceEEEECCEEEEEE
Confidence             11145555787 4433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.42  E-value=2.3e-05  Score=75.52  Aligned_cols=270  Identities=10%  Similarity=0.073  Sum_probs=157.5

Q ss_pred             CCCEEEEeeCCCeEEEEeC-CCCcceecccccc-----------cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE
Q 010470          236 NSARLISGGQDKSIKLWDT-NTGSLSSTLYGCL-----------GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH  303 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  303 (510)
                      +|..+++.+.++.|...|. ++|+.+.++....           ..-..+++.  +..++.++.||.+.-.|..+|+...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            4444444444678888887 4688776543110           000223443  4568888999999999999999877


Q ss_pred             eecCCC----CceEEEEEecCCCCEEEEEe------CCCcEEEEECCCCeEeeeeeecC---------------------
Q 010470          304 TLTGHT----DKVCAVDVSKISSRHVVSAA------YDRTLKVWDLHKGYCVNTIIFHS---------------------  352 (510)
Q Consensus       304 ~~~~~~----~~v~~i~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~---------------------  352 (510)
                      ......    ..+++.-... + ..++.+.      .+|.|.-+|+.+|+.+..+....                     
T Consensus       140 ~~~~~~~~~~~~~t~~p~v~-~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~  217 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             cccccccccccceeecCeEe-C-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            654211    1111111111 3 3444444      36789999999999988764321                     


Q ss_pred             -----------------c-eeEEEEcCCCCEEEEecC----------------CCcEEEEECCCCceeeeeccccc----
Q 010470          353 -----------------N-CNALAFSMDGQTIFSGHI----------------DGNLRLWDIQTGKLLSEVAAHSL----  394 (510)
Q Consensus       353 -----------------~-i~~i~~~~~~~~l~~~~~----------------dg~i~i~d~~~~~~~~~~~~~~~----  394 (510)
                                       . -...++.+....++.+..                ...+...|+++|+.+..+...+.    
T Consensus       218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd  297 (571)
T d2ad6a1         218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             cccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccc
Confidence                             0 123466666666665443                24577889999998877764321    


Q ss_pred             ----ccEEEEEEcCCCC---EEEEEecCCcEEEEEcCCceeeeEeecCCC------------------------------
Q 010470          395 ----AAVTSISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN------------------------------  437 (510)
Q Consensus       395 ----~~i~~i~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------------------------  437 (510)
                          .......+..++.   .++..+.+|.+.++|..+++.+........                              
T Consensus       298 ~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  377 (571)
T d2ad6a1         298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN  377 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred             cccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceE
Confidence                1222222333443   567788999999999999887643221100                              


Q ss_pred             -----eeecCceeEEEcCCCCEEEEEcCC-------------------------------------CeEEEEeCCCccee
Q 010470          438 -----RVASNWSRSCISPDESYVAAGSAD-------------------------------------GSVYIWSISKADIV  475 (510)
Q Consensus       438 -----~~~~~~~~~~~s~~~~~l~~~~~d-------------------------------------g~i~iwd~~~~~~~  475 (510)
                           .-...+...+++|+...+++...+                                     |.|.-+|+.+++.+
T Consensus       378 ~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~  457 (571)
T d2ad6a1         378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK  457 (571)
T ss_dssp             ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred             EEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCcee
Confidence                 001123346778877766654332                                     45777788888777


Q ss_pred             ecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          476 RTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       476 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ....... +..+=..+..+.++++++.||.++-+|
T Consensus       458 W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~D  491 (571)
T d2ad6a1         458 WTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             EEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             eEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEE
Confidence            6554211 111111122355777889999988765

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.39  E-value=0.0001  Score=71.14  Aligned_cols=271  Identities=11%  Similarity=0.071  Sum_probs=159.5

Q ss_pred             CCCEEEEeeCCCeEEEEeC-CCCcceecccccc-----------cceeEEEEecC----CCEEEEEeCCCeEEEEEcCCC
Q 010470          236 NSARLISGGQDKSIKLWDT-NTGSLSSTLYGCL-----------GSVLDLAITHD----NRSVIAASSSNNLYVWDVNSG  299 (510)
Q Consensus       236 ~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~-----------~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~  299 (510)
                      +|.++++++.++.|...|. .+|+.+..+....           ..-..+++.++    ..+++.++.|+.|.-.|..+|
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            3444445555677777776 5787766543110           01134555443    346889999999999999999


Q ss_pred             CeeEeecCCC----CceEE-EEEecCCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecC----------------
Q 010470          300 RVRHTLTGHT----DKVCA-VDVSKISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHS----------------  352 (510)
Q Consensus       300 ~~~~~~~~~~----~~v~~-i~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~----------------  352 (510)
                      +.+..+....    ..+++ -.+   -++.++.++.      .|.|.-+|+.+|+.+..+....                
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v---~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  218 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             ceeccccccccccccccccCCcE---ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccc
Confidence            9888774221    11111 111   1344555543      4899999999999988764211                


Q ss_pred             -----------------------ceeEEEEcCCCCEEEEecCC----------------CcEEEEECCCCceeeeecccc
Q 010470          353 -----------------------NCNALAFSMDGQTIFSGHID----------------GNLRLWDIQTGKLLSEVAAHS  393 (510)
Q Consensus       353 -----------------------~i~~i~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~  393 (510)
                                             .-..+++.+....++.+..+                ..|.-.|+.+|+....+...+
T Consensus       219 ~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~  298 (596)
T d1w6sa_         219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (596)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccccee
Confidence                                   01244566666666655432                347788999999888765432


Q ss_pred             c--------ccEEEEE-EcCCCC---EEEEEecCCcEEEEEcCCceeeeEeecCCC-------------e----------
Q 010470          394 L--------AAVTSIS-LSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN-------------R----------  438 (510)
Q Consensus       394 ~--------~~i~~i~-~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------------~----------  438 (510)
                      .        ..+..+. ...+|.   .++....+|.+.++|..+++.+........             +          
T Consensus       299 ~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~  378 (596)
T d1w6sa_         299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM  378 (596)
T ss_dssp             TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred             ccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccccccccccccCccccccC
Confidence            1        1222222 223443   677788999999999999887754321110             0          


Q ss_pred             ------------eecCceeEEEcCCCCEEEEEcC---------------------------------------CCeEEEE
Q 010470          439 ------------VASNWSRSCISPDESYVAAGSA---------------------------------------DGSVYIW  467 (510)
Q Consensus       439 ------------~~~~~~~~~~s~~~~~l~~~~~---------------------------------------dg~i~iw  467 (510)
                                  ....+...+++|+..+++....                                       -|.|.-|
T Consensus       379 ~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~  458 (596)
T d1w6sa_         379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY  458 (596)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred             CccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEE
Confidence                        0012334566776666554322                                       1467777


Q ss_pred             eCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          468 SISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       468 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |+.+++.+..... ..++.+-..+..|.+++.|+.||.++-||
T Consensus       459 D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~D  500 (596)
T d1w6sa_         459 NAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARD  500 (596)
T ss_dssp             CTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             eCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEE
Confidence            8888877655432 12222222233566777899999998775

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.37  E-value=6.4e-05  Score=72.22  Aligned_cols=270  Identities=11%  Similarity=0.124  Sum_probs=162.3

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceeccccccc-----------ceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCLG-----------SVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  306 (510)
                      ..|+.++.++.|.-.|..+|+.+.++.....           .-..++.  .+..++.++.++.|.-.|..+|+.+..+.
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            4667777889999999999988766431110           0111222  24568889999999999999999888765


Q ss_pred             CCCCc-eEEEEEec-CCCCEEEEEeC------CCcEEEEECCCCeEeeeeeec---------------------------
Q 010470          307 GHTDK-VCAVDVSK-ISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFH---------------------------  351 (510)
Q Consensus       307 ~~~~~-v~~i~~~~-~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~---------------------------  351 (510)
                      ..... ...+...| .....++.++.      .|.|.-+|.++|+.+..+...                           
T Consensus       145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK  224 (560)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred             ccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccccc
Confidence            32211 00000000 01234444432      367999999999998887521                           


Q ss_pred             ----Cc-eeEEEEcCCCCEEEEecC-------------------CCcEEEEECCCCceeeeeccccc--------ccEEE
Q 010470          352 ----SN-CNALAFSMDGQTIFSGHI-------------------DGNLRLWDIQTGKLLSEVAAHSL--------AAVTS  399 (510)
Q Consensus       352 ----~~-i~~i~~~~~~~~l~~~~~-------------------dg~i~i~d~~~~~~~~~~~~~~~--------~~i~~  399 (510)
                          .. -..+++.+....++.+..                   ...|.-.|+++++....+...+.        ....-
T Consensus       225 ~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l  304 (560)
T d1kv9a2         225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL  304 (560)
T ss_dssp             HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred             ccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeee
Confidence                01 123566676666654332                   23577789999988776653221        11222


Q ss_pred             EEEcCCCC---EEEEEecCCcEEEEEcCCceeeeEeecCCC--------------------------------eeecCce
Q 010470          400 ISLSRSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGN--------------------------------RVASNWS  444 (510)
Q Consensus       400 i~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------------------------------~~~~~~~  444 (510)
                      +.+..++.   .++.++.+|.+.++|..+++.+........                                .-...|.
T Consensus       305 ~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~  384 (560)
T d1kv9a2         305 AELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWH  384 (560)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSS
T ss_pred             eeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccc
Confidence            22233443   677788999999999999988755432110                                0011234


Q ss_pred             eEEEcCCCCEEEEEcC------------------------------------CCeEEEEeCCCcceeecccccCcCEEEE
Q 010470          445 RSCISPDESYVAAGSA------------------------------------DGSVYIWSISKADIVRTLKEHTAPVLSC  488 (510)
Q Consensus       445 ~~~~s~~~~~l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~  488 (510)
                      ..+++|+..++++...                                    .|.|.-||+.+++.+...... .+..+-
T Consensus       385 ~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg  463 (560)
T d1kv9a2         385 SMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGG  463 (560)
T ss_dssp             CCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCC
T ss_pred             cccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC-CCCCCc
Confidence            5677887777665432                                    256788888888887765432 122221


Q ss_pred             EEeCCCCcEEEeeCCCeEEEcC
Q 010470          489 SWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       489 ~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ..+-.|.++++|+.||.++-||
T Consensus       464 ~l~TagglVF~G~~dg~l~A~D  485 (560)
T d1kv9a2         464 TLSTAGNLVFQGTAAGQMHAYS  485 (560)
T ss_dssp             EEEETTTEEEEECTTSEEEEEE
T ss_pred             eeEECCCEEEEECCCCcEEEEE
Confidence            2233456777889999998775

