Citrus Sinensis ID: 010480
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 509 | 2.2.26 [Sep-21-2011] | |||||||
| Q05001 | 714 | NADPH--cytochrome P450 re | N/A | no | 0.954 | 0.680 | 0.810 | 0.0 | |
| Q9SUM3 | 711 | NADPH--cytochrome P450 re | yes | no | 0.962 | 0.689 | 0.764 | 0.0 | |
| P37116 | 690 | NADPH--cytochrome P450 re | N/A | no | 0.954 | 0.704 | 0.722 | 0.0 | |
| Q9SB48 | 692 | NADPH--cytochrome P450 re | no | no | 0.952 | 0.700 | 0.700 | 0.0 | |
| Q3SYT8 | 678 | NADPH--cytochrome P450 re | yes | no | 0.925 | 0.694 | 0.401 | 1e-104 | |
| P04175 | 678 | NADPH--cytochrome P450 re | yes | no | 0.925 | 0.694 | 0.401 | 1e-103 | |
| P16435 | 677 | NADPH--cytochrome P450 re | yes | no | 0.925 | 0.695 | 0.396 | 1e-103 | |
| P00389 | 679 | NADPH--cytochrome P450 re | yes | no | 0.929 | 0.696 | 0.395 | 1e-102 | |
| P00388 | 678 | NADPH--cytochrome P450 re | yes | no | 0.925 | 0.694 | 0.391 | 1e-101 | |
| P37040 | 678 | NADPH--cytochrome P450 re | yes | no | 0.925 | 0.694 | 0.391 | 1e-101 |
| >sp|Q05001|NCPR_CATRO NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/490 (81%), Positives = 447/490 (91%), Gaps = 4/490 (0%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
G KR+VP+ LGDDDQCIEDDF+AWRE VWPELDNLLRD+DD TTVST YTAAI EYRVVF
Sbjct: 226 GGKRIVPLVLGDDDQCIEDDFAAWRENVWPELDNLLRDEDD-TTVSTTYTAAIPEYRVVF 284
Query: 83 YDNADASVGEKSW---GNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT 139
D +D+ + E + G ANG+ VYDAQHPCRSNVAVRKELHTP+SDRSCTHL+FDIAGT
Sbjct: 285 PDKSDSLISEANGHANGYANGNTVYDAQHPCRSNVAVRKELHTPASDRSCTHLDFDIAGT 344
Query: 140 GLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPC 199
GL+Y TGDHVGVYC+NLSETVEEA LL L P+TYFSLH DKEDGTPL S+LPP FPPC
Sbjct: 345 GLSYGTGDHVGVYCDNLSETVEEAERLLNLPPETYFSLHADKEDGTPLAGSSLPPPFPPC 404
Query: 200 SLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSL 259
+LRTALT+YADLL++PKKSALLALAA+ASDP EADRL++LASPAGKDEYAQ +VA+QRSL
Sbjct: 405 TLRTALTRYADLLNTPKKSALLALAAYASDPNEADRLKYLASPAGKDEYAQSLVANQRSL 464
Query: 260 LEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVH 319
LEVM+EFPSAKPPLGVFFAAI PRLQPR+YSISSSPR+APSRIHVTCALVYEKTP GR+H
Sbjct: 465 LEVMAEFPSAKPPLGVFFAAIAPRLQPRFYSISSSPRMAPSRIHVTCALVYEKTPGGRIH 524
Query: 320 KGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQE 379
KG+CSTWMKN++P+E+S DCSWAPIFVRQSNFKLPAD KVP+IMIGPGTGLAPFRGFLQE
Sbjct: 525 KGVCSTWMKNAIPLEESRDCSWAPIFVRQSNFKLPADPKVPVIMIGPGTGLAPFRGFLQE 584
Query: 380 RFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQ 439
R AL+E GAELG ++ FFGCRNRKMDYIYEDELN+F++ GALS+L+VAFSREGPTK+YVQ
Sbjct: 585 RLALKEEGAELGTAVFFFGCRNRKMDYIYEDELNHFLEIGALSELLVAFSREGPTKQYVQ 644
Query: 440 HKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 499
HKM EK+SDIW M+S+GAY+YVCGDAK MARDVHRTLHTI QEQGS+DS++AE VKNLQ
Sbjct: 645 HKMAEKASDIWRMISDGAYVYVCGDAKGMARDVHRTLHTIAQEQGSMDSTQAEGFVKNLQ 704
Query: 500 MTGRYLRDVW 509
MTGRYLRDVW
Sbjct: 705 MTGRYLRDVW 714
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Catharanthus roseus (taxid: 4058) EC: 1EC: .EC: 6EC: .EC: 2EC: .EC: 4 |
| >sp|Q9SUM3|NCPR2_ARATH NADPH--cytochrome P450 reductase 2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/492 (76%), Positives = 438/492 (89%), Gaps = 2/492 (0%)
Query: 18 LLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISE 77
+L GA+RLV VGLGDDDQCIEDDF+AWRE +WPELD +LR++ D T V+TPYTAA+ E
Sbjct: 222 ILVEQGAQRLVQVGLGDDDQCIEDDFTAWREALWPELDTILREEGD-TAVATPYTAAVLE 280
Query: 78 YRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 137
YRV +D+ DA + + N NG+ V+DAQHP ++NVAV++ELHTP SDRSC HLEFDIA
Sbjct: 281 YRVSIHDSEDAKFNDINMANGNGYTVFDAQHPYKANVAVKRELHTPESDRSCIHLEFDIA 340
Query: 138 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 197
G+GLTYETGDHVGV C+NLSETV+EAL LL +SPDTYFSLH +KEDGTP+ S PP P
Sbjct: 341 GSGLTYETGDHVGVLCDNLSETVDEALRLLDMSPDTYFSLHAEKEDGTPISSSLPPPF-P 399
Query: 198 PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQR 257
PC+LRTALT+YA LLSSPKKSAL+ALAAHASDPTEA+RL+HLASPAGKDEY++W+V SQR
Sbjct: 400 PCNLRTALTRYACLLSSPKKSALVALAAHASDPTEAERLKHLASPAGKDEYSKWVVESQR 459
Query: 258 SLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR 317
SLLEVM+EFPSAKPPLGVFFA + PRLQPR+YSISSSP++A +RIHVTCALVYEK PTGR
Sbjct: 460 SLLEVMAEFPSAKPPLGVFFAGVAPRLQPRFYSISSSPKIAETRIHVTCALVYEKMPTGR 519
Query: 318 VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFL 377
+HKG+CSTWMKN++P EKS +CS APIFVRQSNFKLP+D+KVPIIMIGPGTGLAPFRGFL
Sbjct: 520 IHKGVCSTWMKNAVPYEKSENCSSAPIFVRQSNFKLPSDSKVPIIMIGPGTGLAPFRGFL 579
Query: 378 QERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEY 437
QER AL E+G ELGPS+LFFGCRNR+MD+IYE+EL FV+SGAL++L VAFSREGPTKEY
Sbjct: 580 QERLALVESGVELGPSVLFFGCRNRRMDFIYEEELQRFVESGALAELSVAFSREGPTKEY 639
Query: 438 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 497
VQHKMM+K+SDIWNM+S+GAYLYVCGDAK MARDVHR+LHTI QEQGS+DS+KAE VKN
Sbjct: 640 VQHKMMDKASDIWNMISQGAYLYVCGDAKGMARDVHRSLHTIAQEQGSMDSTKAEGFVKN 699
Query: 498 LQMTGRYLRDVW 509
LQ +GRYLRDVW
Sbjct: 700 LQTSGRYLRDVW 711
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Reduces a variety of substrates in vitro, such as cytochrome c, feericyanide and dichloroindophenol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P37116|NCPR_VIGRR NADPH--cytochrome P450 reductase OS=Vigna radiata var. radiata PE=1 SV=1 | Back alignment and function description |
|---|
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/487 (72%), Positives = 414/487 (85%), Gaps = 1/487 (0%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GAKRLV VGLGDDDQ IEDDFSAW+E +W ELD LLRD+DD TVSTPYTAAI EYRVV
Sbjct: 205 GAKRLVAVGLGDDDQSIEDDFSAWKESLWSELDQLLRDEDDANTVSTPYTAAILEYRVVI 264
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
+D AS + ANG+ +D HPCR NVAV+KELH P SDRSC HLEFDI+GT +T
Sbjct: 265 HDPTAASTYDNHSTVANGNTEFDIHHPCRVNVAVQKELHKPESDRSCIHLEFDISGTSIT 324
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
Y+TGDHVGVY EN +ETVEE LLG + D +FSLHTDK+DGT LG S LPP PCSLR
Sbjct: 325 YDTGDHVGVYAENCNETVEETGKLLGQNLDLFFSLHTDKDDGTSLGGSLLPPFPGPCSLR 384
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
TAL +YADLL+ P+K+ALLALA HAS+P++ +RL+ L+SP GKDEY++W+V SQRSL+EV
Sbjct: 385 TALARYADLLNPPRKAALLALATHASEPSD-ERLKFLSSPQGKDEYSKWVVGSQRSLVEV 443
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
M+EFPSAKPPLGVFFAAI PRLQPRYYSISSSPR AP R+HVTCALVY TPTGR+HKG+
Sbjct: 444 MAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRFAPQRVHVTCALVYGPTPTGRIHKGV 503
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 382
CSTWMKN++P EKS DCS APIF+R SNFKLP D +PIIM+GPGTGLAPFRGFLQER+A
Sbjct: 504 CSTWMKNAIPSEKSQDCSSAPIFIRPSNFKLPVDHSIPIIMVGPGTGLAPFRGFLQERYA 563
Query: 383 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 442
L+E G +LGP+LLFFGCRNR+MD+IYEDEL +FV+ G+LS+LIVAFSREG KEYVQHKM
Sbjct: 564 LKEDGVQLGPALLFFGCRNRQMDFIYEDELKSFVEQGSLSELIVAFSREGAEKEYVQHKM 623
Query: 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502
M+K++ +W+++S+G YLYVCGDAK MARDVHRTLH+IVQEQ ++DS+KAE++VK LQM G
Sbjct: 624 MDKAAHLWSLISQGGYLYVCGDAKGMARDVHRTLHSIVQEQENVDSTKAEAIVKKLQMDG 683
Query: 503 RYLRDVW 509
RYLRDVW
Sbjct: 684 RYLRDVW 690
|
This enzyme is required for electron transfer from NADP to cytochrome P450. Vigna radiata var. radiata (taxid: 3916) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q9SB48|NCPR1_ARATH NADPH--cytochrome P450 reductase 1 OS=Arabidopsis thaliana GN=ATR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/488 (70%), Positives = 404/488 (82%), Gaps = 3/488 (0%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GAKRL+ VGLGDDDQ IEDDF+AW+E +W ELD LL+D+DD +V+TPYTA I EYRVV
Sbjct: 207 GAKRLIEVGLGDDDQSIEDDFNAWKESLWSELDKLLKDEDD-KSVATPYTAVIPEYRVVT 265
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
+D + ANG+ D HPCR +VAV+KELHT SDRSC HLEFDI+ TG+T
Sbjct: 266 HDPRFTTQKSMESNVANGNTTIDIHHPCRVDVAVQKELHTHESDRSCIHLEFDISRTGIT 325
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSL 201
YETGDHVGVY EN E VEEA LLG S D FS+H DKEDG+PL +S +PP FP PC+L
Sbjct: 326 YETGDHVGVYAENHVEIVEEAGKLLGHSLDLVFSIHADKEDGSPL-ESAVPPPFPGPCTL 384
Query: 202 RTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 261
T L +YADLL+ P+KSAL+ALAA+A++P+EA++L+HL SP GKDEY+QWIVASQRSLLE
Sbjct: 385 GTGLARYADLLNPPRKSALVALAAYATEPSEAEKLKHLTSPDGKDEYSQWIVASQRSLLE 444
Query: 262 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKG 321
VM+ FPSAKPPLGVFFAAI PRLQPRYYSISSSPR+APSR+HVT ALVY TPTGR+HKG
Sbjct: 445 VMAAFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRLAPSRVHVTSALVYGPTPTGRIHKG 504
Query: 322 LCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERF 381
+CSTWMKN++P EKS++CS APIF+R SNFKLP++ PI+M+GPGTGLAPFRGFLQER
Sbjct: 505 VCSTWMKNAVPAEKSHECSGAPIFIRASNFKLPSNPSTPIVMVGPGTGLAPFRGFLQERM 564
Query: 382 ALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 441
AL+E G ELG SLLFFGCRNR+MD+IYEDELNNFV G +S+LI+AFSREG KEYVQHK
Sbjct: 565 ALKEDGEELGSSLLFFGCRNRQMDFIYEDELNNFVDQGVISELIMAFSREGAQKEYVQHK 624
Query: 442 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMT 501
MMEK++ +W+++ E YLYVCGDAK MARDVHRTLHTIVQEQ + SS+AE++VK LQ
Sbjct: 625 MMEKAAQVWDLIKEEGYLYVCGDAKGMARDVHRTLHTIVQEQEGVSSSEAEAIVKKLQTE 684
Query: 502 GRYLRDVW 509
GRYLRDVW
Sbjct: 685 GRYLRDVW 692
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Reduces a variety of substrates in vitro, such as cytochrome c, feericyanide and dichloroindophenol. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q3SYT8|NCPR_BOVIN NADPH--cytochrome P450 reductase OS=Bos taurus GN=POR PE=2 SV=3 | Back alignment and function description |
|---|
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/498 (40%), Positives = 305/498 (61%), Gaps = 27/498 (5%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + +T ++I +Y ++
Sbjct: 196 GAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHF------GVEATGEESSIRQYELMV 249
Query: 83 Y---DNADASVGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+ D A GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 250 HTDMDMAKVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTTNRKLNQ-GTERHLMHLELD 306
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 307 ISDSKIRYESGDHVAVYPANDSALVNQLGEILGADLDIIMSLNNLDEE------SNKKHP 360
Query: 196 FP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--KDEYAQWI 252
FP P S RTALT Y D+ + P+ + L LA +AS+PTE ++LR +AS +G K+ Y +W+
Sbjct: 361 FPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSSGEGKELYLRWV 420
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEK 312
+ ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ V +
Sbjct: 421 LEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYE 479
Query: 313 TPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAP 372
T TGR++KG+ ++W++ P ++ + P++VR+S F+LP A P+IM+GPGTG+AP
Sbjct: 480 TKTGRINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPVIMVGPGTGVAP 539
Query: 373 FRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 432
F GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE
Sbjct: 540 FIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDGALTQLNVAFSREQ 599
Query: 433 PTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 491
P K YVQH + + +W ++ E GA++YVCGDA++MARDV T + IV EQG+++ ++A
Sbjct: 600 PQKVYVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVAEQGAMEHAQA 659
Query: 492 ESMVKNLQMTGRYLRDVW 509
VK L GRY DVW
Sbjct: 660 VDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P04175|NCPR_PIG NADPH--cytochrome P450 reductase OS=Sus scrofa GN=POR PE=1 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/498 (40%), Positives = 302/498 (60%), Gaps = 27/498 (5%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + +T ++I +Y +V
Sbjct: 196 GAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHF------GVEATGEESSIRQYELVV 249
Query: 83 YDNADASV---GE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+ + D +V GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 250 HTDMDTAVVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTTNRKLNQ-GTERHLMHLELD 306
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 307 ISDSKIRYESGDHVAVYPANDSALVNQLGEILGTDLDIVMSLNNLDEE------SNKRHP 360
Query: 196 FP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--KDEYAQWI 252
FP P + RTALT Y D+ + P+ + L LA +AS+P+E ++LR +AS +G K+ Y W+
Sbjct: 361 FPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEQLRKMASSSGEGKELYLSWV 420
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEK 312
V ++R +L ++ ++PS +PP+ +PRLQ RYYSI+SS +V P+ +H+ +V +
Sbjct: 421 VEARRHILAILQDYPSLRPPID-HLCERLPRLQARYYSIASSSKVHPNSVHICAVVVEYE 479
Query: 313 TPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAP 372
T +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP A P+IM+GPGTG+AP
Sbjct: 480 TKSGRVNKGVATSWLRAKEPAGENGRRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAP 539
Query: 373 FRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 432
F GF+QER LQE G E+G +LL++GCR DY+Y +EL F GAL++L VAFSRE
Sbjct: 540 FIGFIQERAWLQEQGKEVGETLLYYGCRRSDEDYLYREELAQFHAKGALTRLSVAFSREQ 599
Query: 433 PTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 491
P K YVQH + +W ++ + GA++Y+CGDA++MARDV T IV EQG ++ ++A
Sbjct: 600 PQKVYVQHLLKRDKEHLWKLIHDGGAHIYICGDARNMARDVQNTFCDIVAEQGPMEHAQA 659
Query: 492 ESMVKNLQMTGRYLRDVW 509
VK L GRY DVW
Sbjct: 660 VDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P16435|NCPR_HUMAN NADPH--cytochrome P450 reductase OS=Homo sapiens GN=POR PE=1 SV=2 | Back alignment and function description |
|---|
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/497 (39%), Positives = 301/497 (60%), Gaps = 26/497 (5%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + +T ++I +Y +V
Sbjct: 196 GAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHF------GVEATGEESSIRQYELVV 249
Query: 83 YDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+ + DA+ +GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 250 HTDIDAAKVYMGEMGRLKSYENQK--PPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELD 306
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 307 ISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHP 360
Query: 196 FP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--KDEYAQWI 252
FP P S RTALT Y D+ + P+ + L LA +AS+P+E + LR +AS +G K+ Y W+
Sbjct: 361 FPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWV 420
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEK 312
V ++R +L ++ + PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ +V +
Sbjct: 421 VEARRHILAILQDCPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYE 479
Query: 313 TPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAP 372
T GR++KG+ + W++ P ++ + P+FVR+S F+LP A P+IM+GPGTG+AP
Sbjct: 480 TKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAP 539
Query: 373 FRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 432
F GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE
Sbjct: 540 FIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQ 599
Query: 433 PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAE 492
K YVQH + + +W ++ GA++YVCGDA++MARDV T + IV E G+++ ++A
Sbjct: 600 SHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAV 659
Query: 493 SMVKNLQMTGRYLRDVW 509
+K L GRY DVW
Sbjct: 660 DYIKKLMTKGRYSLDVW 676
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P00389|NCPR_RABIT NADPH--cytochrome P450 reductase OS=Oryctolagus cuniculus GN=POR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/496 (39%), Positives = 297/496 (59%), Gaps = 23/496 (4%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +G+GDDD +E+DF WRE WP + +T ++I +Y +V
Sbjct: 197 GAQRIFELGMGDDDANLEEDFITWREQFWPAVCEHF------GVEATGEESSIRQYELVL 250
Query: 83 YDNAD-ASVGEKSWGN----ANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 137
+ + D A V + G N +DA++P + V ++L+ ++R HLE DI+
Sbjct: 251 HTDIDVAKVYQGEMGRLKSYENQKPPFDAKNPFLATVTTNRKLNQ-GTERHLMHLELDIS 309
Query: 138 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 197
+ + YE+GDHV VY N S V + +LG D SL+ E+ S FP
Sbjct: 310 DSKIRYESGDHVAVYPANDSALVNQLGEILGADLDVVMSLNNLDEE------SNKKHPFP 363
Query: 198 -PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--KDEYAQWIVA 254
P S RTALT Y D+ + P+ + L LA +A+DP E ++LR +AS +G K+ Y W+V
Sbjct: 364 CPTSYRTALTYYLDITNPPRTNVLYELAQYAADPAEQEQLRKMASSSGEGKELYLSWVVE 423
Query: 255 SQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTP 314
++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ V +T
Sbjct: 424 ARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYETK 482
Query: 315 TGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFR 374
GR++KG+ ++W++ P ++ + P+FVR+S F+LP A P+IM+GPGTG+APF
Sbjct: 483 AGRLNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFI 542
Query: 375 GFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT 434
GF+QER L++ G E+G +LL++GCR DY+Y +EL F + G LSQL VAFSRE
Sbjct: 543 GFIQERAWLRQQGKEVGETLLYYGCRRAAEDYLYREELAGFQKDGTLSQLNVAFSREQAQ 602
Query: 435 KEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAES 493
K YVQH + +W ++ E GA++YVCGDA++MARDV T + IV E G+++ ++A
Sbjct: 603 KVYVQHLLRRDKEHLWRLIHEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVD 662
Query: 494 MVKNLQMTGRYLRDVW 509
VK L GRY DVW
Sbjct: 663 YVKKLMTKGRYSLDVW 678
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P00388|NCPR_RAT NADPH--cytochrome P450 reductase OS=Rattus norvegicus GN=Por PE=1 SV=3 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/498 (39%), Positives = 299/498 (60%), Gaps = 27/498 (5%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + +T ++I +Y +V
Sbjct: 196 GAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFF------GVEATGEESSIRQYELVV 249
Query: 83 YDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+++ D + GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 250 HEDMDVAKVYTGEMGRLKSYENQK--PPFDAKNPFLAAVTANRKLNQ-GTERHLMHLELD 306
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 307 ISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEE------SNKKHP 360
Query: 196 FP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--KDEYAQWI 252
FP P + RTALT Y D+ + P+ + L LA +AS+P+E + L +AS +G K+ Y W+
Sbjct: 361 FPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWV 420
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEK 312
V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ V +
Sbjct: 421 VEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYE 479
Query: 313 TPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAP 372
+GRV+KG+ ++W++ P ++ + P+FVR+S F+LP + P+IM+GPGTG+AP
Sbjct: 480 AKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAP 539
Query: 373 FRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 432
F GF+QER L+E G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE
Sbjct: 540 FMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQ 599
Query: 433 PTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 491
K YVQH + +W ++ E GA++YVCGDA++MA+DV T + IV E G ++ ++A
Sbjct: 600 AHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQA 659
Query: 492 ESMVKNLQMTGRYLRDVW 509
VK L GRY DVW
Sbjct: 660 VDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
| >sp|P37040|NCPR_MOUSE NADPH--cytochrome P450 reductase OS=Mus musculus GN=Por PE=1 SV=2 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/498 (39%), Positives = 298/498 (59%), Gaps = 27/498 (5%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + +T ++I +Y +V
Sbjct: 196 GAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFF------GVEATGEESSIRQYELVV 249
Query: 83 YDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+++ D + GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 250 HEDMDTAKVYTGEMGRLKSYENQK--PPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELD 306
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 307 ISDSKIRYESGDHVAVYPANDSTLVNQIGEILGADLDVIMSLNNLDEE------SNKKHP 360
Query: 196 FP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--KDEYAQWI 252
FP P + RTALT Y D+ + P+ + L LA +AS+P+E + L +AS +G K+ Y W+
Sbjct: 361 FPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWV 420
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEK 312
V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ V +
Sbjct: 421 VEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYE 479
Query: 313 TPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAP 372
+GRV+KG+ ++W++ P ++ + P+FVR+S F+LP P+IM+GPGTG+AP
Sbjct: 480 AKSGRVNKGVATSWLRTKEPAGENGRRALVPMFVRKSQFRLPFKPTTPVIMVGPGTGVAP 539
Query: 373 FRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 432
F GF+QER L+E G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE
Sbjct: 540 FMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQ 599
Query: 433 PTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 491
K YVQH + +W ++ E GA++YVCGDA++MA+DV T + IV E G ++ ++A
Sbjct: 600 AHKVYVQHLLKRDKEHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQA 659
Query: 492 ESMVKNLQMTGRYLRDVW 509
VK L GRY DVW
Sbjct: 660 VDYVKKLMTKGRYSLDVW 677
|
This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 6 EC: . EC: 2 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 509 | ||||||
| 359485011 | 705 | PREDICTED: NADPH--cytochrome P450 reduct | 0.956 | 0.690 | 0.839 | 0.0 | |
| 224551852 | 710 | NADPH:cytochrome P450 reductase [Gossypi | 0.964 | 0.691 | 0.861 | 0.0 | |
| 449461207 | 708 | PREDICTED: NADPH--cytochrome P450 reduct | 0.956 | 0.687 | 0.835 | 0.0 | |
| 297735398 | 660 | unnamed protein product [Vitis vinifera] | 0.956 | 0.737 | 0.839 | 0.0 | |
| 449522700 | 708 | PREDICTED: NADPH--cytochrome P450 reduct | 0.956 | 0.687 | 0.833 | 0.0 | |
| 197209812 | 706 | cytochrome P450 reductase [Lotus japonic | 0.954 | 0.688 | 0.837 | 0.0 | |
| 6503253 | 704 | putative NADPH-cytochrome P450 reductase | 0.954 | 0.690 | 0.825 | 0.0 | |
| 13183566 | 712 | NADPH-cytochrome P450 oxydoreductase iso | 0.956 | 0.683 | 0.819 | 0.0 | |
| 224142245 | 712 | predicted protein [Populus trichocarpa] | 0.956 | 0.683 | 0.809 | 0.0 | |
| 449457161 | 708 | PREDICTED: NADPH--cytochrome P450 reduct | 0.966 | 0.694 | 0.821 | 0.0 |
| >gi|359485011|ref|XP_002270732.2| PREDICTED: NADPH--cytochrome P450 reductase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/487 (83%), Positives = 457/487 (93%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
G KR+VPVGLGDDDQCIEDDF+AWREL+WPELD LLRD+DD TTVSTPYTAA+ EYRVVF
Sbjct: 219 GGKRIVPVGLGDDDQCIEDDFAAWRELLWPELDQLLRDEDDATTVSTPYTAAVLEYRVVF 278
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
+D AS+ +KSWG+ANGH V+DAQHPCR+NVAVRKELHTP+SDRSCTHLEFDI+GTGLT
Sbjct: 279 HDPEGASLQDKSWGSANGHTVHDAQHPCRANVAVRKELHTPASDRSCTHLEFDISGTGLT 338
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
YETGDHVGVYCENL ETVEEA LLG SPD YFS+HT++EDGTPL S+L P FPPC+LR
Sbjct: 339 YETGDHVGVYCENLPETVEEAERLLGFSPDVYFSIHTEREDGTPLSGSSLSPPFPPCTLR 398
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
TALT+YAD+LSSPKKSAL+ALAAHASDP+EADRL++LASP+GKDEYAQW+VASQRSLLE+
Sbjct: 399 TALTRYADVLSSPKKSALVALAAHASDPSEADRLKYLASPSGKDEYAQWVVASQRSLLEI 458
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
M+EFPSAKPPLGVFFAA+ PRLQPRYYSISSSP++ PSRIHVTCALV +K PTGR+HKG+
Sbjct: 459 MAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPKMVPSRIHVTCALVCDKMPTGRIHKGI 518
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 382
CSTWMK ++P+E+S DCSWAPIFVRQSNFKLPAD VPIIMIGPGTGLAPFRGFLQERFA
Sbjct: 519 CSTWMKYAVPLEESQDCSWAPIFVRQSNFKLPADTSVPIIMIGPGTGLAPFRGFLQERFA 578
Query: 383 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 442
L+EAGAELG S+LFFGCRNRKMDYIYEDELN FV+SGALS+LIVAFSREGPTKEYVQHKM
Sbjct: 579 LKEAGAELGSSILFFGCRNRKMDYIYEDELNGFVESGALSELIVAFSREGPTKEYVQHKM 638
Query: 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502
MEK+SDIWN++S+G Y+YVCGDAK MARDVHRTLHTI+QEQGSLDSSKAESMVKNLQMTG
Sbjct: 639 MEKASDIWNVISQGGYIYVCGDAKGMARDVHRTLHTILQEQGSLDSSKAESMVKNLQMTG 698
Query: 503 RYLRDVW 509
RYLRDVW
Sbjct: 699 RYLRDVW 705
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224551852|gb|ACN54324.1| NADPH:cytochrome P450 reductase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/492 (86%), Positives = 460/492 (93%), Gaps = 1/492 (0%)
Query: 18 LLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISE 77
LL GAKR+VP+GLGDDDQCIEDDF+AWRELVWPELD LLRD+DD TVSTPYTAA+ E
Sbjct: 220 LLTEQGAKRIVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDD-ATVSTPYTAAVLE 278
Query: 78 YRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 137
YRVVFYD ADA + +K+W NANGHA YDAQHPCRSNVAVRKELH P SDRSCTHLEFDIA
Sbjct: 279 YRVVFYDPADAPLEDKNWSNANGHATYDAQHPCRSNVAVRKELHAPESDRSCTHLEFDIA 338
Query: 138 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 197
GTGL+YETGDHVGVYCENL E V+EALSLLGLSPDTYFS+HTDKEDGTPLG S+LP +FP
Sbjct: 339 GTGLSYETGDHVGVYCENLDEVVDEALSLLGLSPDTYFSVHTDKEDGTPLGGSSLPSSFP 398
Query: 198 PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQR 257
PC+LRTAL +YADLLSSPKK+ALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVA+QR
Sbjct: 399 PCTLRTALARYADLLSSPKKAALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVANQR 458
Query: 258 SLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR 317
SLLEVM+EFPSAKPPLGVFFAA+ PRLQPRYYSISSSPR+APSRIHVTCALVYEKTPTGR
Sbjct: 459 SLLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRLAPSRIHVTCALVYEKTPTGR 518
Query: 318 VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFL 377
+HKG+CSTWMKN++ KS+DC WAPIFVRQSNFKLP+D KVPIIMIGPGTGLAPFRGFL
Sbjct: 519 IHKGVCSTWMKNAVSSGKSDDCGWAPIFVRQSNFKLPSDTKVPIIMIGPGTGLAPFRGFL 578
Query: 378 QERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEY 437
QER AL+EAGAELGPS+LFFGCRNRKMD+IYEDELNNFV SGALS+L+VAFSREGPTKEY
Sbjct: 579 QERLALKEAGAELGPSVLFFGCRNRKMDFIYEDELNNFVNSGALSELVVAFSREGPTKEY 638
Query: 438 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 497
VQHKMMEK+ DIW+M+S+G YLYVCGDAK MARDVHR LHTI QEQGSLDSSKAESMVKN
Sbjct: 639 VQHKMMEKAKDIWDMISQGGYLYVCGDAKGMARDVHRALHTIFQEQGSLDSSKAESMVKN 698
Query: 498 LQMTGRYLRDVW 509
LQM+GRYLRDVW
Sbjct: 699 LQMSGRYLRDVW 710
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461207|ref|XP_004148333.1| PREDICTED: NADPH--cytochrome P450 reductase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/487 (83%), Positives = 454/487 (93%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
G KRLVPVGLGDDDQCIEDDFS WRE +WPELD LLRD+DD T+VSTPYTAA+ EYRVVF
Sbjct: 222 GGKRLVPVGLGDDDQCIEDDFSVWREQLWPELDKLLRDEDDSTSVSTPYTAAVLEYRVVF 281
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
YD AD S G+K W ANGHAVYDAQHPCR+NVAVRKELHT +SDRSC HLEFDI+GTGLT
Sbjct: 282 YDAADVSGGDKRWAFANGHAVYDAQHPCRANVAVRKELHTSASDRSCIHLEFDISGTGLT 341
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
YETGDHVGV+CENL E VEEA+ L+G+SP+TYFS+HTDKEDGTPL S+LPP F PC+LR
Sbjct: 342 YETGDHVGVFCENLDEVVEEAIRLIGMSPETYFSIHTDKEDGTPLSGSSLPPPFAPCTLR 401
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
TALT+YADLLSSPKKSAL+ALAAHASDP EADRLRHL+SPAGKDEY+QWIVASQRSLLEV
Sbjct: 402 TALTQYADLLSSPKKSALVALAAHASDPAEADRLRHLSSPAGKDEYSQWIVASQRSLLEV 461
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
M EFPSA+PPLGVFFAA+ PRLQPRYYSISSSPR+APSRIHVTCALVY+KTPTGR+HKG+
Sbjct: 462 MVEFPSARPPLGVFFAAVAPRLQPRYYSISSSPRMAPSRIHVTCALVYDKTPTGRIHKGV 521
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 382
CSTWMKN++ +E+S CSWAPI+VRQSNFKLP D+K+PIIMIGPGTGLAPFRGFLQER A
Sbjct: 522 CSTWMKNAISLEESQACSWAPIYVRQSNFKLPTDSKLPIIMIGPGTGLAPFRGFLQERLA 581
Query: 383 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 442
L+E+G ELG S+LFFGCRNRKMDYIYEDELNNFV++GALS+LI+AFSREGP+KEYVQHKM
Sbjct: 582 LKESGVELGHSILFFGCRNRKMDYIYEDELNNFVETGALSELILAFSREGPSKEYVQHKM 641
Query: 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502
+EK+SDIWN+LS+GAY+YVCGDAK MARDVHRTLH IVQEQGSLDSSKAESMVKNLQM+G
Sbjct: 642 VEKASDIWNLLSQGAYIYVCGDAKGMARDVHRTLHNIVQEQGSLDSSKAESMVKNLQMSG 701
Query: 503 RYLRDVW 509
RYLRDVW
Sbjct: 702 RYLRDVW 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735398|emb|CBI17838.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/487 (83%), Positives = 457/487 (93%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
G KR+VPVGLGDDDQCIEDDF+AWREL+WPELD LLRD+DD TTVSTPYTAA+ EYRVVF
Sbjct: 174 GGKRIVPVGLGDDDQCIEDDFAAWRELLWPELDQLLRDEDDATTVSTPYTAAVLEYRVVF 233
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
+D AS+ +KSWG+ANGH V+DAQHPCR+NVAVRKELHTP+SDRSCTHLEFDI+GTGLT
Sbjct: 234 HDPEGASLQDKSWGSANGHTVHDAQHPCRANVAVRKELHTPASDRSCTHLEFDISGTGLT 293
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
YETGDHVGVYCENL ETVEEA LLG SPD YFS+HT++EDGTPL S+L P FPPC+LR
Sbjct: 294 YETGDHVGVYCENLPETVEEAERLLGFSPDVYFSIHTEREDGTPLSGSSLSPPFPPCTLR 353
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
TALT+YAD+LSSPKKSAL+ALAAHASDP+EADRL++LASP+GKDEYAQW+VASQRSLLE+
Sbjct: 354 TALTRYADVLSSPKKSALVALAAHASDPSEADRLKYLASPSGKDEYAQWVVASQRSLLEI 413
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
M+EFPSAKPPLGVFFAA+ PRLQPRYYSISSSP++ PSRIHVTCALV +K PTGR+HKG+
Sbjct: 414 MAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPKMVPSRIHVTCALVCDKMPTGRIHKGI 473
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 382
CSTWMK ++P+E+S DCSWAPIFVRQSNFKLPAD VPIIMIGPGTGLAPFRGFLQERFA
Sbjct: 474 CSTWMKYAVPLEESQDCSWAPIFVRQSNFKLPADTSVPIIMIGPGTGLAPFRGFLQERFA 533
Query: 383 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 442
L+EAGAELG S+LFFGCRNRKMDYIYEDELN FV+SGALS+LIVAFSREGPTKEYVQHKM
Sbjct: 534 LKEAGAELGSSILFFGCRNRKMDYIYEDELNGFVESGALSELIVAFSREGPTKEYVQHKM 593
Query: 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502
MEK+SDIWN++S+G Y+YVCGDAK MARDVHRTLHTI+QEQGSLDSSKAESMVKNLQMTG
Sbjct: 594 MEKASDIWNVISQGGYIYVCGDAKGMARDVHRTLHTILQEQGSLDSSKAESMVKNLQMTG 653
Query: 503 RYLRDVW 509
RYLRDVW
Sbjct: 654 RYLRDVW 660
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522700|ref|XP_004168364.1| PREDICTED: NADPH--cytochrome P450 reductase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/487 (83%), Positives = 454/487 (93%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
G KRLVPVGLGDDDQCIEDDFS WRE +WPELD LLRD+DD T+VSTPYTAA+ EYRVVF
Sbjct: 222 GGKRLVPVGLGDDDQCIEDDFSVWREQLWPELDKLLRDEDDSTSVSTPYTAAVLEYRVVF 281
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
YD AD S G+K W ANGHAVYDAQHPCR+NVAVRKELHT +SDRSC HLEFDI+GTGLT
Sbjct: 282 YDAADVSGGDKRWAFANGHAVYDAQHPCRANVAVRKELHTSASDRSCIHLEFDISGTGLT 341
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
YETGDHVGV+CENL E VEEA+ L+G+SP+TYFS+HTDKEDGTPL S+LPP F PC+LR
Sbjct: 342 YETGDHVGVFCENLDEVVEEAIRLIGMSPETYFSIHTDKEDGTPLSGSSLPPPFAPCTLR 401
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
TALT+YADLLSSPKKSAL+ALAAHASDP EADRLRHL+SPAGKDEY+QWIVASQRSLLEV
Sbjct: 402 TALTQYADLLSSPKKSALVALAAHASDPAEADRLRHLSSPAGKDEYSQWIVASQRSLLEV 461
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
M EFPSA+PPLGVFFAA+ PRLQPRYYSISSSPR+APSRIHVTCALVY+KTPTGR+HKG+
Sbjct: 462 MVEFPSARPPLGVFFAAVAPRLQPRYYSISSSPRMAPSRIHVTCALVYDKTPTGRIHKGV 521
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 382
CSTWMKN++ +E+S CSWAPI+VRQSNFKLP D+K+PIIMIGPGTGLAPFRGFLQER A
Sbjct: 522 CSTWMKNAISLEESQACSWAPIYVRQSNFKLPTDSKLPIIMIGPGTGLAPFRGFLQERLA 581
Query: 383 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 442
++E+G ELG S+LFFGCRNRKMDYIYEDELNNFV++GALS+LI+AFSREGP+KEYVQHKM
Sbjct: 582 MKESGVELGHSILFFGCRNRKMDYIYEDELNNFVETGALSELILAFSREGPSKEYVQHKM 641
Query: 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502
+EK+SDIWN+LS+GAY+YVCGDAK MARDVHRTLH IVQEQGSLDSSKAESMVKNLQM+G
Sbjct: 642 VEKASDIWNLLSQGAYIYVCGDAKGMARDVHRTLHNIVQEQGSLDSSKAESMVKNLQMSG 701
Query: 503 RYLRDVW 509
RYLRDVW
Sbjct: 702 RYLRDVW 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|197209812|dbj|BAG68945.1| cytochrome P450 reductase [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/487 (83%), Positives = 450/487 (92%), Gaps = 1/487 (0%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
G KRLV VGLGDDDQCIEDDF+AW+E +WP LD LLR DDD TTVSTPYTAA+ EYRVV
Sbjct: 221 GGKRLVKVGLGDDDQCIEDDFTAWKEELWPALDELLRGDDD-TTVSTPYTAAVLEYRVVI 279
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
+D DASV EK W N NGHA+ DAQHP RSNVAVRKELHTP SDRSCTHLEFDI+GTG+
Sbjct: 280 HDPLDASVDEKKWHNVNGHAIVDAQHPVRSNVAVRKELHTPVSDRSCTHLEFDISGTGVA 339
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
YETGDHVGVYCENLSETVEEA+ LLGLSPDTYFS+HTD EDG PL S+LPPTFPPC+LR
Sbjct: 340 YETGDHVGVYCENLSETVEEAVRLLGLSPDTYFSVHTDDEDGKPLSGSSLPPTFPPCTLR 399
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
TA+ +YAD+LSSPKKS LLALAAHAS+P+EADRLRHLASPAGKDEY++W++ASQRSLLEV
Sbjct: 400 TAIARYADVLSSPKKSVLLALAAHASNPSEADRLRHLASPAGKDEYSEWVIASQRSLLEV 459
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
M+EFPSAKPP+GVFFAAI PRLQPR+YSISSSPR+APSRIHVTCALV +K PTGR+H+G+
Sbjct: 460 MAEFPSAKPPIGVFFAAIAPRLQPRFYSISSSPRMAPSRIHVTCALVNDKMPTGRIHRGV 519
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 382
CSTWMKNS+P+EKS DCSWAPIFVRQSNFKLPAD KVPIIMIGPGTGLAPFRGFLQER A
Sbjct: 520 CSTWMKNSVPLEKSQDCSWAPIFVRQSNFKLPADNKVPIIMIGPGTGLAPFRGFLQERLA 579
Query: 383 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 442
L+E GAELGPS+LFFGCRNR+MDYIYEDELN+FV SGALS+LIVAFSREGPTKEYVQHKM
Sbjct: 580 LKEDGAELGPSVLFFGCRNRQMDYIYEDELNHFVNSGALSELIVAFSREGPTKEYVQHKM 639
Query: 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502
MEK+SDIWNM+S+GAY+YVCGDAK MARDVHRTLHTI+QEQGSLDSSKAE MVKNLQ+ G
Sbjct: 640 MEKASDIWNMISQGAYIYVCGDAKGMARDVHRTLHTILQEQGSLDSSKAEGMVKNLQLNG 699
Query: 503 RYLRDVW 509
RYLRDVW
Sbjct: 700 RYLRDVW 706
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6503253|gb|AAC09468.2| putative NADPH-cytochrome P450 reductase [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/487 (82%), Positives = 452/487 (92%), Gaps = 1/487 (0%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
G KRLVPVGLGDDDQCIEDDF+AW+E +WP LD LLRD+DD T V+TPYTAA+SEYRVV
Sbjct: 219 GGKRLVPVGLGDDDQCIEDDFTAWKEELWPALDQLLRDEDD-TPVATPYTAAVSEYRVVI 277
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
+D DA+V EK N NGHAV DAQHP R+NVAVR+ELHTP+SDRSCTHLEFDI+GTG+
Sbjct: 278 HDPLDATVDEKKRHNVNGHAVVDAQHPVRANVAVRRELHTPASDRSCTHLEFDISGTGVV 337
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
YETGDHVGVYCENLS+TVEEA +LGLSPDTY S+HTD E+G PLG S+LPP FPPC+LR
Sbjct: 338 YETGDHVGVYCENLSDTVEEAERILGLSPDTYLSIHTDDEEGKPLGGSSLPPPFPPCTLR 397
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
TALTKYADLLSSPKKSAL+ALAAHASDP+EADRLRHLASPAGKDEYA+W+++SQRSLLEV
Sbjct: 398 TALTKYADLLSSPKKSALVALAAHASDPSEADRLRHLASPAGKDEYAEWVISSQRSLLEV 457
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
M+EF SAKPP+GVFFAA+ PRLQPRYYSISSSPR+APSRIHVTCALV++K PTGR+HKG+
Sbjct: 458 MAEFSSAKPPIGVFFAAVAPRLQPRYYSISSSPRMAPSRIHVTCALVHDKMPTGRIHKGV 517
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 382
CSTWMKNS+P+EK+ DCSWAPIFVRQSNF+LPAD KVP+IMIGPGTGLAPFRGFLQER A
Sbjct: 518 CSTWMKNSVPLEKNQDCSWAPIFVRQSNFRLPADNKVPVIMIGPGTGLAPFRGFLQERLA 577
Query: 383 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 442
L+E GAELGPS+LFFGCRNR++DYIYEDELN+FV GALS+LIVAFSR+GPTKEYVQHKM
Sbjct: 578 LKEDGAELGPSVLFFGCRNRQVDYIYEDELNHFVNGGALSELIVAFSRDGPTKEYVQHKM 637
Query: 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502
MEK+SDIWNM+S+GAY+YVCGDAK MARDVHRTLHTI+QEQGSLDSSK ESMVKNLQMTG
Sbjct: 638 MEKASDIWNMISQGAYVYVCGDAKGMARDVHRTLHTILQEQGSLDSSKTESMVKNLQMTG 697
Query: 503 RYLRDVW 509
RYLRDVW
Sbjct: 698 RYLRDVW 704
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13183566|gb|AAK15261.1|AF302498_1 NADPH-cytochrome P450 oxydoreductase isoform 3 [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/487 (81%), Positives = 446/487 (91%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
G KRL PVGLGDDDQC+EDDF+AWREL+WPE+D LL D DDPT VSTPY A +SEYRVVF
Sbjct: 226 GGKRLAPVGLGDDDQCMEDDFAAWRELLWPEMDQLLLDGDDPTAVSTPYAATVSEYRVVF 285
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
+ DA + + +W NANGHAVYDAQHPCR+NVAVR+ELHTP+SDRSCTHLEF+I+GTGL
Sbjct: 286 HSPEDAPLEDDNWSNANGHAVYDAQHPCRANVAVRRELHTPASDRSCTHLEFEISGTGLA 345
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
Y TGDHVGVYCENLSETVEEAL LLGLSPDTYFS+H D EDGTPL LPP FPP +L+
Sbjct: 346 YGTGDHVGVYCENLSETVEEALQLLGLSPDTYFSIHNDNEDGTPLSGGALPPPFPPSTLK 405
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
TAL +YADLLS PKKSAL+ALAAHA+DPTEADRLRHLASPAGKDEYAQ +VA+QRSLLEV
Sbjct: 406 TALARYADLLSLPKKSALMALAAHATDPTEADRLRHLASPAGKDEYAQLLVANQRSLLEV 465
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
M+EFPSAKPPLGVFFA++ PRLQPRYYSISSSPR+APSRIHVTCALV EKT GR+HKG+
Sbjct: 466 MAEFPSAKPPLGVFFASVAPRLQPRYYSISSSPRMAPSRIHVTCALVLEKTLGGRIHKGV 525
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 382
CSTWMKN++P+EKS+DCSWAP+FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQER A
Sbjct: 526 CSTWMKNAVPLEKSHDCSWAPVFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERLA 585
Query: 383 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 442
L+EAG+ELG S+LFFGCRNRKMD+IYEDELNNFV+SGALS+L+VAFSREGPTKEYVQHKM
Sbjct: 586 LKEAGSELGSSVLFFGCRNRKMDFIYEDELNNFVESGALSELVVAFSREGPTKEYVQHKM 645
Query: 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502
M+K+SDIWNM+S+G YLYVCGDAK MA+DVHR LHTIVQEQGSLD+SK ES VK+LQM G
Sbjct: 646 MQKASDIWNMISQGGYLYVCGDAKGMAKDVHRALHTIVQEQGSLDNSKTESFVKSLQMNG 705
Query: 503 RYLRDVW 509
RYLRDVW
Sbjct: 706 RYLRDVW 712
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142245|ref|XP_002324469.1| predicted protein [Populus trichocarpa] gi|222865903|gb|EEF03034.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/487 (80%), Positives = 442/487 (90%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
G KRL VGLGDDDQC+EDDF+AWREL+WPE+D LL D DDPT VSTPY A +SEYRVV
Sbjct: 226 GGKRLAAVGLGDDDQCMEDDFAAWRELLWPEMDQLLLDGDDPTAVSTPYAATVSEYRVVV 285
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
+D DA + + +W NANGHAVYDAQHPCR+NVAVR+ELHTP+SDRSCTHLE +I+GTGL
Sbjct: 286 HDPEDAPLEDDNWSNANGHAVYDAQHPCRANVAVRRELHTPASDRSCTHLELEISGTGLA 345
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
Y TGDHVGVYCENLSETVEEAL LLGLSPDTYFS+H D DGTPL S LPP FPP +L+
Sbjct: 346 YGTGDHVGVYCENLSETVEEALQLLGLSPDTYFSIHNDNVDGTPLSGSALPPPFPPSTLK 405
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
TAL +YADLLS PKKSAL+ALAAHA+DPTEADRLRHLASPAGKDEYAQ +VA+QRSLLEV
Sbjct: 406 TALARYADLLSLPKKSALMALAAHATDPTEADRLRHLASPAGKDEYAQLLVANQRSLLEV 465
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
M+EFPSAKPPLGVFFA++ PRLQPRYYSISSSP +APSRIHVTCALV EKTP GR+HKG+
Sbjct: 466 MAEFPSAKPPLGVFFASVAPRLQPRYYSISSSPSMAPSRIHVTCALVLEKTPGGRIHKGV 525
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 382
CSTWMKN++P+EKS+DCSWAP+FVRQSNFKLP DAKVPIIMIGPGTGLAPFRGFLQER A
Sbjct: 526 CSTWMKNAVPLEKSHDCSWAPVFVRQSNFKLPEDAKVPIIMIGPGTGLAPFRGFLQERLA 585
Query: 383 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 442
L+EAG+ELG S+LFFGCRNRKMD+IYEDELNNFV+SGALS+L+VAFSREGPTKEYVQHKM
Sbjct: 586 LKEAGSELGSSVLFFGCRNRKMDFIYEDELNNFVESGALSELVVAFSREGPTKEYVQHKM 645
Query: 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502
M+K+SDIWNM+S+G YLYVCGDAK MA+DVHR LHTIVQEQGS D+S+ ES VK+LQM G
Sbjct: 646 MQKASDIWNMISQGGYLYVCGDAKGMAKDVHRALHTIVQEQGSFDNSRTESFVKSLQMNG 705
Query: 503 RYLRDVW 509
RYLRDVW
Sbjct: 706 RYLRDVW 712
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457161|ref|XP_004146317.1| PREDICTED: NADPH--cytochrome P450 reductase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/492 (82%), Positives = 456/492 (92%)
Query: 18 LLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISE 77
LL G KRLV VGLGDDDQCIEDDFSAWRE +WPELD LLRD+DD TV+TPYTAAISE
Sbjct: 217 LLETQGGKRLVKVGLGDDDQCIEDDFSAWRESLWPELDQLLRDEDDAATVTTPYTAAISE 276
Query: 78 YRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIA 137
YRVVF+D +D + +K+W NANGHAV+DAQHP RSNV VRKELHTP+SDRSCTHLEFDI+
Sbjct: 277 YRVVFHDPSDVTDDKKNWMNANGHAVHDAQHPFRSNVVVRKELHTPASDRSCTHLEFDIS 336
Query: 138 GTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP 197
+ L YETGDHVGVYCENL+ETV+EAL+LLGLSP+TYFS+HTD EDGT LG S+LPP FP
Sbjct: 337 ESALKYETGDHVGVYCENLTETVDEALNLLGLSPETYFSIHTDNEDGTQLGGSSLPPPFP 396
Query: 198 PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQR 257
C+LRTALT+YADLL+SPKKSALLALAAHAS+P EADRLR+LASPAGKDEY+Q +V SQ+
Sbjct: 397 SCTLRTALTRYADLLNSPKKSALLALAAHASNPIEADRLRYLASPAGKDEYSQSVVGSQK 456
Query: 258 SLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR 317
SLLEVM+EFPSAKPPLGVFFAA+ PRLQPR+YSISSSPR+APSRIHVTCALVY+K PTGR
Sbjct: 457 SLLEVMAEFPSAKPPLGVFFAAVAPRLQPRFYSISSSPRMAPSRIHVTCALVYDKMPTGR 516
Query: 318 VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFL 377
+HKG+CSTWMKNS+PMEK ++CSWAPIFVRQSNFKLP+D+KVPIIM+GPGTGLAPFRGFL
Sbjct: 517 IHKGICSTWMKNSVPMEKIHECSWAPIFVRQSNFKLPSDSKVPIIMVGPGTGLAPFRGFL 576
Query: 378 QERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEY 437
QER AL+E+G ELGPS+LFFGCRNR MDYIYEDELNNFV++GALS+L++AFSREGPTKEY
Sbjct: 577 QERLALKESGVELGPSILFFGCRNRAMDYIYEDELNNFVETGALSELVIAFSREGPTKEY 636
Query: 438 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 497
VQHKM EK+SDIWN++S+GAYLYVCGDAK MARDVHRTLHTIVQEQGSLDSSKAESMVKN
Sbjct: 637 VQHKMTEKASDIWNLISQGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKN 696
Query: 498 LQMTGRYLRDVW 509
LQ +GRYLRDVW
Sbjct: 697 LQTSGRYLRDVW 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 509 | ||||||
| TAIR|locus:2121894 | 692 | ATR1 "P450 reductase 1" [Arabi | 0.952 | 0.700 | 0.670 | 4.5e-178 | |
| UNIPROTKB|A5D9D3 | 680 | POR "NADPH--cytochrome P450 re | 0.923 | 0.691 | 0.390 | 1.7e-89 | |
| UNIPROTKB|Q3SYT8 | 678 | POR "NADPH--cytochrome P450 re | 0.923 | 0.693 | 0.390 | 1.7e-89 | |
| UNIPROTKB|F1P7R1 | 703 | POR "NADPH--cytochrome P450 re | 0.923 | 0.668 | 0.388 | 2.8e-89 | |
| UNIPROTKB|F1P2T2 | 679 | POR "NADPH--cytochrome P450 re | 0.921 | 0.690 | 0.390 | 9.6e-89 | |
| UNIPROTKB|P04175 | 678 | POR "NADPH--cytochrome P450 re | 0.923 | 0.693 | 0.390 | 2e-88 | |
| UNIPROTKB|P16435 | 677 | POR "NADPH--cytochrome P450 re | 0.923 | 0.694 | 0.385 | 3.2e-88 | |
| RGD|68335 | 678 | Por "P450 (cytochrome) oxidore | 0.923 | 0.693 | 0.378 | 7.7e-87 | |
| MGI|MGI:97744 | 678 | Por "P450 (cytochrome) oxidore | 0.923 | 0.693 | 0.378 | 9.9e-87 | |
| FB|FBgn0015623 | 679 | Cpr "Cytochrome P450 reductase | 0.927 | 0.695 | 0.390 | 4.3e-86 |
| TAIR|locus:2121894 ATR1 "P450 reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1729 (613.7 bits), Expect = 4.5e-178, P = 4.5e-178
Identities = 327/488 (67%), Positives = 383/488 (78%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GAKRL+ VGLGDDDQ IEDDF+AW+E +W ELD LL+D+DD + V+TPYTA I EYRVV
Sbjct: 207 GAKRLIEVGLGDDDQSIEDDFNAWKESLWSELDKLLKDEDDKS-VATPYTAVIPEYRVVT 265
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
+D + ANG+ D HPCR +VAV+KELHT SDRSC HLEFDI+ TG+T
Sbjct: 266 HDPRFTTQKSMESNVANGNTTIDIHHPCRVDVAVQKELHTHESDRSCIHLEFDISRTGIT 325
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSL 201
YETGDHVGVY EN E VEEA LLG S D FS+H DKEDG+PL +S +PP FP PC+L
Sbjct: 326 YETGDHVGVYAENHVEIVEEAGKLLGHSLDLVFSIHADKEDGSPL-ESAVPPPFPGPCTL 384
Query: 202 RTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAGKDEYAQWIVASQRSLLE 261
T L +Y +EA++L+HL SP GKDEY+QWIVASQRSLLE
Sbjct: 385 GTGLARYADLLNPPRKSALVALAAYATEPSEAEKLKHLTSPDGKDEYSQWIVASQRSLLE 444
Query: 262 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKG 321
VM+ FPSAKPPLGVFFAAI PRLQPRYYSISSSPR+APSR+HVT ALVY TPTGR+HKG
Sbjct: 445 VMAAFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRLAPSRVHVTSALVYGPTPTGRIHKG 504
Query: 322 LCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERF 381
+CSTWMKN++P EKS++CS APIF+R SNFKLP++ PI+M+GPGTGLAPFRGFLQER
Sbjct: 505 VCSTWMKNAVPAEKSHECSGAPIFIRASNFKLPSNPSTPIVMVGPGTGLAPFRGFLQERM 564
Query: 382 ALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 441
AL+E G ELG SLLFFGCRNR+MD+IYEDELNNFV G +S+LI+AFSREG KEYVQHK
Sbjct: 565 ALKEDGEELGSSLLFFGCRNRQMDFIYEDELNNFVDQGVISELIMAFSREGAQKEYVQHK 624
Query: 442 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMT 501
MMEK++ +W+++ E YLYVCGDAK MARDVHRTLHTIVQEQ + SS+AE++VK LQ
Sbjct: 625 MMEKAAQVWDLIKEEGYLYVCGDAKGMARDVHRTLHTIVQEQEGVSSSEAEAIVKKLQTE 684
Query: 502 GRYLRDVW 509
GRYLRDVW
Sbjct: 685 GRYLRDVW 692
|
|
| UNIPROTKB|A5D9D3 POR "NADPH--cytochrome P450 reductase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 195/499 (39%), Positives = 297/499 (59%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y ++
Sbjct: 198 GAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELMV 251
Query: 83 YDNAD-ASV--GE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+ + D A V GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 252 HTDMDMAKVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTTNRKLNQ-GTERHLMHLELD 308
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 309 ISDSKIRYESGDHVAVYPANDSALVNQLGEILGADLDIIMSLNNLDEE------SNKKHP 362
Query: 196 FP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYAQWI 252
FP P S RTALT Y TE ++LR +AS +G K+ Y +W+
Sbjct: 363 FPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSSGEGKELYLRWV 422
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE- 311
+ ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+ E
Sbjct: 423 LEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAVAVEY 480
Query: 312 KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLA 371
+T TGR++KG+ ++W++ P ++ + P++VR+S F+LP A P+IM+GPGTG+A
Sbjct: 481 ETKTGRINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPVIMVGPGTGVA 540
Query: 372 PFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 431
PF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE
Sbjct: 541 PFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDGALTQLNVAFSRE 600
Query: 432 GPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490
P K YVQH + + +W ++ EG A++YVCGDA++MARDV T + IV EQG+++ ++
Sbjct: 601 QPQKVYVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVAEQGAMEHAQ 660
Query: 491 AESMVKNLQMTGRYLRDVW 509
A VK L GRY DVW
Sbjct: 661 AVDYVKKLMTKGRYSLDVW 679
|
|
| UNIPROTKB|Q3SYT8 POR "NADPH--cytochrome P450 reductase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 195/499 (39%), Positives = 297/499 (59%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y ++
Sbjct: 196 GAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELMV 249
Query: 83 YDNAD-ASV--GE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+ + D A V GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 250 HTDMDMAKVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTTNRKLNQ-GTERHLMHLELD 306
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 307 ISDSKIRYESGDHVAVYPANDSALVNQLGEILGADLDIIMSLNNLDEE------SNKKHP 360
Query: 196 FP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYAQWI 252
FP P S RTALT Y TE ++LR +AS +G K+ Y +W+
Sbjct: 361 FPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSSGEGKELYLRWV 420
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE- 311
+ ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+ E
Sbjct: 421 LEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAVAVEY 478
Query: 312 KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLA 371
+T TGR++KG+ ++W++ P ++ + P++VR+S F+LP A P+IM+GPGTG+A
Sbjct: 479 ETKTGRINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPVIMVGPGTGVA 538
Query: 372 PFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 431
PF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE
Sbjct: 539 PFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAGFHKDGALTQLNVAFSRE 598
Query: 432 GPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490
P K YVQH + + +W ++ EG A++YVCGDA++MARDV T + IV EQG+++ ++
Sbjct: 599 QPQKVYVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVAEQGAMEHAQ 658
Query: 491 AESMVKNLQMTGRYLRDVW 509
A VK L GRY DVW
Sbjct: 659 AVDYVKKLMTKGRYSLDVW 677
|
|
| UNIPROTKB|F1P7R1 POR "NADPH--cytochrome P450 reductase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 194/499 (38%), Positives = 293/499 (58%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +G+GDDD +E+DF WRE WP + + +T ++I +Y +V
Sbjct: 221 GAQRIFELGMGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELVV 274
Query: 83 YDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+ + D + VGE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 275 HTDIDMAKVYVGEMGRLKSYENQK--PPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELD 331
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + L YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 332 ISDSKLRYESGDHVAVYPANDSALVNQLGEILGADLDVVMSLNNLDEE------SNKKHP 385
Query: 196 FP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYAQWI 252
FP P S RTALT Y TE + LR +AS +G K+ Y W+
Sbjct: 386 FPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPTEQEHLRKMASSSGEGKELYLSWV 445
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE- 311
V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+ E
Sbjct: 446 VEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAVAVEY 503
Query: 312 KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLA 371
+T +GR++KG+ ++W++ P ++ + P+FVR+S F+LP A P+IM+GPGTG+A
Sbjct: 504 QTRSGRINKGVATSWLRAKEPAGENGRRALVPMFVRKSQFRLPFKAATPVIMVGPGTGVA 563
Query: 372 PFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 431
PF GF+QER L++ G E+G +LL++GCR DY+Y +EL F Q G+L+QL VAFSRE
Sbjct: 564 PFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHQDGSLTQLNVAFSRE 623
Query: 432 GPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490
P K YVQH + +W ++ E GA++YVCGDA++MARDV T + IV E G+++ ++
Sbjct: 624 QPHKVYVQHLLKRDKEHLWQLIHEAGAHIYVCGDARNMARDVQNTFYDIVAEVGAMEHAQ 683
Query: 491 AESMVKNLQMTGRYLRDVW 509
A +K L GRY DVW
Sbjct: 684 AVDYIKKLMTKGRYSLDVW 702
|
|
| UNIPROTKB|F1P2T2 POR "NADPH--cytochrome P450 reductase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 195/499 (39%), Positives = 291/499 (58%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y +V
Sbjct: 198 GAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELVV 251
Query: 83 YDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+ + + + GE KS+ N +DA++P + V ++L+ +R HLE D
Sbjct: 252 HTDVNMNKVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTENRKLNE-GGERHLMHLELD 308
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N + V + +LG DT SL+ E+ S
Sbjct: 309 ISNSKIRYESGDHVAVYPANDASLVNQLGEILGTDLDTVMSLNNLDEE------SNKKHP 362
Query: 196 FP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPA--GKDEYAQWI 252
FP P S RTALT Y E ++LR +AS + GK Y W+
Sbjct: 363 FPCPTSYRTALTYYLDITNPPRTNVLYELAQYATDTGEQEQLRKMASSSAEGKALYLSWV 422
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE- 311
V ++R++L ++ + PS +PP+ ++PRLQ RYYSI+SS +V P+ IH+ CA+ E
Sbjct: 423 VEARRNILAILQDMPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSIHI-CAVTVEY 480
Query: 312 KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLA 371
+T TGR++KG+ + W+K+ +P E + S P++VR+S F+LP P+IMIGPGTG+A
Sbjct: 481 ETKTGRLNKGVATNWLKDKVPNENGRN-SLVPMYVRKSQFRLPFKPSTPVIMIGPGTGIA 539
Query: 372 PFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 431
PF GF+QER L+E G E+G ++L++GCR + DY+Y EL F Q G L+QL VAFSR+
Sbjct: 540 PFIGFIQERAWLKEQGKEVGETVLYYGCRREREDYLYRQELARFKQEGVLTQLNVAFSRD 599
Query: 432 GPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490
K YVQH + + IW ++++G A++YVCGDA++MARDV T + IV E G+++ S+
Sbjct: 600 QAEKVYVQHLLKKNKEHIWKLVNDGNAHIYVCGDARNMARDVQNTFYEIVSEYGNMNQSQ 659
Query: 491 AESMVKNLQMTGRYLRDVW 509
A VK L GRY DVW
Sbjct: 660 AVDYVKKLMTKGRYSLDVW 678
|
|
| UNIPROTKB|P04175 POR "NADPH--cytochrome P450 reductase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 195/499 (39%), Positives = 292/499 (58%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y +V
Sbjct: 196 GAQRIFDLGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELVV 249
Query: 83 YDNADASV---GE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+ + D +V GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 250 HTDMDTAVVYTGEMGRLKSYENQK--PPFDAKNPFLAVVTTNRKLNQ-GTERHLMHLELD 306
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 307 ISDSKIRYESGDHVAVYPANDSALVNQLGEILGTDLDIVMSLNNLDEE------SNKRHP 360
Query: 196 FP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYAQWI 252
FP P + RTALT Y +E ++LR +AS +G K+ Y W+
Sbjct: 361 FPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEQLRKMASSSGEGKELYLSWV 420
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE- 311
V ++R +L ++ ++PS +PP+ +PRLQ RYYSI+SS +V P+ +H+ CA+V E
Sbjct: 421 VEARRHILAILQDYPSLRPPID-HLCERLPRLQARYYSIASSSKVHPNSVHI-CAVVVEY 478
Query: 312 KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLA 371
+T +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP A P+IM+GPGTG+A
Sbjct: 479 ETKSGRVNKGVATSWLRAKEPAGENGRRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVA 538
Query: 372 PFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 431
PF GF+QER LQE G E+G +LL++GCR DY+Y +EL F GAL++L VAFSRE
Sbjct: 539 PFIGFIQERAWLQEQGKEVGETLLYYGCRRSDEDYLYREELAQFHAKGALTRLSVAFSRE 598
Query: 432 GPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490
P K YVQH + +W ++ +G A++Y+CGDA++MARDV T IV EQG ++ ++
Sbjct: 599 QPQKVYVQHLLKRDKEHLWKLIHDGGAHIYICGDARNMARDVQNTFCDIVAEQGPMEHAQ 658
Query: 491 AESMVKNLQMTGRYLRDVW 509
A VK L GRY DVW
Sbjct: 659 AVDYVKKLMTKGRYSLDVW 677
|
|
| UNIPROTKB|P16435 POR "NADPH--cytochrome P450 reductase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 192/498 (38%), Positives = 291/498 (58%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y +V
Sbjct: 196 GAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVE------ATGEESSIRQYELVV 249
Query: 83 YDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+ + DA+ +GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 250 HTDIDAAKVYMGEMGRLKSYENQK--PPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELD 306
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 307 ISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHP 360
Query: 196 FP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYAQWI 252
FP P S RTALT Y +E + LR +AS +G K+ Y W+
Sbjct: 361 FPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWV 420
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE- 311
V ++R +L ++ + PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+V E
Sbjct: 421 VEARRHILAILQDCPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAVVVEY 478
Query: 312 KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLA 371
+T GR++KG+ + W++ P ++ + P+FVR+S F+LP A P+IM+GPGTG+A
Sbjct: 479 ETKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVA 538
Query: 372 PFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 431
PF GF+QER L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE
Sbjct: 539 PFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSRE 598
Query: 432 GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 491
K YVQH + + +W ++ GA++YVCGDA++MARDV T + IV E G+++ ++A
Sbjct: 599 QSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQA 658
Query: 492 ESMVKNLQMTGRYLRDVW 509
+K L GRY DVW
Sbjct: 659 VDYIKKLMTKGRYSLDVW 676
|
|
| RGD|68335 Por "P450 (cytochrome) oxidoreductase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
Identities = 189/499 (37%), Positives = 289/499 (57%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y +V
Sbjct: 196 GAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVE------ATGEESSIRQYELVV 249
Query: 83 YDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+++ D + GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 250 HEDMDVAKVYTGEMGRLKSYENQK--PPFDAKNPFLAAVTANRKLNQ-GTERHLMHLELD 306
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 307 ISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEE------SNKKHP 360
Query: 196 FP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYAQWI 252
FP P + RTALT Y +E + L +AS +G K+ Y W+
Sbjct: 361 FPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWV 420
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE- 311
V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+ E
Sbjct: 421 VEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAVAVEY 478
Query: 312 KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLA 371
+ +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP + P+IM+GPGTG+A
Sbjct: 479 EAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIA 538
Query: 372 PFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 431
PF GF+QER L+E G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE
Sbjct: 539 PFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSRE 598
Query: 432 GPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490
K YVQH + +W ++ EG A++YVCGDA++MA+DV T + IV E G ++ ++
Sbjct: 599 QAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQ 658
Query: 491 AESMVKNLQMTGRYLRDVW 509
A VK L GRY DVW
Sbjct: 659 AVDYVKKLMTKGRYSLDVW 677
|
|
| MGI|MGI:97744 Por "P450 (cytochrome) oxidoreductase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 189/499 (37%), Positives = 288/499 (57%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE WP + + +T ++I +Y +V
Sbjct: 196 GAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVE------ATGEESSIRQYELVV 249
Query: 83 YDNADAS---VGE----KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+++ D + GE KS+ N +DA++P + V ++L+ ++R HLE D
Sbjct: 250 HEDMDTAKVYTGEMGRLKSYENQK--PPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELD 306
Query: 136 IAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPT 195
I+ + + YE+GDHV VY N S V + +LG D SL+ E+ S
Sbjct: 307 ISDSKIRYESGDHVAVYPANDSTLVNQIGEILGADLDVIMSLNNLDEE------SNKKHP 360
Query: 196 FP-PCSLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLASPAG--KDEYAQWI 252
FP P + RTALT Y +E + L +AS +G K+ Y W+
Sbjct: 361 FPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWV 420
Query: 253 VASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE- 311
V ++R +L ++ ++PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ CA+ E
Sbjct: 421 VEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHI-CAVAVEY 478
Query: 312 KTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLA 371
+ +GRV+KG+ ++W++ P ++ + P+FVR+S F+LP P+IM+GPGTG+A
Sbjct: 479 EAKSGRVNKGVATSWLRTKEPAGENGRRALVPMFVRKSQFRLPFKPTTPVIMVGPGTGVA 538
Query: 372 PFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 431
PF GF+QER L+E G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE
Sbjct: 539 PFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSRE 598
Query: 432 GPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490
K YVQH + +W ++ EG A++YVCGDA++MA+DV T + IV E G ++ ++
Sbjct: 599 QAHKVYVQHLLKRDKEHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQ 658
Query: 491 AESMVKNLQMTGRYLRDVW 509
A VK L GRY DVW
Sbjct: 659 AVDYVKKLMTKGRYSLDVW 677
|
|
| FB|FBgn0015623 Cpr "Cytochrome P450 reductase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 193/494 (39%), Positives = 279/494 (56%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL-DNLLRDDDDPTTVSTPYTAAISEYRVV 81
GA R+ +GLGDDD IEDDF W++ WP + D+ + + Y + E V
Sbjct: 200 GANRVFELGLGDDDANIEDDFITWKDRFWPAVCDHFGIEGGGEEVLIRQYR--LLEQPDV 257
Query: 82 FYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGL 141
D + N +DA++P + + V +ELH RSC H+E I G+ +
Sbjct: 258 QPDRIYTGEIARLHSIQNQRPPFDAKNPFLAPIKVNRELHK-GGGRSCMHIELSIEGSKM 316
Query: 142 TYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSL-HTDKEDGTPLGKSTLPPTFP-PC 199
Y+ GDHV ++ N VE+ L DT FSL +TD + S P FP P
Sbjct: 317 RYDAGDHVAMFPVNDKSLVEKLGQLCNADLDTVFSLINTDTDS------SKKHP-FPCPT 369
Query: 200 SLRTALTKYXXXXXXXXXXXXXXXXXXXXXXTEADRLRHLAS--PAGKDEYAQWIVASQR 257
+ RTALT Y E + LR +AS P GK++Y WI + R
Sbjct: 370 TYRTALTHYLEITAIPRTHILKELAEYCTDEKEKELLRSMASISPEGKEKYQSWIQDACR 429
Query: 258 SLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR 317
+++ ++ + S +PP+ ++PRLQPRYYSISSS ++ P+ +HVT LV KTPTGR
Sbjct: 430 NIVHILEDIKSCRPPID-HVCELLPRLQPRYYSISSSAKLHPTDVHVTAVLVEYKTPTGR 488
Query: 318 VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFL 377
++KG+ +T++KN P + S + P+F+R+S F+LP + PIIM+GPGTGLAPFRGF+
Sbjct: 489 INKGVATTYLKNKQP-QGSEEVK-VPVFIRKSQFRLPTKPETPIIMVGPGTGLAPFRGFI 546
Query: 378 QERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEY 437
QER L++ G +G S+L+FGCR R DYIYE EL +V+ G L+ L AFSR+ K Y
Sbjct: 547 QERQFLRDEGKTVGESILYFGCRKRSEDYIYESELEEWVKKGTLN-LKAAFSRDQGKKVY 605
Query: 438 VQHKMMEKSSD-IWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMV 495
VQH ++E+ +D IWN++ E + Y+CGDAK+MA DV L I+ +G++ + A +
Sbjct: 606 VQH-LLEQDADLIWNVIGENKGHFYICGDAKNMAVDVRNILVKILSTKGNMSEADAVQYI 664
Query: 496 KNLQMTGRYLRDVW 509
K ++ RY DVW
Sbjct: 665 KKMEAQKRYSADVW 678
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9SUM3 | NCPR2_ARATH | 1, ., 6, ., 2, ., 4 | 0.7642 | 0.9626 | 0.6891 | yes | no |
| P37116 | NCPR_VIGRR | 1, ., 6, ., 2, ., 4 | 0.7227 | 0.9548 | 0.7043 | N/A | no |
| Q05001 | NCPR_CATRO | 1, ., 6, ., 2, ., 4 | 0.8102 | 0.9548 | 0.6806 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 509 | |||
| cd06204 | 416 | cd06204, CYPOR, NADPH cytochrome p450 reductase (C | 0.0 | |
| cd06207 | 382 | cd06207, CyPoR_like, NADPH cytochrome p450 reducta | 1e-127 | |
| COG0369 | 587 | COG0369, CysJ, Sulfite reductase, alpha subunit (f | 1e-121 | |
| cd06199 | 360 | cd06199, SiR, Cytochrome p450- like alpha subunits | 1e-120 | |
| cd06203 | 398 | cd06203, methionine_synthase_red, Human methionine | 1e-106 | |
| cd06202 | 406 | cd06202, Nitric_oxide_synthase, The ferredoxin-red | 1e-106 | |
| pfam00667 | 217 | pfam00667, FAD_binding_1, FAD binding domain | 1e-102 | |
| cd06206 | 384 | cd06206, bifunctional_CYPOR, These bifunctional pr | 6e-95 | |
| PRK06214 | 530 | PRK06214, PRK06214, sulfite reductase; Provisional | 1e-91 | |
| TIGR01931 | 597 | TIGR01931, cysJ, sulfite reductase [NADPH] flavopr | 1e-87 | |
| cd06182 | 267 | cd06182, CYPOR_like, NADPH cytochrome p450 reducta | 3e-86 | |
| PRK10953 | 600 | PRK10953, cysJ, sulfite reductase subunit alpha; P | 7e-63 | |
| cd06200 | 245 | cd06200, SiR_like1, Cytochrome p450- like alpha su | 1e-36 | |
| cd00322 | 223 | cd00322, FNR_like, Ferredoxin reductase (FNR), an | 1e-30 | |
| cd06208 | 286 | cd06208, CYPOR_like_FNR, These ferredoxin reductas | 5e-30 | |
| cd06201 | 289 | cd06201, SiR_like2, Cytochrome p450- like alpha su | 1e-29 | |
| pfam00175 | 106 | pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi | 2e-19 | |
| PLN03116 | 307 | PLN03116, PLN03116, ferredoxin--NADP+ reductase; P | 5e-17 | |
| TIGR03224 | 411 | TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reduc | 5e-12 | |
| PLN03115 | 367 | PLN03115, PLN03115, ferredoxin--NADP(+) reductase; | 3e-10 | |
| cd06211 | 238 | cd06211, phenol_2-monooxygenase_like, Phenol 2-mon | 4e-07 | |
| cd06182 | 267 | cd06182, CYPOR_like, NADPH cytochrome p450 reducta | 5e-06 | |
| COG0543 | 252 | COG0543, UbiB, 2-polyprenylphenol hydroxylase and | 5e-06 | |
| COG4097 | 438 | COG4097, COG4097, Predicted ferric reductase [Inor | 4e-05 | |
| cd06216 | 243 | cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi | 5e-05 | |
| cd06209 | 228 | cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc | 8e-05 | |
| cd06195 | 241 | cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i | 9e-05 | |
| cd06184 | 247 | cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P) | 0.002 | |
| cd06187 | 224 | cd06187, O2ase_reductase_like, The oxygenase reduc | 0.002 |
| >gnl|CDD|99801 cd06204, CYPOR, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 615 bits (1588), Expect = 0.0
Identities = 211/423 (49%), Positives = 276/423 (65%), Gaps = 25/423 (5%)
Query: 105 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEAL 164
DA++P + VAV +EL T S DRSC H+EFDI+G+G+ Y+TGDH+ V+ N SE VE L
Sbjct: 1 DAKNPFLAPVAVSRELFTGS-DRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLL 59
Query: 165 SLLGLS-PDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLAL 223
+LGL DT SL + E S P P + RTAL Y D+ + + L AL
Sbjct: 60 KVLGLDDRDTVISLKSLDEPA-----SKKVPFPCPTTYRTALRHYLDITAPVSRQVLAAL 114
Query: 224 AAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKP--PLGVFFAAIV 281
A A DP E +RL LAS GKDEYA+WIV R+LLEV+ +FPSAKP P F ++
Sbjct: 115 AQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFPSAKPTPPPFDFLIELL 173
Query: 282 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPME------- 334
PRLQPRYYSISSS +V P+RIH+T +V TPTGR+ KG+ + W+ P
Sbjct: 174 PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233
Query: 335 --------KSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA 386
K S P+FVR+SNF+LP P+IMIGPGTG+APFRGF+QER AL+E+
Sbjct: 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKES 293
Query: 387 GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKS 446
G ++GP+LLFFGCR+ D+IY+DEL + + G L +L+ AFSRE P K YVQH++ E +
Sbjct: 294 GKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHA 353
Query: 447 SDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLR 506
+W +++EGAY+YVCGDAK+MARDV +TL I+ EQG + ++AE VK L+ GRY
Sbjct: 354 EQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGGMTETEAEEYVKKLKTRGRYQE 413
Query: 507 DVW 509
DVW
Sbjct: 414 DVW 416
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 416 |
| >gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 375 bits (965), Expect = e-127
Identities = 164/394 (41%), Positives = 231/394 (58%), Gaps = 19/394 (4%)
Query: 118 KELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSL 177
K L DRS H+EFD+ G+GL+YETGD++G+Y EN V+E L+ LGL D +
Sbjct: 6 KRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRV 65
Query: 178 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRL 236
++ + PP FP P S+R L K+ D+ P K L L+ A+D E + L
Sbjct: 66 EPNE------QQRGKPP-FPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDL 118
Query: 237 RHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPR 296
LAS G+ EY ++ + + LEV+ +FPS +P L + P ++PRYYSISSSP
Sbjct: 119 YKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTLE-QLLELCPLIKPRYYSISSSPL 174
Query: 297 VAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD 356
P+ +H+ +LV KTP+GR GLCS+++ +F+++S+FKLP D
Sbjct: 175 KNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV------GQRVTVFIKKSSFKLPKD 228
Query: 357 AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFV 416
K PIIM+GPGTGLAPFR FLQER AL G E+GP LL+FGCR+ DY+Y++EL +
Sbjct: 229 PKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYE 288
Query: 417 QSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGA-YLYVCGDAKSMARDVHRT 475
+SG L+ L AFSR+ P K YVQ + E S ++ +L EGA +YVCG M DV
Sbjct: 289 KSGVLTTLGTAFSRDQPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEA 348
Query: 476 LHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
I+++ G D AE ++ L+ GRY+ + W
Sbjct: 349 FEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 382 |
| >gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 367 bits (943), Expect = e-121
Identities = 163/488 (33%), Positives = 240/488 (49%), Gaps = 63/488 (12%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA RL P D Q E + WR+ V L + + + S Y
Sbjct: 162 GATRLFPRVEADV-QDFEAAAAPWRDDVLELLKSKFPGQEAAPAQVATSPQSESPYSKP- 219
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
SV + ++L SD+ H+E D+ +GL
Sbjct: 220 ----APSVAI---------------------LLENRKLTGRDSDKDVRHIELDLPDSGLR 254
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
YE GD +GV+ EN E V+E L LLGL P+ ++ + L
Sbjct: 255 YEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVDGE-----------------TLPLV 297
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
AL + + +S KS L LA A L L D A +R+L++V
Sbjct: 298 EALKSHFEF-TSAPKSLLENLAHFAGQEELRRLLEQL------DIADLQDYAKRRTLIDV 350
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
+ +FP AK P ++P L+PR YSI+SSP V+P +H+T +V + GR G+
Sbjct: 351 LRDFPPAKLPAE-ELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGV 408
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERF 381
CS ++ + L + P+FV+ NF+LP D + PIIMIGPGTG+APFR F+QER
Sbjct: 409 CSGYLADLLEEGDT-----IPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERA 463
Query: 382 ALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 441
A G + LFFGCR+ D++Y++E +++ G L++L +AFSR+ K YVQ +
Sbjct: 464 ANGAEGK----NWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDR 519
Query: 442 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMT 501
+ E++ ++W L EGA++YVCGDAK MA+DV L I+ ++G L +AE +K L+
Sbjct: 520 LREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKE 579
Query: 502 GRYLRDVW 509
GRY RDV+
Sbjct: 580 GRYQRDVY 587
|
Length = 587 |
| >gnl|CDD|99796 cd06199, SiR, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 355 bits (914), Expect = e-120
Identities = 155/399 (38%), Positives = 220/399 (55%), Gaps = 43/399 (10%)
Query: 114 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDT 173
V + L P S++ H+E D+ G+GL+YE GD +GVY N V+E L+ LGLS D
Sbjct: 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDE 61
Query: 174 YFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEA 233
S T PL R AL K+ ++ + LLAL + T A