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.37  E-value=0.00023  Score=63.48  Aligned_cols=181  Identities=13%  Similarity=0.141  Sum_probs=117.6

Q ss_pred             CCEEEEEe-CCCcEEEEECCCCeEeeeeee--cCceeEEEEcC--CCCEEEEecCC------------------CcEEEE
Q 010470          322 SRHVVSAA-YDRTLKVWDLHKGYCVNTIIF--HSNCNALAFSM--DGQTIFSGHID------------------GNLRLW  378 (510)
Q Consensus       322 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~--~~~i~~i~~~~--~~~~l~~~~~d------------------g~i~i~  378 (510)
                      +++++... .++.|.+.|+.+.++.+.+..  ...+..+...+  +..+++.++..                  +.+.++
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            55555544 678999999999988765544  34567666644  55577765542                  236788


Q ss_pred             ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCC---------------cEEEE----------------------
Q 010470          379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDN---------------LHNLF----------------------  421 (510)
Q Consensus       379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---------------~i~i~----------------------  421 (510)
                      |..+.+....+...  +....+.++++|+++++.+.+.               .+.++                      
T Consensus       179 D~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         179 DADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             ETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             ecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            99988888777765  4677899999999999887542               23333                      


Q ss_pred             -EcCCc---eeeeEeecCCCeeecCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCcce------------eecccccCcC
Q 010470          422 -DIRSL---EVCGSLRATGNRVASNWSRSCISPDESYVAAGS-ADGSVYIWSISKADI------------VRTLKEHTAP  484 (510)
Q Consensus       422 -d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~------------~~~~~~~~~~  484 (510)
                       |.++.   .....+.....     ...+.++|||+|+++++ .+.++.|+|+..-..            ..... ..-.
T Consensus       257 VD~~~~~~~~v~~yIPVpKs-----PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglg  330 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIANN-----PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLG  330 (459)
T ss_dssp             EECSGG--CSSEEEEEEESS-----CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSC
T ss_pred             ecccccCCcceeEEEecCCC-----CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcC
Confidence             33321   11122222222     23378999999987765 488999999864211            11111 2334


Q ss_pred             EEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          485 VLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       485 v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ....+|+..|....|.--|..|.-|+
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             ccccccCCCceEEEEeeccceEEEEe
Confidence            57789988886566666788888885

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.32  E-value=0.0002  Score=69.11  Aligned_cols=251  Identities=13%  Similarity=0.053  Sum_probs=151.3

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceecccccc----cceeEEEEecCCCEEEEEeC------CCeEEEEEcCCCCeeEeecC
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCL----GSVLDLAITHDNRSVIAASS------SNNLYVWDVNSGRVRHTLTG  307 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~  307 (510)
                      .+++.++.|+.|.-.|..+|+.+..+....    ..++.--.- .+..++++..      .|.|+-+|+.+|+.+..+..
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            468889999999999999998876653211    111111011 1344555543      48999999999999887642


Q ss_pred             CC-------------------------------------Cce-EEEEEecCCCCEEEEEeC----------------CCc
Q 010470          308 HT-------------------------------------DKV-CAVDVSKISSRHVVSAAY----------------DRT  333 (510)
Q Consensus       308 ~~-------------------------------------~~v-~~i~~~~~~~~~l~s~~~----------------dg~  333 (510)
                      ..                                     ..+ ..+++.+ ..++++.+..                ...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg~~~p~~~~~r~g~n~ys~s  279 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeeccccccccccccccccccccccc
Confidence            11                                     111 2334455 4445544432                345


Q ss_pred             EEEEECCCCeEeeeeeecC----------ceeEEEE-cCCCC---EEEEecCCCcEEEEECCCCceeeeeccccc-----
Q 010470          334 LKVWDLHKGYCVNTIIFHS----------NCNALAF-SMDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHSL-----  394 (510)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~----------~i~~i~~-~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----  394 (510)
                      |...|+.+|+.+..+....          .+..+.. ..+|.   .++....+|.++++|..+|+++........     
T Consensus       280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~  359 (596)
T d1w6sa_         280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK  359 (596)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccc
Confidence            8889999999888775421          1222221 23443   577788999999999999987754321100     


Q ss_pred             -------cc--------------------------EEEEEEcCCCCEEEEEecC--------------------------
Q 010470          395 -------AA--------------------------VTSISLSRSGNIILTSGRD--------------------------  415 (510)
Q Consensus       395 -------~~--------------------------i~~i~~~~~~~~l~~~~~d--------------------------  415 (510)
                             .+                          -...+++|+..+++....+                          
T Consensus       360 ~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  439 (596)
T d1w6sa_         360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY  439 (596)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccc
Confidence                   00                          0123566665555443211                          


Q ss_pred             -------------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccc--
Q 010470          416 -------------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKE--  480 (510)
Q Consensus       416 -------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--  480 (510)
                                   |.+.-||+.+++..-...........     .++..|.++++|+.||.++.||..+|+.+..+..  
T Consensus       440 ~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg-----~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~  514 (596)
T d1w6sa_         440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-----TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (596)
T ss_dssp             ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-----CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccc-----eeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence                         45667777777776655433322221     2334577888899999999999999999988754  


Q ss_pred             --cCcCEEEEEEeCCCC-cEE
Q 010470          481 --HTAPVLSCSWSGLGK-PLA  498 (510)
Q Consensus       481 --~~~~v~~~~~~~~~~-~l~  498 (510)
                        +..++   .|..+|+ |++
T Consensus       515 ~~~a~P~---tY~~dGkQYva  532 (596)
T d1w6sa_         515 GAIGYPM---TYTHKGTQYVA  532 (596)
T ss_dssp             CCCSCCE---EEEETTEEEEE
T ss_pred             CcccCCe---EEEECCEEEEE
Confidence              23333   4455777 444

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.30  E-value=0.00023  Score=68.31  Aligned_cols=256  Identities=13%  Similarity=0.142  Sum_probs=153.7

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceeccccccc----ceeEEEEecCCCEEEEEe------CCCeEEEEEcCCCCeeEeec
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLG----SVLDLAITHDNRSVIAAS------SSNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~  306 (510)
                      +..++.+..|+.|.-.|..+|+.+........    .++..-.-.++ .++++.      ..|.|.-+|..+|+.+..+.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeee
Confidence            44678888899999999999988765542211    11110001123 344433      23679999999999888764


Q ss_pred             CC------------------------------CCceE-EEEEecCCCCEEEEEeC-------------------CCcEEE
Q 010470          307 GH------------------------------TDKVC-AVDVSKISSRHVVSAAY-------------------DRTLKV  336 (510)
Q Consensus       307 ~~------------------------------~~~v~-~i~~~~~~~~~l~s~~~-------------------dg~i~i  336 (510)
                      .-                              ...++ .+.+.+ ..++++.+..                   ...|.-
T Consensus       196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivA  274 (560)
T d1kv9a2         196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (560)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             eccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCcccccccccccCCccccceeeEE
Confidence            21                              11121 244455 4444443221                   246778


Q ss_pred             EECCCCeEeeeeeecC-c---------eeEEEEcCCCC---EEEEecCCCcEEEEECCCCceeeeecccccc--------
Q 010470          337 WDLHKGYCVNTIIFHS-N---------CNALAFSMDGQ---TIFSGHIDGNLRLWDIQTGKLLSEVAAHSLA--------  395 (510)
Q Consensus       337 wd~~~~~~~~~~~~~~-~---------i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------  395 (510)
                      .|+++++.+..+.... .         ..-+.+..+|.   .++.++.+|.++++|..+++++.........        
T Consensus       275 ld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~  354 (560)
T d1kv9a2         275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA  354 (560)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred             ecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChh
Confidence            8999998877665321 1         11222223443   5667889999999999999887544321100        


Q ss_pred             ---------------------------cEEEEEEcCCCCEEEEEec----------------------------------
Q 010470          396 ---------------------------AVTSISLSRSGNIILTSGR----------------------------------  414 (510)
Q Consensus       396 ---------------------------~i~~i~~~~~~~~l~~~~~----------------------------------  414 (510)
                                                 .-...+++|+..++++...                                  
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  434 (560)
T d1kv9a2         355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (560)
T ss_dssp             TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             hccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCc
Confidence                                       0113556777666665432                                  


Q ss_pred             --CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCE-EEEEEe
Q 010470          415 --DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV-LSCSWS  491 (510)
Q Consensus       415 --d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~  491 (510)
                        .|.+.-||+.+++..-.+.........     .++-.|.++++|+.||.++.||..+|+.+..++...+.. .-+.|.
T Consensus       435 ~~~G~l~A~D~~tGk~~W~~~~~~~~~gg-----~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~  509 (560)
T d1kv9a2         435 VVSGALLAWDPVKQKAAWKVPYPTHWNGG-----TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE  509 (560)
T ss_dssp             GCEEEEEEEETTTTEEEEEEEESSSCCCC-----EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             ccccceEEEeCCCCeEeeeccCCCCCCCc-----eeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEE
Confidence              245778899998888776654433222     234457788899999999999999999998876422111 113455


Q ss_pred             CCCC-cEEE
Q 010470          492 GLGK-PLAS  499 (510)
Q Consensus       492 ~~~~-~l~s  499 (510)
                      .+|+ +|+.
T Consensus       510 ~dGkqyv~v  518 (560)
T d1kv9a2         510 LAGRQYVAI  518 (560)
T ss_dssp             ETTEEEEEE
T ss_pred             ECCEEEEEE
Confidence            5776 4443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.24  E-value=0.00011  Score=70.82  Aligned_cols=269  Identities=13%  Similarity=0.164  Sum_probs=158.6

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceecccccc----------cce-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeec
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGCL----------GSV-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  306 (510)
                      ..+++++.++.|.-+|..+|+.+..+....          ..+ ..+.+.  +..++.++.|+.+.-.|..+|+.+....
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence            366777788999999999998876643210          011 123332  3457888899999999999999887654


Q ss_pred             CCCC---ceEEEEEec-CCCCEEEEEeC------CCcEEEEECCCCeEeeeeeecC------------------------
Q 010470          307 GHTD---KVCAVDVSK-ISSRHVVSAAY------DRTLKVWDLHKGYCVNTIIFHS------------------------  352 (510)
Q Consensus       307 ~~~~---~v~~i~~~~-~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~------------------------  352 (510)
                      ....   .+. +.-.| .-...+++++.      .|.|..+|..+|+.+..+....                        
T Consensus       156 ~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~  234 (573)
T d1kb0a2         156 TFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (573)
T ss_dssp             TTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             CccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence            3211   111 00000 01344555432      4689999999999888763210                        