Sbjct: 62 PVS--TVGGGTLPL--------------REALIKHYEI-----TTLLLALLESYAADTGA 100
Query: 234 DRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPL-GVFFAAIVPRLQPRYYSIS 292
L LA+ +A+ L +V+ P L ++ LQPR YSI+
Sbjct: 101 LELLALAALEAVLAFAE--------LRDVLDLLPIPPARLTAEELLDLLRPLQPRLYSIA 152
Query: 293 SSPRVAPSRIHVTCALV-YEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-N 350
SSP+ P +H+T A+V YE GR KG+ ST++ + L K D P+FV+ + +
Sbjct: 153 SSPKAVPDEVHLTVAVVRYESH--GRERKGVASTFLADRL---KEGDT--VPVFVQPNPH 205
Query: 351 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYED 410
F+LP D PIIM+GPGTG+APFR FLQER A GA+ G + LFFG R+ D++Y+D
Sbjct: 206 FRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT---GAK-GKNWLFFGERHFATDFLYQD 261
Query: 411 ELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR 470
EL +++ G L++L AFSR+ K YVQ +M E+ +++W L EGA+ YVCGDAK MA+
Sbjct: 262 ELQQWLKDGVLTRLDTAFSRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAK 321
Query: 471 DVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
DV L I+ +G +D +AE+ +K L+ RY RDV+
Sbjct: 322 DVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. Length = 360 |
| >gnl|CDD|99800 cd06203, methionine_synthase_red, Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-106
Identities = 149/389 (38%), Positives = 217/389 (55%), Gaps = 21/389 (5%)
Query: 132 LEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSLHTDKEDGTPLGK 189
L D++ TG Y+ GD +G+ N + VE L LGL D + +
Sbjct: 20 LTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVP-NTKKKN- 77
Query: 190 STLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEY 248
+ +P P +LRT LT D+ + PKK L ALA SD E RL L S G ++Y
Sbjct: 78 AKVPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDY 137
Query: 249 AQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCAL 308
++ SLL+++ FPS +PPL + + PRLQPR YSI+SSP P ++ ++
Sbjct: 138 TDFVRKRGLSLLDLLEAFPSCRPPLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSV 196
Query: 309 VYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FKLPAD-AKVPIIMIGP 366
V GLC++W+++ S+ P ++R S+ F+LP D + PIIM+GP
Sbjct: 197 VEFPAK------GLCTSWLESLCLSASSHGVKV-PFYLRSSSRFRLPPDDLRRPIIMVGP 249
Query: 367 GTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 424
GTG+APF GFLQ R L+E+ G + LFFGCR+R DY++ DEL F++ G L++L
Sbjct: 250 GTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRL 309
Query: 425 IVAFSRE---GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIV 480
IVAFSR+ G T +YVQ K+ E+ + ++L A +YVCGDAK MA+DV T I+
Sbjct: 310 IVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDIL 369
Query: 481 QEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
++ LD +A+ ++ L+ RYL DVW
Sbjct: 370 SKELGLDKLEAKKLLARLRKEDRYLEDVW 398
|
In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 398 |
| >gnl|CDD|99799 cd06202, Nitric_oxide_synthase, The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain | Back alignment and domain information |
|---|
Score = 321 bits (825), Expect = e-106
Identities = 161/410 (39%), Positives = 224/410 (54%), Gaps = 25/410 (6%)
Query: 114 VAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLL--GLS 170
V R+ L +P S RS ++ D G L Y+ GDHVG++ N E V+ L L
Sbjct: 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPP 61
Query: 171 PDTYFSLHTDKEDGTPLG-KSTLPP--TFPPCSLRTALTKYADLLSSPKKSALLALAAHA 227
PD L +E T LG T P PPC+LR ALT+Y D+ + P L LA A
Sbjct: 62 PDQVIKLEVLEERSTALGIIKTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLA 121
Query: 228 SDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPR 287
+D + +RL L G EY W ++LEV+ EFPS + P + + P LQPR
Sbjct: 122 TDEKDKERLEVLG--KGSSEYEDWKWYKNPNILEVLEEFPSLQVPASLLLTQL-PLLQPR 178
Query: 288 YYSISSSPRVAPSRIHVTCALVYEKTPTGR--VHKGLCSTWMKNSLPMEKSNDCSWAPIF 345
YYSISSSP + P IH+T A+V +T G+ VH G+CSTW+ P + P F
Sbjct: 179 YYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDT------VPCF 232
Query: 346 VRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQER----FALQEAGAELGPSLLFFGCR 400
VR +F LP D VP+IM+GPGTG+APFR F Q+R ++ G + G LFFGCR
Sbjct: 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCR 292
Query: 401 NRKMDYIYEDELNNFVQSGALSQLIVAFSRE-GPTKEYVQHKMMEKSSDIWNML-SEGAY 458
N +D IY++E G L+++ A SRE G K YVQ + E++ +++ L EG +
Sbjct: 293 NSTIDDIYKEETEEAKNKGVLTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGH 352
Query: 459 LYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 508
+YVCGD +MA DV +T+ I+ E G++ + +AE + L+ RY D+
Sbjct: 353 IYVCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFILKLRDENRYHEDI 401
|
The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. Length = 406 |
| >gnl|CDD|216051 pfam00667, FAD_binding_1, FAD binding domain | Back alignment and domain information |
|---|
Score = 306 bits (785), Expect = e-102
Identities = 113/223 (50%), Positives = 143/223 (64%), Gaps = 7/223 (3%)
Query: 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 163
+DA++P ++V V +EL +P SDRSC HLE DI+G+GL Y+TGDH+GVY N E VEE
Sbjct: 2 FDAKNPFLASVVVNRELTSPGSDRSCIHLELDISGSGLRYQTGDHLGVYPSNDEELVEEL 61
Query: 164 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLAL 223
L LLGL PDT SL E P PP +LR ALT Y ++ P K L AL
Sbjct: 62 LELLGLDPDTVVSLEALDER------WVKHPFPPPTTLRQALTYYLEITGPPTKQLLEAL 115
Query: 224 AAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPR 283
A +ASD E RL L+S AGK EY +W + R+LLEV+ EFPSA+ P F ++PR
Sbjct: 116 AQYASDEEEKQRLEKLSSDAGKQEYKEWKLNKARTLLEVLEEFPSAQLPAE-FLLELLPR 174
Query: 284 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 326
LQPRYYSISSSP+V P+ +HVT +V +T GR+ KG+ S W
Sbjct: 175 LQPRYYSISSSPKVHPNEVHVTVVVVEYETGEGRIRKGVASNW 217
|
This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, Nitric oxide synthase and methionine synthase reductase. Length = 217 |
| >gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR) | Back alignment and domain information |
|---|
Score = 293 bits (751), Expect = 6e-95
Identities = 140/406 (34%), Positives = 206/406 (50%), Gaps = 33/406 (8%)
Query: 114 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDT 173
V +EL P S HLE + G+TY GD++ V N E V AL GL+ DT
Sbjct: 2 VVENRELTAPGVGPSKRHLELRLP-DGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDT 60
Query: 174 YFSLHTDKEDGT-PLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTE 232
++ PLG P S+ L+ Y +L + L ALA P
Sbjct: 61 VLTISASGSATGLPLGT--------PISVSELLSSYVELSQPATRRQLAALAEATRCPDT 112
Query: 233 ADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSIS 292
L LA + YA ++A + S+L+++ FPS PL F A++P ++PR YSIS
Sbjct: 113 KALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALPLATF-LAMLPPMRPRQYSIS 167
Query: 293 SSPRVAPSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN- 350
SSP V P +T +++ +G+ ++G+ S+++ + P + + VR S+
Sbjct: 168 SSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDS------IHVSVRPSHS 221
Query: 351 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYE 409
F+ P+D P+IMI GTGLAPFRGFLQER AL G +L P+LLFFGCR+ D +Y
Sbjct: 222 AFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYR 281
Query: 410 DELNNFVQSGALSQLIVAFSR--EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS 467
DEL + +G +S + A+SR G + YVQ ++ + ++W + +GA +YVCGD +
Sbjct: 282 DELEEWEAAGVVS-VRRAYSRPPGGGCR-YVQDRLWAEREEVWELWEQGARVYVCGDGR- 338
Query: 468 MARDVHRTLHTIVQEQGSLDS-SKAESMVKNLQM---TGRYLRDVW 509
MA V L I E+ S E + L+ GRY DV+
Sbjct: 339 MAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRYATDVF 384
|
NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 384 |
| >gnl|CDD|235745 PRK06214, PRK06214, sulfite reductase; Provisional | Back alignment and domain information |
|---|
Score = 289 bits (741), Expect = 1e-91
Identities = 149/427 (34%), Positives = 215/427 (50%), Gaps = 42/427 (9%)
Query: 85 NADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYE 144
A A+ A G +P + R+ L+ P S++ H+E D+AG+GL YE
Sbjct: 144 PAAAAADAAPAAAALGPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYE 203
Query: 145 TGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTA 204
GD +G++ N V+ ++ LG P+ P+G TL R A
Sbjct: 204 VGDSLGLFPANDPALVDAVIAALGAPPEF------------PIGGKTL---------REA 242
Query: 205 LTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 264
L + L +P L L ++ + + R LA+ D A + +L +
Sbjct: 243 LLEDVSLGPAP--DGLFELLSYITGGAARKKARALAAGEDPDGDAATL-----DVLAALE 295
Query: 265 EFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV-YEKTPTGRVHKGLC 323
+FP +P F A+ P LQPR YSISSSP+ P R+ +T V YE R+ G+
Sbjct: 296 KFPGIRPDPEAFVEALDP-LQPRLYSISSSPKATPGRVSLTVDAVRYEIG--SRLRLGVA 352
Query: 324 STWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFA 382
ST++ L ++V+++ F LPAD PIIM+GPGTG+APFR FL ER A
Sbjct: 353 STFLGERLAPGTR-----VRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAA 407
Query: 383 LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 442
+ G + LFFG + D+ YEDELN +G L++L +A+SR+G K YVQ +M
Sbjct: 408 TKAPGR----NWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGEEKTYVQDRM 463
Query: 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502
E +++W L EGA+ YVCGDAK MA+DV R L IV + G +A + V L+ G
Sbjct: 464 RENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAG 523
Query: 503 RYLRDVW 509
RY DV+
Sbjct: 524 RYQADVY 530
|
Length = 530 |
| >gnl|CDD|233643 TIGR01931, cysJ, sulfite reductase [NADPH] flavoprotein, alpha-component | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 1e-87
Identities = 159/488 (32%), Positives = 245/488 (50%), Gaps = 64/488 (13%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
G KRL+P D D + + + WR V L+ + STP
Sbjct: 173 GGKRLLP--RVDADLDYDANAAEWRAGVLTALNEQA-----KGSASTP------------ 213
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
S+ E + +VY Q+P R+ V +++ +S + H+E D+ G+GL
Sbjct: 214 ------SLSETPARSQTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLH 267
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
YE GD +GV+ +N V+E L LL L PD ++ G T+P L
Sbjct: 268 YEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTI----------GGKTIP-------LF 310
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262
AL + +L + K LL A + E L +A Y Q L+++
Sbjct: 311 EALITHFELTQNTK--PLLEAYAELTGNKELKAL--IADNEKLKAYIQ-----NTPLIDL 361
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322
+ ++P+ +++ L PR YSISSS +H+T +V GR G
Sbjct: 362 IRDYPADLDAEQ--LISLLRPLTPRLYSISSSQSEVGDEVHLTVGVV-RYQAHGRARLGG 418
Query: 323 CSTWMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERF 381
S ++ L K D P+++ NF+LP D PIIMIGPGTG+APFR F+QER
Sbjct: 419 ASGFLAERL---KEGDT--VPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQER- 472
Query: 382 ALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHK 441
E GA+ G + LFFG + D++Y+ E N+++ G L+++ +AFSR+ K YVQH+
Sbjct: 473 --AEDGAK-GKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHR 529
Query: 442 MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMT 501
+ E+ +++W L EGA++YVCGDAK MA+DVH+ L I+ ++G LD+ +AE + +L++
Sbjct: 530 IREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVE 589
Query: 502 GRYLRDVW 509
RY RDV+
Sbjct: 590 KRYQRDVY 597
|
This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. Length = 597 |
| >gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 3e-86
Identities = 113/235 (48%), Positives = 154/235 (65%), Gaps = 10/235 (4%)
Query: 279 AIVP--RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKS 336
++P LQPRYYSI+SSP V P +H+ +V + P GR+ KG+CS ++ K
Sbjct: 39 GVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGAK- 97
Query: 337 NDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLL 395
+F+R + +F+LP D PIIM+GPGTG+APFRGFLQER AL+ G GP+ L
Sbjct: 98 -----VTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWL 152
Query: 396 FFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEKSSDIWNMLS 454
FFGCRN DY+Y +EL ++ GAL++L VAFSRE K YVQ K+ E + ++ +L+
Sbjct: 153 FFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLLN 212
Query: 455 EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
EGA++YVCGDAKSMA+DV L I+ + G +D S AE +K L+ GRY+ DVW
Sbjct: 213 EGAHIYVCGDAKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267 |
| >gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 7e-63
Identities = 129/422 (30%), Positives = 214/422 (50%), Gaps = 69/422 (16%)
Query: 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 163
Y + P ++++V +++ +S++ H+E D+ +GL Y+ GD +GV+ +N V+E
Sbjct: 232 YSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEL 291
Query: 164 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALT--------------KYA 209
+ LL L D ++ GK TLP L AL YA
Sbjct: 292 VELLWLKGDEPVTVD---------GK-TLP-------LAEALQWHFELTVNTANIVENYA 334
Query: 210 DLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSA 269
L + LL L + L+H A + + M F A
Sbjct: 335 TL---TRSETLLPLVGDKA------ALQHYA---------------ATTPIVDMVRFAPA 370
Query: 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV-YEKTPTGRVHKGLCSTWMK 328
+ + P L PR YSI+SS + +H+T +V Y+ GR G S+++
Sbjct: 371 QLDAEQLIGLLRP-LTPRLYSIASSQAEVENEVHITVGVVRYDIE--GRARAGGASSFLA 427
Query: 329 NSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG 387
+ L E+ + +F+ + NF+LPA+ + P+IMIGPGTG+APFR F+Q+R A G
Sbjct: 428 DRL--EEEGEVR---VFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAA---DG 479
Query: 388 AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSS 447
A G + LFFG + D++Y+ E +V+ G L+++ +A+SR+ K YVQ K+ E+ +
Sbjct: 480 AP-GKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGA 538
Query: 448 DIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRD 507
++W +++GA++YVCGDA MA+DV + L ++ E G +D+ A+ + L++ RY RD
Sbjct: 539 ELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRD 598
Query: 508 VW 509
V+
Sbjct: 599 VY 600
|
Length = 600 |
| >gnl|CDD|99797 cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-36
Identities = 77/238 (32%), Positives = 109/238 (45%), Gaps = 36/238 (15%)
Query: 278 AAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKT-PTGRVHKGLCSTWMKNSLPME 334
A I PR L R YSI+S P+ + LV + G + GL S W+ P+
Sbjct: 38 AEIGPRHPLPHREYSIAS----LPADGAL-ELLVRQVRHADGGL--GLGSGWLTRHAPI- 89
Query: 335 KSNDCSWAPI---FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELG 391
A + F LP D P+I+IG GTGLA R L+ R A A
Sbjct: 90 ------GASVALRLRENPGFHLPDDG-RPLILIGNGTGLAGLRSHLRAR-----ARAGRH 137
Query: 392 PSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWN 451
+ L FG R D+ +EL + +G L++L +AFSR+ K YVQ ++ + ++
Sbjct: 138 RNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLAFSRDQAQKRYVQDRLRAAADELRA 197
Query: 452 MLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
++EGA +YVCG + MA V L I+ E V+ L GRY RDV+
Sbjct: 198 WVAEGAAIYVCGSLQGMAPGVDAVLDEIL----------GEEAVEALLAAGRYRRDVY 245
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 245 |
| >gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-30
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 276 FFAAIVPRLQPRYYSISSSPRVAPS-RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPME 334
R R YSI+SSP + V V G S W+ + P +
Sbjct: 31 LHLPGDGRGLRRAYSIASSPDEEGELELTV-----------KIVPGGPFSAWLHDLKPGD 79
Query: 335 KSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSL 394
+ + +F LP + P+++I G G+ PFR L+ A G
Sbjct: 80 E------VEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAAD----KPGGEIT 129
Query: 395 LFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML- 453
L +G R D ++ DEL + G +L++A SRE K ++ ++ + +
Sbjct: 130 LLYGARTPA-DLLFLDELEELAKEGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPD 188
Query: 454 SEGAYLYVCGDAKSMARDVHRTL 476
GA +Y+CG +MA+ V L
Sbjct: 189 DSGALVYICGPP-AMAKAVREAL 210
|
FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223 |
| >gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 5e-30
Identities = 73/231 (31%), Positives = 102/231 (44%), Gaps = 31/231 (13%)
Query: 286 PRYYSISSSPRVAPSRIHVTCAL-----VYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 340
R YSI+SS R T +L VY T KG+CS ++ + P +
Sbjct: 64 LRLYSIASS-RYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDD----- 117
Query: 341 WAPIFVR-----QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSL- 394
V+ LP D +IMI GTG+APFR FL+ F + A +
Sbjct: 118 -----VQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAW 172
Query: 395 LFFGCRNRKMDYIYEDELNNFV-QSGALSQLIVAFSREGP----TKEYVQHKMMEKSSDI 449
LFFG N +Y+DEL + Q ++ AFSRE K YVQ ++ E + +I
Sbjct: 173 LFFGVPNSD-SLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEI 231
Query: 450 WNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 499
WN+L + ++Y+CG K M V L T V E G ES+ K +
Sbjct: 232 WNLLDKDNTHVYICG-LKGMEPGVDDAL-TSVAEGGLAWEEFWESLKKKGR 280
|
Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286 |
| >gnl|CDD|99798 cd06201, SiR_like2, Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-29
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 40/227 (17%)
Query: 286 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVH-KGLCSTWMKNSLPMEKSNDCSWAPI 344
PR+YS++SS I V R H GLCS ++ + L K D A
Sbjct: 100 PRFYSLASSSSDGFLEICV------------RKHPGGLCSGYL-HGL---KPGDTIKA-- 141
Query: 345 FVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRK 403
F+R +F+ A P+I+IG GTG+AP GF++ A + P L++G R+
Sbjct: 142 FIRPNPSFRPAKGAA-PVILIGAGTGIAPLAGFIRANAARR-------PMHLYWGGRDPA 193
Query: 404 MDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG 463
D++YEDEL+ ++ G L+QL AFSR P YVQ ++ + + ++ +GA + VCG
Sbjct: 194 SDFLYEDELDQYLADGRLTQLHTAFSR-TPDGAYVQDRLRADAERLRRLIEDGAQIMVCG 252
Query: 464 DAKSMARDVHRTLHTI-VQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
+++MA+ V L I + SLD K + GRY DV+
Sbjct: 253 -SRAMAQGVAAVLEEILAPQPLSLDELKLQ---------GRYAEDVY 289
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 289 |
| >gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-19
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 363 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 422
MI GTG+AP L+ ++ L +G R D + +EL + +
Sbjct: 1 MIAGGTGIAPLYSVLKALLEDEDG----TEVYLVYGNRTED-DLLLREELEELAKK-YPN 54
Query: 423 QLIVAFSREGPTKE----YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 474
+VA SR YV ++E+ +YVCG M + V +
Sbjct: 55 LKVVAVSRTDDGWYGRKGYVTDALLEEHLSE---DLGDTDVYVCG-PPPMMKAVRK 106
|
Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106 |
| >gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 5e-17
Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 29/232 (12%)
Query: 286 PRYYSISSSPRVAPSRIHVTCAL-----VYEKTPTGRV---HKGLCSTWMKNSLPMEKSN 337
R YSI+S+ R T +L VY TG+ KG+CS ++ ++ P +K
Sbjct: 81 VRLYSIAST-RYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDK-- 137
Query: 338 DCSWAPIFVRQSNFK---LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GP 392
+ + + K LP D IM+ GTG+APFRGFL+ F + G
Sbjct: 138 ------VQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGL 191
Query: 393 SLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLIVAFSREGPTKE----YVQHKMMEKSS 447
+ LF G N +Y+DE +++ + + A SRE K+ YVQ K+ E S
Sbjct: 192 AWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSD 250
Query: 448 DIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 499
+I+ +L GA++Y CG K M + TL + +E+G K + KN Q
Sbjct: 251 EIFKLLDNGAHIYFCG-LKGMMPGIQDTLKRVAEERGESWEEKLSGLKKNKQ 301
|
Length = 307 |
| >gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 5e-12
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 408
S F +P + I+MI GTG AP R + R ++ G E G +LFFG R ++
Sbjct: 258 STFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE----- 311
Query: 409 EDELNNFVQSGALSQLI-------VAFSRE-GPTKEYVQHKMMEKSSDIWNML-SEGAYL 459
EL F G L +L AFSR K YVQ + E+++D+ +L Y+
Sbjct: 312 --ELPYF---GPLQKLPKDFIDINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYI 366
Query: 460 YVCGDAKSMARDVHRTLHTIVQEQG 484
Y+CG K M V + G
Sbjct: 367 YICG-LKGMEEGVLDAFRDVCATNG 390
|
Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB [Energy metabolism, Other]. Length = 411 |
| >gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 3e-10
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 19/209 (9%)
Query: 287 RYYSISSSP--RVAPSRIHVTCA--LVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 342
R YSI+SS S+ C LVY G + KG+CS ++ + P +
Sbjct: 146 RLYSIASSALGDFGDSKTVSLCVKRLVYTND-QGEIVKGVCSNFLCDLKPGAEVKIT--G 202
Query: 343 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GPSLLFFGCRN 401
P+ +P D IIM+ GTG+APFR FL + F + + G + LF G
Sbjct: 203 PV---GKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPT 259
Query: 402 RKMDYIYEDELNNFVQSGALS-QLIVAFSREGPT----KEYVQHKMMEKSSDIWNML-SE 455
+Y++E + + +L A SRE K Y+Q +M E + ++W +L +
Sbjct: 260 SS-SLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKD 318
Query: 456 GAYLYVCGDAKSMARDVHRTLHTIVQEQG 484
Y+Y+CG K M + + + ++ + G
Sbjct: 319 NTYVYMCG-LKGMEKGIDDIMVSLAAKDG 346
|
Length = 367 |
| >gnl|CDD|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 46/154 (29%), Positives = 58/154 (37%), Gaps = 30/154 (19%)
Query: 285 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSND-----C 339
R +SI+SSP A I + LV T VHK L K D
Sbjct: 51 GTRAFSIASSPSDAGE-IELHIRLVPGGIATTYVHKQL------------KEGDELEISG 97
Query: 340 SWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGC 399
+ FVR S + PII I G+GL+ R + L E G LFFG
Sbjct: 98 PYGDFFVRDS-------DQRPIIFIAGGSGLSSPRSMI---LDLLERGDTR-KITLFFGA 146
Query: 400 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP 433
R R + Y DE + + + A SRE P
Sbjct: 147 RTRA-ELYYLDEFEALEKDHPNFKYVPALSREPP 179
|
This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. Length = 238 |
| >gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 113 NVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 155
+ V ++L P S RS HLEFD++G + L Y+ GDH+GV N
Sbjct: 1 AITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267 |
| >gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 40/219 (18%)
Query: 259 LLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS-RIHVTCALVYEKTPTGR 317
LL + F + G F VP R YS++S+P +H+ VYE
Sbjct: 24 LLRLRLPFVALTFKPGQFVMLRVPGGVRRPYSLASAPDDKGELELHIR---VYEV----- 75
Query: 318 VHKGLCSTWMKNSLPMEKSNDCSWAPIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRG 375
G + ++ K D I VR N L P+++I GTG+AP
Sbjct: 76 ---GKVTKYIFG----LKEGD----KIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYA 124
Query: 376 FLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT- 434
+E L+E G + L +G R K D + DEL + + + +G
Sbjct: 125 IAKE---LKEKG-DANKVTLLYGARTAK-DLLLLDELEELA-----EKEVHPVTDDGWKG 174
Query: 435 -KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDV 472
K +V ++++ D E +Y+CG +M + V
Sbjct: 175 RKGFVTTDVLKELLD-----LEVDDVYICG-PPAMVKAV 207
|
Length = 252 |
| >gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 362 IMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 421
+ I G G+ PF L A + P + F C + +Y +EL Q
Sbjct: 319 VWIAGGIGITPFISMLFT-----LAERKSDPPVHLFYCSRNWEEALYAEELRALAQKLPN 373
Query: 422 SQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 477
L + S + Y+ + +E+ D ++ CG M + R L
Sbjct: 374 VVLHIIDSSKDG---YLDQEDLERYPD----RPRTRSVFFCG-PIKMMDSLRRDLK 421
|
Length = 438 |
| >gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 19/130 (14%)
Query: 283 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 342
R YS+SSSP I +T P G V S W+ +
Sbjct: 61 VRHWRSYSLSSSPTQEDGTITLTVK----AQPDGLV-----SNWL-----VNHLAPGDVV 106
Query: 343 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 402
+ Q +F LP +++I G+G+ P L+ + A++ LL++
Sbjct: 107 ELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRT-LLARGPTADV--VLLYYARTRE 163
Query: 403 KMDYIYEDEL 412
D I+ DEL
Sbjct: 164 --DVIFADEL 171
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243 |
| >gnl|CDD|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 8e-05
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 360 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS- 418
P++M+ GTGLAPF L L E G+ P L +G R D + D L +
Sbjct: 104 PLLMLAGGTGLAPFLSMLD---VLAEDGSAH-PVHLVYGV-TRDADLVELDRLEALAERL 158
Query: 419 GALSQLIVAFS--REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG 463
S V P K YV + + ++ +Y+CG
Sbjct: 159 PGFSFRTVVADPDSWHPRKGYVTDHLEAE-----DLNDGDVDVYLCG 200
|
Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. Length = 228 |
| >gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 9e-05
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 361 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 420
+ ++ GTG+APF L++ E +L G R + + Y+DE+ +
Sbjct: 104 LWLLATGTGIAPFLSMLRD----LEIWERFDKIVLVHGVRYAE-ELAYQDEIEALAKQYN 158
Query: 421 LSQLIV--AFSRE-------GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD 471
+ SRE G + ++ +E+ + + E +++ +CG+ + M D
Sbjct: 159 -GKFRYVPIVSREKENGALTGRIPDLIESGELEEHAG-LPLDPETSHVMLCGNPQ-MIDD 215
Query: 472 VHRTL 476
L
Sbjct: 216 TQELL 220
|
Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241 |
| >gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 31/198 (15%)
Query: 285 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSND---CSW 341
Q R YS+S +P RI V K R GL S ++ +++ K D S
Sbjct: 56 QIRQYSLSDAPNGDYYRISV-------K----REPGGLVSNYLHDNV---KVGDVLEVS- 100
Query: 342 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 401
AP +F L + P+++I G G+ P L+ E P RN
Sbjct: 101 AP----AGDFVLDEASDRPLVLISAGVGITPMLSMLEA--LAAEGPGR--PVTFIHAARN 152
Query: 402 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAY 458
+ + DEL +L V +S ++Y ++ + +L A
Sbjct: 153 SA-VHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLLPADAD 211
Query: 459 LYVCGDAKSMARDVHRTL 476
Y+CG M + V L
Sbjct: 212 FYLCGPVPFM-QAVREGL 228
|
Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. Length = 247 |
| >gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 28/138 (20%)
Query: 285 QPRYYSISSSPRVAPSRI--HVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 342
R YS ++ P I HV V G S + + L K D
Sbjct: 40 TWRAYSPANPPN-EDGEIEFHVR-----------AVPGGRVSNALHDEL---KVGD---- 80
Query: 343 PIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCR 400
+ + F L D P++ I GTGLAP R +++ G P LFFG R
Sbjct: 81 RVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVED---ALRRGEPR-PVHLFFGAR 136
Query: 401 NRKMDYIYEDELNNFVQS 418
+ D + L
Sbjct: 137 TER-DLYDLEGLLALAAR 153
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 509 | |||
| KOG1159 | 574 | consensus NADP-dependent flavoprotein reductase [E | 100.0 | |
| KOG1158 | 645 | consensus NADP/FAD dependent oxidoreductase [Energ | 100.0 | |
| PRK10953 | 600 | cysJ sulfite reductase subunit alpha; Provisional | 100.0 | |
| TIGR01931 | 597 | cysJ sulfite reductase [NADPH] flavoprotein, alpha | 100.0 | |
| COG0369 | 587 | CysJ Sulfite reductase, alpha subunit (flavoprotei | 100.0 | |
| cd06204 | 416 | CYPOR NADPH cytochrome p450 reductase (CYPOR) serv | 100.0 | |
| cd06203 | 398 | methionine_synthase_red Human methionine synthase | 100.0 | |
| cd06207 | 382 | CyPoR_like NADPH cytochrome p450 reductase (CYPOR) | 100.0 | |
| cd06202 | 406 | Nitric_oxide_synthase The ferredoxin-reductase (FN | 100.0 | |
| cd06206 | 384 | bifunctional_CYPOR These bifunctional proteins fus | 100.0 | |
| cd06199 | 360 | SiR Cytochrome p450- like alpha subunits of E. col | 100.0 | |
| PRK06214 | 530 | sulfite reductase; Provisional | 100.0 | |
| PF00667 | 219 | FAD_binding_1: FAD binding domain; InterPro: IPR00 | 100.0 | |
| PLN03115 | 367 | ferredoxin--NADP(+) reductase; Provisional | 100.0 | |
| cd06182 | 267 | CYPOR_like NADPH cytochrome p450 reductase (CYPOR) | 100.0 | |
| cd06200 | 245 | SiR_like1 Cytochrome p450- like alpha subunits of | 100.0 | |
| cd06201 | 289 | SiR_like2 Cytochrome p450- like alpha subunits of | 100.0 | |
| PLN03116 | 307 | ferredoxin--NADP+ reductase; Provisional | 100.0 | |
| TIGR03224 | 411 | benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p | 100.0 | |
| cd06208 | 286 | CYPOR_like_FNR These ferredoxin reductases are rel | 100.0 | |
| cd06188 | 283 | NADH_quinone_reductase Na+-translocating NADH:quin | 99.94 | |
| cd00322 | 223 | FNR_like Ferredoxin reductase (FNR), an FAD and NA | 99.94 | |
| PRK10926 | 248 | ferredoxin-NADP reductase; Provisional | 99.94 | |
| cd06189 | 224 | flavin_oxioreductase NAD(P)H dependent flavin oxid | 99.94 | |
| PRK08051 | 232 | fre FMN reductase; Validated | 99.94 | |
| cd06195 | 241 | FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c | 99.94 | |
| cd06211 | 238 | phenol_2-monooxygenase_like Phenol 2-monooxygenase | 99.94 | |
| PRK07609 | 339 | CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat | 99.94 | |
| PRK11872 | 340 | antC anthranilate dioxygenase reductase; Provision | 99.93 | |
| cd06190 | 232 | T4MO_e_transfer_like Toluene-4-monoxygenase electr | 99.93 | |
| PRK05464 | 409 | Na(+)-translocating NADH-quinone reductase subunit | 99.93 | |
| PRK10684 | 332 | HCP oxidoreductase, NADH-dependent; Provisional | 99.93 | |
| cd06210 | 236 | MMO_FAD_NAD_binding Methane monooxygenase (MMO) re | 99.93 | |
| TIGR01941 | 405 | nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo | 99.93 | |
| PRK13289 | 399 | bifunctional nitric oxide dioxygenase/dihydropteri | 99.93 | |
| cd06209 | 228 | BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD | 99.93 | |
| PRK08345 | 289 | cytochrome-c3 hydrogenase subunit gamma; Provision | 99.93 | |
| cd06187 | 224 | O2ase_reductase_like The oxygenase reductase FAD/N | 99.93 | |
| cd06212 | 232 | monooxygenase_like The oxygenase reductase FAD/NAD | 99.93 | |
| cd06191 | 231 | FNR_iron_sulfur_binding Iron-sulfur binding Ferred | 99.93 | |
| PRK05713 | 312 | hypothetical protein; Provisional | 99.92 | |
| cd06194 | 222 | FNR_N-term_Iron_sulfur_binding Iron-sulfur binding | 99.92 | |
| cd06213 | 227 | oxygenase_e_transfer_subunit The oxygenase reducta | 99.92 | |
| cd06221 | 253 | sulfite_reductase_like Anaerobic sulfite reductase | 99.92 | |
| cd06184 | 247 | flavohem_like_fad_nad_binding FAD_NAD(P)H binding | 99.91 | |
| cd06215 | 231 | FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr | 99.91 | |
| PTZ00274 | 325 | cytochrome b5 reductase; Provisional | 99.91 | |
| cd06216 | 243 | FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr | 99.91 | |
| TIGR02160 | 352 | PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, | 99.91 | |
| COG1018 | 266 | Hmp Flavodoxin reductases (ferredoxin-NADPH reduct | 99.91 | |
| cd06196 | 218 | FNR_like_1 Ferredoxin reductase-like proteins cata | 99.91 | |
| cd06198 | 216 | FNR_like_3 NAD(P) binding domain of ferredoxin red | 99.9 | |
| cd06217 | 235 | FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr | 99.9 | |
| PRK08221 | 263 | anaerobic sulfite reductase subunit B; Provisional | 99.9 | |
| cd06214 | 241 | PA_degradation_oxidoreductase_like NAD(P) binding | 99.9 | |
| cd06218 | 246 | DHOD_e_trans FAD/NAD binding domain in the electro | 99.9 | |
| cd06183 | 234 | cyt_b5_reduct_like Cytochrome b5 reductase catalyz | 99.9 | |
| TIGR02911 | 261 | sulfite_red_B sulfite reductase, subunit B. Member | 99.89 | |
| PTZ00319 | 300 | NADH-cytochrome B5 reductase; Provisional | 99.89 | |
| cd06185 | 211 | PDR_like Phthalate dioxygenase reductase (PDR) is | 99.89 | |
| COG2871 | 410 | NqrF Na+-transporting NADH:ubiquinone oxidoreducta | 99.89 | |
| cd06197 | 220 | FNR_like_2 FAD/NAD(P) binding domain of ferredoxin | 99.88 | |
| COG0543 | 252 | UbiB 2-polyprenylphenol hydroxylase and related fl | 99.88 | |
| PRK00054 | 250 | dihydroorotate dehydrogenase electron transfer sub | 99.87 | |
| cd06220 | 233 | DHOD_e_trans_like2 FAD/NAD binding domain in the e | 99.87 | |
| cd06192 | 243 | DHOD_e_trans_like FAD/NAD binding domain (electron | 99.87 | |
| cd06219 | 248 | DHOD_e_trans_like1 FAD/NAD binding domain in the e | 99.86 | |
| PRK06222 | 281 | ferredoxin-NADP(+) reductase subunit alpha; Review | 99.86 | |
| PLN02252 | 888 | nitrate reductase [NADPH] | 99.86 | |
| KOG0534 | 286 | consensus NADH-cytochrome b-5 reductase [Coenzyme | 99.86 | |
| PRK05802 | 320 | hypothetical protein; Provisional | 99.85 | |
| COG4097 | 438 | Predicted ferric reductase [Inorganic ion transpor | 99.84 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 99.82 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.78 | |
| PF00175 | 109 | NAD_binding_1: Oxidoreductase NAD-binding domain ; | 99.77 | |
| cd06193 | 235 | siderophore_interacting Siderophore interacting pr | 99.77 | |
| cd06186 | 210 | NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz | 99.76 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.74 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.68 | |
| PLN02292 | 702 | ferric-chelate reductase | 99.56 | |
| PLN02844 | 722 | oxidoreductase/ferric-chelate reductase | 99.53 | |
| PLN02631 | 699 | ferric-chelate reductase | 99.52 | |
| KOG3378 | 385 | consensus Globins and related hemoproteins [Energy | 99.35 | |
| PF08030 | 156 | NAD_binding_6: Ferric reductase NAD binding domain | 98.9 | |
| PRK05723 | 151 | flavodoxin; Provisional | 98.85 | |
| KOG0039 | 646 | consensus Ferric reductase, NADH/NADPH oxidase and | 98.56 | |
| PRK09004 | 146 | FMN-binding protein MioC; Provisional | 98.53 | |
| PRK08105 | 149 | flavodoxin; Provisional | 98.48 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 98.31 | |
| PF00970 | 99 | FAD_binding_6: Oxidoreductase FAD-binding domain; | 97.93 | |
| COG2375 | 265 | ViuB Siderophore-interacting protein [Inorganic io | 95.7 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 95.43 | |
| KOG0560 | 638 | consensus Sulfite reductase (ferredoxin) [Inorgani | 92.61 | |
| cd06182 | 267 | CYPOR_like NADPH cytochrome p450 reductase (CYPOR) | 92.33 | |
| PF00258 | 143 | Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This | 88.58 | |
| PLN03116 | 307 | ferredoxin--NADP+ reductase; Provisional | 82.42 | |
| cd06208 | 286 | CYPOR_like_FNR These ferredoxin reductases are rel | 80.14 |
| >KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-96 Score=726.31 Aligned_cols=469 Identities=33% Similarity=0.592 Sum_probs=402.4
Q ss_pred cccCCcchhHHHHHhhcCCeecccCcccCCCC--CchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEe
Q 010480 6 FLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFY 83 (509)
Q Consensus 6 f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~--~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (509)
|+.|+ |||++||.+|||+.++++|+|||++ |+|++|.+|..+||..|..+++...+....+.. ......+++...
T Consensus 102 fNy~a--KKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~i~~p~~~~t~l~~~-~~~~~k~~~l~~ 178 (574)
T KOG1159|consen 102 FNYAA--KKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKGIYPPYRPETDLIPT-VQITTKYSLLEL 178 (574)
T ss_pred hhHHH--HHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHhhcCCCCCcccCCCc-ccccchhhhhhc
Confidence 88888 9999999999999999999999986 999999999999999999887622221111111 122333443332
Q ss_pred cCCCccccccccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHH
Q 010480 84 DNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 163 (509)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~ 163 (509)
..... .+ ........+....++++.|+++|+.+|+|+|||++|+++++.+.|+|||++.|+|.|+++.|+++
T Consensus 179 ~~~~~------~~--d~~~v~~~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~F 250 (574)
T KOG1159|consen 179 GKASD------FS--DSDIVLEPQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRF 250 (574)
T ss_pred ccccc------CC--cchhhhccccccccchhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHH
Confidence 21100 00 00111111222237999999999999999999999999988999999999999999999999999
Q ss_pred HHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCc
Q 010480 164 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASP 242 (509)
Q Consensus 164 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~ 242 (509)
++.+||++++...+.....+ ..+..| .+| |+|+++++++|+|++++|+++||+.|++|++|+.|||+|++++|+
T Consensus 251 ie~~gl~~~~~~~l~~~s~~----~~~~~~-~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~ 325 (574)
T KOG1159|consen 251 IEYLGLDEDQLKPLKISSND----RSSPLP-LLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASA 325 (574)
T ss_pred HHHcCCChhhccccccccCc----cccccc-ccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccc
Confidence 99999999876655533221 112223 477 999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCc
Q 010480 243 AGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL 322 (509)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~ 322 (509)
+|.++|++|+.+++||++|||++|+|+++|+++++++ +|.++||+|||||+|..+ .++|+|++|.|.|...+.|.|+
T Consensus 326 qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~-~P~IrPR~fSIas~~~~~--~leL~VAiV~ykT~l~~pRrGl 402 (574)
T KOG1159|consen 326 QGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDL-LPVIRPRAFSIASSPGAH--HLELLVAIVEYKTILKEPRRGL 402 (574)
T ss_pred cchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHh-ccccccceeeeccCCCCC--ceeEEEEEEEEeeeccccccch
Confidence 9999999999999999999999999999999999987 599999999999999864 4999999999999999999999
Q ss_pred CchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCC
Q 010480 323 CSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 402 (509)
Q Consensus 323 ~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~ 402 (509)
||+||+++.+++. +++.++.|.+.+|.+.+.|+||||+|||||||||+++++..++. ....||||||++
T Consensus 403 CS~wl~sL~~g~~------i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~~-----~~~~lFfGCR~K 471 (574)
T KOG1159|consen 403 CSNWLASLKPGDE------IPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQGD-----KENVLFFGCRNK 471 (574)
T ss_pred hHHHHhhcCCCCe------EEEEEecCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhcc-----CCceEEEecccC
Confidence 9999999998764 78999999999998889999999999999999999999987542 456999999999
Q ss_pred CCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 403 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 403 ~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+.||+|.+||.++...+ .+.|||||++.|.||||.|++.++.+|+++ +.++.|||||++..|..+|.++|.+|..
T Consensus 472 ~~Df~y~~eW~~~~~~~----~~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~ 547 (574)
T KOG1159|consen 472 DKDFLYEDEWTELNKRA----FHTAFSRDQEQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVG 547 (574)
T ss_pred Cccccccchhhhhhcch----hhhhcccccccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhh
Confidence 99999999999887664 345999999999999999999999999988 4899999999998999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 482 EQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 482 ~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++++.+.|.|. |++.|++.+||+.|+|
T Consensus 548 ~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 548 KEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred hhcCCChHHHH-HHHHHHHhccccccCC
Confidence 99999877777 9999999999999999
|
|
| >KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-91 Score=737.80 Aligned_cols=497 Identities=45% Similarity=0.765 Sum_probs=419.7
Q ss_pred cccccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEE
Q 010480 2 TTFGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVV 81 (509)
Q Consensus 2 ~~~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (509)
+..|||++| +.+|++|++|||+|++..|+|||+.++|++|..|++.+|+++++.+..+......+.. ........
T Consensus 141 ~y~~f~~~a--~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w~~~~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~ 215 (645)
T KOG1158|consen 141 TYEHFNAFA--KLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTWKKPLLPELCETFSLEEDEATKEDE---TIRQYRTW 215 (645)
T ss_pred chhhhHHHH--HHHHHHHHHhhhhhhhccccccccccchhHHHHHHHHHhHhhhheeeeccccccCCcc---cccccccC
Confidence 357999999 7799999999999999999999999999999999999999999887644221000000 00000000
Q ss_pred EecCCCccccc--cccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHH
Q 010480 82 FYDNADASVGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSET 159 (509)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~ 159 (509)
........... ..........+.+..+|+.+.++.++.|..+.+.++++|++++..+++++|+||||++|+|+|+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~ 295 (645)
T KOG1158|consen 216 TPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDEL 295 (645)
T ss_pred cCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHH
Confidence 00000000000 0000111223445678889999999999988899999999999988899999999999999999999
Q ss_pred HHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHH
Q 010480 160 VEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRH 238 (509)
Q Consensus 160 V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~ 238 (509)
|+.++++|+++++..+.++....+.+.......+.|++ |+|++++|++|+||+++|++++++.||+||+|+.||++|+.
T Consensus 296 V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~ 375 (645)
T KOG1158|consen 296 VDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEI 375 (645)
T ss_pred HHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHH
Confidence 99999999999876666554333211011245677888 99999999999999999999999999999999999999999
Q ss_pred hcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCC-c
Q 010480 239 LASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-R 317 (509)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~-~ 317 (509)
|++++|..+|..|+....+|++|||++||++++|+.+++++ +|.++||+|||||||..+++++++++.++.+.++.| +
T Consensus 376 L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~-lp~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~ 454 (645)
T KOG1158|consen 376 LSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLEL-LPRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGP 454 (645)
T ss_pred HhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHh-CccccccccccccCcccCCCEEEEEEEEeeeccCCCCC
Confidence 99999999999999999999999999999999999999987 599999999999999999999999999998888775 7
Q ss_pred cccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcC--CCCCeEE
Q 010480 318 VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA--ELGPSLL 395 (509)
Q Consensus 318 ~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~--~~~~~~L 395 (509)
.+.|+||+||.++.+++... .++.++...|++|.|+.+|+||||+||||||||||+|++..+++.+. ..+ +||
T Consensus 455 ~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~L 529 (645)
T KOG1158|consen 455 KRYGVCSNWLSNLKPGEKVP----NPVPVGKSMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWL 529 (645)
T ss_pred ccceehhhhHHhcCCccccC----cceeecccceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEE
Confidence 77899999999998876631 13556678999999999999999999999999999999998876553 224 899
Q ss_pred EEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCC-CCcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHH
Q 010480 396 FFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVH 473 (509)
Q Consensus 396 ~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~-~~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~ 473 (509)
|||||+.+.|++|++||+++.+.+.++++..||||++ +.+.||||++++.++.||++| .++++|||||++++|+++|.
T Consensus 530 f~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~ 609 (645)
T KOG1158|consen 530 FFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQ 609 (645)
T ss_pred EEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHH
Confidence 9999999999999999999999999999999999998 789999999999999999998 56999999999766999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 474 RTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 474 ~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++|.+|+.+.+++++++|.+++++|++++||++|||
T Consensus 610 ~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 610 DALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred HHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 999999999999999999999999999999999999
|
|
| >PRK10953 cysJ sulfite reductase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-84 Score=698.64 Aligned_cols=441 Identities=30% Similarity=0.510 Sum_probs=377.2
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEe
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFY 83 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (509)
-+||+|| |+||+||++|||+|++++|.+|. ++|++|++|++++|++|.+.++.... +... .. .
T Consensus 159 ~~Fc~~~--k~ld~rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~~~~~~~~~----~~~~---~~------~ 221 (600)
T PRK10953 159 EFFCQAG--KDFDSKLAELGAERLLDRVDADV--EYQAAASEWRARVVDALKSRAPAVAA----PSQS---VA------T 221 (600)
T ss_pred HHHHHHH--HHHHHHHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHHhhcCCccc----cccc---cc------c
Confidence 4799999 99999999999999999986664 58999999999999999876532100 0000 00 0
Q ss_pred cCCCccccccccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHH
Q 010480 84 DNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 163 (509)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~ 163 (509)
.... ......++..+|+.|+|++|++||.++++|+||||+|++++++++|+|||+|+|+|.|++++|+++
T Consensus 222 ~~~~----------~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~ 291 (600)
T PRK10953 222 GAVN----------EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEL 291 (600)
T ss_pred cccc----------ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHH
Confidence 0000 000123556789999999999999999999999999999888999999999999999999999999
Q ss_pred HHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCcc
Q 010480 164 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPA 243 (509)
Q Consensus 164 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~ 243 (509)
|++||+++++.+.+. + .++|++++|++|+||+.+ ++.+|+.++.++.++. |+++.+
T Consensus 292 l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~~-~~~~l~~~a~~~~~~~----l~~~~~-- 347 (600)
T PRK10953 292 VELLWLKGDEPVTVD-----G------------KTLPLAEALQWHFELTVN-TANIVENYATLTRSET----LLPLVG-- 347 (600)
T ss_pred HHHhCCCCCCeEEeC-----C------------CCCCHHHHHHHhcccCCC-cHHHHHHHHHhCCCHH----HHHHhc--
Confidence 999999999988764 1 146899999999999975 7799999999998754 444443
Q ss_pred CHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcC
Q 010480 244 GKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLC 323 (509)
Q Consensus 244 ~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~ 323 (509)
+++.+.+|+. +++++|||++|| ++++++||+++ +|+++||+|||||+|...+++++|+|+++.+.. .++.+.|.|
T Consensus 348 ~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~l-l~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~ 422 (600)
T PRK10953 348 DKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGL-LRPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGA 422 (600)
T ss_pred CHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHh-CCCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceE
Confidence 5567778864 689999999998 68999999986 499999999999999877899999999987763 577889999
Q ss_pred chhhhhcCCCccCCCCceeeEEEec-CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCC
Q 010480 324 STWMKNSLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 402 (509)
Q Consensus 324 S~~L~~~~~~~~~~~~~~v~v~~~~-g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~ 402 (509)
|+||.+..+.|+ .++|+++. +.|++|.++.+|+||||+||||||||||++++...+. .++++||||||+.
T Consensus 423 S~~L~~~l~~Gd-----~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~----~~~~~LffG~R~~ 493 (600)
T PRK10953 423 SSFLADRLEEEG-----EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGA----PGKNWLFFGNPHF 493 (600)
T ss_pred hhhhhhcCCCCC-----EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCC----CCCeEEEeeccCC
Confidence 999997444443 47888865 6899998888999999999999999999999876432 3789999999996
Q ss_pred CCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHH
Q 010480 403 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 482 (509)
Q Consensus 403 ~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 482 (509)
..|++|++||++|.+.|.+++++.+|||++.+|+||||+|.++.+.+++++.++++||||||++.|+++|.++|.+|+.+
T Consensus 494 ~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~ 573 (600)
T PRK10953 494 TEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAE 573 (600)
T ss_pred ccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHH
Confidence 66999999999999999998899999999888999999999999999999988999999999668999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 483 QGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 483 ~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++++++++|++|+++|+++|||++|||
T Consensus 574 ~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 574 FGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred cCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999999999999999999999999
|
|
| >TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-83 Score=691.95 Aligned_cols=439 Identities=33% Similarity=0.578 Sum_probs=376.5
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEec
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYD 84 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (509)
+||+|| |++|+||++|||+|++|+|.+|+ ++|++|++|++++|++|.+..+.... . +.+.+....
T Consensus 157 ~fc~~~--k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~~~~~~~~-----~------~~~~~~~~~ 221 (597)
T TIGR01931 157 FFCQTG--KDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNEQAKGSAS-----T------PSLSETPAR 221 (597)
T ss_pred HHhHHH--HHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHhhccCccC-----C------Ccceecccc
Confidence 699999 99999999999999999997775 69999999999999999765431100 0 111110000
Q ss_pred CCCccccccccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHH
Q 010480 85 NADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEAL 164 (509)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l 164 (509)
. ......++..+|+.|+|++|++||.++++++|+||+|+++++++.|+|||+|+|+|+|++++|+++|
T Consensus 222 -~-----------~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l 289 (597)
T TIGR01931 222 -S-----------QTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEIL 289 (597)
T ss_pred -c-----------ccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHH
Confidence 0 0112235567899999999999999999999999999999889999999999999999999999999
Q ss_pred HHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccC
Q 010480 165 SLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG 244 (509)
Q Consensus 165 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~ 244 (509)
++||+++++.+++. + .++|++++|++|+||+. +++.||+.||++++|+..++ +.+ +
T Consensus 290 ~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~-~~~~~l~~la~~~~~~~l~~----~~~--~ 345 (597)
T TIGR01931 290 KLLNLDPDEKVTIG-----G------------KTIPLFEALITHFELTQ-NTKPLLKAYAELTGNKELKA----LIA--D 345 (597)
T ss_pred HHhCCCCCCeEEeC-----C------------CCcCHHHHHHhceeCCC-CCHHHHHHHHHhcCCHHHHH----Hhc--C
Confidence 99999999988763 1 15699999999999998 58999999999999986544 333 5
Q ss_pred HHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCc
Q 010480 245 KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCS 324 (509)
Q Consensus 245 ~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S 324 (509)
++.|.+|+. +++++|||++|| +++++|||+++ +|++.||+|||||+|..++++++|+|++|.+. ..++.+.|.||
T Consensus 346 ~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~l-l~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~-~~~~~~~G~~S 420 (597)
T TIGR01931 346 NEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISL-LRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQ-AHGRARLGGAS 420 (597)
T ss_pred HHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHh-CcccCCceeeeccCcccCCCEEEEEEEEEEec-CCCCccccchh
Confidence 677888885 689999999999 89999999976 48899999999999987778999999998765 45778899999
Q ss_pred hhhhh-cCCCccCCCCceeeEEEe-cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCC
Q 010480 325 TWMKN-SLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 402 (509)
Q Consensus 325 ~~L~~-~~~~~~~~~~~~v~v~~~-~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~ 402 (509)
+||.+ +.+| + .++|+++ +|.|++|.++.+|+||||+||||||||||++++...+. .++++||||||+.
T Consensus 421 ~~L~~~l~~G-d-----~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~----~g~~~LffG~R~~ 490 (597)
T TIGR01931 421 GFLAERLKEG-D-----TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA----KGKNWLFFGNPHF 490 (597)
T ss_pred HHHHhhCCCC-C-----EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC----CCCEEEEECCCCC
Confidence 99998 5544 3 4788876 46899998888999999999999999999999876432 3789999999995
Q ss_pred CCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHH
Q 010480 403 KMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 482 (509)
Q Consensus 403 ~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 482 (509)
..|++|++||++|.+.+.+++++++|||++..++||||+|.++.+.+++++..+++|||||+++.|+++|.++|.+++.+
T Consensus 491 ~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~ 570 (597)
T TIGR01931 491 TTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAK 570 (597)
T ss_pred CcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHH
Confidence 55999999999999999888899999998778999999999988889888877899999994389999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 483 QGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 483 ~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++++++++|++|+++|+++|||++|||
T Consensus 571 ~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 571 EGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred hCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999999999999999999999999
|
This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. |
| >COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-83 Score=679.59 Aligned_cols=441 Identities=37% Similarity=0.644 Sum_probs=392.9
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEec
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYD 84 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (509)
.||.+| |.+|++|.++||.|++++++||.+ +++.+..+|...+++.+...++..... ...+ ...
T Consensus 146 ~~~~~~--k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~~~~~~~~~--~~~~-----------~~~ 209 (587)
T COG0369 146 FFCQAG--KDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKSKFPGQEAA--PAQV-----------ATS 209 (587)
T ss_pred hhhccc--hhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHhhccccccc--cccc-----------cch
Confidence 599999 999999999999999999999998 999999999999999998766422110 0000 000
Q ss_pred CCCccccccccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHH
Q 010480 85 NADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEAL 164 (509)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l 164 (509)
. .. ...+....++.+.+..|++|+..+++++++|++|++++++++|+|||+|+|||+|+++.|+.+|
T Consensus 210 ~------------~~-~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l 276 (587)
T COG0369 210 P------------QS-ESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFL 276 (587)
T ss_pred h------------cc-cccccccCcceeEeeccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHH
Confidence 0 00 1123345678999999999999999999999999999889999999999999999999999999
Q ss_pred HHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccC
Q 010480 165 SLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG 244 (509)
Q Consensus 165 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~ 244 (509)
+.+||+++..+.+. + .++++.++|++|+|++..| |.|+..|+.|+.++..++.|+.++
T Consensus 277 ~~~gl~~~~~v~~~-----~------------~~~~~~~~l~~~~e~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~---- 334 (587)
T COG0369 277 ELLGLDPEEPVTVD-----G------------ETLPLVEALKSHFEFTSAP-KSLLENLAHFAGQEELRRLLEQLD---- 334 (587)
T ss_pred HHcCCCCCceeccC-----C------------CcchHHHHHHHheecccch-HHHHHHHHHhcCCHHHHHHHHhhh----
Confidence 99999998766331 1 1678999999999999999 999999999999999999999987
Q ss_pred HHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCc
Q 010480 245 KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCS 324 (509)
Q Consensus 245 ~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S 324 (509)
..+|+.|.. +++++|+|++||++++|+++|++. +|+++||.|||||+|..+++++||||.+|.+... ++.+.|+||
T Consensus 335 ~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~-l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS 410 (587)
T COG0369 335 IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDL-LPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCS 410 (587)
T ss_pred hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHh-CccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccch
Confidence 456777775 799999999999999999999986 5999999999999999999999999999988877 458899999
Q ss_pred hhhhhcCCCccCCCCceeeEEEecC-CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCC
Q 010480 325 TWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRK 403 (509)
Q Consensus 325 ~~L~~~~~~~~~~~~~~v~v~~~~g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~ 403 (509)
+||+++...|+ .++|+++.+ +|++|.++.+||||||+||||||||+|+|++...+.. +++|||||||+.+
T Consensus 411 ~~L~~~~~~g~-----~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~----gk~wLfFG~R~~~ 481 (587)
T COG0369 411 GYLADLLEEGD-----TIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAANGAE----GKNWLFFGCRHFT 481 (587)
T ss_pred HHHHhhhcCCC-----eEEEEeccCCccccCCCCCCceEEEcCCCCchhHHHHHHHHHhcccc----CceEEEecCCCCc
Confidence 99999988544 488999876 8999999889999999999999999999999886533 6899999999988
Q ss_pred CccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHc
Q 010480 404 MDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQ 483 (509)
Q Consensus 404 ~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~ 483 (509)
.||+|++||++|.+.|.++++..||||++.+|.||||+|+++++.|++++.++++|||||++..|.++|.++|.+|+.+.
T Consensus 482 ~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~ 561 (587)
T COG0369 482 EDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKE 561 (587)
T ss_pred cchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999888999999966999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 484 GSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 484 ~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++++.|+|.+|+++|++++||++|||
T Consensus 562 g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 562 GGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CCCcHHHHHHHHHHHHhcCceeeecC
Confidence 99999999999999999999999999
|
|
| >cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-81 Score=656.09 Aligned_cols=393 Identities=52% Similarity=0.932 Sum_probs=352.9
Q ss_pred CCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCC-CCcEEEEecCCCCCC
Q 010480 107 QHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDGT 185 (509)
Q Consensus 107 ~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~-~~~~~~~~~~~~~~~ 185 (509)
.+|+.|+|++|++||++ ++|+++||+||+++++++|+|||+|+|+|+|+++.|+++|++||++ +++.+.+.....
T Consensus 3 ~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~--- 78 (416)
T cd06204 3 KNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE--- 78 (416)
T ss_pred CCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc---
Confidence 46889999999999998 9999999999998778999999999999999999999999999999 899888864321
Q ss_pred CCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHh
Q 010480 186 PLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 264 (509)
Q Consensus 186 ~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~ 264 (509)
..+.+.|+| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|.+|++ +|.++|.+|+.+.++|++|||.
T Consensus 79 ---~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 79 ---PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ---ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 122345788 99999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCCC---CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCcc------
Q 010480 265 EFPSAK---PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK------ 335 (509)
Q Consensus 265 ~fps~~---~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~------ 335 (509)
+||+++ +|++.|++.+ |+++||+|||||+|..++++++|||+++.+.++.++.+.|+||+||+++.++..
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999874 999999999999998778999999999988888888899999999999875110
Q ss_pred ---------CCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCcc
Q 010480 336 ---------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 406 (509)
Q Consensus 336 ---------~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ 406 (509)
...+..++++++.|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|+
T Consensus 234 ~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred ccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCccc
Confidence 00133588999999999998778999999999999999999999875432233347899999999984499
Q ss_pred ccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcc-hHHHHHHHHHHHHHHcCC
Q 010480 407 IYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS-MARDVHRTLHTIVQEQGS 485 (509)
Q Consensus 407 ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~-M~~~v~~~L~~i~~~~~~ 485 (509)
+|++||++|++.+.+++++++|||++..++|||++|.+..+.+++++.++++||+||| +. |+++|.++|.++++++++
T Consensus 314 ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp-~~~M~~~V~~~L~~i~~~~~~ 392 (416)
T cd06204 314 IYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGD-AKNMARDVEKTLLEILAEQGG 392 (416)
T ss_pred chHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECC-cccchHHHHHHHHHHHHHhCC
Confidence 9999999999988878899999998777899999999888888887766799999999 55 999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 486 LDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 486 ~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
+++++|++|+++|+++|||++|||
T Consensus 393 ~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 393 MTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo |
| >cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-80 Score=640.32 Aligned_cols=381 Identities=39% Similarity=0.710 Sum_probs=339.8
Q ss_pred EeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCC--CCcEEEEecCCCCCCCCCCCC
Q 010480 114 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 191 (509)
Q Consensus 114 v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~~~~ 191 (509)
|.+|++||+++++++++||+|+++++++.|+|||+|+|+|+|++++|++++++||++ ++..++++....... .+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 678999999999999999999998788999999999999999999999999999999 788888864221111 1134
Q ss_pred CCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCC
Q 010480 192 LPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAK 270 (509)
Q Consensus 192 ~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~ 270 (509)
++.++| |+|++++|++||||+++|+++||+.||+||+|++||++|.+|++.+|+++|.+|+.+.++|++|||++||+++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 667888 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcC-----CCccCCCCceeeEE
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 345 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~-----~~~~~~~~~~v~v~ 345 (509)
+|++.+++.+ |+++||+|||||+|..+++.++|+|+++.+.+ .|+||+||+++. +|+ .+.+.
T Consensus 160 ~pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~ 226 (398)
T cd06203 160 PPLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFY 226 (398)
T ss_pred CCHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEE
Confidence 9999999875 99999999999999866789999999885432 599999999987 543 37788
Q ss_pred Ee-cCCCCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHh--hcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc
Q 010480 346 VR-QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQE--AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 421 (509)
Q Consensus 346 ~~-~g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~--~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~ 421 (509)
++ .|.|.+|.+ ..+|+||||+|||||||+||++++..... .+...++++||||||+++.|++|++||++|++.+.+
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~ 306 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL 306 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC
Confidence 74 578999876 67899999999999999999999876321 122347999999999994599999999999999998
Q ss_pred CeEEEEEecCCC---CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010480 422 SQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 497 (509)
Q Consensus 422 ~~~~~a~Sr~~~---~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 497 (509)
++++++|||++. .++|||+.|.++.+.+++++ ..++.||||||++.|+++|+++|.+|+.+++++++++|++|+++
T Consensus 307 ~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 307 TRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred ceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 889999999876 58999999999988888876 46899999999678999999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 010480 498 LQMTGRYLRDVW 509 (509)
Q Consensus 498 l~~~~Ry~~dvw 509 (509)
|+++|||++|||
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
|
In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme |
| >cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-79 Score=635.90 Aligned_cols=378 Identities=43% Similarity=0.785 Sum_probs=343.1
Q ss_pred EeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCC
Q 010480 114 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 193 (509)
Q Consensus 114 v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (509)
|++|++||.++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+++.... ..+.+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~-------~~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNE-------QQRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccc-------ccccC
Confidence 57899999999999999999999878899999999999999999999999999999999998886422 11234
Q ss_pred CCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 010480 194 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 272 (509)
Q Consensus 194 ~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~~ 272 (509)
.++| |+|++++|++||||+++|++.+|+.||.||+|+++|++|.+|++.++.+.|.+| .+++++|+|++||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 5788 999999999999999999999999999999999999999999999999999888 789999999999999999
Q ss_pred hhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCC
Q 010480 273 LGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 352 (509)
Q Consensus 273 ~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~ 352 (509)
++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||+++.+|+ .+.|.++.|.|.
T Consensus 152 ~~~ll~~-lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLEL-CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFK 224 (382)
T ss_pred HHHHHHh-CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCccc
Confidence 9999987 499999999999999866789999999998888778888999999999876654 478999999999
Q ss_pred CCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCC
Q 010480 353 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 432 (509)
Q Consensus 353 lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~ 432 (509)
+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|++|++||++|++.+.+++++++|||++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQ 304 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCC
Confidence 99877899999999999999999999987653333345899999999999449999999999999998889999999998
Q ss_pred CCcccchhhHhhcHHHHHHHHhCC-CEEEEecCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 433 PTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 433 ~~~~yvq~~i~~~~~~v~~~l~~~-~~iyvCGp~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
..++|||+++.+..+.+++++.++ +.|||||| +. |+++|.++|.+++.+++++++++|++|+++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 889999999999888888877544 49999999 66 999999999999999999999999999999999999999999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe |
| >cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-79 Score=632.58 Aligned_cols=386 Identities=41% Similarity=0.736 Sum_probs=336.9
Q ss_pred EeeeeccCCCCCCCcEEEEEEEeCC-CCCccCCCCeeEEcccCCHHHHHHHHHHhCCC--CCcEEEEecCCCCCCCCC--
Q 010480 114 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLG-- 188 (509)
Q Consensus 114 v~~~~~L~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~-- 188 (509)
|+.|++|+++++.|+|+||+||+++ +++.|+|||+|+|+|+|+++.|+++|++||+. .+..+.++.........+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 6789999999999999999999986 68999999999999999999999999999984 467777764322111100
Q ss_pred CCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC
Q 010480 189 KSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 267 (509)
Q Consensus 189 ~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp 267 (509)
....+.+++ |+|++++|++|+||+++|++.+|+.||.||+|+.+|++|++|++ +.+.|.+|+.+.++|++|||++||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 011223444 89999999999999999999999999999999999999999997 788999999999999999999999
Q ss_pred CCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCC--CccccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 268 SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 268 s~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~--~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
++++|++.|++. +|+++||+|||||+|..+++.++|+|+++.+.++. ++.+.|+||+||+++.+|+ .+.|+
T Consensus 160 s~~~~~~~ll~~-lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQ-LPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPCF 232 (406)
T ss_pred cCCCCHHHHHHh-CcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEEE
Confidence 999999999987 59999999999999987789999999998776543 4467899999999887754 36777
Q ss_pred Eec-CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHh----hcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC
Q 010480 346 VRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE----AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 420 (509)
Q Consensus 346 ~~~-g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~----~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~ 420 (509)
++. +.|.+|.+..+|+||||+|||||||||||+++..... .+...++++||||||+++.|++|++||++|.+.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 764 5899998878999999999999999999999864321 12235899999999999559999999999999999
Q ss_pred cCeEEEEEecCCC-CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010480 421 LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNL 498 (509)
Q Consensus 421 ~~~~~~a~Sr~~~-~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 498 (509)
+++++++|||++. .++|||+.|.++.+.+++++ ..+++|||||| +.|+++|.++|.+|++++++++.++|++|+++|
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l 391 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKL 391 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8889999999864 58999999999988999877 67899999999 689999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 010480 499 QMTGRYLRDVW 509 (509)
Q Consensus 499 ~~~~Ry~~dvw 509 (509)
+++|||++|||
T Consensus 392 ~~~gRy~~dvw 402 (406)
T cd06202 392 RDENRYHEDIF 402 (406)
T ss_pred HHcCCeEEEec
Confidence 99999999999
|
The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. |
| >cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=613.57 Aligned_cols=375 Identities=36% Similarity=0.617 Sum_probs=331.0
Q ss_pred EEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCC
Q 010480 113 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 192 (509)
Q Consensus 113 ~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (509)
+|+.|++||+++++|+++||+|++++ +++|+|||+|+|+|+|+++.|+++|++||+++++.++++.... ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~--------~~ 71 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS--------AT 71 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC--------CC
Confidence 47899999999999999999999974 8999999999999999999999999999999999998874221 22
Q ss_pred CCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCC
Q 010480 193 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKP 271 (509)
Q Consensus 193 ~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~ 271 (509)
+.|++ |+|++++|++|+||+++|+++||+.||+||+|+++|++|..++ +++|.+++..+++|++|||++||++++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~ 147 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIAL 147 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCC
Confidence 34567 8999999999999999999999999999999999999999885 357889999999999999999999999
Q ss_pred ChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCC-ccccCcCchhhhhcCCCccCCCCceeeEE--Eec
Q 010480 272 PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIF--VRQ 348 (509)
Q Consensus 272 ~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~-~~~~G~~S~~L~~~~~~~~~~~~~~v~v~--~~~ 348 (509)
|++||++++ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|.||+||+++.+|+. +.+. .+.
T Consensus 148 ~~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~------v~v~i~~p~ 220 (384)
T cd06206 148 PLATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDS------IHVSVRPSH 220 (384)
T ss_pred CHHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCe------EEEEEecCC
Confidence 999999875 99999999999999766789999999987665544 5678999999998766543 5654 346
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+.+.|++|++||++|++.+.+ ++++++
T Consensus 221 g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~ 299 (384)
T cd06206 221 SAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAY 299 (384)
T ss_pred CccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEe
Confidence 8899987778999999999999999999999876433233347899999999994499999999999986654 899999
Q ss_pred ecCCCC-cccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCC
Q 010480 429 SREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGR 503 (509)
Q Consensus 429 Sr~~~~-~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~~R 503 (509)
||++.. ++|||++|.+..+.+++++.+++.|||||| ++|+++|.++|.+++.+++ +++.++|++|+++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998654 899999998888888887767899999999 6799999999999999999 9999999999999999999
Q ss_pred eEEeeC
Q 010480 504 YLRDVW 509 (509)
Q Consensus 504 y~~dvw 509 (509)
|++|||
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
|
NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la |
| >cd06199 SiR Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-74 Score=587.27 Aligned_cols=356 Identities=40% Similarity=0.670 Sum_probs=315.0
Q ss_pred EEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCC
Q 010480 113 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 192 (509)
Q Consensus 113 ~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (509)
+|++|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+.+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 36789999999999999999999988889999999999999999999999999999999887642
Q ss_pred CCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC--CC
Q 010480 193 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP--SA 269 (509)
Q Consensus 193 ~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp--s~ 269 (509)
++| ++|++++|++|+||+++ .++.|+.||+++.++++|+. +|++.|.+ +++++|||++|| ++
T Consensus 66 --~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~ 130 (360)
T cd06199 66 --VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPA 130 (360)
T ss_pred --CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCC
Confidence 124 78999999999999987 45558899999988888876 57777754 479999999999 99
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec-
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ- 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~- 348 (509)
++|++||++++ |+++||+|||||+|..+++.++|+|+++.+.++ ++.+.|.||+||+++.+.|+ .+.++++.
T Consensus 131 ~~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd-----~v~v~~~~~ 203 (360)
T cd06199 131 RLTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGD-----TVPVFVQPN 203 (360)
T ss_pred CCCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCC-----EEEEEEecC
Confidence 99999999864 999999999999998767899999998876653 46678999999999764443 47888754
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|++|.+..+|+||||+|||||||+||++++..... .++++||||||+++.|++|++||++|++.+.+++++++|
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~ 279 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA----KGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAF 279 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEE
Confidence 5899998778999999999999999999999876432 378999999999855999999999999988888899999
Q ss_pred ecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEee
Q 010480 429 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 508 (509)
Q Consensus 429 Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 508 (509)
||++..++|||++|.++.+.+++++..+++||||||...|+++|+++|.+|++++++++.++|++|+++|+++|||++||
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99987889999999998888888776789999999943899999999999999999999999999999999999999999
Q ss_pred C
Q 010480 509 W 509 (509)
Q Consensus 509 w 509 (509)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. |
| >PRK06214 sulfite reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-73 Score=598.42 Aligned_cols=369 Identities=37% Similarity=0.651 Sum_probs=321.7
Q ss_pred CcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCC
Q 010480 102 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDK 181 (509)
Q Consensus 102 ~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~ 181 (509)
..++.++|+.++|+.|++||+++++++++||+||+++++++|+|||+|+|+|.|++++|+++|++||++++..+
T Consensus 161 ~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~------ 234 (530)
T PRK06214 161 LGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI------ 234 (530)
T ss_pred CccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc------
Confidence 34567889999999999999999999999999999988999999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHH
Q 010480 182 EDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 261 (509)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~d 261 (509)
.++|++++|++|+||+++| +.+|+.|+.+++++. |++|+.|++.+..+... ...+++|
T Consensus 235 ---------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~~-----~~~~vld 292 (530)
T PRK06214 235 ---------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGDA-----ATLDVLA 292 (530)
T ss_pred ---------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhhh-----hhCcHHH
Confidence 1569999999999999976 789999999998766 88888887543332211 2468999
Q ss_pred HHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCce
Q 010480 262 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 341 (509)
Q Consensus 262 vl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 341 (509)
+|++||++++|+++|++. +|+++||+|||||+|..++++++|+|+++.+.. .++.+.|+||+||++..+.|+ .
T Consensus 293 vL~~fp~~~~~~~~lle~-lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd-----~ 365 (530)
T PRK06214 293 ALEKFPGIRPDPEAFVEA-LDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGT-----R 365 (530)
T ss_pred HHHhCCCCCCCHHHHHhh-cCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCC-----E
Confidence 999999999999999986 499999999999999866789999999987663 467788999999986444443 3
Q ss_pred eeEEEec-CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC
Q 010480 342 APIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 420 (509)
Q Consensus 342 v~v~~~~-g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~ 420 (509)
+.|+++. +.|++|.+..+|+||||+||||||||||++++..... .++++||||||+.+.|++|++||++|.+.+.
T Consensus 366 V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~----~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~ 441 (530)
T PRK06214 366 VRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA----PGRNWLFFGHQRSATDFFYEDELNGLKAAGV 441 (530)
T ss_pred EEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC----CCCeEEEEEecCChhhhHHHHHHHHHHHhCC
Confidence 6777753 3499997777899999999999999999999876432 3789999999876669999999999999998
Q ss_pred cCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 010480 421 LSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQM 500 (509)
Q Consensus 421 ~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~ 500 (509)
+++++++|||++..++|||++|.++...+++++.++++||||||++.|.++|+++|.+|+.+++++++++|++|+++|++
T Consensus 442 l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~ 521 (530)
T PRK06214 442 LTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKK 521 (530)
T ss_pred ceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 88899999999888999999999988888888877899999999556889999999999999999999999999999999
Q ss_pred CCCeEEeeC
Q 010480 501 TGRYLRDVW 509 (509)
Q Consensus 501 ~~Ry~~dvw 509 (509)
+|||++|||
T Consensus 522 ~gRY~~Dvw 530 (530)
T PRK06214 522 AGRYQADVY 530 (530)
T ss_pred CCCEEEecC
Confidence 999999999
|
|
| >PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=378.62 Aligned_cols=217 Identities=45% Similarity=0.812 Sum_probs=183.9
Q ss_pred cccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCC
Q 010480 103 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 182 (509)
Q Consensus 103 ~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 182 (509)
+++.++|+.|+|++|++|++++++|+|+||+|+++++++.|+|||+|+|+|+|+++.|++++++||+++++.|.+.....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 35567899999999999999999999999999999889999999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHH
Q 010480 183 DGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 261 (509)
Q Consensus 183 ~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~d 261 (509)
. .....++| ++|++++|++|+||+++|++.||+.||.|++|++||++|++|++.+|++.|.+|+.+.++|++|
T Consensus 82 ~------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~d 155 (219)
T PF00667_consen 82 N------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLD 155 (219)
T ss_dssp T------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHH
T ss_pred c------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHH
Confidence 2 23456788 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchh
Q 010480 262 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW 326 (509)
Q Consensus 262 vl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~ 326 (509)
+|.+||++++|+++||++ +|+++||+|||||||..+++.++|||++|.+.++.|+.+.|+||+|
T Consensus 156 il~~fps~~~pl~~ll~~-lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 156 ILEDFPSCKPPLEELLEL-LPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHSTTBTC-HHHHHHH-S-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HHhhCcccCCCHHHhhhh-CCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999987 5999999999999999999999999999999889999999999997
|
Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B .... |
| >PLN03115 ferredoxin--NADP(+) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=337.43 Aligned_cols=272 Identities=24% Similarity=0.457 Sum_probs=222.0
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 183 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 183 (509)
|..++|+.++|+.|.+++.++...+++||+|+.+ ..+.|+||..++|.|+..