Q ss_pred             --------ce-eEEEEcCCCCEEEEecC-------------------CCcEEEEECCCCceeeeecccc--------ccc
Q 010470          353 --------NC-NALAFSMDGQTIFSGHI-------------------DGNLRLWDIQTGKLLSEVAAHS--------LAA  396 (510)
Q Consensus       353 --------~i-~~i~~~~~~~~l~~~~~-------------------dg~i~i~d~~~~~~~~~~~~~~--------~~~  396 (510)
                              .+ ...++.+....++.+..                   ...|.-.|+++++....+...+        ..+
T Consensus       235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~  314 (573)
T d1kb0a2         235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP  314 (573)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence                    01 23556666555554321                   1246777888888776554321        112


Q ss_pred             EEEEEEcCCC---CEEEEEecCCcEEEEEcCCceeeeEeecCCC-------------------------------eeecC
Q 010470          397 VTSISLSRSG---NIILTSGRDNLHNLFDIRSLEVCGSLRATGN-------------------------------RVASN  442 (510)
Q Consensus       397 i~~i~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------------------------------~~~~~  442 (510)
                      ........++   ..++.++.+|.+.++|..+++.+........                               .-...
T Consensus       315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~  394 (573)
T d1kb0a2         315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN  394 (573)
T ss_dssp             CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred             eeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCcc
Confidence            2222233333   3677888999999999999988755432110                               00112


Q ss_pred             ceeEEEcCCCCEEEEEcCC-------------------------------------------CeEEEEeCCCcceeeccc
Q 010470          443 WSRSCISPDESYVAAGSAD-------------------------------------------GSVYIWSISKADIVRTLK  479 (510)
Q Consensus       443 ~~~~~~s~~~~~l~~~~~d-------------------------------------------g~i~iwd~~~~~~~~~~~  479 (510)
                      |...+++|+..++++...+                                           |.|.-||+.+++.+...+
T Consensus       395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~  474 (573)
T d1kb0a2         395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE  474 (573)
T ss_dssp             SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred             ccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeec
Confidence            4445778877766654322                                           356677777777776654


Q ss_pred             ccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          480 EHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       480 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      ... +..+=..+-.|.++++|+.||.++.||
T Consensus       475 ~~~-p~~gg~lstagglVF~G~~dg~l~A~D  504 (573)
T d1kb0a2         475 HVS-PWNGGTLTTAGNVVFQGTADGRLVAYH  504 (573)
T ss_dssp             ESS-SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CCC-CCCCceEEEcCCEEEEECCCCeEEEEE
Confidence            322 111112233566788899999998875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.18  E-value=0.00047  Score=66.25  Aligned_cols=248  Identities=13%  Similarity=0.135  Sum_probs=146.9

Q ss_pred             CEEEEeeCCCeEEEEeCCCCcceeccccc---ccce--eEEEEecCCCEEEEEeC------CCeEEEEEcCCCCeeEeec
Q 010470          238 ARLISGGQDKSIKLWDTNTGSLSSTLYGC---LGSV--LDLAITHDNRSVIAASS------SNNLYVWDVNSGRVRHTLT  306 (510)
Q Consensus       238 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v--~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~  306 (510)
                      ..++.++.|+.+.-.|..+|+.+......   ...+  +..-.- .+..+++++.      .|.|+.+|..+|+.+..+.
T Consensus       129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CcEEEEecccceeeeccccccceecccCccCCcceEEeecceEE-EeccEEEeeccccccccceEEEEecCCccceeeee
Confidence            35677788899998999999886543221   1111  110011 1334555432      4689999999999887763


Q ss_pred             CCC-------------------------------Cce-EEEEEecCCCCEEEEEeC-------------------CCcEE
Q 010470          307 GHT-------------------------------DKV-CAVDVSKISSRHVVSAAY-------------------DRTLK  335 (510)
Q Consensus       307 ~~~-------------------------------~~v-~~i~~~~~~~~~l~s~~~-------------------dg~i~  335 (510)
                      ...                               ..+ ...++.+ ....++.+..                   ...|.
T Consensus       208 t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~-~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svv  286 (573)
T d1kb0a2         208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (573)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             eccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEch-hhCeeeeccCCCccccccccccccccccccceEE
Confidence            211                               111 1234444 3444443221                   23577


Q ss_pred             EEECCCCeEeeeeeec-C---------ceeEEEEcCCC---CEEEEecCCCcEEEEECCCCceeeeeccccc--------
Q 010470          336 VWDLHKGYCVNTIIFH-S---------NCNALAFSMDG---QTIFSGHIDGNLRLWDIQTGKLLSEVAAHSL--------  394 (510)
Q Consensus       336 iwd~~~~~~~~~~~~~-~---------~i~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------  394 (510)
                      ..|+.+++....+... .         .........++   ..++.++.+|.++++|..+|+.+........        
T Consensus       287 Ald~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~  366 (573)
T d1kb0a2         287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (573)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccccccccccccccc
Confidence            7888888877665432 1         12222222333   3567788999999999999987754432110        


Q ss_pred             --------------------------ccEEEEEEcCCCCEEEEEecC---------------------------------
Q 010470          395 --------------------------AAVTSISLSRSGNIILTSGRD---------------------------------  415 (510)
Q Consensus       395 --------------------------~~i~~i~~~~~~~~l~~~~~d---------------------------------  415 (510)
                                                ..-..++++|+..++++...+                                 
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  446 (573)
T d1kb0a2         367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (573)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             ccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccccccc
Confidence                                      001124677776666653322                                 


Q ss_pred             ----------CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeeccccc----
Q 010470          416 ----------NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEH----  481 (510)
Q Consensus       416 ----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----  481 (510)
                                |.+.-||+.+++.+-...........     .++-.|.+|++|+.||.++.||..+|+.+..+...    
T Consensus       447 ~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg-----~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~  521 (573)
T d1kb0a2         447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGG-----TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV  521 (573)
T ss_dssp             CSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCC-----EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             ccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCc-----eEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcc
Confidence                      24666777777777666544322221     23446888889999999999999999999887542    


Q ss_pred             CcCEEEEEEeCCCC
Q 010470          482 TAPVLSCSWSGLGK  495 (510)
Q Consensus       482 ~~~v~~~~~~~~~~  495 (510)
                      ..+   +.|..+|+
T Consensus       522 ~~P---~ty~~~Gk  532 (573)
T d1kb0a2         522 AAP---STYMVDGR  532 (573)
T ss_dssp             SCC---EEEEETTE
T ss_pred             ccC---EEEEECCE
Confidence            223   34555777

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.06  E-value=0.0039  Score=57.35  Aligned_cols=246  Identities=13%  Similarity=0.065  Sum_probs=129.2

Q ss_pred             ccccceEEEEEecCCCEEEEee-CC----CeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCC---------
Q 010470          223 AHEGGCASILFEYNSARLISGG-QD----KSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSS---------  288 (510)
Q Consensus       223 ~h~~~v~~~~~s~~~~~l~s~~-~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  288 (510)
                      ++.-.+..+++||++++++.+- .+    ..|+++|+.+++.+..... ......++|.+|++.|+....+         
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccc
Confidence            3333456678899999987432 22    3699999999987542211 1122568999999988765432         


Q ss_pred             -------CeEEEEEcCCCCe--eEeecCCC--CceEEEEEecCCCCEEEEEe---CCCc--EEEEECCCCe--------E
Q 010470          289 -------NNLYVWDVNSGRV--RHTLTGHT--DKVCAVDVSKISSRHVVSAA---YDRT--LKVWDLHKGY--------C  344 (510)
Q Consensus       289 -------~~i~iwd~~~~~~--~~~~~~~~--~~v~~i~~~~~~~~~l~s~~---~dg~--i~iwd~~~~~--------~  344 (510)
                             ..|..+.+.+...  ...+....  ..+..+..++ ++.+++...   .++.  +.+.|+....        .
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence                   2578888776542  23333332  3456666776 666655332   2333  3444543221        0


Q ss_pred             eeeeeecCceeEEEEcCCCCEEEEec---CCCcEEEEECCCCce--eeeecccccccEEEEEEcCCCCEEEEEe-cCC--
Q 010470          345 VNTIIFHSNCNALAFSMDGQTIFSGH---IDGNLRLWDIQTGKL--LSEVAAHSLAAVTSISLSRSGNIILTSG-RDN--  416 (510)
Q Consensus       345 ~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~--  416 (510)
                      ...+...........+.++.+++...   .++.|...++.....  ...+-.++...+..-.+...+.+|+... .++  
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~  359 (430)
T d1qfma1         280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (430)
T ss_dssp             EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             eEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence            11111111111222222333333322   346677777765432  1233333223444444444556666554 444  


Q ss_pred             cEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEE--cC--CCeEEEEeCCCcce
Q 010470          417 LHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAG--SA--DGSVYIWSISKADI  474 (510)
Q Consensus       417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~--~~--dg~i~iwd~~~~~~  474 (510)
                      .|.++++.++.....+......+.    .+...++...+...  |.  -.+++-||+.+++.
T Consensus       360 ~l~v~~~~~~~~~~~~~~~~~sv~----~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         360 TLQLHDLATGALLKIFPLEVGSVV----GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEEETTTCCEEEEECCCSSEEE----EEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEEEECCCCcEEEecCCCCceEe----eccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            688899988776555433333222    23334555443332  21  36789999988754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=0.003  Score=53.71  Aligned_cols=208  Identities=10%  Similarity=-0.007  Sum_probs=128.6

Q ss_pred             cccceEEEEEecCCCEEEEe-eCCCeEEEEeCCCCcc----eecccccccceeEEEEecCCCEEEEEe-CCCeEEEEEcC
Q 010470          224 HEGGCASILFEYNSARLISG-GQDKSIKLWDTNTGSL----SSTLYGCLGSVLDLAITHDNRSVIAAS-SSNNLYVWDVN  297 (510)
Q Consensus       224 h~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~  297 (510)
                      ....+.+++|++.++.|+-. ..++.|.-.+++....    ...+......+.++++.+.+..|+.+. ..+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            44567899999877766554 4567777777653221    112223345677899988777776665 56789999988