T Consensus 85 ~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~-~~~~f~~GQfv~I~~~g~--------------------------- 136 (367)
T PLN03115 85 FRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTE-GEIPYREGQSIGVIPDGI--------------------------- 136 (367)
T ss_pred eccCCCeEEEEEeecccccCCCCCceEEEEEcCC-CCCCcCCCCEEEEEcCCc---------------------------
Confidence 5567899999999999999888889999999876 468999999999855310
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 010480 184 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 263 (509)
Q Consensus 184 ~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl 263 (509)
|.. |
T Consensus 137 --------------------------~~~-------------------------------g------------------- 140 (367)
T PLN03115 137 --------------------------DKN-------------------------------G------------------- 140 (367)
T ss_pred --------------------------CCC-------------------------------C-------------------
Confidence 000 0
Q ss_pred hhCCCCCCChhhhHHhhcCCCCCccccccCCCCC---CCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCc
Q 010480 264 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 340 (509)
Q Consensus 264 ~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 340 (509)
.+..+|+|||||+|.. .++.++|+|+.+.+.+..|....|.||+||+++.+|+.
T Consensus 141 ------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~----- 197 (367)
T PLN03115 141 ------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAE----- 197 (367)
T ss_pred ------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCE-----
Confidence 1235699999999842 24689999998867666667788999999999777653
Q ss_pred eeeEEEecCCCC-CCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHHHHc
Q 010480 341 WAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQS 418 (509)
Q Consensus 341 ~v~v~~~~g~F~-lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~ 418 (509)
+.|.+|.|.|. +|.++.+|+||||+|||||||+||++++....... ...++++||||||+.+ |++|.+||++|++.
T Consensus 198 -V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~~ 275 (367)
T PLN03115 198 -VKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEK 275 (367)
T ss_pred -EEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHHh
Confidence 77888888765 45566789999999999999999999876532211 1136899999999997 99999999999887
Q ss_pred CC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHH
Q 010480 419 GA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAE 492 (509)
Q Consensus 419 ~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~ 492 (509)
.. +++++.++||++. .++|||++|.++.+.+++++ ..+++|||||| ++|+++|.++|.++....+ + ++.
T Consensus 276 ~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~~ 350 (367)
T PLN03115 276 APENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DWF 350 (367)
T ss_pred CCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cHH
Confidence 54 6789999999753 57899999999888888876 35689999999 8999999999999998875 3 578
Q ss_pred HHHHHHHHCCCeEEeeC
Q 010480 493 SMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 493 ~~~~~l~~~~Ry~~dvw 509 (509)
+++++|+++|||+.|||
T Consensus 351 ~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 351 EYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHCCCeEEecC
Confidence 99999999999999998
|
|
| >cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=311.30 Aligned_cols=232 Identities=48% Similarity=0.881 Sum_probs=196.1
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
...+|||+.+.+|. ..+|+|||||+|...++.++|+|+.+.+..+.+..+.|.+|+||+++.+|+ .+.+.++.
T Consensus 31 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~ 104 (267)
T cd06182 31 KYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRP 104 (267)
T ss_pred ccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEec
Confidence 45689999765443 468999999999754689999999886655555667799999999876654 37788888
Q ss_pred C-CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCC-CCccccHHHHHHHHHcCCcCeEEE
Q 010480 349 S-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR-KMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 349 g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~-~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
| .|.++.+..+|+||||+|||||||+||+++++.....+...++++||||+|+. + |++|.++|++|++.+.+++++.
T Consensus 105 G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~-d~~~~del~~~~~~~~~~~~~~ 183 (267)
T cd06182 105 APSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFAS-DYLYREELQEALKDGALTRLDV 183 (267)
T ss_pred CCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcc-cccHHHHHHHHHhCCCcceEEE
Confidence 8 89998776789999999999999999999987632111223789999999999 6 9999999999999887889999
Q ss_pred EEecCCCC-cccchhhHhhcHHHHHHHHhCCCEEEEecCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCe
Q 010480 427 AFSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRY 504 (509)
Q Consensus 427 a~Sr~~~~-~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry 504 (509)
++||+... ++||++.+....+.+.+.+..++.||+||| +. |+++|.++|.+++.++++++.++|++|+++|++.|||
T Consensus 184 ~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (267)
T cd06182 184 AFSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRY 262 (267)
T ss_pred EEccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCe
Confidence 99987553 789999987776666665656679999999 78 9999999999999999999999999999999999999
Q ss_pred EEeeC
Q 010480 505 LRDVW 509 (509)
Q Consensus 505 ~~dvw 509 (509)
++|+|
T Consensus 263 ~~~~~ 267 (267)
T cd06182 263 VEDVW 267 (267)
T ss_pred EEecC
Confidence 99999
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t |
| >cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=292.45 Aligned_cols=212 Identities=33% Similarity=0.521 Sum_probs=173.4
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe-
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR- 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~- 347 (509)
..-+|||+.+.++. ..+|+|||||+|. ++.++|+|+.+... . .+.|.+|+||++..+.|+ .+.|..|
T Consensus 31 ~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~--~--~~~G~~S~~L~~~~~~Gd-----~v~i~gp~ 99 (245)
T cd06200 31 QWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA--D--GGLGLGSGWLTRHAPIGA-----SVALRLRE 99 (245)
T ss_pred CccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC--C--CCCeeechhhhhCCCCCC-----EEEEEecC
Confidence 34589999765442 5789999999985 47899998776221 1 134899999998754444 4778876
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
+|.|.++. ..+|+||||+|||||||+||++++.... .++++||||+|+.+.|++|.+||++|++.+.+++++.+
T Consensus 100 gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~-----~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~ 173 (245)
T cd06200 100 NPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG-----RHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLA 173 (245)
T ss_pred CCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc-----CCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEEE
Confidence 56798875 5689999999999999999999987532 25799999999984489999999999998888889999
Q ss_pred EecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCc-chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEE
Q 010480 428 FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK-SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLR 506 (509)
Q Consensus 428 ~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~-~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 506 (509)
+|+++..++||++.+.+..+.+.+++..+++||+||| + +|+++|.+.|.+++++ +.+++|+++|||.+
T Consensus 174 ~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~~~ 242 (245)
T cd06200 174 FSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRYRR 242 (245)
T ss_pred EccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCeEE
Confidence 9998777899999998876666655556789999999 7 9999999999999975 24899999999999
Q ss_pred eeC
Q 010480 507 DVW 509 (509)
Q Consensus 507 dvw 509 (509)
|+|
T Consensus 243 d~~ 245 (245)
T cd06200 243 DVY 245 (245)
T ss_pred ecC
Confidence 999
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD |
| >cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=288.27 Aligned_cols=189 Identities=34% Similarity=0.685 Sum_probs=157.2
Q ss_pred CccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE-ecCCCCCCCCCCCCEEEE
Q 010480 286 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMI 364 (509)
Q Consensus 286 pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~-~~g~F~lp~~~~~pii~I 364 (509)
+|+|||+|+|. .+.++|+|+.+ +.|.+|+||+++.+|+. +.+.+ ++|.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~------v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPGDT------IKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCcCE------EEEEeccCCCccCC-CCCCCEEEE
Confidence 69999999984 47899988743 45999999998766543 56665 46789886 446899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhh
Q 010480 365 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 444 (509)
Q Consensus 365 a~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~ 444 (509)
|+|||||||+||+++... .++++||||+|+.+.|++|++||++|++.+.+++++.++||++ .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANAA-------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhhc-------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 999999999999987521 2689999999998548999999999998888778888999865 47899999887
Q ss_pred cHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 445 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 445 ~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
..+.+..++..++.||+||| ++|+++|.+.|.+|+.+++ + -+.+++++|||.+|||
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 66666665666899999999 8999999999999997654 2 3888999999999998
|
coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F |
| >PLN03116 ferredoxin--NADP+ reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=298.41 Aligned_cols=226 Identities=29% Similarity=0.447 Sum_probs=175.7
Q ss_pred ChhhhHHhhcCC---------CCCccccccCCCCCC---CCeEEEEEEEEEeeCCCCc----cccCcCchhhhhcCCCcc
Q 010480 272 PLGVFFAAIVPR---------LQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGR----VHKGLCSTWMKNSLPMEK 335 (509)
Q Consensus 272 ~~~~~l~~~~p~---------~~pR~YSIaSsp~~~---~~~l~ltv~~v~~~~~~~~----~~~G~~S~~L~~~~~~~~ 335 (509)
-+|||+.+.+|. ...|+|||||+|... ...++|+|+.+.+.++... .+.|.+|+||+++.+|+
T Consensus 58 ~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd- 136 (307)
T PLN03116 58 WEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD- 136 (307)
T ss_pred ecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC-
Confidence 467777654332 147999999999532 2379999998755443211 25799999999965544
Q ss_pred CCCCceeeEEEecCCCCC-CC-CCCCCEEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEeccCCCCccccHHHH
Q 010480 336 SNDCSWAPIFVRQSNFKL-PA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDEL 412 (509)
Q Consensus 336 ~~~~~~v~v~~~~g~F~l-p~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~~el 412 (509)
.+.|..|.|.|.+ +. +..+|+||||||||||||+||+++++..... ....++++||||+|+.+ |++|.+||
T Consensus 137 -----~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL 210 (307)
T PLN03116 137 -----KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEF 210 (307)
T ss_pred -----EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHH
Confidence 3788889899876 43 4567999999999999999999998754311 11126899999999997 99999999
Q ss_pred HHHHHcCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCC
Q 010480 413 NNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 487 (509)
Q Consensus 413 ~~~~~~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~ 487 (509)
++|++.+. .++++.++||+.. .++||++.|.+..+.++..+..++.||+||| +.|++++.++|.+++.+. |+
T Consensus 211 ~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~-g~- 287 (307)
T PLN03116 211 ERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEER-GE- 287 (307)
T ss_pred HHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHc-Cc-
Confidence 99998865 5789999998643 3679999888765555554545789999999 899999999999988765 45
Q ss_pred HHHHHHHHHHHHHCCCeEEeeC
Q 010480 488 SSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 488 ~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
+|+++++.|+++|||++|||
T Consensus 288 --~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 288 --SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred --cHHHHHHHHHHcCceEEecC
Confidence 36689999999999999999
|
|
| >TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=299.23 Aligned_cols=269 Identities=24% Similarity=0.411 Sum_probs=211.1
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 183 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 183 (509)
|..++|+.++|+.+++++..+...+++||.|+.++....|+||..+.|.++..
T Consensus 137 ~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~--------------------------- 189 (411)
T TIGR03224 137 YGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGT--------------------------- 189 (411)
T ss_pred ccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCc---------------------------
Confidence 56678999999999999987777899999999875567899999887743200
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 010480 184 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 263 (509)
Q Consensus 184 ~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl 263 (509)
+. +
T Consensus 190 --------------------------~~--------------------------------~------------------- 192 (411)
T TIGR03224 190 --------------------------DA--------------------------------S------------------- 192 (411)
T ss_pred --------------------------Cc--------------------------------C-------------------
Confidence 00 0
Q ss_pred hhCCCCCCChhhhHHhhcCCCCCccccccCCCCCC---CCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCc
Q 010480 264 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 340 (509)
Q Consensus 264 ~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~---~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 340 (509)
..+..+|+|||||+|... .+.++|+|+.+.. ...++...|.+|+||+++.+|+
T Consensus 193 -----------------g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~Gd------ 248 (411)
T TIGR03224 193 -----------------GKPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKGD------ 248 (411)
T ss_pred -----------------CCcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCcC------
Confidence 011346999999987421 1479999988742 2345566899999999977654
Q ss_pred eeeEEEecCC-CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 010480 341 WAPIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 419 (509)
Q Consensus 341 ~v~v~~~~g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~ 419 (509)
.+.|..|.|. |.++....+|+||||+|||||||+||++++......+ ..++++||||+|+.+ |++|.+||++|.+..
T Consensus 249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~~ 326 (411)
T TIGR03224 249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKDF 326 (411)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhcC
Confidence 3778888776 6676555689999999999999999999987542211 247899999999998 999999999998655
Q ss_pred CcCeEEEEEecCC-CCcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010480 420 ALSQLIVAFSREG-PTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 497 (509)
Q Consensus 420 ~~~~~~~a~Sr~~-~~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 497 (509)
. ++++++||+. ..++|||+.+.+....+.+++. .+++||+||| ++|+++|.++|.++..+.+ +. .++++++
T Consensus 327 ~--~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~~-~~---~~~~~~~ 399 (411)
T TIGR03224 327 I--DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATNG-LS---WETLEPR 399 (411)
T ss_pred c--eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-cC---HHHHHHH
Confidence 3 5677999864 3689999999887777776663 4689999999 8999999999999997653 33 5679999
Q ss_pred HHHCCCeEEeeC
Q 010480 498 LQMTGRYLRDVW 509 (509)
Q Consensus 498 l~~~~Ry~~dvw 509 (509)
|+++|||+.|+|
T Consensus 400 l~~~~r~~~e~~ 411 (411)
T TIGR03224 400 LRAEGRLHLETY 411 (411)
T ss_pred HHHCCCeEEecC
Confidence 999999999999
|
Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB. |
| >cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=292.71 Aligned_cols=226 Identities=30% Similarity=0.476 Sum_probs=179.0
Q ss_pred CChhhhHHhhcCC--------CCCccccccCCCCC---CCCeEEEEEEEEEeeCCCC-ccccCcCchhhhhcCCCccCCC
Q 010480 271 PPLGVFFAAIVPR--------LQPRYYSISSSPRV---APSRIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSND 338 (509)
Q Consensus 271 ~~~~~~l~~~~p~--------~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~~-~~~~G~~S~~L~~~~~~~~~~~ 338 (509)
..+|||+.+.+|. ..+|+|||||+|.. +++.++|+|+.+...++.. ..+.|.+|+||+++.+|+
T Consensus 41 ~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd---- 116 (286)
T cd06208 41 YLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD---- 116 (286)
T ss_pred ccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC----
Confidence 4479998764342 23699999999853 2468999999885544332 455699999999976654
Q ss_pred CceeeEEEecCCCCCC-CCCCCCEEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEeccCCCCccccHHHHHHHH
Q 010480 339 CSWAPIFVRQSNFKLP-ADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFV 416 (509)
Q Consensus 339 ~~~v~v~~~~g~F~lp-~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~~el~~~~ 416 (509)
.+.|..|.|.|.+. .+..+|+||||+|||||||+||+++++..... ....++++||||+|+.+ |++|.++|++|+
T Consensus 117 --~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~ 193 (286)
T cd06208 117 --DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYP 193 (286)
T ss_pred --EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHH
Confidence 37888888887654 34467999999999999999999998764211 01236899999999998 999999999999
Q ss_pred HcCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHH
Q 010480 417 QSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490 (509)
Q Consensus 417 ~~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~ 490 (509)
+.+. ++++++++||++. .++||++.+.+..+.+++.+. .++.||+||| ++|+++|.+.|.+++. +..+
T Consensus 194 ~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~ 267 (286)
T cd06208 194 KQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLA 267 (286)
T ss_pred HhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHH
Confidence 8753 5688999998643 578999999887666666554 4569999999 8999999999999987 2357
Q ss_pred HHHHHHHHHHCCCeEEeeC
Q 010480 491 AESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 491 a~~~~~~l~~~~Ry~~dvw 509 (509)
|++++++|+++|||.+|+|
T Consensus 268 ~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 268 WEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHHcCCeEEecC
Confidence 9999999999999999999
|
Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then |
| >cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-27 Score=232.26 Aligned_cols=181 Identities=17% Similarity=0.308 Sum_probs=137.3
Q ss_pred CccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEc
Q 010480 286 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 365 (509)
Q Consensus 286 pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia 365 (509)
.|+|||+|+|.. .+.++|+|+.........+...|.+|+||+++.+|+ .+.|..|.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEEEE
Confidence 499999999863 478999997653211101235799999999876654 367888889998863 468999999
Q ss_pred cCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCC------CCcccch
Q 010480 366 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG------PTKEYVQ 439 (509)
Q Consensus 366 ~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~------~~~~yvq 439 (509)
+|||||||+||+++++.... ...+++||||+|+.+ |++|.+||+++++.+..+++++++|++. ..++||+
T Consensus 158 gGtGItP~~s~l~~~~~~~~---~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKTLK---SKRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhcCC---CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 99999999999999765321 126899999999997 9999999999998877778888888743 1457888
Q ss_pred hhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 440 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 440 ~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+.+.+.. +.... ..+..||+||| ++|++++.+.|.+.+.
T Consensus 234 ~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~Gv 273 (283)
T cd06188 234 QVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDLGV 273 (283)
T ss_pred HHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHcCC
Confidence 7765531 11111 23578999999 8999999999987643
|
(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. |
| >cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=222.21 Aligned_cols=188 Identities=28% Similarity=0.478 Sum_probs=144.8
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
...+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+|+ .+.|..
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~G~------~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKPGD------EVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCCCC------EEEEEC
Confidence 34689999766554 57899999999863 47899998765 2599999999886554 477888
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
|.|.|.++....+++||||+|||||||++|++++.... ..++++|+||+|+.+ |++|++||+++++.+.++++++
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK----PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC----CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 88998766566789999999999999999999987642 237899999999998 9999999999998877778999
Q ss_pred EEecCCCCcccchhhHhhcHHHHHHH-H-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 427 AFSREGPTKEYVQHKMMEKSSDIWNM-L-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 427 a~Sr~~~~~~yvq~~i~~~~~~v~~~-l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++++.....+.++.+... +.+... . ..+..+|+||| +.|++.+++.|.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~g 214 (223)
T cd00322 161 ALSRESEAKLGPGGRIDRE-AEILALLPDDSGALVYICGP-PAMAKAVREALVSLG 214 (223)
T ss_pred EecCCCCCCCcccceeeHH-HHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 9998654333333322210 011111 1 35789999999 899999999997754
|
FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in |
| >PRK10926 ferredoxin-NADP reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=225.98 Aligned_cols=186 Identities=19% Similarity=0.227 Sum_probs=137.7
Q ss_pred CChhhhHHhhcC--C-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p--~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
.-+|||+.+-++ . ...|+|||||+|. .+.++|+|+.+ +.|.+|+||+++.+|+ .+.|..|
T Consensus 31 ~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gp 93 (248)
T PRK10926 31 FTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVSE 93 (248)
T ss_pred CCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEecC
Confidence 458999865443 2 2369999999985 35788888754 3599999999866654 3677776
Q ss_pred c-CCCCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CcCeE
Q 010480 348 Q-SNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 424 (509)
Q Consensus 348 ~-g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~-~~~~~ 424 (509)
. |.|.++.. ..+|+||||+|||||||+||++++...+ ..++++||||+|+.+ |++|++||++|++.. ..+++
T Consensus 94 ~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~v 168 (248)
T PRK10926 94 AAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE----RFKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLRI 168 (248)
T ss_pred CCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC----CCCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEEE
Confidence 5 66777643 3479999999999999999999976432 236899999999997 999999999998875 35578
Q ss_pred EEEEecCCC---CcccchhhHhhc-HHHHHH-HH-hCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 425 IVAFSREGP---TKEYVQHKMMEK-SSDIWN-ML-SEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 425 ~~a~Sr~~~---~~~yvq~~i~~~-~~~v~~-~l-~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
+.++||++. .+++|++.+.+. ...... .+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 169 ~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 169 QTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 899998543 356777655432 111111 11 24688999999 89999999988764
|
|
| >cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=220.98 Aligned_cols=185 Identities=20% Similarity=0.297 Sum_probs=146.5
Q ss_pred CCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 269 AKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 269 ~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
....+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+ ..|.+|++|.+ +.+|+ .+.|..|
T Consensus 24 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 87 (224)
T cd06189 24 LDFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGP 87 (224)
T ss_pred cccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecC
Confidence 34568999876666667999999999863 47899988754 35889999987 55543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++....+++||||+|||||||++|++++.... ...+++|+||+|+.+ |++|++||+++++++.+++++.+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 162 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG----SKRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPV 162 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEE
Confidence 8999887665789999999999999999999987642 126899999999997 99999999999987777788888
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|++.. .++|+++.+.+.. .+ ..+..+|+||| +.|++++.+.|.+.+
T Consensus 163 ~s~~~~~~~g~~g~v~~~l~~~~---~~--~~~~~v~vCGp-~~m~~~~~~~l~~~G 213 (224)
T cd06189 163 LSEPEEGWQGRTGLVHEAVLEDF---PD--LSDFDVYACGS-PEMVYAARDDFVEKG 213 (224)
T ss_pred eCCCCcCCccccccHHHHHHhhc---cC--ccccEEEEECC-HHHHHHHHHHHHHcC
Confidence 888532 4577777664421 01 24678999999 899999999997754
|
Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. |
| >PRK08051 fre FMN reductase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=223.63 Aligned_cols=184 Identities=17% Similarity=0.212 Sum_probs=141.4
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~~~~ 348 (509)
...+|||+.+.++....|+|||+|.|.. ++.++|+|+.+ ..|..|.++. ++.+| + .+.|..|.
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~---------~~~~~~~~~~~~l~~G-~-----~v~v~gP~ 92 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGAS---------ELNLYAMAVMERILKD-G-----EIEVDIPH 92 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEc---------CCCcchHHHHHHcCCC-C-----EEEEEcCC
Confidence 4568999876557777899999999863 47899888754 2255566665 44444 3 47788888
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|.++.+..+|+||||+||||||+++|+++..... ...+++|+||+|+.+ |.+|.+||+++++.+..++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~----~~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T PRK08051 93 GDAWLREESERPLLLIAGGTGFSYARSILLTALAQG----PNRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVV 167 (232)
T ss_pred CceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC----CCCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEe
Confidence 998887555689999999999999999999987642 126899999999998 999999999999887777888888
Q ss_pred ecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHH-HHHH
Q 010480 429 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTIV 480 (509)
Q Consensus 429 Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L-~~i~ 480 (509)
|++++ .++|+++.+.+.. .+ ..+.++|+||| ++|+++|.+.| .+.+
T Consensus 168 ~~~~~~~~~~~g~v~~~l~~~~---~~--~~~~~vyicGp-~~m~~~v~~~l~~~~G 218 (232)
T PRK08051 168 EQPEEGWQGKTGTVLTAVMQDF---GS--LAEYDIYIAGR-FEMAKIARELFCRERG 218 (232)
T ss_pred CCCCCCcccceeeehHHHHhhc---cC--cccCEEEEECC-HHHHHHHHHHHHHHcC
Confidence 87532 4677777654321 11 13578999999 89999999988 6654
|
|
| >cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=222.29 Aligned_cols=189 Identities=20% Similarity=0.272 Sum_probs=144.5
Q ss_pred CChhhhHHhhcCCC----CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE-
Q 010480 271 PPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 345 (509)
Q Consensus 271 ~~~~~~l~~~~p~~----~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~- 345 (509)
..+|||+.+-+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||+++.+|+. +.+.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~Gd~------v~v~~ 87 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKPGDT------IYVGK 87 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCCCCE------EEECc
Confidence 45799986544542 4699999999863 7899888754 35999999998766543 6777
Q ss_pred EecCCCCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHc-CCcCe
Q 010480 346 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQ 423 (509)
Q Consensus 346 ~~~g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~-~~~~~ 423 (509)
.|.|.|.++.. ..+++||||+|||||||++++++..... ..++++|+||+|+.+ |++|.+||+++++. +..++
T Consensus 88 gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 162 (241)
T cd06195 88 KPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE----RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFR 162 (241)
T ss_pred CCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC----CCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEE
Confidence 78899988765 4689999999999999999999987532 136899999999998 99999999999887 55667
Q ss_pred EEEEEecCCCC---cccchhhHhhc-HHHHHHH-H-hCCCEEEEecCCcchHHHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPT---KEYVQHKMMEK-SSDIWNM-L-SEGAYLYVCGDAKSMARDVHRTLHTIVQE 482 (509)
Q Consensus 424 ~~~a~Sr~~~~---~~yvq~~i~~~-~~~v~~~-l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 482 (509)
++.++|+++.. ++|+++.+.+. ....... + ..+..||+||| ++|++++.+.|.+.+..
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~~ 226 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKGFS 226 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcCCC
Confidence 88888886543 57888766531 1111111 1 24678999999 89999999999886544
|
Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. |
| >cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=223.20 Aligned_cols=186 Identities=25% Similarity=0.348 Sum_probs=144.5
Q ss_pred CCChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+-+|.. ..|+|||+|.|.. .+.++|+|+.+ +.|.+|+||++ +.+|+ .+.|..|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECC
Confidence 456899987655654 5899999999863 47899988754 35999999984 55543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+..+++||||+|||||||++++++....+. ..+++|+||+|+.+ |++|.+||+++++.+..++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD----TRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC----CCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 89998876556899999999999999999999875421 26899999999998 99999999999987776788888
Q ss_pred EecCCC------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 428 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 428 ~Sr~~~------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+|++.. .++|+++.+.+.. .. ..++..+|+||| +.|++++.+.|.+.+.
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~---~~-~~~~~~vyvCGp-~~m~~~~~~~L~~~Gv 228 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHF---KN-DFRGHKAYLCGP-PPMIDACIKTLMQGRL 228 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhc---cc-ccccCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 997532 3567776554321 00 014679999999 8999999999987543
|
This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. |
| >PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=234.51 Aligned_cols=184 Identities=18% Similarity=0.283 Sum_probs=145.1
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCC
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 350 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~ 350 (509)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++..+.|+ .+.+..|.|.
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G~-----~v~v~gP~G~ 196 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKERD-----ILRIEGPLGT 196 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCCC-----EEEEEcCcee
Confidence 457999977667667899999999863 47899998754 45999999985433333 3778888899
Q ss_pred CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEec
Q 010480 351 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 430 (509)
Q Consensus 351 F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr 430 (509)
|.++....+|+||||+|||||||+||++++...+ ..++++||||+|+.+ |+++.++|++|+++...++++.++||
T Consensus 197 ~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~----~~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s~ 271 (339)
T PRK07609 197 FFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG----IQRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVSD 271 (339)
T ss_pred EEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC----CCCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEecC
Confidence 9987656789999999999999999999987642 126899999999998 99999999999887777788889997
Q ss_pred CC------CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 431 EG------PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 431 ~~------~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+. +.++|+++.+.+.. .+ ..+..+|+||| +.|++++.+.|.+.+
T Consensus 272 ~~~~~~~~g~~G~v~~~~~~~~---~~--~~~~~vy~CGp-~~m~~~~~~~l~~~G 321 (339)
T PRK07609 272 ALDDDAWTGRTGFVHQAVLEDF---PD--LSGHQVYACGS-PVMVYAARDDFVAAG 321 (339)
T ss_pred CCCCCCccCccCcHHHHHHhhc---cc--ccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 42 24577877665421 11 14579999999 899999999987743
|
|
| >PRK11872 antC anthranilate dioxygenase reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-26 Score=233.13 Aligned_cols=183 Identities=19% Similarity=0.317 Sum_probs=144.9
Q ss_pred CCChhhhHHhhcCCCC-CccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPRLQ-PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~-pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+.+|... .|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 136 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP 199 (340)
T PRK11872 136 DFLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAP 199 (340)
T ss_pred CcCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcC
Confidence 3468999976656543 799999999863 57899998764 35889999985 55543 3778888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++. ..+|+||||+|||||||+||++++.... ..++++||||+|+++ |++|.+||++|++...+++++.+
T Consensus 200 ~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~ 273 (340)
T PRK11872 200 LGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQG----CSPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPV 273 (340)
T ss_pred cceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcC----CCCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEE
Confidence 89998864 3589999999999999999999987632 126899999999998 99999999999988777889888
Q ss_pred EecCC----CCcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 428 FSREG----PTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 428 ~Sr~~----~~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
.|+.+ +.++||++.+.+. .+. .+..||+||| ++|++++.+.|.+.+.
T Consensus 274 ~s~~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp-~~mv~~~~~~L~~~Gv 325 (340)
T PRK11872 274 VSKASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGP-PPMVEAVKQWLDEQAL 325 (340)
T ss_pred EeCCCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 88643 2467888776542 122 3468999999 9999999999977543
|
|
| >cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=220.08 Aligned_cols=188 Identities=21% Similarity=0.211 Sum_probs=144.3
Q ss_pred CCChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
...+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++....|+ .+.|..|.
T Consensus 23 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~-----~v~v~gP~ 87 (232)
T cd06190 23 DFLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPGD-----ELELDGPY 87 (232)
T ss_pred ccCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCCC-----EEEEECCc
Confidence 356899987666766 7899999999864 57899988754 35889999997533333 36788888
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|.++.+..+++||||+|||||||++|++++..... ....+++|+||+|+.+ |++|++||+++.+.+..+++++++
T Consensus 88 G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~--~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 164 (232)
T cd06190 88 GLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY--LSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPAV 164 (232)
T ss_pred ccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc--CCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEEe
Confidence 9888765556899999999999999999999876411 1236899999999998 999999999999887777888888
Q ss_pred ecCCC--------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 429 SREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 429 Sr~~~--------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
|++.. .++|+++.+.+... + ...+..||+||| ++|++++.+.|.+.+
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~~---~-~~~~~~vyiCGp-~~m~~~v~~~l~~~g 219 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATLG---D-RLAEFEFYFAGP-PPMVDAVQRMLMIEG 219 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhcc---C-CccccEEEEECC-HHHHHHHHHHHHHhC
Confidence 87532 24566665543211 1 024689999999 899999999987753
|
Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family. |
| >PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-26 Score=237.41 Aligned_cols=182 Identities=19% Similarity=0.326 Sum_probs=141.5
Q ss_pred CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEE
Q 010480 284 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 363 (509)
Q Consensus 284 ~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~ 363 (509)
...|+|||+|.|.. .+.++|+|+.+......++.+.|.+|+||+++.+|+ .+.|..|.|.|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEE
Confidence 35699999999964 468999998765444444567799999999876654 36788888999876 35689999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC------Cccc
Q 010480 364 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEY 437 (509)
Q Consensus 364 Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~------~~~y 437 (509)
||+|||||||+||+++.+.... ..++++||||+|+.+ |++|.+||+++++.+.++++++++|++.. .+++
T Consensus 280 IAgGtGIaP~~sml~~~l~~~~---~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRLK---SKRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCCC---CCceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 9999999999999998775422 126899999999998 99999999999988777788888887421 4577
Q ss_pred chhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 438 VQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 438 vq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++.+.+.. +.+.. ..+.+||+||| ++|++++.+.|.+.+
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~G 396 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDLG 396 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 877665431 11111 23579999999 899999999987754
|
|
| >PRK10684 HCP oxidoreductase, NADH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-26 Score=230.80 Aligned_cols=185 Identities=16% Similarity=0.266 Sum_probs=139.9
Q ss_pred CChhhhHHhhcCC--CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPR--LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~--~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
.-+|||+.+-++. ...|+|||||.|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.+..|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP 100 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSDA 100 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeCC
Confidence 4589998655453 24599999999863 46799998754 45899999975 55543 3677788
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++....+++||||+|||||||+||+++.+... ...+++|+||+|+.+ |++|.+||++|++.+..+++++.
T Consensus 101 ~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~----~~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 175 (332)
T PRK10684 101 MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR----PQADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLV 175 (332)
T ss_pred ccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC----CCCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEE
Confidence 8999987666689999999999999999999986532 126899999999998 99999999999987666567766
Q ss_pred EecCCCCcccchhhHhhcHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~~~~yvq~~i~~~~~~v~~~l~--~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+++. .++|.++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.+
T Consensus 176 ~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~G 226 (332)
T PRK10684 176 AENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKALG 226 (332)
T ss_pred eccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 66533 345556555432 1122121 3678999999 899999999987754
|
|
| >cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-26 Score=221.03 Aligned_cols=185 Identities=22% Similarity=0.306 Sum_probs=143.2
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEecC
Confidence 35689999765554 35799999999863 47889888754 35889999998 55543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+..+++||||+|||||||++|++++.... ...+++||||+|+.+ |++|.++|+++++.+.+++++++
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG----EPQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC----CCceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 8999987655679999999999999999999987532 126899999999998 99999999999988777788888
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|++.. ..+++++.+.+. +.+ ......+|+||| +.|++++++.|.+.+
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~---l~~-~~~~~~vyicGp-~~m~~~~~~~l~~~G 224 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALRED---LAS-SDAKPDIYLCGP-PGMVDAAFAAAREAG 224 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHh---hcc-cCCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 887532 456666655432 111 123578999999 899999999988753
|
This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. |
| >TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-26 Score=235.95 Aligned_cols=181 Identities=18% Similarity=0.328 Sum_probs=138.6
Q ss_pred CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEE
Q 010480 285 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 364 (509)
Q Consensus 285 ~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~I 364 (509)
..|+|||+|+|.. .+.++|+|+.+.+.....+.+.|.+|+||+++.+|+ .+.|..|.|.|.+.. ..+|+|||
T Consensus 205 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvlI 276 (405)
T TIGR01941 205 TVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVFI 276 (405)
T ss_pred cceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEEE
Confidence 4699999999974 578999998763222122356799999999876654 377888999998863 46899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC------Ccccc
Q 010480 365 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYV 438 (509)
Q Consensus 365 a~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~------~~~yv 438 (509)
|+|||||||+||+++.+.... ...+++||||+|+++ |++|.+||+++++.+.++++++++|++.. .++++
T Consensus 277 AgGtGIaP~lsmi~~~l~~~~---~~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 277 GGGAGMAPMRSHIFDQLKRLK---SKRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred ecCcCcchHHHHHHHHHhcCC---CCCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCcccee
Confidence 999999999999998765321 126899999999998 99999999999988777788888886422 45678
Q ss_pred hhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 439 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 439 q~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++.+.+. .+.+.. ..++.||+||| ++|++++.+.|.+.+
T Consensus 353 ~~~l~~~--~l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~G 392 (405)
T TIGR01941 353 HNVLYEN--YLKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDLG 392 (405)
T ss_pred CHHHHHh--hhcccCCCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 7766532 111111 24678999999 899999999987753
|
This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. |
| >PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-26 Score=235.94 Aligned_cols=186 Identities=17% Similarity=0.243 Sum_probs=139.8
Q ss_pred CCChhhhHHhhcC--C--C-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVP--R--L-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p--~--~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+|||+.+.++ . . .+|+|||+|+|. .+.++|+|+.+ .+|.+|+||++ +.+|+ .+.
T Consensus 184 ~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~ 246 (399)
T PRK13289 184 DFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVGD------VLE 246 (399)
T ss_pred CCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCCC------EEE
Confidence 3458999976543 1 1 249999999986 36888888643 35999999987 65554 367
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|..|.|.|.++.+..+|+||||+|||||||+||+++++... ...+++||||+|+.+ |++|++||++|++.+..++
T Consensus 247 v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~ 321 (399)
T PRK13289 247 LAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ----PKRPVHFIHAARNGG-VHAFRDEVEALAARHPNLK 321 (399)
T ss_pred EEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC----CCCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcE
Confidence 88888999998666789999999999999999999987542 236899999999998 9999999999998876778
Q ss_pred EEEEEecCCCC----cccch-hhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPT----KEYVQ-HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 424 ~~~a~Sr~~~~----~~yvq-~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++.++|++... ..|.+ .++.. +.+.+.+ ..+..+|+||| ++|++++.+.|.+.+
T Consensus 322 ~~~~~s~~~~~~~~~~~~~~~g~i~~--~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 381 (399)
T PRK13289 322 AHTWYREPTEQDRAGEDFDSEGLMDL--EWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLELG 381 (399)
T ss_pred EEEEECCCccccccCCcccccCcccH--HHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 89999975321 11111 22221 1222223 24789999999 999999999987754
|
|
| >cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=217.00 Aligned_cols=182 Identities=23% Similarity=0.338 Sum_probs=143.0
Q ss_pred CCChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+||++.+.+|.. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEECC
Confidence 356899997655654 4799999999863 7899888754 35999999998 55543 3678788
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.. .++++|||+||||||+++++++..... ..++++|+||+|+.+ |++|.++|++|.+....++++.+
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG----SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC----CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 898887643 489999999999999999999987642 236899999999998 99999999999987777788888
Q ss_pred EecCCC---CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~---~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|++.. .++|+++.+.+.. ....+..+|+||| +.|++++++.|.+.+
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~~-----~~~~~~~v~icGp-~~m~~~~~~~l~~~G 216 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAED-----LNDGDVDVYLCGP-PPMVDAVRSWLDEQG 216 (228)
T ss_pred EcCCCccCCCcCCccHHHHHhh-----ccCCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 987543 4567887665421 1124578999999 899999999998653
|
Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. |
| >PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=224.57 Aligned_cols=181 Identities=20% Similarity=0.260 Sum_probs=138.0
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCC
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 350 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~ 350 (509)
..+|||+.+.+|....|+|||+|+|.. ++.++|+|+.+ |.+|.||+++.+|+ .+.|..|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~~-----------G~~S~~L~~l~~Gd------~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRRA-----------GRVTTVIHRLKEGD------IVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEeC-----------ChHHHHHHhCCCCC------EEEEeCCCCC
Confidence 468999976556656799999999863 47899988642 88999999876654 3678888787
Q ss_pred -CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 351 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 351 -F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
|.++....+|+||||+|||||||+||+++++... ...++++|+||+|+.+ |++|++||++|++....++++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~---~~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR---WKYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhcC---CCCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 6665444579999999999999999999987542 1136899999999997 9999999999988777778888899
Q ss_pred cCCCC---------------cccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 430 REGPT---------------KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 430 r~~~~---------------~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++++. ++++++.+.+. .. ..+..+|+||| ++|++++.+.|.+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~G 235 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINRG 235 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHcC
Confidence 85432 22333322211 11 13578999999 899999999997754
|
|
| >cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=216.57 Aligned_cols=183 Identities=22% Similarity=0.286 Sum_probs=144.0
Q ss_pred CChhhhHHhhcCCCC--CccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPRLQ--PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~--pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
..+||++.+.+|... .|+|||+|.|.. .+.++|+|+.. .+|.+|+||++ +.+|+ .+.|..|
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 87 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLSGP 87 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEeCC
Confidence 457999876656543 799999999874 47899888653 35999999998 65543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+..+++||||+|||||||++|++++.... ...+++|+|++|+.+ |++|.++|+++.+....++++.+
T Consensus 88 ~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 88 YGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred ccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEE
Confidence 8999887655689999999999999999999987542 236899999999998 99999999999988777778888
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++++.. .++|+++.+.+.. .+ ..++.+|+||| +.|++++++.|++.+
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~vcGp-~~~~~~v~~~l~~~G 213 (224)
T cd06187 163 VSHEEGAWTGRRGLVTDVVGRDG---PD--WADHDIYICGP-PAMVDATVDALLARG 213 (224)
T ss_pred eCCCCCccCCCcccHHHHHHHhc---cc--cccCEEEEECC-HHHHHHHHHHHHHcC
Confidence 887532 4678877665421 11 24689999999 899999999987754
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. |
| >cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=215.39 Aligned_cols=185 Identities=22% Similarity=0.334 Sum_probs=143.1
Q ss_pred CCChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+||++.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ .+|.+|+||++ +.+|+ .+.+..|
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVGD------PVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCCC------EEEEEcC
Confidence 346899987655543 5899999999874 47899988753 35899999997 55543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++....+++||||+|||||||+++++++.... ..++++|+||+|+.+ |++|.+||+++++....++++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG----SDRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC----CCCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 8999887555689999999999999999999987642 136799999999997 99999999999887666778888
Q ss_pred EecCCC------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 428 FSREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 428 ~Sr~~~------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+|++.. ..+++++.+.+.. .+ ..+..||+||| +.|++++.+.|.+.+.