Q ss_pred             CCCeeEeecCCCCceEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEeeeeeec-CceeEEEEcCCCCEEEE-ecCCCc
Q 010470          298 SGRVRHTLTGHTDKVCAVDVSKISSRHVVSAA-YDRTLKVWDLHKGYCVNTIIFH-SNCNALAFSMDGQTIFS-GHIDGN  374 (510)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~-~~~dg~  374 (510)
                      .......+........++++.|..+.++++.. ..+.|.-.++............ ..++.+++++.+..|+. ....+.
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            66655556656677899999985454444432 3456777777544333322222 45789999987776654 466789


Q ss_pred             EEEEECCCCceeeeeccc-ccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEe
Q 010470          375 LRLWDIQTGKLLSEVAAH-SLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSL  432 (510)
Q Consensus       375 i~i~d~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  432 (510)
                      |...|+............ ....+.++++. .+.++++...++.|...+..++.....+
T Consensus       188 I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            999998654333222222 12346677776 3444445456678888887766554444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.00  E-value=0.0035  Score=60.09  Aligned_cols=271  Identities=15%  Similarity=0.123  Sum_probs=155.5

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccc--------cce-eEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecC
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCL--------GSV-LDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTG  307 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  307 (510)
                      +..|++++.++.|.-.|..+|+.+.++....        ..+ ..+++.  +..++.++.++.+...|..+|+.+.....
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeecc
Confidence            3477778888999999999998876653110        111 123332  45688899999999999999987755431


Q ss_pred             --CC-C----ceEEEEEecCCCCEEEEE-------eCCCcEEEEECCCCeEeeeeeecC---------------------
Q 010470          308 --HT-D----KVCAVDVSKISSRHVVSA-------AYDRTLKVWDLHKGYCVNTIIFHS---------------------  352 (510)
Q Consensus       308 --~~-~----~v~~i~~~~~~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~~~---------------------  352 (510)
                        +. .    ....+.-.......++..       +..+.|.-+|..+|+.+..+....                     
T Consensus       146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~  225 (582)
T d1flga_         146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence              10 0    000111111112333322       235679999999998877653211                     


Q ss_pred             --------------------c-eeEEEEcCCCCEEEEecC------------------------CCcEEEEECCCCceee
Q 010470          353 --------------------N-CNALAFSMDGQTIFSGHI------------------------DGNLRLWDIQTGKLLS  387 (510)
Q Consensus       353 --------------------~-i~~i~~~~~~~~l~~~~~------------------------dg~i~i~d~~~~~~~~  387 (510)
                                          . -..+++.+...+++.+..                        ...|.-.|+.+++...
T Consensus       226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W  305 (582)
T d1flga_         226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence                                0 123566676666665431                        1246777888998877


Q ss_pred             eeccccc--------ccEEEEEEc-CCCC---EEEEEecCCcEEEEEcCCceeeeEeecCCCe-----------------
Q 010470          388 EVAAHSL--------AAVTSISLS-RSGN---IILTSGRDNLHNLFDIRSLEVCGSLRATGNR-----------------  438 (510)
Q Consensus       388 ~~~~~~~--------~~i~~i~~~-~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------------  438 (510)
                      .+...+.        ....-+.+. .++.   .++..+.++.++++|..+++.+.........                 
T Consensus       306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~  385 (582)
T d1flga_         306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE  385 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred             cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccccceecc
Confidence            6654221        111122221 2332   4666778888999998888765432211100                 


Q ss_pred             ------------------------eecCceeEEEcCCCCEEEEEcC---------------------------------C
Q 010470          439 ------------------------VASNWSRSCISPDESYVAAGSA---------------------------------D  461 (510)
Q Consensus       439 ------------------------~~~~~~~~~~s~~~~~l~~~~~---------------------------------d  461 (510)
                                              ....+...+++|+...+++...                                 .
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  465 (582)
T d1flga_         386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV  465 (582)
T ss_dssp             TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred             ccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCccccccccCCC
Confidence                                    0112334566666554443322                                 2


Q ss_pred             CeEEEEeCCCcceeecccccCcCEEEEEEeCCCCcEEEeeCCCeEEEcC
Q 010470          462 GSVYIWSISKADIVRTLKEHTAPVLSCSWSGLGKPLASADKNGVVCVWT  510 (510)
Q Consensus       462 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  510 (510)
                      |.|.-+|+.+|+.+.....+. ++.+-..+..|.++++|+.||.++-||
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~D  513 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEE
Confidence            568888888888877765432 222222334566788899999998775

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.00  E-value=0.0027  Score=60.97  Aligned_cols=256  Identities=13%  Similarity=0.120  Sum_probs=146.7

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceeccc--cccc----ceeEEEEec--CCCEEEEEe-------CCCeEEEEEcCCCCe
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLY--GCLG----SVLDLAITH--DNRSVIAAS-------SSNNLYVWDVNSGRV  301 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~----~v~~~~~~~--~~~~l~~~~-------~d~~i~iwd~~~~~~  301 (510)
                      +..++.++.|+.+.-.|..+|+.+....  .+..    .-....+.+  .+..++..+       ..+.|.-+|..+|+.
T Consensus       117 ~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~  196 (582)
T d1flga_         117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcE
Confidence            3567778889999999999988754321  1110    000011111  123333332       346788899999988


Q ss_pred             eEeecCCCC----------------------------------------ce-EEEEEecCCCCEEEEEe-----------
Q 010470          302 RHTLTGHTD----------------------------------------KV-CAVDVSKISSRHVVSAA-----------  329 (510)
Q Consensus       302 ~~~~~~~~~----------------------------------------~v-~~i~~~~~~~~~l~s~~-----------  329 (510)
                      +..+.....                                        .+ ..+++.+ ..++++.+.           
T Consensus       197 ~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~~~vy~~tgn~~p~~~~~~  275 (582)
T d1flga_         197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGG
T ss_pred             EEEEeccCCccccccccccccccccccccCCCccccccCCccceecCCCcccccceecc-ccceEEeccCCccccccccc
Confidence            776532211                                        11 2245555 445555432           


Q ss_pred             -------------CCCcEEEEECCCCeEeeeeeecC-c---------eeEEEEc-CCCC---EEEEecCCCcEEEEECCC
Q 010470          330 -------------YDRTLKVWDLHKGYCVNTIIFHS-N---------CNALAFS-MDGQ---TIFSGHIDGNLRLWDIQT  382 (510)
Q Consensus       330 -------------~dg~i~iwd~~~~~~~~~~~~~~-~---------i~~i~~~-~~~~---~l~~~~~dg~i~i~d~~~  382 (510)
                                   ....|.-.|+.+|+....+.... .         ..-+.+. .++.   .++.++.+|.++++|..+
T Consensus       276 ~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~t  355 (582)
T d1flga_         276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCCcCcccccccceeEEecccchhhhhcccccccccccccccccccccccccccccccceeEeecccccEEeecccC
Confidence                         12357788999998887775421 1         1122221 1332   456678899999999988


Q ss_pred             Cceeeeecccc--------------------------------------------cccEEEEEEcCCCCEEEEEec----
Q 010470          383 GKLLSEVAAHS--------------------------------------------LAAVTSISLSRSGNIILTSGR----  414 (510)
Q Consensus       383 ~~~~~~~~~~~--------------------------------------------~~~i~~i~~~~~~~~l~~~~~----  414 (510)
                      ++.+.......                                            ...-...+++|+...+++...    
T Consensus       356 G~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~  435 (582)
T d1flga_         356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CcccccccccCccccccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeecccccc
Confidence            87654321110                                            001112345555554443322    


Q ss_pred             -----------------------------CCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEE
Q 010470          415 -----------------------------DNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVY  465 (510)
Q Consensus       415 -----------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  465 (510)
                                                   .|.+.-+|+.+++..-...........     .++..|.++++|+.||.++
T Consensus       436 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p~~~g-----~lstagglVF~Gt~dg~l~  510 (582)
T d1flga_         436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAG-----VLATAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSC-----CEEETTTEEEEECTTSEEE
T ss_pred             ccccccccccccccccccCccccccccCCCCeEEEEcCCCCcEEeecCCCCCCccc-----eeEEcCCeEEEeCCCCeEE
Confidence                                         246777888888887776654333221     2345677888999999999


Q ss_pred             EEeCCCcceeecccccCcCE-EEEEEeCCCC-cEE
Q 010470          466 IWSISKADIVRTLKEHTAPV-LSCSWSGLGK-PLA  498 (510)
Q Consensus       466 iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~l~  498 (510)
                      .||..+|+.+..++...... .-+.|..+|+ |++
T Consensus       511 A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            99999999998876422111 1145667886 443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.89  E-value=0.00068  Score=61.61  Aligned_cols=232  Identities=14%  Similarity=0.077  Sum_probs=123.9

Q ss_pred             ceEEEEEecCCCEEEEeeCC-CeEEEEeCCCCcceeccc-ccccceeEEEEecCCCEEEEEeCC------CeEEEEEcCC
Q 010470          227 GCASILFEYNSARLISGGQD-KSIKLWDTNTGSLSSTLY-GCLGSVLDLAITHDNRSVIAASSS------NNLYVWDVNS  298 (510)
Q Consensus       227 ~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~  298 (510)
                      ...+.++.++|.+++.|+.+ ..+.+||..+..-...-. .....-...+..+||++++.++.+      ..+.+||..+
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            34566788999999998765 589999987765432211 111223456777899998888743      3689999887


Q ss_pred             CCeeEeec---------CCCCc----eEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeee--cC-------ceeE
Q 010470          299 GRVRHTLT---------GHTDK----VCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIF--HS-------NCNA  356 (510)
Q Consensus       299 ~~~~~~~~---------~~~~~----v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~-------~i~~  356 (510)
                      .+-...-.         .+...    -....+...++..++.++..+.+.++|..+.........  ..       .-.+
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  236 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence            65321100         00000    011111112566677777777788888776654332211  10       0122


Q ss_pred             EEE-cCCCCEEEEecCCC--------cEEEEECCCC---ceeeeecc--cccccEEEEEEcCCCCEEEEEecC-------
Q 010470          357 LAF-SMDGQTIFSGHIDG--------NLRLWDIQTG---KLLSEVAA--HSLAAVTSISLSRSGNIILTSGRD-------  415 (510)
Q Consensus       357 i~~-~~~~~~l~~~~~dg--------~i~i~d~~~~---~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d-------  415 (510)
                      +.+ ..+++.++.|+...        ...++++...   ........  .....-.+....++|+++++|+.+       
T Consensus       237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~  316 (387)
T d1k3ia3         237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  316 (387)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             EEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCC
Confidence            222 23667777765321        2333333221   11111111  111223345666899999988843       