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~~CGp-~~~~~~v~~~l~~~G~ 221 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRNE---AT--LAGCDVYLCGP-PPMIDAALPVLEMSGV 221 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhhc---cC--ccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 887532 2456666443321 11 13678999999 8999999999887543
|
These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. |
| >cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=216.26 Aligned_cols=181 Identities=19% Similarity=0.309 Sum_probs=137.9
Q ss_pred CChhhhHHhhcC--C-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEE
Q 010480 271 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 271 ~~~~~~l~~~~p--~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~ 346 (509)
..+||++.+-++ . ..+|+|||+|.|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 90 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMG 90 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeC
Confidence 468999865443 1 2479999999986 47899988754 34889999985 65554 367888
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
|.|.|.+++....++||||+||||||++||+++..... ...+++||||+|+.+ |++|.+||+++++.+..++++.
T Consensus 91 P~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 165 (231)
T cd06191 91 PQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA----PESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLC 165 (231)
T ss_pred CccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEE
Confidence 88999987655689999999999999999999987532 126899999999998 9999999999998776778889
Q ss_pred EEecCCCCc------ccchhhHhhcHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 427 AFSREGPTK------EYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 427 a~Sr~~~~~------~yvq~~i~~~~~~v~~~l~--~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++||+.... +++.+.+.+ .++. .++.+|+||| +.|++++.+.|.+.+
T Consensus 166 ~~s~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~vyicGp-~~mv~~~~~~l~~~G 220 (231)
T cd06191 166 IFTRETLDSDLLHGRIDGEQSLGA------ALIPDRLEREAFICGP-AGMMDAVETALKELG 220 (231)
T ss_pred EECCCCCCccccCCcccccHHHHH------HhCccccCCeEEEECC-HHHHHHHHHHHHHcC
Confidence 999864322 233322221 1221 3579999999 899999999987643
|
FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in |
| >PRK05713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=225.10 Aligned_cols=177 Identities=16% Similarity=0.188 Sum_probs=134.1
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC-
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS- 349 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g- 349 (509)
..+|||+.+.++....|+|||||.|.. .+.++|+|+.+ +.|.+|+||.++.+|+. +.+..+.|
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd~------v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGDL------LRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCCE------EEEccCCCC
Confidence 458999976556556899999999864 47899988754 35999999987766543 56666665
Q ss_pred CCCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 350 NFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 350 ~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
.|.++.+ ..+|+||||||||||||+||+++++..+. .++++|+||+|+.+ |++|.+||++|++.+.+++++.+.
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH----QGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 5666644 46899999999999999999999875421 26899999999998 999999999999877666777766
Q ss_pred ecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 429 SREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 429 Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++ ++++.+.+. .. ...+.++|+||| ++|++++.+.|.+.+
T Consensus 258 ~~------~~~~~l~~~----~~-~~~~~~vyiCGp-~~mv~~~~~~L~~~G 297 (312)
T PRK05713 258 AA------QLPAALAEL----RL-VSRQTMALLCGS-PASVERFARRLYLAG 297 (312)
T ss_pred Cc------chhhhhhhc----cC-CCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 53 233333211 00 123578999999 999999999997653
|
|
| >cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=209.08 Aligned_cols=185 Identities=19% Similarity=0.233 Sum_probs=139.4
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhc-CCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~-~~~~~~~~~~~v~v~~~~ 348 (509)
...+|||+.+-+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++. .+|+ .+.|..|.
T Consensus 23 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP~ 86 (222)
T cd06194 23 PYLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRK---------PNGAFSGWLGEEARPGH------ALRLQGPF 86 (222)
T ss_pred CcCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEec---------cCCccchHHHhccCCCC------EEEEecCc
Confidence 3568999976667777899999999874 36788888653 358999999985 5543 36788888
Q ss_pred CCCCCCC-CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 349 SNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 349 g~F~lp~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
|.|.+.. ...++++|||+|||||||++|+++++... ..++++||||+|+.+ |++|++||++|++.+..++++.+
T Consensus 87 G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (222)
T cd06194 87 GQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG----HQGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPC 161 (222)
T ss_pred CCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC----CCccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEE
Confidence 8887653 45679999999999999999999987542 237899999999998 99999999999987666678888
Q ss_pred EecCCCCc-ccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGPTK-EYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~~~-~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+++.... ++..+.+.+. +. .+..+..+|+||| +.|++++++.|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~G 210 (222)
T cd06194 162 VSEGSQGDPRVRAGRIAAH---LP-PLTRDDVVYLCGA-PSMVNAVRRRAFLAG 210 (222)
T ss_pred EccCCCCCcccccchhhhh---hc-cccCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 88754332 1111112111 11 1234689999999 899999999998754
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e |
| >cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-25 Score=211.06 Aligned_cols=181 Identities=23% Similarity=0.344 Sum_probs=138.8
Q ss_pred CChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC
Q 010480 271 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 349 (509)
Q Consensus 271 ~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g 349 (509)
..+|||+.+.+|.. ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+..+.|+ .+.|..|.|
T Consensus 28 ~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~-----~v~i~gP~G 92 (227)
T cd06213 28 YKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTGE-----RLTVRGPFG 92 (227)
T ss_pred cCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCCC-----EEEEeCCCc
Confidence 45899987655554 4899999999863 57899988653 35889999976433333 367888889
Q ss_pred CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHc-CCcCeEEEEE
Q 010480 350 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVAF 428 (509)
Q Consensus 350 ~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~-~~~~~~~~a~ 428 (509)
.|.++. ..+++||||+|||||||++|++++.... ..++++++||+|+++ |++|.+||+++++. ...++++.++
T Consensus 93 ~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~ 166 (227)
T cd06213 93 DFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG----TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPVL 166 (227)
T ss_pred ceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC----CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEEe
Confidence 998864 3578999999999999999999987532 136799999999998 99999999999865 3456788888
Q ss_pred ecCCC------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 429 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 429 Sr~~~------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
|++.. ..+++++.+.+. +..+..+|+||| +.|++++.+.|.+.+
T Consensus 167 s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~G 216 (227)
T cd06213 167 SEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRALG 216 (227)
T ss_pred cCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 87532 235676655432 135689999999 899999999887753
|
Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. |
| >cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=212.22 Aligned_cols=184 Identities=21% Similarity=0.315 Sum_probs=141.3
Q ss_pred CCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 269 AKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 269 ~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
.+..+||++.+.+|....|+|||+|+|.. .+.++|+|+. .|.+|+||+++.+|+ .+.+..|.
T Consensus 26 ~~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G~------~v~i~gP~ 87 (253)
T cd06221 26 FTFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPGD------TVGLRGPF 87 (253)
T ss_pred CCcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCCC------EEEEECCc
Confidence 34568999876666556799999999963 4789988863 288999999766543 36788887
Q ss_pred CC-CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 349 SN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 349 g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
|. |.++....+|+||||+||||||+++|+++++.... ..++++|||++|+.+ |++|+++|+++.+. .++++.++
T Consensus 88 G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~---~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~ 162 (253)
T cd06221 88 GNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE---DYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILT 162 (253)
T ss_pred CCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc---cCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEE
Confidence 87 66554356899999999999999999999886421 136899999999998 99999999999987 55678888
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+|++.. ..+++++.+.+... + ..+..||+||| +.|++++.+.|.+.+.
T Consensus 163 ~s~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyicGp-~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 163 VDRAEEGWTGNVGLVTDLLPELTL---D--PDNTVAIVCGP-PIMMRFVAKELLKLGV 214 (253)
T ss_pred eCCCCCCccCCccccchhHHhcCC---C--cCCcEEEEECC-HHHHHHHHHHHHHcCC
Confidence 887532 34667665544210 0 24689999999 9999999999987643
|
Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. |
| >cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=210.28 Aligned_cols=182 Identities=20% Similarity=0.295 Sum_probs=138.8
Q ss_pred CCChhhhHHhhcC--C---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p--~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+||++.+.++ . ...|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +.+|+ .+.
T Consensus 36 ~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~ 98 (247)
T cd06184 36 PFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLE 98 (247)
T ss_pred CCCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEE
Confidence 3457899866543 2 35799999999863 4788877643 35999999998 66654 367
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|..|.|.|.++.+..+++||||+|||||||+++++++.... ...+++||||+|+++ +.+|+++|+++++.+.+++
T Consensus 99 i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~ 173 (247)
T cd06184 99 VSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG----PGRPVTFIHAARNSA-VHAFRDELEELAARLPNLK 173 (247)
T ss_pred EEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC----CCCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeE
Confidence 88888999987645689999999999999999999987642 136899999999998 8999999999988766678
Q ss_pred EEEEEecCCCC--------cccchhhHhhcHHHHHHH-HhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPT--------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 424 ~~~a~Sr~~~~--------~~yvq~~i~~~~~~v~~~-l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++++|+.... .++++.. .+.+. ...+..||+||| +.|++++.+.|.+.+
T Consensus 174 ~~~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~G 232 (247)
T cd06184 174 LHVFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGP-VPFMQAVREGLKALG 232 (247)
T ss_pred EEEEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 88899886432 2333321 12221 135789999999 899999999997753
|
Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. |
| >cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-24 Score=207.46 Aligned_cols=187 Identities=18% Similarity=0.280 Sum_probs=137.0
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+.+|. ...|+|||+|.|.. .+.++|+|+.. .+|.+|.||++ +.+|+ .+.|.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~ 90 (231)
T cd06215 27 AYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWAS 90 (231)
T ss_pred CcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEE
Confidence 34689998655442 23699999999863 46799888754 34889999974 55543 36788
Q ss_pred EecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEE
Q 010480 346 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425 (509)
Q Consensus 346 ~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~ 425 (509)
.|.|.|.++.....++||||+|||||||++|+++..... ...+++|||++|+++ |++|.++|+++.++...++++
T Consensus 91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 165 (231)
T cd06215 91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR----PDADIVFIHSARSPA-DIIFADELEELARRHPNFRLH 165 (231)
T ss_pred cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC----CCCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEE
Confidence 888999887554689999999999999999999987532 126799999999998 999999999999876666788
Q ss_pred EEEecCCCC-cccchhhHhhcHHHHHHHHh--CCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 426 VAFSREGPT-KEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 426 ~a~Sr~~~~-~~yvq~~i~~~~~~v~~~l~--~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+.+++... ..+.++++... .+.+.+. .+..+|+||| ++|++++.+.|.+.+
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~--~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~g 220 (231)
T cd06215 166 LILEQPAPGAWGGYRGRLNAE--LLALLVPDLKERTVFVCGP-AGFMKAVKSLLAELG 220 (231)
T ss_pred EEEccCCCCcccccCCcCCHH--HHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHcC
Confidence 888875431 11222222211 1112221 3468999999 999999999987653
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr |
| >PTZ00274 cytochrome b5 reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=218.14 Aligned_cols=185 Identities=11% Similarity=0.148 Sum_probs=130.8
Q ss_pred CCChhhhHHhhcC-C-----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVP-R-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p-~-----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~ 343 (509)
...+||++++..+ . ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+++.+|+. +.
T Consensus 81 ~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~------v~ 144 (325)
T PTZ00274 81 NLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGDK------LL 144 (325)
T ss_pred CCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCCE------EE
Confidence 4568899864333 1 23699999999964 57899999864 46999999998766543 45
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhh--cCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA- 420 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~--~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~- 420 (509)
|..+.+.|.++.+..+++||||||||||||+||+++.+..+.. ..+..+++|+||+|+.+ |++|++||++|++...
T Consensus 145 v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~ 223 (325)
T PTZ00274 145 FRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSN 223 (325)
T ss_pred EeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCC
Confidence 5554445555444457999999999999999999998764211 11225899999999998 9999999999988654
Q ss_pred cCeEEEEEecCC------CCcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHH
Q 010480 421 LSQLIVAFSREG------PTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRT 475 (509)
Q Consensus 421 ~~~~~~a~Sr~~------~~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~ 475 (509)
.++++.++|+.. ...++|.+.+... +..... .+..+|+||| ++|+++|...
T Consensus 224 ~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 224 RFKVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred cEEEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 567888888642 1345565443211 000011 2357999999 9999998654
|
|
| >cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-24 Score=210.47 Aligned_cols=184 Identities=23% Similarity=0.344 Sum_probs=139.9
Q ss_pred CChhhhHHhhcC--C-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEE
Q 010480 271 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 271 ~~~~~~l~~~~p--~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~ 346 (509)
..+||++.+.+| . ..+|+|||+|.|....+.++|+|+.+ .+|.+|.||++ +.+|+ .+.|..
T Consensus 46 ~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 110 (243)
T cd06216 46 HRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELSQ 110 (243)
T ss_pred cCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEEC
Confidence 458999865543 2 34699999999851247899988754 34889999986 54543 367888
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
|.|.|.++.+..+++||||+||||||++|++++..... ..++++||||+|+.+ |.+|.+||+++.+++..++++.
T Consensus 111 P~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 185 (243)
T cd06216 111 PQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG----PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHL 185 (243)
T ss_pred CceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEE
Confidence 88999998665689999999999999999999987532 236899999999998 9999999999987766667888
Q ss_pred EEecCCCCcccchhhHhhcHHHHHHHH--hCCCEEEEecCCcchHHHHHHHHHHHHHH
Q 010480 427 AFSREGPTKEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIVQE 482 (509)
Q Consensus 427 a~Sr~~~~~~yvq~~i~~~~~~v~~~l--~~~~~iyvCGp~~~M~~~v~~~L~~i~~~ 482 (509)
.+|++ ...+++..... .+.+ ..++.+|+||| +.|++++.+.|.+.+..
T Consensus 186 ~~s~~-~~~g~~~~~~l------~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~Gv~ 235 (243)
T cd06216 186 LYTRE-ELDGRLSAAHL------DAVVPDLADRQVYACGP-PGFLDAAEELLEAAGLA 235 (243)
T ss_pred EEcCC-ccCCCCCHHHH------HHhccCcccCeEEEECC-HHHHHHHHHHHHHCCCc
Confidence 88875 33455433221 1121 13579999999 89999999999875543
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for |
| >TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-24 Score=220.87 Aligned_cols=190 Identities=18% Similarity=0.325 Sum_probs=137.4
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
...+|||+.+.++. ...|+|||+|+|. ++.++|+|+.+ ..|.+|+||++..+.|+ .+.|..
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd-----~v~v~g 95 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRPGD-----TLEVMA 95 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCCCC-----EEEEeC
Confidence 34689999765431 2469999999984 47899998765 34899999985444343 367777
Q ss_pred ecCCCCCCCCC--CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-cCe
Q 010480 347 RQSNFKLPADA--KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 423 (509)
Q Consensus 347 ~~g~F~lp~~~--~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~-~~~ 423 (509)
|.|.|.++.+. .+++||||+|||||||+||+++++... ...+++|+||+|+++ |++|.+||+++++.+. .++
T Consensus 96 P~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 170 (352)
T TIGR02160 96 PQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE----PRSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRFH 170 (352)
T ss_pred CceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC----CCceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcEE
Confidence 88999886542 379999999999999999999987642 126899999999998 9999999999987654 467
Q ss_pred EEEEEecCCCCcccchhhHhh-cHHHHH-HHH--hCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPTKEYVQHKMME-KSSDIW-NML--SEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 424 ~~~a~Sr~~~~~~yvq~~i~~-~~~~v~-~~l--~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
++.++|++.....+.+.++.. ....+. ++. .....+|+||| ++|++++++.|.+.+.
T Consensus 171 ~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~Gv 231 (352)
T TIGR02160 171 LAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGLGV 231 (352)
T ss_pred EEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 888889864322222233211 111111 111 23468999999 8999999999987643
|
Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. |
| >COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-24 Score=206.30 Aligned_cols=182 Identities=18% Similarity=0.333 Sum_probs=134.6
Q ss_pred CChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+|||+.+-++.- ..|.|||+|+|.. ++.+.|+|++. ..|.+|+||++..+.|+ .+.|..|
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd-----~l~v~~P 99 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRE---------DGGGGSNWLHDHLKVGD-----TLEVSAP 99 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEe---------CCCcccHHHHhcCCCCC-----EEEEecC
Confidence 46899987666654 6899999999984 46888888754 34899999994444443 3778888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++..+..+++|||+|||||||+||+++..... . .+++|+|++|+.+ |..|++| +.+.++.........
T Consensus 100 ~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~----~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~~ 172 (266)
T COG1018 100 AGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG----P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLGL 172 (266)
T ss_pred CCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEEE
Confidence 8999998766679999999999999999999987642 2 6799999999998 9999999 888877654333333
Q ss_pred EecCCCCcccch-hhHhhcHHHHHHHHhCC-CEEEEecCCcchHHHHHHHHHHHHHH
Q 010480 428 FSREGPTKEYVQ-HKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQE 482 (509)
Q Consensus 428 ~Sr~~~~~~yvq-~~i~~~~~~v~~~l~~~-~~iyvCGp~~~M~~~v~~~L~~i~~~ 482 (509)
+.......+|.. .++. ...... .++|+||| .+|+++|+..|.++...
T Consensus 173 ~~~~~~~~g~~~~~~l~-------~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g~~ 221 (266)
T COG1018 173 YTERGKLQGRIDVSRLL-------SAAPDGGREVYLCGP-GPFMQAVRLALEALGVP 221 (266)
T ss_pred EEecCCccccccHHHHh-------ccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCC
Confidence 332222222322 1111 112223 89999999 79999999999887644
|
|
| >cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-24 Score=204.60 Aligned_cols=178 Identities=18% Similarity=0.261 Sum_probs=132.5
Q ss_pred CCChhhhHHhhcCC----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
...+|||+.+.++. ...|+|||+|+|. .+.++|+|+.+. ..|.+|.||+++.+|+. +.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~~--------~~g~~s~~l~~l~~G~~------v~i~ 90 (218)
T cd06196 27 DFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSYP--------DHDGVTEQLGRLQPGDT------LLIE 90 (218)
T ss_pred CCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEcC--------CCCcHhHHHHhCCCCCE------EEEE
Confidence 45689998654442 3579999999986 378999887541 13667999998777653 6788
Q ss_pred EecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEE
Q 010480 346 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425 (509)
Q Consensus 346 ~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~ 425 (509)
.|.|.|.++ .|+||||+|||||||+||++++.... ...+++|+||+|+.+ |++|.+||++|.. ++++
T Consensus 91 gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~ 157 (218)
T cd06196 91 DPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKG----KLEGNTLIFANKTEK-DIILKDELEKMLG----LKFI 157 (218)
T ss_pred CCccceEec----CceEEEecCCCcChHHHHHHHHHhCC----CCceEEEEEecCCHH-HHhhHHHHHHhhc----ceEE
Confidence 888988753 57999999999999999999987632 125799999999997 9999999999853 3567
Q ss_pred EEEecCCCCcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 426 VAFSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 426 ~a~Sr~~~~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.++|++.. .+|.++++.+ +.+.+.+ ..++.||+||| +.|++++.+.|.+.+
T Consensus 158 ~~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G 209 (218)
T cd06196 158 NVVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKELG 209 (218)
T ss_pred EEEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 77887643 2344444432 1222333 23578999999 899999999987754
|
The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. |
| >cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-24 Score=203.42 Aligned_cols=179 Identities=21% Similarity=0.282 Sum_probs=133.3
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+-++. ...|+|||+|.|.. .+.++|+|+.+ |.+|.+|. ++.+|+ .+.|.
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~-----------G~~t~~l~~~l~~G~------~v~i~ 83 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKAL-----------GDYTRRLAERLKPGT------RVTVE 83 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeC-----------ChHHHHHHHhCCCCC------EEEEE
Confidence 34589998765553 56899999999863 46899988643 77999999 555543 36788
Q ss_pred EecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEE
Q 010480 346 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425 (509)
Q Consensus 346 ~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~ 425 (509)
.|.|.|.++.. .++++|||+||||||+++|++++..... .++++|+||+|+.+ |++|.++|+++...+ .++++
T Consensus 84 gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~ 156 (216)
T cd06198 84 GPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGD----ARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLH 156 (216)
T ss_pred CCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCC----CceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEE
Confidence 88899998765 6899999999999999999999876421 36899999999998 999999999998876 55676
Q ss_pred EEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 426 VAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 426 ~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++.++... .......+.. ... ...+..+|+||| ++|++++++.|.+.+
T Consensus 157 ~~~~~~~~-~~~~~~~~~~----~~~-~~~~~~vyicGp-~~m~~~v~~~l~~~G 204 (216)
T cd06198 157 VIDSPSDG-RLTLEQLVRA----LVP-DLADADVWFCGP-PGMADALEKGLRALG 204 (216)
T ss_pred EEeCCCCc-ccchhhhhhh----cCC-CcCCCeEEEECc-HHHHHHHHHHHHHcC
Confidence 66554322 1111111100 000 124679999999 899999999998754
|
The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. |
| >cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-24 Score=205.55 Aligned_cols=185 Identities=21% Similarity=0.336 Sum_probs=137.8
Q ss_pred CChhhhHHhhcC--CC--CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 271 PPLGVFFAAIVP--RL--QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 271 ~~~~~~l~~~~p--~~--~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
..+|||+.+.+| .. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++....|+ .+.|..
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd-----~v~i~g 95 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRV---------PGGEVSPYLHDEVKVGD-----LLEVRG 95 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCC-----EEEEeC
Confidence 457999976554 22 2499999999864 46899988754 34889999987433333 367888
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
|.|.|.++....++++|||+||||||+++++++..... ...+++|+||+|+.+ |.+|.+||.+++++...++++.
T Consensus 96 P~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~~ 170 (235)
T cd06217 96 PIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG----WPVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVTE 170 (235)
T ss_pred CceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC----CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEE
Confidence 88999876544678999999999999999999987642 136899999999998 8999999999998766667888
Q ss_pred EEecCCC-----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 427 AFSREGP-----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 427 a~Sr~~~-----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
++||+.. .++++...+.+. +.. ...+..+|+||| ++|++++.+.|.+.+
T Consensus 171 ~~s~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~~~v~icGp-~~m~~~v~~~l~~~G 224 (235)
T cd06217 171 ALTRAAPADWLGPAGRITADLIAE---LVP-PLAGRRVYVCGP-PAFVEAATRLLLELG 224 (235)
T ss_pred EeCCCCCCCcCCcCcEeCHHHHHh---hCC-CccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 8888621 234444332211 100 024689999999 899999999998754
|
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form |
| >PRK08221 anaerobic sulfite reductase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-24 Score=208.45 Aligned_cols=178 Identities=19% Similarity=0.244 Sum_probs=133.0
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCC
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 350 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~ 350 (509)
.-+|||+.+-+|...+|+|||++.+ .+.++|+|+.+ |.+|+||+++.+|+. +.|..|.|.
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~~-----------G~~S~~L~~l~~Gd~------v~v~gP~G~ 92 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRRV-----------GKVTDEIFNLKEGDK------LFLRGPYGN 92 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEeC-----------CchhhHHHhCCCCCE------EEEECCCCC
Confidence 4589998766676667999999975 36899888632 899999998766543 667777776
Q ss_pred -CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 351 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 351 -F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
|.++....+|+||||+|||||||+||+++..... ...++++||||+|+.+ |++|++||++|++.. .++++++
T Consensus 93 ~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~---~~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~ 165 (263)
T PRK08221 93 GFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENP---QEIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLD 165 (263)
T ss_pred CcccCccCCccEEEEcccccHHHHHHHHHHHHhCc---ccCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEec
Confidence 8877555689999999999999999999986532 1235899999999998 999999999998753 3455566
Q ss_pred cCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 430 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 430 r~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+... ..+++++.+.+.. ... ..+.++|+||| +.|++++.+.|.+.+
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~~---~~~-~~~~~vylCGp-~~mv~~~~~~L~~~G 215 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPELT---LKD-IDNMQVIVVGP-PIMMKFTVLEFLKRG 215 (263)
T ss_pred CCCCCCccCccccChhhHhcc---CCC-cCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 5322 3456654433210 000 14678999999 999999999997654
|
|
| >cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=203.51 Aligned_cols=186 Identities=23% Similarity=0.340 Sum_probs=136.4
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+.+|. ..+|+|||+|.|.. +.++|+|+.+ ..|.+|.||+ ++.+|+ .+.|.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEe
Confidence 45689999765442 36799999998863 4788888654 3589999998 455543 36788
Q ss_pred EecCCCCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-cCe
Q 010480 346 VRQSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQ 423 (509)
Q Consensus 346 ~~~g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~-~~~ 423 (509)
.|.|.|.++.+ ..+++||||+|||||||+++++++.... ..++++|+|++|+.+ |++|.+||+++.+... .++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE----PASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 88899988765 5789999999999999999999987542 136899999999998 9999999999987653 556
Q ss_pred EEEEEecCCCCc----ccchhhHhhcHHHHHHHH--hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPTK----EYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 424 ~~~a~Sr~~~~~----~yvq~~i~~~~~~v~~~l--~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+..++|+++... +.+...+... .+.+.. ..+..||+||| +.|++++.+.|.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~G 229 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNA--LLKNLLDATEFDEAFLCGP-EPMMDAVEAALLELG 229 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHH--hhhhhcccccCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 777788754322 2332221111 111111 24589999999 899999999987753
|
PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and |
| >cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=203.10 Aligned_cols=174 Identities=20% Similarity=0.281 Sum_probs=132.3
Q ss_pred CCChhhhHHhhcCC----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+.+|. ...|+|||+|.|.. .+.++|+|+.+ |.+|+||.++.+|+ .+.|.
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~Gd------~v~i~ 85 (246)
T cd06218 24 AAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAGD------ELDVL 85 (246)
T ss_pred cCCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCCC------EEEEE
Confidence 34579998766553 35799999998853 47899888653 77899999877654 36788
Q ss_pred EecCC-CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeE
Q 010480 346 VRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 424 (509)
Q Consensus 346 ~~~g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~ 424 (509)
.|.|. |.++. ..+++||||+|||||||+||++++... .++++|||++|+.+ |.+|++||++|.. ++
T Consensus 86 gP~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~------~~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~ 152 (246)
T cd06218 86 GPLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAER------GIKVTVLLGFRSAD-DLFLVEEFEALGA-----EV 152 (246)
T ss_pred ecCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhc------CCceEEEEEccchh-hhhhHHHHHhhCC-----cE
Confidence 88775 77764 468999999999999999999998652 16899999999998 9999999999843 22
Q ss_pred EEEEecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 425 IVAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 425 ~~a~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
.. ++++. +.++|+++.+.+... + ..+..||+||| +.|++++++.|.+.+.
T Consensus 153 ~~-~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyiCGp-~~mv~~~~~~L~~~Gv 204 (246)
T cd06218 153 YV-ATDDGSAGTKGFVTDLLKELLA---E--ARPDVVYACGP-EPMLKAVAELAAERGV 204 (246)
T ss_pred EE-EcCCCCCCcceehHHHHHHHhh---c--cCCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 22 23322 346788886655321 1 14689999999 8999999999987653
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. |
| >cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=201.47 Aligned_cols=187 Identities=19% Similarity=0.263 Sum_probs=139.4
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
...+||++.+.+|. ...|+|||+|.+.. .+.++|+|+.+ ..|.+|.||+++.+|+ .+.|..
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~---------~~G~~s~~l~~~~~G~------~v~i~g 91 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIY---------PGGKMSQYLHSLKPGD------TVEIRG 91 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEEC---------CCCcchhHHhcCCCCC------EEEEEC
Confidence 45689998765554 46799999999863 46788888753 2589999999876654 367888
Q ss_pred ecCCCCCCCCCC-CCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CcCeE
Q 010480 347 RQSNFKLPADAK-VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQL 424 (509)
Q Consensus 347 ~~g~F~lp~~~~-~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~-~~~~~ 424 (509)
|.|.|.+..+.. .++||||+||||||+++++++..... ....+++|+|++|+.+ |.+|.+||+++.+.. ..+++
T Consensus 92 P~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~---~~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~ 167 (234)
T cd06183 92 PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP---EDKTKISLLYANRTEE-DILLREELDELAKKHPDRFKV 167 (234)
T ss_pred CccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc---CcCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEE
Confidence 889998875554 79999999999999999999987532 1136899999999998 899999999998762 44567
Q ss_pred EEEEecCCC----CcccchhhHhhcHHHHHHH-HhCCCEEEEecCCcchHH-HHHHHHHHHH
Q 010480 425 IVAFSREGP----TKEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMAR-DVHRTLHTIV 480 (509)
Q Consensus 425 ~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~-l~~~~~iyvCGp~~~M~~-~v~~~L~~i~ 480 (509)
+.++|+.+. ..+++++.+... .... ...+..+|+||| +.|++ ++++.|.+.+
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~~G 225 (234)
T cd06183 168 HYVLSRPPEGWKGGVGFITKEMIKE---HLPPPPSEDTLVLVCGP-PPMIEGAVKGLLKELG 225 (234)
T ss_pred EEEEcCCCcCCccccceECHHHHHH---hCCCCCCCCeEEEEECC-HHHHHHHHHHHHHHcC
Confidence 777776432 245665443221 0000 114578999999 89999 9999987643
|
Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. |
| >TIGR02911 sulfite_red_B sulfite reductase, subunit B | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-23 Score=204.00 Aligned_cols=178 Identities=17% Similarity=0.204 Sum_probs=132.3
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCC
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 350 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~ 350 (509)
.-+|||+.+.+|...+|+|||+|.+ ++.++|+|+.+ |.+|++|+++.+|+ .+.|..|.|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~~-----------G~~S~~L~~l~~Gd------~v~i~gP~G~ 90 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRRV-----------GKVTDEVFTLKEGD------NLFLRGPYGN 90 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEeC-----------chhhHHHHcCCCCC------EEEEecCCCC
Confidence 4589999766677778999999853 47899888642 89999999876654 3678888777
Q ss_pred -CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 351 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 351 -F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
|.++....+|++|||+||||||++||+++++... ...++++|+||+|+.+ |++|++||++|++.. .+..+++
T Consensus 91 ~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~---~~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~ 163 (261)
T TIGR02911 91 GFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNP---KEIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLD 163 (261)
T ss_pred CcccCccCCceEEEEecccCcHHHHHHHHHHHhCc---ccCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEc
Confidence 8777555689999999999999999999976532 1236799999999998 999999999998753 2344455
Q ss_pred cCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 430 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 430 r~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+... ..+++++.+.+.. +.+ ..+.++|+||| +.|++++++.|.+.+
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~G 213 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKKG 213 (261)
T ss_pred CCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHcC
Confidence 4321 3456655443210 001 13578999999 999999999987754
|
Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. |
| >PTZ00319 NADH-cytochrome B5 reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-23 Score=206.81 Aligned_cols=194 Identities=15% Similarity=0.219 Sum_probs=134.6
Q ss_pred CChhhhHHhhcCC-------CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceee
Q 010480 271 PPLGVFFAAIVPR-------LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 343 (509)
Q Consensus 271 ~~~~~~l~~~~p~-------~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~ 343 (509)
..+|||+.+-++. ...|+||++|+|. ..+.++|+|+.+..........+|.+|+||+++.+|+. +.
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~------v~ 136 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDK------IE 136 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCE------EE
Confidence 4589998654442 2469999999986 35789999986521110001235999999987766543 67
Q ss_pred EEEecCCCCCCCC---------------CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCcccc
Q 010480 344 IFVRQSNFKLPAD---------------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 408 (509)
Q Consensus 344 v~~~~g~F~lp~~---------------~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly 408 (509)
|..|.|.|.+..+ ..+|++|||+|||||||++|+++..... .+..+++|+||+|+.+ |++|
T Consensus 137 i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~---~~~~~i~liyg~r~~~-dl~~ 212 (300)
T PTZ00319 137 MRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNK---EDRTKVFLVYANQTED-DILL 212 (300)
T ss_pred EEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCC---CCCceEEEEEecCCHH-HhhH
Confidence 8888888865421 1258999999999999999999987532 1225799999999998 9999
Q ss_pred HHHHHHHHHcCCcCeEEEEEecCCC-----CcccchhhHhhcHHHHHHHHh------CCCEEEEecCCcchHH-HHHHHH
Q 010480 409 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNMLS------EGAYLYVCGDAKSMAR-DVHRTL 476 (509)
Q Consensus 409 ~~el~~~~~~~~~~~~~~a~Sr~~~-----~~~yvq~~i~~~~~~v~~~l~------~~~~iyvCGp~~~M~~-~v~~~L 476 (509)
.+||+++++ ...++++.+.+++.. ..++|+..+.+.. + .... .+..||+||| ++|++ ++.+.|
T Consensus 213 ~~eL~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~-~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L 287 (300)
T PTZ00319 213 RKELDEAAK-DPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH--L-PVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNL 287 (300)
T ss_pred HHHHHHHhh-CCCEEEEEEECCCCCCCcccccceeCHHHHHhh--c-CCccccccccCCeEEEEECC-HHHHHHHHHHHH
Confidence 999999654 444578888887422 3466765443211 0 0001 3478999999 89998 567777
Q ss_pred HHHH
Q 010480 477 HTIV 480 (509)
Q Consensus 477 ~~i~ 480 (509)
.+.+
T Consensus 288 ~~~G 291 (300)
T PTZ00319 288 EKIG 291 (300)
T ss_pred HHcC
Confidence 6654
|
|
| >cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=193.92 Aligned_cols=176 Identities=20% Similarity=0.261 Sum_probs=130.6
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 349 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g 349 (509)
...+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+. ..+.+|.||++..+.|+ .+.|..|.|
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~--------~g~~~s~~l~~~~~~Gd-----~v~i~gP~g 90 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREP--------ASRGGSRYMHELLRVGD-----ELEVSAPRN 90 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEecc--------CCCchHHHHHhcCCCCC-----EEEEcCCcc
Confidence 4568999976656667899999999863 478999887541 11347999987544333 367888889
Q ss_pred CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 350 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 350 ~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
.|.++++ .+++||||+||||||+++++++.... ..+++|+||+|+.+ |.+|.++|+++. .. .+.+.++
T Consensus 91 ~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~------~~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~~ 158 (211)
T cd06185 91 LFPLDEA-ARRHLLIAGGIGITPILSMARALAAR------GADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHFD 158 (211)
T ss_pred CCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhC------CCCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEEC
Confidence 9988653 57999999999999999999997642 15799999999997 899999999987 22 3445555
Q ss_pred cCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 430 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 430 r~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+.. ...++.+.+.. ...+..+|+||| +.|++++.+.|.+.+.
T Consensus 159 ~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~gv 200 (211)
T cd06185 159 DEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAALGW 200 (211)
T ss_pred CCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 532 22333333321 124689999999 8999999999977543
|
PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal. |
| >COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-23 Score=192.97 Aligned_cols=186 Identities=19% Similarity=0.336 Sum_probs=149.2
Q ss_pred CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEE
Q 010480 285 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 364 (509)
Q Consensus 285 ~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~I 364 (509)
.-|+||+||-|.+ .+.|.|-|++..-+-.....+.|.||+|+.++++|+. +.|++|.|.|... +.++++|||
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDK------vtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDK------VTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCe------EEEeccchhhhhc-cCCCceEEE
Confidence 4599999999986 4788888877533322335778999999999999764 7899999988776 457899999
Q ss_pred ccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCC------cccc
Q 010480 365 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYV 438 (509)
Q Consensus 365 a~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~------~~yv 438 (509)
+||.|.||+||-|-+.+.+.++ .+++.+.||+|+.. +.+|.+++++++++.++|++|+++|.+.++ .+++
T Consensus 282 gGGAGmapmRSHIfDqL~rlhS---kRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFi 357 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRLHS---KRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFI 357 (410)
T ss_pred ecCcCcCchHHHHHHHHHhhcc---cceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHH
Confidence 9999999999999988876544 38899999999998 899999999999999999999999986442 3445
Q ss_pred hhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCC
Q 010480 439 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 485 (509)
Q Consensus 439 q~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~ 485 (509)
...+.+. .+.++- .++..+|+||| +-|-.+|.+.|.+++.+..+
T Consensus 358 hnv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~en 402 (410)
T COG2871 358 HNVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVEREN 402 (410)
T ss_pred HHHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCccccc
Confidence 4444443 222221 35789999999 89999999999999887654
|
|
| >cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=194.97 Aligned_cols=162 Identities=17% Similarity=0.248 Sum_probs=118.3
Q ss_pred CChhhhHHhhcCC-------------------CCCccccccCCCCCC--CCeEEEEEEEEEeeCCCCccccCcCchhhhh
Q 010480 271 PPLGVFFAAIVPR-------------------LQPRYYSISSSPRVA--PSRIHVTCALVYEKTPTGRVHKGLCSTWMKN 329 (509)
Q Consensus 271 ~~~~~~l~~~~p~-------------------~~pR~YSIaSsp~~~--~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~ 329 (509)
..+||++.+-+|. ...|+|||||+|..+ .+.++|+|+.+ |.+|+||++
T Consensus 26 ~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~~-----------G~~T~~L~~ 94 (220)
T cd06197 26 WTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRKK-----------GPVTGFLFQ 94 (220)
T ss_pred cCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEeC-----------CCCCHHHHH
Confidence 4578887655553 134999999999743 26888887642 899999998
Q ss_pred cCCCccCCCCceeeEEEecCCCCCCC---CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCcc
Q 010480 330 SLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 406 (509)
Q Consensus 330 ~~~~~~~~~~~~v~v~~~~g~F~lp~---~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ 406 (509)
...... ..+..+.+..|.|.|.++. +..+++||||||||||||++|+++++... ....+++|+||+|+.+ |+
T Consensus 95 ~~~~~~-~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~---~~~~~v~l~~~~r~~~-~~ 169 (220)
T cd06197 95 VARRLR-EQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSR---NTTWDITLLWSLREDD-LP 169 (220)
T ss_pred hhhccc-CCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcc---cCCCcEEEEEEecchh-hH
Confidence 754210 0123478888899999875 34578999999999999999999987532 1236899999999998 99
Q ss_pred ccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 010480 407 IYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 478 (509)
Q Consensus 407 ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~ 478 (509)
+|.+||+++... ...+.. ++ ...||+||| ++|+++|.+.+.+
T Consensus 170 ~~~~el~~~~~~--~~~~~~-~~--------------------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 170 LVMDTLVRFPGL--PVSTTL-FI--------------------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred HHHHHHHhccCC--ceEEEE-EE--------------------------eccEEEECc-HHHHHHHHHHhhh
Confidence 999999876531 111111 11 117999999 8999999988775
|
Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity |
| >COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-22 Score=193.94 Aligned_cols=180 Identities=22% Similarity=0.288 Sum_probs=143.7
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 349 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g 349 (509)
...+|||+.+.+|....|+|||||.+.. .+.++|.+++. ..|.+|.+++.+.+++. +.+.+|.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~gd~------i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKEGDK------IRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccCCCE------EEEEcCCC
Confidence 4679999988888899999999999974 57777777654 35999999999977654 67888888
Q ss_pred CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 350 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 350 ~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
++.+.++..+|+++||||||+||+++++++....+ ...+++++||.|+++ |+++.+||+++..+ +++.+.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~----~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG----DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHhcC----CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 87776666788999999999999999999987632 347899999999998 99999999999875 3555554
Q ss_pred -cCCCCcccc-hhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 430 -REGPTKEYV-QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 430 -r~~~~~~yv-q~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
.+.+.+++| ++.+.+... .+...+|+||| +.|++++.+.+.+...