Q ss_pred             ----CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC
Q 010470          416 ----NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA  460 (510)
Q Consensus       416 ----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  460 (510)
                          ..+.+||..+.+-...-......  ..-+...+.+||+.++.|+.
T Consensus       317 ~~~~~~ve~Ydp~~~~W~~~~~~~~~R--~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         317 STPVFTPEIYVPEQDTFYKQNPNSIVR--VYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CSBCCCCEEEEGGGTEEEECCCCSSCC--CTTEEEEECTTSCEEEEECC
T ss_pred             CcEeceEEEEECCCCeEEECCCCCCcc--cceEEEEECCCCEEEEEeCC
Confidence                14788998765432221111111  11122456899999999884

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=0.03  Score=46.95  Aligned_cols=205  Identities=11%  Similarity=0.171  Sum_probs=125.8

Q ss_pred             EEEEecCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCC-CeeEeecCC
Q 010470          230 SILFEYNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSG-RVRHTLTGH  308 (510)
Q Consensus       230 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~  308 (510)
                      +.-.+|..+.||.-+ ..++.|||+++...++.+.- ..+|.--.|-.+. .|+..+ +..|+-|+++.. .+.+.+.-|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            344578888877766 56899999999988777654 4466667776444 344443 357999999542 466666544


Q ss_pred             C----CceEEEEEecCCCCEEEEEe-------CCCcEEEEECCCCeEeeeeeecCc-eeEEEEc--CCCC-EEEE---ec
Q 010470          309 T----DKVCAVDVSKISSRHVVSAA-------YDRTLKVWDLHKGYCVNTIIFHSN-CNALAFS--MDGQ-TIFS---GH  370 (510)
Q Consensus       309 ~----~~v~~i~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~-i~~i~~~--~~~~-~l~~---~~  370 (510)
                      .    ..|.....++ +.+.++..|       -.|.+.+|..+.+. -+.+.+|.. ...+.+.  +... .++.   +.
T Consensus       143 ~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~  220 (327)
T d1utca2         143 SSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ  220 (327)
T ss_dssp             GGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEET
T ss_pred             ccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCC
Confidence            3    4566666666 555554332       14778899987543 233333321 1111111  0111 2221   23


Q ss_pred             CCCcEEEEECCCCc---e-----eeeecc---cccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCCCee
Q 010470          371 IDGNLRLWDIQTGK---L-----LSEVAA---HSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRV  439 (510)
Q Consensus       371 ~dg~i~i~d~~~~~---~-----~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  439 (510)
                      ..+.+++.++....   .     ...+..   ....-+.++.+++....++.-+.-|.+++||+.++..+..-+.....+
T Consensus       221 ~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~i  300 (327)
T d1utca2         221 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI  300 (327)
T ss_dssp             TEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCce
Confidence            34688998886521   1     111111   112567789999999999999999999999999999877766555544


Q ss_pred             e
Q 010470          440 A  440 (510)
Q Consensus       440 ~  440 (510)
                      .
T Consensus       301 F  301 (327)
T d1utca2         301 F  301 (327)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.36  E-value=0.032  Score=48.71  Aligned_cols=197  Identities=12%  Similarity=0.285  Sum_probs=121.6

Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEe------cCCCEEEEEeC--C--CeEEEEEcCC-CCeeE
Q 010470          235 YNSARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAIT------HDNRSVIAASS--S--NNLYVWDVNS-GRVRH  303 (510)
Q Consensus       235 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~--d--~~i~iwd~~~-~~~~~  303 (510)
                      |+..+++.....+-|.+||++ |+.+..+.  .+.+..+..-      .....+++++.  +  ..|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            455677777777779999996 77766654  3445544432      12223555552  2  3688888753 23333


Q ss_pred             eecCC-------CCceEEEEE--ecCCCC-EEEEEeCCCcEEEEECC---CC----eEeeeeeecCceeEEEEcCCCCEE
Q 010470          304 TLTGH-------TDKVCAVDV--SKISSR-HVVSAAYDRTLKVWDLH---KG----YCVNTIIFHSNCNALAFSMDGQTI  366 (510)
Q Consensus       304 ~~~~~-------~~~v~~i~~--~~~~~~-~l~s~~~dg~i~iwd~~---~~----~~~~~~~~~~~i~~i~~~~~~~~l  366 (510)
                      .+...       ...+.++++  ++.++. ++++...+|.+..|.+.   .+    ..++.+.....+..+.+.+....|
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence            33221       124666776  554444 56677778998888652   23    456677777889999999998999


Q ss_pred             EEecCCCcEEEEECCC-----Cceeeeecc-cccccEEEEEEcC--C--CCEEEEEecCCcEEEEEcCC-ceeeeEeec
Q 010470          367 FSGHIDGNLRLWDIQT-----GKLLSEVAA-HSLAAVTSISLSR--S--GNIILTSGRDNLHNLFDIRS-LEVCGSLRA  434 (510)
Q Consensus       367 ~~~~~dg~i~i~d~~~-----~~~~~~~~~-~~~~~i~~i~~~~--~--~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~  434 (510)
                      +.+-.+.-|..++...     +..+..... +-...+..+++-.  +  |-+|++.-.+++..+||... ...+..|..
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i  273 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI  273 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence            9998887777777642     122222222 2225667776543  2  33455555778999999876 466666653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.034  Score=47.38  Aligned_cols=214  Identities=10%  Similarity=0.055  Sum_probs=99.5

Q ss_pred             eEEEEeCCCCccee--cccccccceeEEEEecCCCEEEEEeC---------CCeEEEEEcCCCCeeEeecCC--CCceEE
Q 010470          248 SIKLWDTNTGSLSS--TLYGCLGSVLDLAITHDNRSVIAASS---------SNNLYVWDVNSGRVRHTLTGH--TDKVCA  314 (510)
Q Consensus       248 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~--~~~v~~  314 (510)
                      .+.+||+.+++-..  .+......- +++. -++..++.|+.         -..+.+||..+......-...  ...-.+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCcccee-EEEE-ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence            57899998865322  222211111 2222 25566666542         135778887765433221111  111111


Q ss_pred             EEEecCCCCEEEEEeCCC-----cEEEEECCCCeEeeeeeecCc--eeEEEEcCCCCEEEEecCC-----CcEEEEECCC
Q 010470          315 VDVSKISSRHVVSAAYDR-----TLKVWDLHKGYCVNTIIFHSN--CNALAFSMDGQTIFSGHID-----GNLRLWDIQT  382 (510)
Q Consensus       315 i~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~  382 (510)
                      + . . ++..++.++.++     .+..+|..+............  -.++... ++..++.|+.+     ..+..||..+
T Consensus        98 ~-~-~-~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~  173 (288)
T d1zgka1          98 G-V-I-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER  173 (288)
T ss_dssp             E-E-E-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             c-c-c-ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccc
Confidence            2 1 1 455555555433     344577766554322222211  1222222 44555555543     3578888876


Q ss_pred             CceeeeecccccccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEE
Q 010470          383 GKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAA  457 (510)
Q Consensus       383 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  457 (510)
                      ......-.........+... .++.+++.++.+     .....||..+......-........    ..+...++++++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~----~~~~~~~~~l~v~  248 (288)
T d1zgka1         174 NEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA----LGITVHQGRIYVL  248 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEE
T ss_pred             cccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccCcccc----eEEEEECCEEEEE
Confidence            54332221111111122222 235566665544     3567778776554332221111111    1223347888888


Q ss_pred             EcCCC-----eEEEEeCCCc
Q 010470          458 GSADG-----SVYIWSISKA  472 (510)
Q Consensus       458 ~~~dg-----~i~iwd~~~~  472 (510)
                      |+.++     .|.+||+.++
T Consensus       249 GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         249 GGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CCBCSSCBCCEEEEEETTTT
T ss_pred             ecCCCCeecceEEEEECCCC
Confidence            87654     3788998764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.14  E-value=0.089  Score=47.82  Aligned_cols=221  Identities=11%  Similarity=0.089  Sum_probs=110.3

Q ss_pred             cceeEEEEecCCCEEEEEe-CC----CeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEEEEeC------------
Q 010470          268 GSVLDLAITHDNRSVIAAS-SS----NNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAY------------  330 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~------------  330 (510)
                      -.+..++++|++++++.+- .+    ..++++|+.+++.+...- .......+.|.+ ++..|+....            
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCC
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcC-CCCEEEEEEeccccCccccccc
Confidence            3445678899999988653 23    379999999998654221 111224678988 5555443322            


Q ss_pred             ----CCcEEEEECCCCeEeee--eeecC---ceeEEEEcCCCCEEEEec---CCCc--EEEEECCCCce-------eeee
Q 010470          331 ----DRTLKVWDLHKGYCVNT--IIFHS---NCNALAFSMDGQTIFSGH---IDGN--LRLWDIQTGKL-------LSEV  389 (510)
Q Consensus       331 ----dg~i~iwd~~~~~~~~~--~~~~~---~i~~i~~~~~~~~l~~~~---~dg~--i~i~d~~~~~~-------~~~~  389 (510)
                          ...|..|.+.++..-..  +....   .+..+..++++++++...   .++.  +.+.|+.....       ...+
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  282 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEe
Confidence                23577888776533222  22221   255677888999877432   2233  44455433211       0111


Q ss_pred             cccccccEEEEEEcCCCCEEEEEec---CCcEEEEEcCCcee--eeEeec-CCCeeecCceeEEEcCCCCEEEEE-cCCC
Q 010470          390 AAHSLAAVTSISLSRSGNIILTSGR---DNLHNLFDIRSLEV--CGSLRA-TGNRVASNWSRSCISPDESYVAAG-SADG  462 (510)
Q Consensus       390 ~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~--~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~-~~dg  462 (510)
                      .........-+. +.++.+++....   ++.+...++.....  ...+-. +......    -.++..+.+|+.. ..++
T Consensus       283 ~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~----~~~~~~~~~lvl~~~~~~  357 (430)
T d1qfma1         283 IDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE----WVACVRSNFLVLCYLHDV  357 (430)
T ss_dssp             ECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE----EEEEETTTEEEEEEEETT
T ss_pred             ecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceee----eEEEEECCEEEEEEEcCC
Confidence            111112222222 222333333332   34566666654321  112222 2221111    2334445555544 4554


Q ss_pred             --eEEEEeCCCcceeecccccCcCEEEEEEeCCCC
Q 010470          463 --SVYIWSISKADIVRTLKEHTAPVLSCSWSGLGK  495 (510)
Q Consensus       463 --~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  495 (510)
                        .|++++..++..........+.|..+...++..
T Consensus       358 ~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~  392 (430)
T d1qfma1         358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT  392 (430)
T ss_dssp             EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred             EeEEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence              588999888766554444445565555555544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.044  Score=48.38  Aligned_cols=178  Identities=12%  Similarity=0.098  Sum_probs=103.1

Q ss_pred             cceEEEEEecCCCEEEEeeCCCeEEEEeCCC---------CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010470          226 GGCASILFEYNSARLISGGQDKSIKLWDTNT---------GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDV  296 (510)
Q Consensus       226 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  296 (510)
                      ...+-+++++...+++.|+.++ ++|.....         ..........-..|..++|+.+  .+++. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            3466788888878888888775 55665321         1111111112236888999744  44444 4566888887


Q ss_pred             CCCCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeee------eeecCceeEEEEcCCCCEEEEec
Q 010470          297 NSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNT------IIFHSNCNALAFSMDGQTIFSGH  370 (510)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~i~~i~~~~~~~~l~~~~  370 (510)
                      .+-...........++..+.++|   ..++....+|.+.++++..+.....      +.......+++|++.|..++++.
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            76554444444456788888776   4566677789999999988754322      12234567777777777777663


Q ss_pred             CCCcEEE-EECCCCceeeeecccccccEEEEEEcCCCCEEEEE
Q 010470          371 IDGNLRL-WDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTS  412 (510)
Q Consensus       371 ~dg~i~i-~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  412 (510)
                      .++ ..+ -++.....+...... ...+.+|.|-.+..++++-
T Consensus       190 g~~-~q~k~~i~~~~~~~~p~~~-~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         190 NGE-MEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             TTE-EEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEE
T ss_pred             CCc-eeeccCCCCccccCCCcCC-CcceeEEEEecCceEEEEE
Confidence            321 111 122111111111111 2568899998776666544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.07  E-value=0.08  Score=46.13  Aligned_cols=197  Identities=15%  Similarity=0.257  Sum_probs=113.5

Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEec----C-CCCEEEEEeC--C--CcEEEEECCC-CeEee
Q 010470          277 HDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSK----I-SSRHVVSAAY--D--RTLKVWDLHK-GYCVN  346 (510)
Q Consensus       277 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~----~-~~~~l~s~~~--d--g~i~iwd~~~-~~~~~  346 (510)
                      |+.++++.....+-|++||+. |+.+..+.  .+.+..|..-.    . ....++.++.  +  .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            455677777777779999986 77777664  34555555432    0 1223444442  2  3577776642 22233


Q ss_pred             eeeec--------CceeEEEE--cCC-CC-EEEEecCCCcEEEEECC---CC----ceeeeecccccccEEEEEEcCCCC
Q 010470          347 TIIFH--------SNCNALAF--SMD-GQ-TIFSGHIDGNLRLWDIQ---TG----KLLSEVAAHSLAAVTSISLSRSGN  407 (510)
Q Consensus       347 ~~~~~--------~~i~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~~i~~i~~~~~~~  407 (510)
                      .+...        ..+..+|+  +|. |. ++++...+|.+..|.+.   .+    +.++.+...  ..+..+.+++...
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~--~q~EGCVvDde~~  192 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN--SQTEGMAADDEYG  192 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS--SCEEEEEEETTTT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC--CccceEEEeCCCC
Confidence            22211        23667777  554 54 45677788998888663   23    344455544  6799999999999


Q ss_pred             EEEEEecCCcEEEEEcCC--ceeeeEe-ecCCCeeecCceeEEE--cCC--CCEEEEEcCCCeEEEEeCCC-cceeecc
Q 010470          408 IILTSGRDNLHNLFDIRS--LEVCGSL-RATGNRVASNWSRSCI--SPD--ESYVAAGSADGSVYIWSISK-ADIVRTL  478 (510)
Q Consensus       408 ~l~~~~~d~~i~i~d~~~--~~~~~~~-~~~~~~~~~~~~~~~~--s~~--~~~l~~~~~dg~i~iwd~~~-~~~~~~~  478 (510)
                      .|+.+-.+..+..++..-  ......+ ......+...+-.+++  ..+  |-+|++.-.+++..|||... ...+..+
T Consensus       193 ~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         193 SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            999998887777776541  1111111 1111222333333443  233  34455555678999999866 3444444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.98  E-value=0.099  Score=45.65  Aligned_cols=191  Identities=15%  Similarity=0.126  Sum_probs=106.7

Q ss_pred             ccccccceEEEEEecCCCEEEEeeC------------CCeEEEEeCCCCccee-ccc--c-----cccceeEEEE--ecC
Q 010470          221 INAHEGGCASILFEYNSARLISGGQ------------DKSIKLWDTNTGSLSS-TLY--G-----CLGSVLDLAI--THD  278 (510)
Q Consensus       221 ~~~h~~~v~~~~~s~~~~~l~s~~~------------dg~i~iwd~~~~~~~~-~~~--~-----~~~~v~~~~~--~~~  278 (510)
                      +++-..+.-.++..|+|..+++++.            .|.|.++|+.+..... .+.  +     ..-....+.+  .++
T Consensus        30 i~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~d  109 (340)
T d1v04a_          30 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  109 (340)
T ss_dssp             CTTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTT
T ss_pred             cCCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCC
Confidence            3433334556888899877766542            4899999987653311 111  1     0112334443  455


Q ss_pred             CCE-EEEEe---CCCeEEEEEcCCCCe----eEeecC-CCCceEEEEEecCCCCEEEEEeC---------------CCcE
Q 010470          279 NRS-VIAAS---SSNNLYVWDVNSGRV----RHTLTG-HTDKVCAVDVSKISSRHVVSAAY---------------DRTL  334 (510)
Q Consensus       279 ~~~-l~~~~---~d~~i~iwd~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~l~s~~~---------------dg~i  334 (510)
                      |.. |++..   ...+|-+|++.....    +.++.. ......++.+.. ++.+++|-..               -+..
T Consensus       110 g~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g  188 (340)
T d1v04a_         110 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWS  188 (340)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred             CcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCce
Confidence            653 44443   345788888764431    122221 224467788877 6667776311               1223


Q ss_pred             EEEECCCCeEeeeeeecCceeEEEEcCCCCEEEE-ecCCCcEEEEECCCCceeeee-cccccccEEEEEEcCC-CCEEEE
Q 010470          335 KVWDLHKGYCVNTIIFHSNCNALAFSMDGQTIFS-GHIDGNLRLWDIQTGKLLSEV-AAHSLAAVTSISLSRS-GNIILT  411 (510)
Q Consensus       335 ~iwd~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~i~~~~~-~~~l~~  411 (510)
                      .+|....+........-...+.|+++|++++|++ -+..+.|++|++......... ...-.+.+-.+.+.+. |.+.++
T Consensus       189 ~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         189 FVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             eEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            3444434443333334456899999999987765 456778999998654322221 1112267888999874 454444


Q ss_pred             E
Q 010470          412 S  412 (510)
Q Consensus       412 ~  412 (510)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.87  E-value=0.077  Score=46.36  Aligned_cols=57  Identities=18%  Similarity=0.095  Sum_probs=34.6

Q ss_pred             eeEEEcCCCCEEEEE-cCCCeEEEEeCCCcceeecc--cccCcCEEEEEEeCCCCcEEEe
Q 010470          444 SRSCISPDESYVAAG-SADGSVYIWSISKADIVRTL--KEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       444 ~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      +.++++||+++|+++ +..+.|++|++.....+...  ..-.+.+-.+.+.+.+..+.++
T Consensus       209 NGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         209 NGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             ceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            448999999876554 55788999998754322211  1123446677887644444443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.06  Score=45.72  Aligned_cols=205  Identities=12%  Similarity=0.052  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCeeEe--ecCCCCceEEEEEecCCCCEEEEEeC---------CCcEEEEECCCCeEeeeeeecCc--eeE
Q 010470          290 NLYVWDVNSGRVRHT--LTGHTDKVCAVDVSKISSRHVVSAAY---------DRTLKVWDLHKGYCVNTIIFHSN--CNA  356 (510)
Q Consensus       290 ~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~--i~~  356 (510)
                      .+.+||+.+++-...  +...... .++...  ++.+++.|+.         -..+.+||..+......-....+  -..
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSG-LAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBS-CEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             eEEEEECCCCeEEECCCCCCccce-eEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            678899888753322  2211111 122222  4566666653         23677889877665433222211  112


Q ss_pred             EEEcCCCCEEEEecCCCc-----EEEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEecC-----CcEEEEEcCCc
Q 010470          357 LAFSMDGQTIFSGHIDGN-----LRLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRD-----NLHNLFDIRSL  426 (510)
Q Consensus       357 i~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~i~d~~~~  426 (510)
                      ++. .+++.++.|+.++.     +..+|..+..............-.++... ++..++.|+.+     ..+..||..+.
T Consensus        97 ~~~-~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~  174 (288)
T d1zgka1          97 VGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN  174 (288)
T ss_dssp             EEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             ccc-cceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeecccc
Confidence            222 25666666654443     44566655543222111110111112222 34555555543     35778888765


Q ss_pred             eeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCC-----CeEEEEeCCCcceeec--ccccCcCEEEEEEeCCCCcEEE
Q 010470          427 EVCGSLRATGNRVASNWSRSCISPDESYVAAGSAD-----GSVYIWSISKADIVRT--LKEHTAPVLSCSWSGLGKPLAS  499 (510)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s  499 (510)
                      .....-........   . .....++.+++.|+.+     ..+..||..+.+....  ......... ++. .++++++.
T Consensus       175 ~~~~~~~~~~~~~~---~-~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~-~~~-~~~~l~v~  248 (288)
T d1zgka1         175 EWRMITAMNTIRSG---A-GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG-ITV-HQGRIYVL  248 (288)
T ss_dssp             EEEECCCCSSCCBS---C-EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEE
T ss_pred             cccccccccccccc---c-cccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceE-EEE-ECCEEEEE
Confidence            44322111111111   1 2223345666666544     3467777766543322  111111112 222 26778888


Q ss_pred             eeCCCe
Q 010470          500 ADKNGV  505 (510)
Q Consensus       500 ~~~dg~  505 (510)
                      ||.++.
T Consensus       249 GG~~~~  254 (288)
T d1zgka1         249 GGYDGH  254 (288)
T ss_dssp             CCBCSS
T ss_pred             ecCCCC
Confidence            776543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.32  E-value=0.16  Score=39.72  Aligned_cols=222  Identities=13%  Similarity=0.142  Sum_probs=112.4