T Consensus 170 ~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g~ 216 (252)
T COG0543 170 DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYGV 216 (252)
T ss_pred CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 233467888 666654311 14689999999 9999999999888653
|
|
| >PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-22 Score=195.32 Aligned_cols=168 Identities=23% Similarity=0.301 Sum_probs=128.6
Q ss_pred CCChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
...+|||+.+.+|.. .+|+|||+|+| .+.++|+|+.+ |.+|+||+++.+|+ .+.|..
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~-----------G~~t~~l~~l~~G~------~v~i~g 90 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKV-----------GEGTKKLSKLKEGD------ELDIRG 90 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEc-----------ChHHHHHhcCCCCC------EEEEEc
Confidence 356899987655544 58999999998 37899888643 88999999876654 367888
Q ss_pred ecCC-CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEE
Q 010480 347 RQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425 (509)
Q Consensus 347 ~~g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~ 425 (509)
|.|. |.++. ..+|+||||+||||||+++++++..... .+++|+|++|+.+ |++|.+||+++.+ ++
T Consensus 91 P~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~~------~~ 156 (250)
T PRK00054 91 PLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------VEVTTVLGARTKD-EVIFEEEFAKVGD------VY 156 (250)
T ss_pred ccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC------CcEEEEEEcCCHH-HhhhHHHHHhcCC------EE
Confidence 8775 88764 4679999999999999999999987421 5799999999998 9999999998431 22
Q ss_pred EEEecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 426 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 426 ~a~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+. +++. +.++|+++.+.+.. .....||+||| +.|++++.+.|.+.+
T Consensus 157 ~~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~G 204 (250)
T PRK00054 157 VT-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEKK 204 (250)
T ss_pred EE-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 22 2322 34578887665431 23568999999 999999999998854
|
|
| >cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-22 Score=191.24 Aligned_cols=167 Identities=22% Similarity=0.272 Sum_probs=125.5
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 349 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g 349 (509)
..-+|||+.+.+|....|+|||+|+| +.++|+|+. .|.+|+||+++.+|+ .+.+..|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd------~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGD------KLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCC------EEEEECcCC
Confidence 45589999765566667999999997 578888753 288999999866554 367778878
Q ss_pred C-CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 350 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 350 ~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
. |.++ .+|+||||+|||||||++++++.... ++++|+||+|+.+ |++|++||+++ . ++.++.
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~-------~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA-------ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHhc-------CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 7 8775 57999999999999999999987642 5799999999998 99999999972 1 222222
Q ss_pred ec-CCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 429 SR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 429 Sr-~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+. +....+++++.+.+.. ......||+||| ++|++++.+.|.+.+.
T Consensus 145 ~~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~g~ 191 (233)
T cd06220 145 DDGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDERGV 191 (233)
T ss_pred eCCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 21 1223567776554321 123468999999 8999999999977543
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. |
| >cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-22 Score=191.66 Aligned_cols=172 Identities=15% Similarity=0.094 Sum_probs=126.4
Q ss_pred CChhhhHHhhcC---CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p---~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+|||+.+.+| ....|+|||+|.|.. .+.++|+|+.+ |.+|+||.++.+|+ .+.|..|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~~-----------G~~t~~l~~~~~G~------~l~i~gP 86 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEIR-----------GPKTKLIAELKPGE------KLDVMGP 86 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEEc-----------CchHHHHHhCCCCC------EEEEEcc
Confidence 457999876553 446799999999863 47899888642 88999998776654 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.+..+..++++|||+|||||||++++++.... ..+++|+||+|+.+ |.+|.+||+++. . ....
T Consensus 87 ~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~------~~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~~ 153 (243)
T cd06192 87 LGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN------GNKVTVLAGAKKAK-EEFLDEYFELPA----D--VEIW 153 (243)
T ss_pred CCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC------CCeEEEEEecCcHH-HHHHHHHHHhhc----C--eEEE
Confidence 888766544467999999999999999999998753 16899999999998 999999998872 1 2223
Q ss_pred EecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+++. ...+++++... ... ...+..+|+||| +.|++++++.|.+.+
T Consensus 154 ~~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 154 TTDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 33332 23455544311 011 123468999999 899999999998864
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi |
| >cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-22 Score=192.26 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=126.2
Q ss_pred CCChhhhHHhhcC-CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCcee-eEEEe
Q 010480 270 KPPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p-~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~ 347 (509)
...+|||+.+-++ ....|+|||+|.|.. .+.++|+|+.+ |..|.+|.++.+|+. + .+..|
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~~-----------G~~t~~l~~l~~G~~------v~~i~gP 87 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQVV-----------GKSTRELATLEEGDK------IHDVVGP 87 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEeC-----------CchHHHHHhcCCCCE------eeeeecC
Confidence 3468999865433 235799999998753 47899888642 888999987766543 5 47788
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.+.. ..+++||||+||||||+++++++....+ .+++|+||+|+.+ |++|.+||++++++ ++.+
T Consensus 88 ~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~ 154 (248)
T cd06219 88 LGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKEAG------NRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT 154 (248)
T ss_pred CCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 88876543 3679999999999999999999976421 5799999999998 99999999999643 2222
Q ss_pred EecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 428 FSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 428 ~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
+++. ...+++++.+.+.. .+ ......||+||| ++|++++.+.|.+.
T Consensus 155 -~~~~~~~~~g~v~~~l~~~~---~~-~~~~~~vyiCGP-~~m~~~~~~~l~~~ 202 (248)
T cd06219 155 -TDDGSYGEKGFVTDPLKELI---ES-GEKVDLVIAIGP-PIMMKAVSELTRPY 202 (248)
T ss_pred -eCCCCCCccccchHHHHHHH---hc-cCCccEEEEECC-HHHHHHHHHHHHHc
Confidence 3332 24567766554321 11 123468999999 99999999988764
|
Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD, |
| >PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-22 Score=196.59 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=126.7
Q ss_pred CChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCcee-eEEEec
Q 010480 271 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 348 (509)
Q Consensus 271 ~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~~ 348 (509)
.-+|||+.+-++. ..+|+|||+|++.. ++.++|+|+.+ |..|.+|+++.+|+. + .|..|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~~-----------G~~T~~L~~l~~Gd~------v~~i~GP~ 89 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQAV-----------GKSTRKLAELKEGDS------ILDVVGPL 89 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEeC-----------CcHHHHHhcCCCCCE------EeeEEcCC
Confidence 4589999765443 34689999998753 57899988753 889999997766543 5 588888
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|+|...+. .+++||||+|+||||++++++++.... .+++|+||+|+.+ |++|.+||+++... +++ .
T Consensus 90 G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~ 155 (281)
T PRK06222 90 GKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKEAG------NKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-T 155 (281)
T ss_pred CCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHHCC------CeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-E
Confidence 88665433 579999999999999999999876421 5799999999998 99999999987642 222 2
Q ss_pred ecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 429 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 429 Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+.+. +.+++|++.+.+. +.+ ......||+||| ++|++++.+.+.+..
T Consensus 156 ~~d~~~g~~G~v~~~l~~~---~~~-~~~~~~vy~CGP-~~M~~~v~~~l~~~g 204 (281)
T PRK06222 156 TDDGSYGRKGFVTDVLKEL---LES-GKKVDRVVAIGP-VIMMKFVAELTKPYG 204 (281)
T ss_pred cCCCCcCcccchHHHHHHH---hhc-CCCCcEEEEECC-HHHHHHHHHHHHhcC
Confidence 3332 2456777655432 111 111457999999 999999999887654
|
|
| >PLN02252 nitrate reductase [NADPH] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-21 Score=219.15 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=137.5
Q ss_pred CChhhhHHhhcC---CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p---~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
+++||++.+.++ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++.+|+. +.|..|
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~------V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDT------IDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCE------EEEecC
Confidence 467888754432 124699999999864 5789999987632111111246999999988766543 567777
Q ss_pred cCCC--------CCCCC--CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 010480 348 QSNF--------KLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 417 (509)
Q Consensus 348 ~g~F--------~lp~~--~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~ 417 (509)
.|.| .++.. ..++++|||||||||||++||++++.... +..+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~---d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE---DKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC---CCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 6665 44422 24799999999999999999999876421 236899999999998 9999999999998
Q ss_pred cC-CcCeEEEEEecCC-C----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHH-HHHHHHHHH
Q 010480 418 SG-ALSQLIVAFSREG-P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHTIV 480 (509)
Q Consensus 418 ~~-~~~~~~~a~Sr~~-~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~-v~~~L~~i~ 480 (509)
.+ ..++++.++|++. . .+++|++.+.+. .......+..+|+||| ++|++. +...|.+++
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~---~l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~G 879 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE---HLPEGGDETLALMCGP-PPMIEFACQPNLEKMG 879 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH---hcccCCCCeEEEEeCC-HHHHHHHHHHHHHHcC
Confidence 75 4567888888743 1 346666544321 1110123578999999 899984 777776643
|
|
| >KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-21 Score=186.00 Aligned_cols=183 Identities=16% Similarity=0.252 Sum_probs=141.8
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
.+|.||.+...+|. .--|+||-.|++.. .+.++|.|++. .+|.+|.||.++..|+. +.+.+
T Consensus 81 ~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd~------ve~rG 144 (286)
T KOG0534|consen 81 GLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGDT------VEFRG 144 (286)
T ss_pred CcccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCCE------EEEec
Confidence 35777777555443 24699999999875 57999988764 35999999999988754 67888
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-cCeEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLI 425 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~-~~~~~ 425 (509)
|.|.|.+++...+.+.|||||||||||..++++++...+ +..+++|+|++++++ |+++++||+.++++.+ .+.++
T Consensus 145 P~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~---d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~ 220 (286)
T KOG0534|consen 145 PIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPE---DTTKISLLYANKTED-DILLREELEELASKYPERFKVW 220 (286)
T ss_pred CccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCC---CCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEE
Confidence 889998887667899999999999999999999986432 357899999999998 9999999999999877 77888
Q ss_pred EEEecCCC----CcccchhhHhhcHHHHHHHH---hC-CCEEEEecCCcchHHH-HHHHHHHH
Q 010480 426 VAFSREGP----TKEYVQHKMMEKSSDIWNML---SE-GAYLYVCGDAKSMARD-VHRTLHTI 479 (509)
Q Consensus 426 ~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l---~~-~~~iyvCGp~~~M~~~-v~~~L~~i 479 (509)
.+.+++.. .++||...+.. ..+ .. ...++|||| ++|.+. +...|.++
T Consensus 221 y~v~~~~~~w~~~~g~It~~~i~------~~l~~~~~~~~~~liCGP-p~m~~~~~~~~le~L 276 (286)
T KOG0534|consen 221 YVVDQPPEIWDGSVGFITKDLIK------EHLPPPKEGETLVLICGP-PPMINGAAQGNLEKL 276 (286)
T ss_pred EEEcCCcccccCccCccCHHHHH------hhCCCCCCCCeEEEEECC-HHHHhHHHHHHHHhc
Confidence 88887653 45666543332 222 12 478999999 899974 44444443
|
|
| >PRK05802 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-21 Score=196.57 Aligned_cols=169 Identities=11% Similarity=0.081 Sum_probs=122.4
Q ss_pred ChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 272 PLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 272 ~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
-+|||+.+-+|. ...|+|||+|+|.. .+.++|+|+++ |..|.+|+++.+|+. +.|..|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~~-----------G~~T~~L~~l~~Gd~------l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEIR-----------GVKTKKIAKLNKGDE------ILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEec-----------ChhHHHHhcCCCCCE------EEEeCCC
Confidence 589999654432 33599999999863 57899988754 899999998777643 6677775
Q ss_pred --CCCCCC---CCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 349 --SNFKLP---ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 349 --g~F~lp---~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|.|.++ ....+++||||||+||||++++++++...+ .+++|+||+|+++ |++|.++|+++..+..+++
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~------~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~~ 230 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG------NKIIVIIDKGPFK-NNFIKEYLELYNIEIIELN 230 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC------CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEEE
Confidence 447663 233568999999999999999999987532 4799999999998 9999999999865422211
Q ss_pred EEEEEecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 424 LIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 424 ~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
+..++. .+++|++.+.+. +...||+||| +.|+++|.+.+.++
T Consensus 231 ----~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 231 ----LLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ----ecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 112221 123444433221 2367999999 89999999998874
|
|
| >COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-21 Score=185.66 Aligned_cols=176 Identities=19% Similarity=0.288 Sum_probs=132.7
Q ss_pred hhhhHHhhcCC----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 273 LGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 273 ~~~~l~~~~p~----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
+|||--+-++. +.|+|||||++... .+++|+|+.. |..|.-|.+..+.|+ ++.|.+|.
T Consensus 245 aGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK~L-----------GD~Tk~l~dnLk~G~-----k~~vdGPY 306 (438)
T COG4097 245 AGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIKAL-----------GDFTKTLKDNLKVGT-----KLEVDGPY 306 (438)
T ss_pred CCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEehhh-----------hhhhHHHHHhccCCc-----eEEEecCc
Confidence 57764322343 45999999999763 4899998765 999999998665554 57889999
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|........ -|+||||+|||||+|+++.....+. ..++.|||+||+.+ +.+|.+||++++++.+++.++..-
T Consensus 307 G~F~~~~g~~~-QVWIAGGIGITPFis~l~~l~~~~s----~~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHiiD 380 (438)
T COG4097 307 GKFDFERGLNT-QVWIAGGIGITPFISMLFTLAERKS----DPPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHIID 380 (438)
T ss_pred ceeecccCCcc-cEEEecCcCcchHHHHHHhhccccc----CCceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEec
Confidence 99988754322 8999999999999999999876432 27899999999998 899999999999987776777643
Q ss_pred ecCCCCcccchhh-HhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 429 SREGPTKEYVQHK-MMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 429 Sr~~~~~~yvq~~-i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
| +..+|+... +.... + ......||+||| ++|+++++..|++...
T Consensus 381 S---s~~g~l~~e~ler~~----~-~~~~~sv~fCGP-~~m~dsL~r~l~~~~~ 425 (438)
T COG4097 381 S---SKDGYLDQEDLERYP----D-RPRTRSVFFCGP-IKMMDSLRRDLKKQNV 425 (438)
T ss_pred C---CCCCccCHHHhhccc----c-ccCcceEEEEcC-HHHHHHHHHHHHHcCC
Confidence 3 345666432 22211 1 012348999999 9999999999988643
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-20 Score=218.20 Aligned_cols=187 Identities=17% Similarity=0.260 Sum_probs=136.4
Q ss_pred CChhhhHHhhcC--C-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVP--R-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p--~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+|||+.+.++ . ...|+|||+|.|. ..+.++|+|+. ..|.+|+||+++.+|+. +.|..+
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr~----------~~G~~S~~L~~l~~Gd~------v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILARG----------DKGTLKEWISALRPGDS------VEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEEc----------CCChhHHHHhhCCCCCE------EEEeCC
Confidence 568999976443 1 2359999999996 45778887741 35899999988777653 566554
Q ss_pred cC----------CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 010480 348 QS----------NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 417 (509)
Q Consensus 348 ~g----------~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~ 417 (509)
.| .|.++....+|+||||+|||||||+||+++++.... .....+++||||+|+.+ |++|++||++|++
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~-~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY-VDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc-cCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 33 466665556899999999999999999998875321 01235899999999998 9999999999988
Q ss_pred cCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 418 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 418 ~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+.. .+++++++|++.. ..++|++.+.+. +......+..||+||| ++|++++.+.|++.+
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~G 1152 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGP-PVMQRAVKADLLALG 1152 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 754 4688888887532 346666543221 1111124578999999 899999999988754
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-19 Score=198.64 Aligned_cols=173 Identities=17% Similarity=0.163 Sum_probs=129.2
Q ss_pred CChhhhHHhhcCCC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCcee-eEEEec
Q 010480 271 PPLGVFFAAIVPRL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 348 (509)
Q Consensus 271 ~~~~~~l~~~~p~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~~ 348 (509)
.-+|||+.+.++.. .+|+|||+|.+.. .+.++|+|+.+ |.+|.+|+++.+|+. + .|..|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~Gd~------v~~v~GP~ 89 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEGDY------ITDVVGPL 89 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCCCE------eCeEeCCC
Confidence 45899997654433 4589999999863 57899998765 889999998776643 5 578888
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|+|..... .++++|||||+||||++++++++...+ .+++||||+|+.+ |++|.+||++|..+ ++++
T Consensus 90 G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~- 155 (752)
T PRK12778 90 GNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG------NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM- 155 (752)
T ss_pred CCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC------CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 88876533 478999999999999999999887532 4799999999998 99999999988642 2222
Q ss_pred ecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 429 SREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 429 Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+.++ +.+++|++.+.+.. ........||+||| ++|++++.+.+.+.+
T Consensus 156 t~dg~~g~~G~v~~~l~~~~----~~~~~~~~vy~CGP-~~M~~~v~~~l~~~g 204 (752)
T PRK12778 156 TDDGSYGRKGLVTDGLEEVI----KRETKVDKVFAIGP-AIMMKFVCLLTKKYG 204 (752)
T ss_pred ECCCCCCCcccHHHHHHHHh----hcCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 2332 25678877654421 11112357999999 999999999887643
|
|
| >PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-19 Score=148.89 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=80.0
Q ss_pred EEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc-CeEEEEEecCCC----Cccc
Q 010480 363 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP----TKEY 437 (509)
Q Consensus 363 ~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~-~~~~~a~Sr~~~----~~~y 437 (509)
|||||||||||+||++++.... ..++++||||+|+.+ |++|+++|+++++.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----DNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----CTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhC----CCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 7999999999999999998752 237999999999998 99999999999987664 333333 43322 4678
Q ss_pred chhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHH
Q 010480 438 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 474 (509)
Q Consensus 438 vq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~ 474 (509)
|++.+.+.... ......+.+||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99888654222 112246899999999 999999875
|
Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A .... |
| >cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-19 Score=170.54 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=117.4
Q ss_pred CChhhhHHhhcCC----------------------CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCcccc-CcCchhh
Q 010480 271 PPLGVFFAAIVPR----------------------LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHK-GLCSTWM 327 (509)
Q Consensus 271 ~~~~~~l~~~~p~----------------------~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~-G~~S~~L 327 (509)
..+||++.+.+|. ...|+|||+|.+. ..++++|+|+++ .. |.+|+||
T Consensus 27 ~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-~~~~l~~~v~~~---------~~~G~~s~~l 96 (235)
T cd06193 27 DGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-EAGELDIDFVLH---------GDEGPASRWA 96 (235)
T ss_pred CCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-CCCEEEEEEEeC---------CCCCchHHHH
Confidence 3479998765553 3469999999875 357899888653 23 8999999
Q ss_pred hhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccc
Q 010480 328 KNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYI 407 (509)
Q Consensus 328 ~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~l 407 (509)
+++.+|+ .+.+..|.|.|.++. ..++++|||+||||||+++|+++.... .+++++|++|+.+ |.+
T Consensus 97 ~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~~-------~~~~~~~~~~~~~-d~~ 161 (235)
T cd06193 97 ASAQPGD------TLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPAD-------ARGTALIEVPDAA-DEQ 161 (235)
T ss_pred hhCCCCC------EEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCCC-------CeEEEEEEECCHH-Hcc
Confidence 8876654 377888889998864 357899999999999999999986431 5799999999986 655
Q ss_pred cHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 408 YEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 408 y~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
+.+++. .++++.+.+++.. .+.....+.. . ......+..+|+||| ++|++++++.|.+.
T Consensus 162 ~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~---~-~~~~~~~~~vyicGp-~~mv~~v~~~l~~~ 220 (235)
T cd06193 162 PLPAPA-------GVEVTWLHRGGAE-AGELALLAVR---A-LAPPAGDGYVWIAGE-AGAVRALRRHLREE 220 (235)
T ss_pred ccCCCC-------CcEEEEEeCCCCC-cchhHHHHHh---c-ccCCCCCeEEEEEcc-HHHHHHHHHHHHHc
Confidence 443321 2355555443322 1111110000 0 000124579999999 89999999988763
|
Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy |
| >cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-18 Score=162.39 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=116.8
Q ss_pred CCChhhhHHhhcCCC----CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPRL----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~----~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+.+|.. ..|+|||+|.|....+.++|+|+.. .|..|..+..+........+..+.|.
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~~v~v~ 93 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSLKVLVE 93 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCceeEEEEE
Confidence 456899987666654 6899999999864247899888642 38777777666520000112246677
Q ss_pred EecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCc-cccHHHHHHHHHcCCcCeE
Q 010480 346 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD-YIYEDELNNFVQSGALSQL 424 (509)
Q Consensus 346 ~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d-~ly~~el~~~~~~~~~~~~ 424 (509)
+|.|.|..+.....++|||||||||||++++++++...........++.|+|++|+.+ | ..|.++|.+..+.....++
T Consensus 94 GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~ 172 (210)
T cd06186 94 GPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEI 172 (210)
T ss_pred CCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceE
Confidence 7778876444456789999999999999999999876532111236899999999997 7 4799999751111111023
Q ss_pred EEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 010480 425 IVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 478 (509)
Q Consensus 425 ~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~ 478 (509)
++..++ +|+||| .+|+++++....+
T Consensus 173 ~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 173 EIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 333332 999999 8999999988766
|
ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=190.15 Aligned_cols=183 Identities=14% Similarity=0.118 Sum_probs=126.1
Q ss_pred CChhhhHHhhcC-CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCcee-eEEEec
Q 010480 271 PPLGVFFAAIVP-RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQ 348 (509)
Q Consensus 271 ~~~~~~l~~~~p-~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v-~v~~~~ 348 (509)
..+|||+.+.++ ....|+|||+|.+.. .+.++|+|+.+ |..|.+|.++.+|+. + .|..|.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd~------l~~I~GPl 738 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIGDA------FSGIAGPL 738 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCcCE------EeeeecCC
Confidence 458999965432 234599999998753 57899988754 888888888777643 5 377787
Q ss_pred CCCC-CCC-CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHH---HHHHHHcCC-cC
Q 010480 349 SNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE---LNNFVQSGA-LS 422 (509)
Q Consensus 349 g~F~-lp~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~e---l~~~~~~~~-~~ 422 (509)
|.|. ++. ...+++||||||+||||+++++++....+ .+++|+||+|+.+ |++|.++ |++|++... .+
T Consensus 739 G~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g------~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~ 811 (944)
T PRK12779 739 GRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG------NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQL 811 (944)
T ss_pred CCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC------CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCe
Confidence 8764 433 22468999999999999999999876531 5799999999997 8888766 455665433 33
Q ss_pred eEEEEEecCC--CCcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 423 QLIVAFSREG--PTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 423 ~~~~a~Sr~~--~~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++++ +.++ +.+++|++.+.+........-. +...||+||| ++|+++|.+.|.+.+
T Consensus 812 ~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~G 870 (944)
T PRK12779 812 DVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPYG 870 (944)
T ss_pred EEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 44433 4332 2467887765432111000000 1367999999 999999999887654
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=182.17 Aligned_cols=172 Identities=15% Similarity=0.170 Sum_probs=122.8
Q ss_pred CChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCcee-eEEEe
Q 010480 271 PPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWA-PIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v-~v~~~ 347 (509)
.-+|||+.+.++. ..+|+|||++.+.. .+.+.|.|+.+ |..|.||+ ++.+|+. + .+..|
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~v-----------G~~T~~L~~~lk~Gd~------l~~v~GP 89 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQAL-----------GKTTREMMTKFKAGDT------FEDFVGP 89 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEec-----------CcHHHHHHhcCCCCCE------EeeeecC
Confidence 3589999655433 34699999998753 47788877653 88999995 5555543 4 56777
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.... ..+++||||||+||||+++|++++...+ .+++++||+|+.+ +++|.+||+++... ++++
T Consensus 90 lG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g------~~v~li~g~R~~~-~l~~~del~~~~~~-----~~v~ 156 (1006)
T PRK12775 90 LGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG------ARTTGIIGFRNKD-LVFWEDKFGKYCDD-----LIVC 156 (1006)
T ss_pred CCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC------CcEEEEEeCCChH-HcccHHHHHhhcCc-----EEEE
Confidence 77765432 2468999999999999999999876432 5699999999997 99999999876532 2222
Q ss_pred EecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+.++ +.+++|++.+.+.. .. .....||+||| +.|+++|.+.+++..
T Consensus 157 -tddgs~G~~G~vt~~l~~~l----~~-~~~d~vy~CGP-~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 157 -TDDGSYGKPGFVTAALKEVC----EK-DKPDLVVAIGP-LPMMNACVETTRPFG 204 (1006)
T ss_pred -ECCCCCCCCCChHHHHHHHh----cc-CCCCEEEEECC-HHHHHHHHHHHHHCC
Confidence 3332 24678877665421 10 12357999999 899999999887643
|
|
| >PLN02292 ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=156.69 Aligned_cols=178 Identities=16% Similarity=0.145 Sum_probs=116.7
Q ss_pred CChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+||++-+.+|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+....++......+.+.+|
T Consensus 352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGP 420 (702)
T PLN02292 352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGP 420 (702)
T ss_pred cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECC
Confidence 3467766544564 4679999999985445788888863 3788999988755443221224567778
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHH-------HHHHcC
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELN-------NFVQSG 419 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~-------~~~~~~ 419 (509)
.|.+..+....++++|||||+||||++++++++.+..... ...+++.|+|++|+.+ |.++.+++. ++++..
T Consensus 421 YG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~~ 499 (702)
T PLN02292 421 YGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSFI 499 (702)
T ss_pred ccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhcC
Confidence 8877644334578999999999999999999987642211 1125899999999998 998876554 223333
Q ss_pred CcCeEEEEEecCCCCc-ccchhhHhhcHHHHHHHH-----hCCCEEEEecCC
Q 010480 420 ALSQLIVAFSREGPTK-EYVQHKMMEKSSDIWNML-----SEGAYLYVCGDA 465 (509)
Q Consensus 420 ~~~~~~~a~Sr~~~~~-~yvq~~i~~~~~~v~~~l-----~~~~~iyvCGp~ 465 (509)
..++...++|+...+ .|-++ ..+.+.+.+ .++..+.+|||.
T Consensus 500 -~~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 500 -DIQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred -CceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 336777788875432 12122 111121221 256789999993
|
|
| >PLN02844 oxidoreductase/ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-14 Score=154.50 Aligned_cols=182 Identities=14% Similarity=0.138 Sum_probs=119.8
Q ss_pred CCChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCC----Ccc-CCCCce
Q 010480 270 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----MEK-SNDCSW 341 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~----~~~-~~~~~~ 341 (509)
+..+||++.+-+|.. +.|+|||+|+|..+++.++++|+.. |-.|+.|.+... .|. ......
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceE
Confidence 445899987655653 5799999998864557788887642 445666654322 121 101124
Q ss_pred eeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHH-----H
Q 010480 342 APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-----F 415 (509)
Q Consensus 342 v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~-----~ 415 (509)
+.|..|.|.|..+....++++||||||||||++|++++........ ....++.|+|++|+.+ |..|.+++.. +
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~ 485 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQS 485 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhH
Confidence 5667778988765444578999999999999999999987642211 1135799999999998 9999999863 2
Q ss_pred HHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHH-H-hCCCEEEEecCC
Q 010480 416 VQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNM-L-SEGAYLYVCGDA 465 (509)
Q Consensus 416 ~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~-l-~~~~~iyvCGp~ 465 (509)
.+.. ..+++...+|+......+.+.+... ....++ + .+..++.+|||.
T Consensus 486 ~~~~-~lkl~iyVTRE~~~~~rl~~~i~~~-~~~~~~~~~~~~~~~~i~G~~ 535 (722)
T PLN02844 486 SNQL-NLKLKVFVTQEEKPNATLRELLNQF-SQVQTVNFSTKCSRYAIHGLE 535 (722)
T ss_pred HHhc-CceEEEEECCCCCCCCchhhHhhcc-chhhhcCCCCCCCceEEeCCC
Confidence 2222 3467777888765544555555442 111111 2 345789999994
|
|
| >PLN02631 ferric-chelate reductase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-14 Score=154.99 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=108.2
Q ss_pred CCCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCC-ccCCCCceeeE
Q 010480 269 AKPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM-EKSNDCSWAPI 344 (509)
Q Consensus 269 ~~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~-~~~~~~~~v~v 344 (509)
.+.-+||++.+.+|. .+.|+|||+|+|..+++.++|+|+. .|..|++|.+.... ++ ...+.+
T Consensus 333 ~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~---~i~V~V 398 (699)
T PLN02631 333 LHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSID---SLEVST 398 (699)
T ss_pred CcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCC---eeEEEE
Confidence 345578887655565 4679999999986445788888863 38889999875432 22 123556
Q ss_pred EEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHH------HH
Q 010480 345 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF------VQ 417 (509)
Q Consensus 345 ~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~------~~ 417 (509)
.+|.|.|..+.....++||||||+||||++|++++.+.+...+ .+.++++|+|++|+.+ |.+|.|||..+ .+
T Consensus 399 eGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~ 477 (699)
T PLN02631 399 EGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS 477 (699)
T ss_pred ECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh
Confidence 6777877665445578999999999999999999988643211 1124799999999998 99999999863 12
Q ss_pred cCCcCeEEEEEecCCC
Q 010480 418 SGALSQLIVAFSREGP 433 (509)
Q Consensus 418 ~~~~~~~~~a~Sr~~~ 433 (509)
+ .+.++....||++.
T Consensus 478 ~-~ni~i~iyVTR~~~ 492 (699)
T PLN02631 478 R-LNLRIEAYITREDK 492 (699)
T ss_pred c-CceEEEEEEcCCCC
Confidence 2 34578888999754
|
|
| >KOG3378 consensus Globins and related hemoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-13 Score=127.79 Aligned_cols=182 Identities=18% Similarity=0.294 Sum_probs=108.2
Q ss_pred CCCCChhhhHHhhc--CCCC---CccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCcee
Q 010480 268 SAKPPLGVFFAAIV--PRLQ---PRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 342 (509)
Q Consensus 268 s~~~~~~~~l~~~~--p~~~---pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v 342 (509)
+....+||++..+- |++. -|.||.|+......+.++|.|+.+ -.|++|+|+++....|+. +
T Consensus 178 ~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~---------A~G~VS~~~H~~~KVGD~-----v 243 (385)
T KOG3378|consen 178 ISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV---------AGGVVSNFVHDNLKVGDI-----V 243 (385)
T ss_pred eccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh---------hchhhHHHhhccccccce-----e
Confidence 44456899886432 3321 355555554443457788877654 459999999988777763 6
Q ss_pred eEEEecCCCCCCC---CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 010480 343 PIFVRQSNFKLPA---DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 419 (509)
Q Consensus 343 ~v~~~~g~F~lp~---~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~ 419 (509)
.++.|.|+|.+.. +..+|++++|+|+||||+++||++.+.. |..| .|..-++++..+.
T Consensus 244 ~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C-------------~~~R------P~~~~~~~~~~K~ 304 (385)
T KOG3378|consen 244 GVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLC-------------YSSR------PFKQWLEQLKLKY 304 (385)
T ss_pred eccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhc-------------CCCC------cHHHHHHHHHHHH
Confidence 6888899998764 4569999999999999999999987642 2222 1222222221110
Q ss_pred -CcCeEEEEEecCCC--CcccchhhHhh--cHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHc
Q 010480 420 -ALSQLIVAFSREGP--TKEYVQHKMME--KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQ 483 (509)
Q Consensus 420 -~~~~~~~a~Sr~~~--~~~yvq~~i~~--~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~ 483 (509)
.+.++.-.||.+.. .+.-|...+.. +.+.+.++-...++||.||| ..+|+.|.+.|.++..+-
T Consensus 305 k~~~K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~~ 372 (385)
T KOG3378|consen 305 KENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVEP 372 (385)
T ss_pred HHHHHHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCCc
Confidence 00011111222211 11222222211 11222222135799999999 899999999999987543
|
|
| >PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-09 Score=96.37 Aligned_cols=71 Identities=17% Similarity=0.370 Sum_probs=48.3
Q ss_pred CEEEEccCCccchhHHHHHHHHHHHhh-cCCCCCeEEEEeccCCCCcc-ccHHHHHHHHHcC--CcCeEEEEEecC
Q 010480 360 PIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDY-IYEDELNNFVQSG--ALSQLIVAFSRE 431 (509)
Q Consensus 360 pii~Ia~GtGIAP~~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~-ly~~el~~~~~~~--~~~~~~~a~Sr~ 431 (509)
.++|||||+||||++++++++...... .....++.|+|.+|+.+ ++ .|.++|+++.... ...++.+.++++
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~-~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~ 77 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDAD-ELEWFSPELNELLELDRLGNVEVHIYVTRE 77 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TT-TTHHHHHHHHHHHHHHHHTSEEEEEEETT-
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchh-hhhhhhHHHHHHHHHhccccceEEEEEcCC
Confidence 489999999999999999999876541 23347899999999997 54 5776666554331 234667776664
|
; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A. |
| >PRK05723 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-09 Score=97.46 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=46.1
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCC--CCchhhHHHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPELD 55 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~--~~~e~~f~~W~~~l~~~l~ 55 (509)
+||.|| |+||++|++|||+|++++|++|++ .++|++|++|++++|++|.
T Consensus 100 ~Fc~a~--~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 100 TFCGGG--EQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred HHhHHH--HHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 799999 999999999999999999999997 4799999999999999874
|
|
| >KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-07 Score=100.44 Aligned_cols=192 Identities=14% Similarity=0.271 Sum_probs=112.4
Q ss_pred hhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCC--cc-CC----CCcee
Q 010480 273 LGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM--EK-SN----DCSWA 342 (509)
Q Consensus 273 ~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~--~~-~~----~~~~v 342 (509)
+||++-+-+|. ++.+||||+|+| +++.+.+.|+.. |..|.-|.+.... .+ .. ...++
T Consensus 384 ~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~i 450 (646)
T KOG0039|consen 384 PGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPKI 450 (646)
T ss_pred CCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCceE
Confidence 67876443454 578999999999 368999888765 6677777654331 00 00 02345
Q ss_pred eEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcC------------CCCCeEEEEeccCCCCcc-ccH
Q 010480 343 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA------------ELGPSLLFFGCRNRKMDY-IYE 409 (509)
Q Consensus 343 ~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~------------~~~~~~L~~G~R~~~~d~-ly~ 409 (509)
.|.+|.|.=.-+-..-..++|||+|+|+|||.|.+++.+.....+. ..+++..+|-||... ++ .|.
T Consensus 451 ~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf~wf~ 529 (646)
T KOG0039|consen 451 LIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SFEWFK 529 (646)
T ss_pred EEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-chHHHH
Confidence 5666655322111223457999999999999999999987544332 235678888888876 55 355
Q ss_pred HHHHHHHH---cCCcCeEEEEEecC----CC----------------Ccccch------hhHhhcHHHHHHHH---hCC-
Q 010480 410 DELNNFVQ---SGALSQLIVAFSRE----GP----------------TKEYVQ------HKMMEKSSDIWNML---SEG- 456 (509)
Q Consensus 410 ~el~~~~~---~~~~~~~~~a~Sr~----~~----------------~~~yvq------~~i~~~~~~v~~~l---~~~- 456 (509)
+.+.+... .+.. .++...+.. .. .+..++ +--+.+-+.+.+-+ .++
T Consensus 530 ~~l~~v~~~~~~~~~-e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~ 608 (646)
T KOG0039|consen 530 GLLTEVEEYDSSGVI-ELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNV 608 (646)
T ss_pred HHHHHHHHHHhcCCc-hhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCc
Confidence 55555442 2222 233333210 00 001111 11122223333333 122
Q ss_pred -CEEEEecCCcchHHHHHHHHHHHH
Q 010480 457 -AYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 457 -~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.-||.||| +.|.+.+++...+..
T Consensus 609 ~vgVf~CGp-~~l~~~~~~~~~~~~ 632 (646)
T KOG0039|consen 609 RVGVFSCGP-PGLVKELRKLCNDFS 632 (646)
T ss_pred eEEEEEeCC-HHHHHHHHHHHHhcc
Confidence 47999999 899999998877754
|
|
| >PRK09004 FMN-binding protein MioC; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-08 Score=87.61 Aligned_cols=49 Identities=29% Similarity=0.118 Sum_probs=44.8
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCC--CchhhHHHHHHHHHHHH
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 54 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~--~~e~~f~~W~~~l~~~l 54 (509)
.+||+|+ |.+|++|+++||+|+.|+|++|++. +.|++|++|.+++|.+|
T Consensus 96 ~~fc~~~--~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 96 DTFCGAI--DKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHhHHH--HHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 4799999 8899999999999999999999964 58999999999999864
|
|
| >PRK08105 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8e-08 Score=86.23 Aligned_cols=49 Identities=31% Similarity=0.287 Sum_probs=44.4
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCC--CchhhHHHHHHHHHHHHH
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELD 55 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~--~~e~~f~~W~~~l~~~l~ 55 (509)
-+||.|+ |+||++|+++||+|++|+|++|++. ++|++|++|+++ |.++.
T Consensus 98 ~~fc~~~--~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~~ 148 (149)
T PRK08105 98 DNFCGAG--KQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTLL 148 (149)
T ss_pred HHHHHHH--HHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHHh
Confidence 4799999 9999999999999999999999865 689999999999 87653
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=97.61 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=63.8
Q ss_pred CChhhhHHhhcC-----CC-CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeE
Q 010480 271 PPLGVFFAAIVP-----RL-QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 344 (509)
Q Consensus 271 ~~~~~~l~~~~p-----~~-~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v 344 (509)
.-+|||+.+-.+ .+ .||++||++.... .+.++|+|+++ |..|.+|+++.+|+. +.+
T Consensus 819 ~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~l~~Gd~------v~v 880 (1028)
T PRK06567 819 FKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKTLSENEK------VVL 880 (1028)
T ss_pred CCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhcCCCCCE------EEE
Confidence 348999965432 12 6679999998753 57899999887 999999999988754 567
Q ss_pred EEecC-CCCCCCCCCCCEEEEccCCccchh
Q 010480 345 FVRQS-NFKLPADAKVPIIMIGPGTGLAPF 373 (509)
Q Consensus 345 ~~~~g-~F~lp~~~~~pii~Ia~GtGIAP~ 373 (509)
.+|.| .|.++. .+.+++||||+|+||+
T Consensus 881 ~GPLG~pF~i~~--~k~vLLVgGGVGiApL 908 (1028)
T PRK06567 881 MGPTGSPLEIPQ--NKKIVIVDFEVGNIGL 908 (1028)
T ss_pred EcccCCCCCCCC--CCeEEEEEccccHHHH
Confidence 77755 587763 3579999999999983
|
|
| >PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.5e-06 Score=69.97 Aligned_cols=67 Identities=24% Similarity=0.239 Sum_probs=51.4
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
...+||++.+-++. ...|+|||+|.|. ..+.++|+|+.. .+|.+|+||+++.+|+ .+.+..