Q ss_pred             CCEEEEeeCCCeEEEEeCCCCcceecccccccceeEEEEecCC--CEEEEE-e-----CCCeEEEEEcCCCCeeEeecCC
Q 010470          237 SARLISGGQDKSIKLWDTNTGSLSSTLYGCLGSVLDLAITHDN--RSVIAA-S-----SSNNLYVWDVNSGRVRHTLTGH  308 (510)
Q Consensus       237 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~-----~d~~i~iwd~~~~~~~~~~~~~  308 (510)
                      .++++++...|.+.++-+..++.+..-.   .+|.... .|..  .++..+ .     .-..|++-++...-....+...
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            3477888889999999888776654322   2222211 1111  111111 1     1123444443321222222222


Q ss_pred             C-CceEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEeeeeeec--CceeE--------EEEc-CCCCEEEEecC-CCcE
Q 010470          309 T-DKVCAVDVSKISSRHVVSAAYDRTLKVWDLHKGYCVNTIIFH--SNCNA--------LAFS-MDGQTIFSGHI-DGNL  375 (510)
Q Consensus       309 ~-~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~--------i~~~-~~~~~l~~~~~-dg~i  375 (510)
                      . -.|.+++.  ++.+.+++|+......+|-++.|+.......+  +-++.        +.+. ++..-++++.- .|.+
T Consensus       102 k~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         102 KPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             CSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             ceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            2 34555555  46788899999888999998888765443332  11222        2221 12222333322 4555


Q ss_pred             EEEECCCCceeeeecccccccEEEEEEcCCCCEEEEEec---CCcEEEEEcCCceeeeEeecCCCeee----cCceeEEE
Q 010470          376 RLWDIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGR---DNLHNLFDIRSLEVCGSLRATGNRVA----SNWSRSCI  448 (510)
Q Consensus       376 ~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~  448 (510)
                      ++++...            +.++...+.+..+. +++-.   .....-+|++++..-.. ..+.....    ..++-+-+
T Consensus       180 ri~tpke------------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerv-e~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         180 RVFDSGE------------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDL-ELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             EEECCSS------------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEEC-CCSSCHHHHHCCSEEEEEEE
T ss_pred             EEecCCC------------CcccceeEccCcee-eeccCCCCceEEEEEecccCceeee-ecCcccceeecceEEEeeee
Confidence            5555433            45555556665554 33221   11222457765443221 11111111    11223558


Q ss_pred             cCCCCEEEEEcCCCeEEEEeCCCcceeecccc
Q 010470          449 SPDESYVAAGSADGSVYIWSISKADIVRTLKE  480 (510)
Q Consensus       449 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  480 (510)
                      .|++++++.+-.||.=.+|.  +|+.+...++
T Consensus       246 ~Pdd~L~iiakrdG~s~lF~--nGk~in~p~G  275 (313)
T d2hu7a1         246 LPDGRLAVVARREGRSAVFI--DGERVEAPQG  275 (313)
T ss_dssp             CTTSCEEEEEEETTEEEEEE--TTEEECCCSS
T ss_pred             CCCCcEEEEEecCCchheee--cceEecCCCC
Confidence            99999989999999999986  4665555443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.44  Score=41.75  Aligned_cols=181  Identities=13%  Similarity=0.011  Sum_probs=98.3

Q ss_pred             CceEEEEEecCCCCEEEEEeCCCcEEEEECC-----------CCeEeeeeeecCceeEEEEcCCCCEEEEecCCCcEEEE
Q 010470          310 DKVCAVDVSKISSRHVVSAAYDRTLKVWDLH-----------KGYCVNTIIFHSNCNALAFSMDGQTIFSGHIDGNLRLW  378 (510)
Q Consensus       310 ~~v~~i~~~~~~~~~l~s~~~dg~i~iwd~~-----------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  378 (510)
                      ....-+++++ ...+++.|+.++ +.|..+.           ......... -..+..++|+.  ..+++.. ++.+..+
T Consensus        37 ~~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~-ip~v~~vafs~--d~l~v~~-~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPDVIFVCFHG--DQVLVST-RNALYSL  110 (381)
T ss_dssp             SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTTEEEEEEET--TEEEEEE-SSEEEEE
T ss_pred             cccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC-CCCeEEEEeeC--CEEEEEe-CCCEEEE
Confidence            3455677777 566777777664 5666531           111111111 13578888864  4455543 4568888


Q ss_pred             ECCCCceeeeecccccccEEEEEEcCCCCEEEEEecCCcEEEEEcCCceeeeEeecCC-CeeecCceeEEEcCCCCEEEE
Q 010470          379 DIQTGKLLSEVAAHSLAAVTSISLSRSGNIILTSGRDNLHNLFDIRSLEVCGSLRATG-NRVASNWSRSCISPDESYVAA  457 (510)
Q Consensus       379 d~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~  457 (510)
                      +...-.......... .++..+.++|.  .++....+|.+.++++..+.......+.. ........+++|++.|..+++
T Consensus       111 ~~~~l~~~~~~~~~~-~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         111 DLEELSEFRTVTSFE-KPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             ESSSTTCEEEEEECS-SCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             Eeecccccccccccc-ccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            876654443333333 56778887774  56667778899999998775433221111 111123445777777777777


Q ss_pred             EcCCCeEEEE-eCCCcceeecccccCcCEEEEEEeCCCCcEEEe
Q 010470          458 GSADGSVYIW-SISKADIVRTLKEHTAPVLSCSWSGLGKPLASA  500 (510)
Q Consensus       458 ~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  500 (510)
                      +..++ ..+. ++.....+.........|.++.|-.+..++++-
T Consensus       188 ~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            64332 2211 111111111111234468889998766555544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.42  E-value=0.56  Score=42.49  Aligned_cols=60  Identities=13%  Similarity=0.195  Sum_probs=42.3

Q ss_pred             CceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec-------ccccccEEEEEEcCC---CCEEEE
Q 010470          352 SNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVA-------AHSLAAVTSISLSRS---GNIILT  411 (510)
Q Consensus       352 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~i~~i~~~~~---~~~l~~  411 (510)
                      ..+.+|+|.|+|+++++--..|.|++++..++.......       .........|+|+|+   ..+++.
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            568899999999988877667999999987765432221       122257889999985   445544

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.83  E-value=0.65  Score=36.29  Aligned_cols=210  Identities=13%  Similarity=0.124  Sum_probs=107.2

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecC-CCCEEEEE------eCCCcEEEEECCCCeEeeeeee
Q 010470          278 DNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKI-SSRHVVSA------AYDRTLKVWDLHKGYCVNTIIF  350 (510)
Q Consensus       278 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~------~~dg~i~iwd~~~~~~~~~~~~  350 (510)
                      +++.++++...|.+.++-+..++.+..-+   .+|..... |. .-.++...      -.-..|.+-++...-.-..+..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            44577888889999999888777554322   33332221 21 11111111      1112334444431111122222


Q ss_pred             cC--ceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEE---------EcCCCCEEEEEec-CCcE
Q 010470          351 HS--NCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSIS---------LSRSGNIILTSGR-DNLH  418 (510)
Q Consensus       351 ~~--~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~---------~~~~~~~l~~~~~-d~~i  418 (510)
                      ..  .|.+++.. +.+..++|+......+|-+..|+...-...+..+-|+.+.         +.++..-++++.- .|.+
T Consensus       101 pk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         101 VKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             SCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             CceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            22  24555554 5567778888888889988888755443333334444432         2222223444443 5666


Q ss_pred             EEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcC----CCeEEEEeCCCcceeec-ccc------cCcCEEE
Q 010470          419 NLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSA----DGSVYIWSISKADIVRT-LKE------HTAPVLS  487 (510)
Q Consensus       419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~-~~~------~~~~v~~  487 (510)
                      +|++...+....               ..++++.+. +++-.    .--| -+|+.+++.... +..      ..-.|+-
T Consensus       180 ri~tpkeGS~~~---------------ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~  242 (313)
T d2hu7a1         180 RVFDSGEGSFSS---------------ASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITW  242 (313)
T ss_dssp             EEECCSSEEEEE---------------EEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEE
T ss_pred             EEecCCCCcccc---------------eeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEe
Confidence            666665544332               333443333 33221    1123 346665543221 111      2234666


Q ss_pred             EEEeCCCCcEEEeeCCCeEEEc
Q 010470          488 CSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       488 ~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      +-+.|+++.++.+-.||.=.+|
T Consensus       243 ~~Y~Pdd~L~iiakrdG~s~lF  264 (313)
T d2hu7a1         243 LGYLPDGRLAVVARREGRSAVF  264 (313)
T ss_dssp             EEECTTSCEEEEEEETTEEEEE
T ss_pred             eeeCCCCcEEEEEecCCchhee
Confidence            7789999988888888887665

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.42  E-value=1.7  Score=39.17  Aligned_cols=53  Identities=11%  Similarity=0.125  Sum_probs=37.6

Q ss_pred             cceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeE--eec------CCCCceEEEEEecC
Q 010470          268 GSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRH--TLT------GHTDKVCAVDVSKI  320 (510)
Q Consensus       268 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~------~~~~~v~~i~~~~~  320 (510)
                      ...++|+|.|+++++++--..|.|++++..++....  .+.      .-......|+++|.
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            456899999999977766567999999877765432  221      12345788999984

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=91.10  E-value=3.4  Score=33.97  Aligned_cols=238  Identities=16%  Similarity=0.123  Sum_probs=106.5

Q ss_pred             eEEEEeCCC-CcceecccccccceeEEEEecCCCEEEEEeCCCeEEEEEcCCCCeeEeecCCCCceEEEEEecCCCCEEE
Q 010470          248 SIKLWDTNT-GSLSSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVV  326 (510)
Q Consensus       248 ~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~  326 (510)
                      +|+.|--.. +............|..++..  ..+.++.. ||.|+.|-.+..-.+-.-......|..+..   ...+.+
T Consensus         5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~---G~~~~~   78 (273)
T d1jtdb_           5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAA---GNYHSL   78 (273)
T ss_dssp             EEEEESSCCSSSTTCCCGGGSSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEE---CSSEEE
T ss_pred             EEEEECCCCCCCceeccccCCCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEec---CCCcee
Confidence            577775322 11111122234457777653  33344444 899999976543322222223344555544   223333


Q ss_pred             EEeCCCcEEEEECCCCeEee-eeeecCceeEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecccccccEEEEEEcCC
Q 010470          327 SAAYDRTLKVWDLHKGYCVN-TIIFHSNCNALAFSMDGQTIFSGHIDGNLRLWDIQTGKLLSEVAAHSLAAVTSISLSRS  405 (510)
Q Consensus       327 s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~i~~~~~  405 (510)
                      .- .||.+..|.....-... .......+..+....  ...+. ..||.+..|......... ........|..+.-.  
T Consensus        79 al-~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~--~~~~~-~~dg~v~~~g~~~~~~~~-~~~~~~~~v~~~~~~--  151 (273)
T d1jtdb_          79 AL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYA-LKDGKVIAWGDDSDGQTT-VPAEAQSGVTALDGG--  151 (273)
T ss_dssp             EE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEET--TEEEE-EETTEEEEEECCTTSTTS-CCGGGGSSEEEEEEC--
T ss_pred             ee-eeeeeeccCCCcceeeccccccccceeEEeeec--ccccc-cccccceecccCCCCcee-eeccCCceEEEEecc--
Confidence            33 48999999764321111 111122344444432  22222 247888888744322211 111111345444432  


Q ss_pred             CCEEEEEecCCcEEEEEcCCceeeeEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcceeecccccCcCE
Q 010470          406 GNIILTSGRDNLHNLFDIRSLEVCGSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADIVRTLKEHTAPV  485 (510)
Q Consensus       406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  485 (510)
                       .+.+....++.++.|-.............    ...+..+  +....+.+.-. ||.|+.|=......+..-......|
T Consensus       152 -~~~~~~~~~g~~~~~G~~~~g~~~~~~~~----~~~v~~I--s~G~~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v  223 (273)
T d1jtdb_         152 -VYTALAVKNGGVIAWGDNYFGQTTVPAEA----QSGVDDV--AGGIFHSLALK-DGKVIAWGDNRYKQTTVPTEALSGV  223 (273)
T ss_dssp             -SSEEEEEETTEEEEEECCTTSTTSCCGGG----SSSEEEE--EECSSEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSC
T ss_pred             -ceeeeeecccceeEeecccCCcccccccc----cCCccce--eccceeeEEEe-cCcEEEcCCCCCCccCCCccCCCCc
Confidence             22233335677888865432211110011    1122223  33333333333 7899999644322221111122346


Q ss_pred             EEEEEeCCCCcEEEeeCCCeEEEc
Q 010470          486 LSCSWSGLGKPLASADKNGVVCVW  509 (510)
Q Consensus       486 ~~~~~~~~~~~l~s~~~dg~i~iw  509 (510)
                      ..|+-.. ...++.  .||.|..|
T Consensus       224 ~~I~~G~-~~~~~l--~~g~v~~W  244 (273)
T d1jtdb_         224 SAIASGE-WYSLAL--KNGKVIAW  244 (273)
T ss_dssp             CEEEECS-SCEEEE--ETTEEEEE
T ss_pred             EEEEeCc-ceEEEE--ECCEEEEE
Confidence            6666433 223333  37888888

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.18  E-value=4.7  Score=34.10  Aligned_cols=234  Identities=7%  Similarity=0.026  Sum_probs=127.2

Q ss_pred             cCCCEEEEeeCCCeEEEEeCCCCcc----eecccccccceeEEEEecCCCEEEEEeCCCeEEEEE---cCC------CCe
Q 010470          235 YNSARLISGGQDKSIKLWDTNTGSL----SSTLYGCLGSVLDLAITHDNRSVIAASSSNNLYVWD---VNS------GRV  301 (510)
Q Consensus       235 ~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd---~~~------~~~  301 (510)
                      |+...+++-+.+|.|+--++.+.+.    -..+. -...+..+........|+.-++.|.++...   +..      |.+
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p   81 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence            4566788888888888655432110    01111 234455555555566677777778766544   332      223


Q ss_pred             eEeec--CCCCceEEEEEec-C-CCCEEEEEeCCCcEEEEECCCC--------eEeeeeeecCceeEEEEcCCCCEEEEe
Q 010470          302 RHTLT--GHTDKVCAVDVSK-I-SSRHVVSAAYDRTLKVWDLHKG--------YCVNTIIFHSNCNALAFSMDGQTIFSG  369 (510)
Q Consensus       302 ~~~~~--~~~~~v~~i~~~~-~-~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~i~~i~~~~~~~~l~~~  369 (510)
                      +..+-  .....+..+...+ . ...+++..+..|.++..++..-        .....+.....+..+.+..+...++.+
T Consensus        82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~  161 (323)
T d1wp5a_          82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV  161 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred             ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEE
Confidence            32221  1233444433322 1 3578888999999999986421        112222333446666666677788888


Q ss_pred             cCCCcEEEEECCCC-------ceeeeecccccccEEE-EEEcCCCCEEEEEecCCcEEEEEcCCcee-------eeEeec
Q 010470          370 HIDGNLRLWDIQTG-------KLLSEVAAHSLAAVTS-ISLSRSGNIILTSGRDNLHNLFDIRSLEV-------CGSLRA  434 (510)
Q Consensus       370 ~~dg~i~i~d~~~~-------~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~  434 (510)
                      +..|.+..|+...-       .-+.-+.......+.+ ..+.+++..+++.+..|..+...+.....       +..+..
T Consensus       162 t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~  241 (323)
T d1wp5a_         162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRE  241 (323)
T ss_dssp             ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCC
T ss_pred             EecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhccccccccccccccc
Confidence            99999999986432       2233333333244544 44556677888888888888766543221       111111


Q ss_pred             CCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 010470          435 TGNRVASNWSRSCISPDESYVAAGSADGSVYIWSIS  470 (510)
Q Consensus       435 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  470 (510)
                      ... ....+..+....+...|+..+..|.+.-.++.
T Consensus       242 ~k~-~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         242 LKA-NPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             CSS-SCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             ccc-ccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence            000 00112223344455566666667776655543

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.04  E-value=5.8  Score=33.52  Aligned_cols=227  Identities=11%  Similarity=0.102  Sum_probs=125.4

Q ss_pred             cCCCEEEEEeCCCeEEEEEcCC----CCeeEeecCCCCceEEEEEecCCCCEEEEEeCCCcEEEEE---CC------CCe
Q 010470          277 HDNRSVIAASSSNNLYVWDVNS----GRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTLKVWD---LH------KGY  343 (510)
Q Consensus       277 ~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~~~dg~i~iwd---~~------~~~  343 (510)
                      |+...+++-+.+|.|+--++.+    +..-..+. ..+.+..+.... ....++.-+..|.++...   +.      .|.
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~-t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~   80 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ   80 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEc-CCCEEEEEecCCEEEEEeeccCcccccccccc
Confidence            5667788899999998666532    11111122 233454444444 345555556677766544   33      144


Q ss_pred             Eeeeeee---cCce-eEEEEcC--CCCEEEEecCCCcEEEEECCCC------ceeeeecccccccEEEEEEcCCCCEEEE
Q 010470          344 CVNTIIF---HSNC-NALAFSM--DGQTIFSGHIDGNLRLWDIQTG------KLLSEVAAHSLAAVTSISLSRSGNIILT  411 (510)
Q Consensus       344 ~~~~~~~---~~~i-~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~~  411 (510)
                      ++..+..   ...+ ..+...+  ...+|+..+..|.+...++...      +....+.......+..+.+......++.
T Consensus        81 pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l  160 (323)
T d1wp5a_          81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL  160 (323)
T ss_dssp             EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred             cceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEE
Confidence            4433321   1223 3333332  4678888999999999886322      1222233333367777777777788999


Q ss_pred             EecCCcEEEEEcCCceee-------eEeecCCCeeecCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcce-------eec
Q 010470          412 SGRDNLHNLFDIRSLEVC-------GSLRATGNRVASNWSRSCISPDESYVAAGSADGSVYIWSISKADI-------VRT  477 (510)
Q Consensus       412 ~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~  477 (510)
                      .+..|.+..|+...-...       ..+......  .-+....+.+++..|+..+..|..+...+.....       +..
T Consensus       161 ~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D--~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~  238 (323)
T d1wp5a_         161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGD--YIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI  238 (323)
T ss_dssp             EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTC--CEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred             EEecceeeEeecccccccCccccccccccccccc--ccchhhhccccccceeeeeeeheeecccchhhcccccccccccc
Confidence            999999999987643222       111111111  0011234566778888889899888766543211       111


Q ss_pred             c---cccCcCEEEEEEeCCCCcEEEeeCCCeEE
Q 010470          478 L---KEHTAPVLSCSWSGLGKPLASADKNGVVC  507 (510)
Q Consensus       478 ~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  507 (510)
                      +   ......|.++....+...|+..+..|.+.
T Consensus       239 ~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~  271 (323)
T d1wp5a_         239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIE  271 (323)
T ss_dssp             SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred             ccccccccceeeeeEecCCCCEEEEEeCCCEEE
Confidence            2   11223465655555555566666666653

>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Mediator hinge subcomplex-like
superfamily: Mediator hinge subcomplex-like
family: CSE2-like
domain: RNA polymerase II holoenzyme component SRB7 (MED21)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.33  E-value=4.6  Score=28.62  Aligned_cols=7  Identities=43%  Similarity=0.847  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 010470           52 DNLETEL   58 (510)
Q Consensus        52 ~~l~~el   58 (510)
                      ..+...|
T Consensus        59 ~elA~di   65 (129)
T d1ykhb1          59 DELSTDI   65 (129)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=82.90  E-value=2.8  Score=28.88  Aligned_cols=19  Identities=16%  Similarity=0.305  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 010470           47 WKEKADNLETELQQCYKAQ   65 (510)
Q Consensus        47 ~~~~~~~l~~el~~~~k~~   65 (510)
                      +.++...++.++++++..+
T Consensus        33 ld~~rr~l~~~~e~l~~~r   51 (110)
T d1seta1          33 LDREVQELKKRLQEVQTER   51 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444433333

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=12  Score=30.56  Aligned_cols=27  Identities=11%  Similarity=0.132  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccchhh
Q 010470            7 AREAIKHALKALRKRHLVEEGAHAPAI   33 (510)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (510)
                      +..-......-+++|-.+|+.-...+-
T Consensus        21 ~~~~~~~~~~~~~eRa~iE~eYak~L~   47 (288)
T d2efla1          21 GIDILEKYIKFVKERTEIELSYAKQLR   47 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344466777778777765444333