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~g 92 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIRG 92 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEEE
Confidence 45789999776662 2359999999997 457899998754 4699999999876654 378888
Q ss_pred ecCCCC
Q 010480 347 RQSNFK 352 (509)
Q Consensus 347 ~~g~F~ 352 (509)
|.|.|.
T Consensus 93 P~G~f~ 98 (99)
T PF00970_consen 93 PYGNFT 98 (99)
T ss_dssp EESSEE
T ss_pred cccccC
Confidence 989885
|
To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A .... |
| >COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.1 Score=50.82 Aligned_cols=171 Identities=20% Similarity=0.329 Sum_probs=100.4
Q ss_pred CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEE
Q 010480 284 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIM 363 (509)
Q Consensus 284 ~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~ 363 (509)
...|.|||.+-.. ..+++.+-+-++ ...|.+|+|-.+..+|+. +.|..|+|.+..++. ..-++|
T Consensus 85 ~~~R~YTiR~~d~-~~~e~~vDfVlH--------~~~gpas~WA~~a~~GD~------l~i~GP~g~~~p~~~-~~~~lL 148 (265)
T COG2375 85 PPQRTYTIRAVDA-AAGELDVDFVLH--------GEGGPASRWARTAQPGDT------LTIMGPRGSLVPPEA-ADWYLL 148 (265)
T ss_pred CCcccceeeeecc-cccEEEEEEEEc--------CCCCcchhhHhhCCCCCE------EEEeCCCCCCCCCCC-cceEEE
Confidence 3579999987543 234555444322 146999999999888764 567778888766543 456999
Q ss_pred EccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCC-cccchhhH
Q 010480 364 IGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKM 442 (509)
Q Consensus 364 Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~-~~yvq~~i 442 (509)
||==|++--+.++|++.-.. .+...|.-..+.. |. .++ .....+ .+. .+.|++.. ..-++..+
T Consensus 149 igDetAlPAIa~iLE~lp~~-------~~~~a~lev~d~a-d~---~~l---~~~~~l-~~~-Wl~r~~~~~~~ll~~a~ 212 (265)
T COG2375 149 IGDETALPAIARILETLPAD-------TPAEAFLEVDDAA-DR---DEL---PSPDDL-ELE-WLARDDAPTEQLLAAAL 212 (265)
T ss_pred eccccchHHHHHHHHhCCCC-------CceEEEEEeCChH-Hh---hcc---CCCCce-eEE-EecCCCccchHHHHHHH
Confidence 99999998888998886431 3456777777765 54 222 112222 333 33443321 11122222
Q ss_pred hhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHH--HHHHHH
Q 010480 443 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK--AESMVK 496 (509)
Q Consensus 443 ~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~--a~~~~~ 496 (509)
.+. .+-..+.++||.|= ..|++++++.|+ .+.|++... |.-|++
T Consensus 213 ~~~-----~~P~~~~~vwiagE-~~~v~~~Rk~L~----~e~g~dk~~i~a~gYW~ 258 (265)
T COG2375 213 AQA-----ALPAGDYYVWIAGE-ASAVKAIRKFLR----NERGFDKSRVRAIGYWR 258 (265)
T ss_pred hcc-----cCCCCceEEEEecc-HHHHHHHHHHHh----hhcCCCHHHhhhhhhhh
Confidence 211 11123479999997 677776666554 455666554 333443
|
|
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.0094 Score=60.79 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=40.7
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHh
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 56 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~ 56 (509)
+||.-| |.+|+++..|||.|++|+|+||.+++ ..+.|...+.+.|+.
T Consensus 148 ~f~~~a--k~~d~wi~~LG~~r~~p~G~~~~~~~---~id~W~~~~~~~Lk~ 194 (601)
T KOG1160|consen 148 KFCYQA--KRADKWISRLGGRRIFPLGEVDMDSA---KIDEWTSLVAETLKD 194 (601)
T ss_pred HHHHHH--HhHHHHHHhhcCceeeecCccccccc---cHHHHHHHHHHHHcC
Confidence 699988 88999999999999999999998743 244999999888764
|
|
| >KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.066 Score=55.35 Aligned_cols=53 Identities=28% Similarity=0.462 Sum_probs=47.6
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCC--CchhhHHHHHHHHHHHHHhhh
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLL 58 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~--~~e~~f~~W~~~l~~~l~~~~ 58 (509)
++|.+-+ |.+..||.+|+|..+.++|+|+|++ +.+..+..|...||++|.+-.
T Consensus 16 ~~ftkp~--k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~ 70 (638)
T KOG0560|consen 16 SYFTKPK--KSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGI 70 (638)
T ss_pred cccCCch--HHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCC
Confidence 5788888 9999999999999999999999965 889999999999999997543
|
|
| >cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.17 Score=50.01 Aligned_cols=42 Identities=48% Similarity=0.850 Sum_probs=37.2
Q ss_pred EeeeeccCCCCCCCcEEEEEEEeCC-CCCccCCCCeeEEcccC
Q 010480 114 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 155 (509)
Q Consensus 114 v~~~~~L~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 155 (509)
+++++++|+|++.+++++++|++++ ....|+||.++.|.+++
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 4678999999999999999999875 67899999999998764
|
CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t |
| >PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.33 Score=42.71 Aligned_cols=27 Identities=30% Similarity=0.201 Sum_probs=25.8
Q ss_pred cchhHHHHHhhcCCeecccCcccCCCC
Q 010480 11 INESLFSLLPFAGAKRLVPVGLGDDDQ 37 (509)
Q Consensus 11 ~~k~ld~rL~~LGA~r~~~~g~gDd~~ 37 (509)
.+|+|+++|+++||+++.|++++|+..
T Consensus 106 ~~k~l~~~l~~~G~~~~~~~~~~d~~~ 132 (143)
T PF00258_consen 106 AAKKLDERLEELGAKRVGPLLEIDEAP 132 (143)
T ss_dssp HHHHHHHHHHHTTEEEESSSEEEETTT
T ss_pred HHHHHHHHHHHCCCEEEECcEEEecCC
Confidence 689999999999999999999999987
|
Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A .... |
| >PLN03116 ferredoxin--NADP+ reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.42 E-value=2.8 Score=42.22 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=41.7
Q ss_pred CCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 106 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 106 ~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
...++.++|+..+.++.|.+..++++|.|+.+ ..+.|+||.++.|.++.
T Consensus 21 ~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 21 PKAPYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 69 (307)
T ss_pred CCCCEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCC
Confidence 45677899999999998877788999999976 56899999999998763
|
|
| >cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain | Back alignment and domain information |
|---|
Probab=80.14 E-value=3.9 Score=40.69 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=40.3
Q ss_pred CCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEccc
Q 010480 106 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 154 (509)
Q Consensus 106 ~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~ 154 (509)
.++++.++|+..+.++.++...+++++.|+.+ ..+.|+||.++.|.++
T Consensus 5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHG-GKLPYLEGQSIGIIPP 52 (286)
T ss_pred CCCCeEEEEEeceeccCCCCCcceEEEEEeCC-CcccccCCceEEEECC
Confidence 35677899999999997766678999999974 5789999999999865
|
Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 509 | ||||
| 3qfr_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 Re | 2e-95 | ||
| 3qe2_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 Re | 2e-95 | ||
| 3qfc_A | 618 | Crystal Structure Of Human Nadph-Cytochrome P450 (V | 7e-95 | ||
| 1amo_A | 615 | Three-Dimensional Structure Of Nadph-Cytochrome P45 | 2e-94 | ||
| 3es9_A | 618 | Nadph-Cytochrome P450 Reductase In An Open Conforma | 1e-93 | ||
| 3ojx_A | 622 | Disulfide Crosslinked Cytochrome P450 Reductase Ina | 3e-93 | ||
| 1j9z_A | 622 | Cypor-W677g Length = 622 | 4e-93 | ||
| 1ja0_A | 620 | Cypor-W677x Length = 620 | 4e-93 | ||
| 1ja1_A | 622 | Cypor-Triple Mutant Length = 622 | 1e-92 | ||
| 3fjo_A | 637 | Structure Of Chimeric Yh Cpr Length = 637 | 5e-91 | ||
| 3qfs_A | 458 | Crystal Structure Of Nadph-Cytochrome P450 Reductas | 5e-87 | ||
| 3qft_A | 458 | Crystal Structure Of Nadph-Cytochrome P450 Reductas | 3e-86 | ||
| 2bf4_A | 682 | A Second Fmn-Binding Site In Yeast Nadph-Cytochrome | 3e-55 | ||
| 2bpo_A | 682 | Crystal Structure Of The Yeast Cpr Triple Mutant: D | 3e-55 | ||
| 2qtz_A | 539 | Crystal Structure Of The Nadp+-Bound Fad-Containing | 8e-54 | ||
| 1tll_A | 688 | Crystal Structure Of Rat Neuronal Nitric-Oxide Synt | 3e-53 | ||
| 4dqk_A | 391 | Crystal Structure Of The Fad Binding Domain Of Cyto | 1e-52 | ||
| 2qtl_A | 539 | Crystal Structure Of The Fad-Containing Fnr-Like Mo | 2e-52 | ||
| 4dql_A | 393 | Crystal Structure Of The Fad Binding Domain Of Cyto | 2e-52 | ||
| 1f20_A | 435 | Crystal Structure Of Rat Neuronal Nitric-Oxide Synt | 4e-51 | ||
| 1ddg_A | 374 | Crystal Structure Of Sir-Fp60 Length = 374 | 1e-46 | ||
| 3lo8_A | 311 | Crystal Structure Of The Oxidized Form Of Ferredoxi | 4e-12 | ||
| 3lvb_A | 311 | Crystal Structure Of The Ferredoxin:nadp+ Reductase | 4e-12 | ||
| 1jb9_A | 316 | Crystal Structure Of The Ferredoxin:nadp+ Reductase | 5e-12 | ||
| 3vo1_A | 314 | Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ | 2e-10 | ||
| 2b5o_A | 402 | Ferredoxin-nadp Reductase Length = 402 | 2e-10 | ||
| 3vo2_A | 310 | Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ | 2e-10 | ||
| 1gaq_A | 314 | Crystal Structure Of The Complex Between Ferredoxin | 6e-10 | ||
| 4af6_A | 308 | Pea Fnr L268v Mutant Length = 308 | 4e-09 | ||
| 3mhp_A | 296 | Fnr-Recruitment To The Thylakoid Length = 296 | 5e-09 | ||
| 1qga_A | 308 | Pea Fnr Y308w Mutant In Complex With Nadp+ Length = | 6e-09 | ||
| 1qg0_A | 308 | Wild-type Pea Fnr Length = 308 | 6e-09 | ||
| 1qfy_A | 308 | Pea Fnr Y308s Mutant In Complex With Nadp+ Length = | 6e-09 | ||
| 1w35_A | 304 | Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Leng | 3e-08 | ||
| 1fnb_A | 314 | Refined Crystal Structure Of Spinach Ferredoxin Red | 3e-08 | ||
| 1bx0_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 3e-08 | ||
| 1frq_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 3e-08 | ||
| 1bx1_A | 314 | Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta | 4e-08 | ||
| 1sm4_A | 296 | Crystal Structure Analysis Of The Ferredoxin-Nadp+ | 4e-08 | ||
| 1quf_A | 304 | X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ | 6e-08 | ||
| 1e64_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 8e-08 | ||
| 1frn_A | 314 | The Involvement Of Ser96 In The Catalytic Mechanism | 8e-08 | ||
| 1ewy_A | 303 | Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reduct | 9e-08 | ||
| 2x3u_A | 303 | Ferredoxin-Nadp Reductase Mutant With Tyr 303 Repla | 9e-08 | ||
| 4af7_A | 308 | Pea Fnr C266m Mutant Length = 308 | 9e-08 | ||
| 1go2_A | 304 | Structure Of Ferredoxin-nadp+ Reductase With Lys 72 | 1e-07 | ||
| 1e62_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-07 | ||
| 1ogj_A | 303 | Ferredoxin:nadp+ Reductase Mutant With Leu 263 Repl | 1e-07 | ||
| 1e63_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 1e-07 | ||
| 1w34_A | 304 | Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Lengt | 1e-07 | ||
| 1gr1_A | 303 | Structure Of Ferredoxin-Nadp+ Reductase With Glu 13 | 1e-07 | ||
| 1qh0_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutat | 1e-07 | ||
| 1gjr_A | 304 | Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By | 1e-07 | ||
| 1b2r_A | 304 | Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Leng | 1e-07 | ||
| 1que_A | 303 | X-Ray Structure Of The Ferredoxin:nadp+ Reductase F | 1e-07 | ||
| 1qgy_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla | 2e-07 | ||
| 1bjk_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Arg 264 Repl | 2e-07 | ||
| 1qgz_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Leu 78 Repla | 2e-07 | ||
| 2xnc_A | 315 | Crystal Structure Of An Engineered Ferredoxin Nadp | 2e-07 | ||
| 1bqe_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 2e-07 | ||
| 1h85_A | 295 | Ferredoxin:nadp+ Reductase Mutant With Val 136 Repl | 2e-07 | ||
| 2bsa_A | 303 | Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Compl | 2e-07 | ||
| 2vyq_A | 304 | Ferredoxin:nadp Reductase Mutant With Thr 155 Repla | 3e-07 | ||
| 2bmw_A | 304 | Ferredoxin: Nadp+reductase Mutant With Thr 155 Repl | 5e-07 | ||
| 1h42_A | 304 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 6e-07 | ||
| 1ogi_A | 303 | Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl | 6e-07 | ||
| 2rc5_A | 314 | Refined Structure Of Fnr From Leptospira Interrogan | 9e-07 | ||
| 3jqq_A | 316 | Crystal Structure Of The H286k Mutant Of Ferredoxin | 3e-05 | ||
| 3jqp_A | 316 | Crystal Structure Of The H286l Mutant Of Ferredoxin | 3e-05 | ||
| 2ok7_A | 316 | Ferredoxin-Nadp+ Reductase From Plasmodium Falcipar | 3e-05 | ||
| 1b1c_A | 181 | Crystal Structure Of The Fmn-Binding Domain Of Huma | 1e-04 |
| >pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase (R457h Mutant) Length = 618 | Back alignment and structure |
|
| >pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase Length = 618 | Back alignment and structure |
|
| >pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e Mutant) Length = 618 | Back alignment and structure |
|
| >pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450 Reductase: Prototype For Fmn-And Fad-Containing Enzymes Length = 615 | Back alignment and structure |
|
| >pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation Length = 618 | Back alignment and structure |
|
| >pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive Length = 622 | Back alignment and structure |
|
| >pdb|1J9Z|A Chain A, Cypor-W677g Length = 622 | Back alignment and structure |
|
| >pdb|1JA0|A Chain A, Cypor-W677x Length = 620 | Back alignment and structure |
|
| >pdb|1JA1|A Chain A, Cypor-Triple Mutant Length = 622 | Back alignment and structure |
|
| >pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr Length = 637 | Back alignment and structure |
|
| >pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH Domain) Length = 458 | Back alignment and structure |
|
| >pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH DOMAIN And R457h Mutant) Length = 458 | Back alignment and structure |
|
| >pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450 Reductase Suggests A Novel Mechanism Of Electron Transfer By Diflavin Reductases. Length = 682 | Back alignment and structure |
|
| >pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g, Y75f, K78a. Length = 682 | Back alignment and structure |
|
| >pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539 | Back alignment and structure |
|
| >pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase Reductase Module At 2.3 A Resolution. Length = 688 | Back alignment and structure |
|
| >pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 Length = 391 | Back alignment and structure |
|
| >pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539 | Back alignment and structure |
|
| >pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 In Complex With Nadp+ Length = 393 | Back alignment and structure |
|
| >pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase FadNADP+ Domain At 1.9a Resolution Length = 435 | Back alignment and structure |
|
| >pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60 Length = 374 | Back alignment and structure |
|
| >pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+ Reductase From Maize Root At 1.05 Angstroms Length = 311 | Back alignment and structure |
|
| >pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms - Test Set Withheld Length = 311 | Back alignment and structure |
|
| >pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms Length = 316 | Back alignment and structure |
|
| >pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Ii Length = 314 | Back alignment and structure |
|
| >pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase Length = 402 | Back alignment and structure |
|
| >pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Iii Length = 310 | Back alignment and structure |
|
| >pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 314 | Back alignment and structure |
|
| >pdb|4AF6|A Chain A, Pea Fnr L268v Mutant Length = 308 | Back alignment and structure |
|
| >pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid Length = 296 | Back alignment and structure |
|
| >pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+ Length = 308 | Back alignment and structure |
|
| >pdb|1QG0|A Chain A, Wild-type Pea Fnr Length = 308 | Back alignment and structure |
|
| >pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+ Length = 308 | Back alignment and structure |
|
| >pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Length = 304 | Back alignment and structure |
|
| >pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'- Phospho-5'-Amp Bound States Length = 314 | Back alignment and structure |
|
| >pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312l Length = 314 | Back alignment and structure |
|
| >pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312a Length = 314 | Back alignment and structure |
|
| >pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312q Length = 314 | Back alignment and structure |
|
| >pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+ Reductase From Paprika Length = 296 | Back alignment and structure |
|
| >pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 2.25 Angstroms Length = 304 | Back alignment and structure |
|
| >pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Gln (K75q) Length = 304 | Back alignment and structure |
|
| >pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of Ferredoxin-Nadp+ Reductase: Structure-Function Relationship As Studied By Site-Directed Mutagenesis And X- Ray Crystallography Length = 314 | Back alignment and structure |
|
| >pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase Complex Length = 303 | Back alignment and structure |
|
| >pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By Phe (Y303f) Length = 303 | Back alignment and structure |
|
| >pdb|4AF7|A Chain A, Pea Fnr C266m Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72 Replaced By Glu (k72e) Length = 304 | Back alignment and structure |
|
| >pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Arg (K75r) Length = 304 | Back alignment and structure |
|
| >pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By Pro (L263p) Length = 303 | Back alignment and structure |
|
| >pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Ser (K75s) Length = 304 | Back alignment and structure |
|
| >pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Length = 304 | Back alignment and structure |
|
| >pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139 Replaced By Lys (E139k) Length = 303 | Back alignment and structure |
|
| >pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By Asp And Leu 78 Mutated By Asp Length = 295 | Back alignment and structure |
|
| >pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By Cocrystallization Length = 304 | Back alignment and structure |
|
| >pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Length = 304 | Back alignment and structure |
|
| >pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms Length = 303 | Back alignment and structure |
|
| >pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Glu (K75e) Length = 295 | Back alignment and structure |
|
| >pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By Glu (r264e) Length = 295 | Back alignment and structure |
|
| >pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By Asp (L78d) Length = 295 | Back alignment and structure |
|
| >pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp Reductase (Fnr) From Pisum Sativum Length = 315 | Back alignment and structure |
|
| >pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly (T155g) Length = 295 | Back alignment and structure |
|
| >pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By Leu (V136l) Length = 295 | Back alignment and structure |
|
| >pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed With Nadp Length = 303 | Back alignment and structure |
|
| >pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s) Length = 304 | Back alignment and structure |
|
| >pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro, Arg 264 Replaced By Pro And Gly 265 Replaced By Pro (T155g- A160t-L263p-R264p-G265p) Length = 304 | Back alignment and structure |
|
| >pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro (T155g-A160t-L263p) Length = 304 | Back alignment and structure |
|
| >pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly And Ala 160 Replaced By Thr (T155g-A160t) Length = 303 | Back alignment and structure |
|
| >pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Length = 314 | Back alignment and structure |
|
| >pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum In Complex With 2'p- Amp Length = 316 | Back alignment and structure |
|
| >pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With 2'p-Amp Length = 316 | Back alignment and structure |
|
| >pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With 2'p-Amp Length = 316 | Back alignment and structure |
|
| >pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human Cytochrome P450 Reductase At 1.93a Resolution Length = 181 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 509 | |||
| 3qe2_A | 618 | CPR, P450R, NADPH--cytochrome P450 reductase; cypo | 0.0 | |
| 3qfs_A | 458 | CPR, P450R, NADPH--cytochrome P450 reductase; flav | 0.0 | |
| 2qtl_A | 539 | MSR;, methionine synthase reductase; alpha-beta-al | 0.0 | |
| 1tll_A | 688 | Nitric-oxide synthase, brain; reductase module, FM | 0.0 | |
| 2bpo_A | 682 | CPR, P450R, NADPH-cytochrom P450 reductase; NADPH- | 0.0 | |
| 1f20_A | 435 | Nitric-oxide synthase; nitric-xoide synthase, redu | 0.0 | |
| 4dql_A | 393 | Bifunctional P-450/NADPH-P450 reductase; rossmann | 0.0 | |
| 1ddg_A | 374 | Sulfite reductase (NADPH) flavoprotein alpha- comp | 0.0 | |
| 3lo8_A | 311 | Ferredoxin--NADP reductase; electron transport, ox | 1e-106 | |
| 1fnb_A | 314 | Ferredoxin-NADP+ reductase; oxidoreductase (NADP+( | 1e-106 | |
| 2bmw_A | 304 | Ferredoxin--NADP reductase; oxidoreductase, flavop | 1e-105 | |
| 2rc5_A | 314 | Ferredoxin-NADP reductase; FAD, oxidoreductase; HE | 1e-105 | |
| 2b5o_A | 402 | FNR, ferredoxin--NADP reductase; complex with FAD, | 4e-98 | |
| 3jqq_A | 316 | Ferredoxin NADP reductase; FAD, oxidoreductase; HE | 2e-94 | |
| 1gvh_A | 396 | Flavohemoprotein; oxidoreductase, NADP, heme, flav | 1e-11 | |
| 1cqx_A | 403 | Flavohemoprotein; globin fold, six-stranded antipa | 3e-11 | |
| 3hr4_A | 219 | Nitric oxide synthase, inducible; inducible nitric | 7e-11 | |
| 1bvy_F | 191 | Protein (cytochrome P450 BM-3); fatty acid monooxy | 1e-10 | |
| 1tvc_A | 250 | Methane monooxygenase component C, methane monooxy | 2e-10 | |
| 1krh_A | 338 | Benzoate 1,2-dioxygenase reductase; alpha-beta, FA | 7e-10 | |
| 1qfj_A | 232 | Protein (flavin reductase); riboflavin, ferredoxin | 2e-09 | |
| 2r6h_A | 290 | NADH:ubiquinone oxidoreductase, Na translocating, | 2e-06 | |
| 1ykg_A | 167 | SIR-FP, sulfite reductase [NADPH] flavoprotein alp | 4e-06 | |
| 2qdx_A | 257 | Ferredoxin reductase; oxidoreductase; HET: FAD; 1. | 1e-05 | |
| 2bgi_A | 272 | Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi | 4e-05 | |
| 4fk8_A | 271 | Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st | 1e-04 | |
| 2cnd_A | 270 | NADH-dependent nitrate reductase; nitrate assimila | 4e-04 |
| >3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* Length = 618 | Back alignment and structure |
|---|
Score = 656 bits (1694), Expect = 0.0
Identities = 185/489 (37%), Positives = 284/489 (58%), Gaps = 10/489 (2%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVF 82
GA+R+ +GLGDDD +E+DF WRE W + + S + + +
Sbjct: 137 GAQRIFELGLGDDDGNLEEDFITWREQFWLAVCEHFGVEATGEESSIR-QYELVVHTDID 195
Query: 83 YDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLT 142
+ N +DA++P + V ++L ++R HLE DI+ + +
Sbjct: 196 AAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKL-NQGTERHLMHLELDISDSKIR 254
Query: 143 YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLR 202
YE+GDHV VY N S V + +LG D SL+ E+ P P S R
Sbjct: 255 YESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKK-----HPFPCPTSYR 309
Query: 203 TALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPA--GKDEYAQWIVASQRSLL 260
TALT Y D+ + P+ + L LA +AS+P+E + LR +AS + GK+ Y W+V ++R +L
Sbjct: 310 TALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHIL 369
Query: 261 EVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHK 320
++ + PS +PP+ ++PRLQ RYYSI+SS +V P+ +H+ +V +T GR++K
Sbjct: 370 AILQDCPSLRPPID-HLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINK 428
Query: 321 GLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQER 380
G+ + W++ P+ ++ + P+FVR+S F+LP A P+IM+GPGTG+APF GF+QER
Sbjct: 429 GVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQER 488
Query: 381 FALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQH 440
L++ G E+G +LL++GCR DY+Y +EL F + GAL+QL VAFSRE K YVQH
Sbjct: 489 AWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQH 548
Query: 441 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQM 500
+ + +W ++ GA++YVCGDA++MARDV T + IV E G+++ ++A +K L
Sbjct: 549 LLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMT 608
Query: 501 TGRYLRDVW 509
GRY DVW
Sbjct: 609 KGRYSLDVW 617
|
| >3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* Length = 458 | Back alignment and structure |
|---|
Score = 643 bits (1660), Expect = 0.0
Identities = 176/461 (38%), Positives = 273/461 (59%), Gaps = 14/461 (3%)
Query: 56 NLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS---VGE--KSWGNANGHAVYDAQHPC 110
+ V +I +Y +V + + DA+ +GE + N +DA++P
Sbjct: 4 SHHHHHHSSGLVPRGSHMSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPF 63
Query: 111 RSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS 170
+ V ++L ++R HLE DI+ + + YE+GDHV VY N S V + +LG
Sbjct: 64 LAAVTTNRKL-NQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGAD 122
Query: 171 PDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDP 230
D SL+ E+ P P S RTALT Y D+ + P+ + L LA +AS+P
Sbjct: 123 LDVVMSLNNLDEESNKK-----HPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEP 177
Query: 231 TEADRLRHLASPAG--KDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRY 288
+E + LR +AS +G K+ Y W+V ++R +L ++ + PS +PP+ ++PRLQ RY
Sbjct: 178 SEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPID-HLCELLPRLQARY 236
Query: 289 YSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348
YSI+SS +V P+ +H+ +V +T GR++KG+ + W++ P+ ++ + P+FVR+
Sbjct: 237 YSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRK 296
Query: 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 408
S F+LP A P+IM+GPGTG+APF GF+QER L++ G E+G +LL++GCR DY+Y
Sbjct: 297 SQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLY 356
Query: 409 EDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSM 468
+EL F + GAL+QL VAFSRE K YVQH + + +W ++ GA++YVCGDA++M
Sbjct: 357 REELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNM 416
Query: 469 ARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
ARDV T + IV E G+++ ++A +K L GRY DVW
Sbjct: 417 ARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457
|
| >2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* Length = 539 | Back alignment and structure |
|---|
Score = 615 bits (1589), Expect = 0.0
Identities = 154/530 (29%), Positives = 248/530 (46%), Gaps = 35/530 (6%)
Query: 7 LSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL--DNLLRDDDDP 64
+ + L + R G D + ++ ++ + V E +L R
Sbjct: 17 RTDLVKSELLHIESQVELLRFDDSGRKDSEVLKQNAVNSNQSNVVIEDFESSLTRSVPPL 76
Query: 65 TTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPS 124
+ S EY V + E + +V A + ++ +L T
Sbjct: 77 SQASLNIPGLPPEYLQVH-------LQESLGQEESQVSVTSADPVFQVPISKAVQLTTND 129
Query: 125 SDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDG 184
+ ++ +E DI+ T +Y+ GD V C N V+ L L L + +
Sbjct: 130 AIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLLKIKAD 189
Query: 185 TPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPA 243
T +TLP P CSL+ T ++ + PKK+ L AL + SD E RL+ L S
Sbjct: 190 TKKKGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQ 249
Query: 244 GKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIH 303
G +Y++++ + LL+++ FPS +PPL + + P+LQPR YS +SS P ++H
Sbjct: 250 GAADYSRFVRDACACLLDLLLAFPSCQPPLSLLLEHL-PKLQPRPYSCASSSLFHPGKLH 308
Query: 304 VTCALVYEKTP--TGRVHKGLCSTWMKNSLPMEKSNDCSWA------------PIFVRQS 349
+V + T + KG+C+ W+ + + + IF R +
Sbjct: 309 FVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTT 368
Query: 350 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE--LGPSLLFFGCRNRKMDY 406
N F LP D +PIIM+GPGTG+APF GFLQ R LQE + G LFFGCR++ DY
Sbjct: 369 NSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDY 428
Query: 407 IYEDELNNFVQSGALSQLIVAFSREGPT------KEYVQHKMMEKSSDIWNM-LSEGAYL 459
++ EL +F++ G L+ L V+FSR+ P +YVQ + + + L E ++
Sbjct: 429 LFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHI 488
Query: 460 YVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
YVCGDAK+MA+DVH L I+ ++ ++ +A + L+ RYL+D+W
Sbjct: 489 YVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538
|
| >1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Length = 688 | Back alignment and structure |
|---|
Score = 595 bits (1535), Expect = 0.0
Identities = 154/501 (30%), Positives = 240/501 (47%), Gaps = 24/501 (4%)
Query: 22 AGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVV 81
G +R++ + GD+ E+ F W + V+ ++ DD + P + IS R
Sbjct: 165 LGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDD-VNIEKPNNSLISNDRSW 223
Query: 82 FYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG-TG 140
+ + ++ G + + + + R+ L +P S RS + G
Sbjct: 224 KRNKFRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQE 283
Query: 141 LTYETGDHVGVYCENLSETVEEALSLLGLSPD--TYFSLHTDKEDGTPLG---KSTLPPT 195
L Y+ GDH+GV+ N + V + L +P + +E T LG
Sbjct: 284 LQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESR 343
Query: 196 FPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVAS 255
PPC++ A Y D+ + P L A+ A++ E RL L+ G EY +W
Sbjct: 344 LPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGK 401
Query: 256 QRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT 315
+++EV+ EFPS + P + + LQPRYYSISSSP + P +H+T A+V T
Sbjct: 402 NPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRD 460
Query: 316 --GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAP 372
G VH G+CS+W+ P FVR + +F LP + +VP I++GPGTG+AP
Sbjct: 461 GEGPVHHGVCSSWLNRIQA------DDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAP 514
Query: 373 FRGFLQERFA-LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 431
FR F Q+R +Q G P +L FGCR K+D+IY +E G +L A+SRE
Sbjct: 515 FRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSRE 574
Query: 432 -GPTKEYVQHKMMEKSSD-IWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDS 488
K+YVQ + E+ ++ ++ L E G ++YVCGD MA DV + + I+ +QG L
Sbjct: 575 PDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQQGKLSE 633
Query: 489 SKAESMVKNLQMTGRYLRDVW 509
A + L+ RY D++
Sbjct: 634 EDAGVFISRLRDDNRYHEDIF 654
|
| >2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Length = 682 | Back alignment and structure |
|---|
Score = 577 bits (1489), Expect = 0.0
Identities = 149/529 (28%), Positives = 249/529 (47%), Gaps = 52/529 (9%)
Query: 22 AGAKRLVPVGLGDDDQC-IEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRV 80
AGA RL +G DD ++D+ AW++ + L + L D+ ++ + +
Sbjct: 165 AGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDEQEAKFTSQFQYTVLNEIT 224
Query: 81 VFYDNADASVGE------KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEF 134
+ S + +D P + + +EL + + DR+C H EF
Sbjct: 225 DSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKSRELFSSN-DRNCIHSEF 283
Query: 135 DIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPP 194
D++G+ + Y TGDH+ V+ N E VE+ LS+ L P+T F L PL + P
Sbjct: 284 DLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLK-------PLDPTVKVP 336
Query: 195 TFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVA 254
P ++ A+ Y ++ + +L A + ++L L+ KD++A I +
Sbjct: 337 FPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSK--DKDQFAVEITS 394
Query: 255 SQRSLLEVMSEFPSAKPPLGV---FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE 311
++ + + V F VP++ PRYYSISSS +HVT +
Sbjct: 395 KYFNIADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENF 454
Query: 312 KTPT---GRVHKGLCSTWMKNSLPMEKSNDCSW--------------------APIFVRQ 348
P G+ + ++N + + + + P+ VR+
Sbjct: 455 PNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRR 514
Query: 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE------LGPSLLFFGCRNR 402
SNF+LP++ P+IMIGPGTG+APFRGF++ER A E+ + LG +LF+G RN
Sbjct: 515 SNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNT 574
Query: 403 KMDYIYEDELNNFVQS-GALSQLIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLY 460
D++Y+DE + + +++VA SR K YVQ K+ + ++ M++ GA++Y
Sbjct: 575 D-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIY 633
Query: 461 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
VCGDAK MA+ V L I+ S+ + +A ++K L+ +GRY DVW
Sbjct: 634 VCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682
|
| >1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 Length = 435 | Back alignment and structure |
|---|
Score = 559 bits (1443), Expect = 0.0
Identities = 143/447 (31%), Positives = 218/447 (48%), Gaps = 31/447 (6%)
Query: 76 SEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFD 135
+++R+ + A G + + + + R+ L +P S RS +
Sbjct: 5 NKFRLTYVAEAPDL--------TQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLH 56
Query: 136 IAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSPD--TYFSLHTDKEDGTPLGK--- 189
G L Y+ GDH+GV+ N + V + L +P + +E T LG
Sbjct: 57 TNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISN 116
Query: 190 STLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYA 249
PPC++ A Y D+ + P L A+ A++ E RL L+ G EY
Sbjct: 117 WKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYE 174
Query: 250 QWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV 309
+W +++EV+ EFPS + P + + LQPRYYSISSSP + P +H+T A+V
Sbjct: 175 EWKWGKNPTMVEVLEEFPSIQMPATLLLT-QLSLLQPRYYSISSSPDMYPDEVHLTVAIV 233
Query: 310 YEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGP 366
T G VH G+CS+W+ P FVR + +F LP + +VP I++GP
Sbjct: 234 SYHTRDGEGPVHHGVCSSWLNRIQA------DDVVPCFVRGAPSFHLPRNPQVPCILVGP 287
Query: 367 GTGLAPFRGFLQER-FALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425
GTG+APFR F Q+R F +Q G P +L FGCR K+D+IY +E G +L
Sbjct: 288 GTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELY 347
Query: 426 VAFSRE-GPTKEYVQHKMMEKSSD-IWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQE 482
A+SRE K+YVQ + E+ ++ ++ L E G ++YVCGD MA DV + + I+ +
Sbjct: 348 TAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQ 406
Query: 483 QGSLDSSKAESMVKNLQMTGRYLRDVW 509
QG L A + L+ RY D++
Sbjct: 407 QGKLSEEDAGVFISRLRDDNRYHEDIF 433
|
| >4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* Length = 393 | Back alignment and structure |
|---|
Score = 557 bits (1437), Expect = 0.0
Identities = 134/406 (33%), Positives = 200/406 (49%), Gaps = 19/406 (4%)
Query: 106 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALS 165
+NV KEL P S RS HLE ++ +Y+ GDH+GV N V +
Sbjct: 3 MHGAFSTNVVASKELQQPGSARSTRHLEIELPKEA-SYQEGDHLGVIPRNYEGIVNRVTA 61
Query: 166 LLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAA 225
GL L ++E L L +Y +L ++ L A+AA
Sbjct: 62 RFGLDASQQIRLEAEEEKLAHLP-------LAKTVSVEELLQYVELQDPVTRTQLRAMAA 114
Query: 226 HASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQ 285
P L L K Y + ++A + ++LE++ ++P+ + F A + P ++
Sbjct: 115 KTVCPPHKVELEALLE---KQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALL-PSIR 170
Query: 286 PRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPI 344
PRYYSISSSPRV + +T ++V + +G +KG+ S ++ D I
Sbjct: 171 PRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQE----GDTITCFI 226
Query: 345 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKM 404
QS F LP D + P+IM+GPGTG+APFRGF+Q R L+E G LG + L+FGCR+
Sbjct: 227 STPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHE 286
Query: 405 DYIYEDELNNFVQSGALSQLIVAFSRE-GPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG 463
DY+Y++EL N G ++ L AFSR K YVQH M + + +L +GA+ Y+CG
Sbjct: 287 DYLYQEELENAQSEGIIT-LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICG 345
Query: 464 DAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
D MA V TL + + + A ++ L+ GRY +DVW
Sbjct: 346 DGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVW 391
|
| >1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* Length = 374 | Back alignment and structure |
|---|
Score = 528 bits (1363), Expect = 0.0
Identities = 116/409 (28%), Positives = 210/409 (51%), Gaps = 39/409 (9%)
Query: 102 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVE 161
+ Y P ++++V +++ +S++ H+E D+ +GL Y+ GD +GV+ +N V+
Sbjct: 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVK 63
Query: 162 EALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALL 221
E + LL L D ++ L AL + +L +
Sbjct: 64 ELVELLWLKGDEPVTVEGK-----------------TLPLNEALQWHFELTVNTAN---- 102
Query: 222 ALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIV 281
+ + + T ++ L L K + + A+ +++++ F A+ ++
Sbjct: 103 -IVENYATLTRSETLLPLVGD--KAKLQHY--AATTPIVDMV-RFSPAQLDAEALIN-LL 155
Query: 282 PRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 341
L PR YSI+SS + +HVT +V GR G S+++ + + E
Sbjct: 156 RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEE-----GE 209
Query: 342 APIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCR 400
+F+ + NF+LPA+ + P+IMIGPGTG+APFR F+Q+R A G + LFFG
Sbjct: 210 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQR----AADEAPGKNWLFFGNP 265
Query: 401 NRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLY 460
+ D++Y+ E +V+ G L+++ +A+SR+ K YVQ K+ E+ +++W +++GA++Y
Sbjct: 266 HFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIY 325
Query: 461 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
VCGDA MA+DV + L ++ E G +D+ A+ + L++ RY RDV+
Sbjct: 326 VCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 374
|
| >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311 | Back alignment and structure |
|---|
Score = 319 bits (819), Expect = e-106
Identities = 67/283 (23%), Positives = 104/283 (36%), Gaps = 27/283 (9%)
Query: 242 PAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSR 301
IV + P G R YSI+S+
Sbjct: 41 GPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFD 100
Query: 302 IHVTCALV----YEKTPT---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKL 353
V Y T G+CS ++ NS P +K + L
Sbjct: 101 GRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKI------QLTGPSGKIMLL 154
Query: 354 PA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GPSLLFFGCRNRKMDYIYEDE 411
P D IMI GTG+APFRG+L+ F G + LF G N +Y++E
Sbjct: 155 PEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEE 213
Query: 412 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK 466
++++ + A SRE K YVQ K+ E S +I+ +L GA++Y CG K
Sbjct: 214 FTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-K 272
Query: 467 SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
M + TL + + +G + + L+ ++ +V+
Sbjct: 273 GMMPGIQDTLKKVAERRG----ESWDQKLAQLKKNKQWHVEVY 311
|
| >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* Length = 314 | Back alignment and structure |
|---|
Score = 317 bits (815), Expect = e-106
Identities = 58/282 (20%), Positives = 108/282 (38%), Gaps = 26/282 (9%)
Query: 239 LASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV- 297
+ E + + + + E S + R YSI+SS
Sbjct: 48 ITGDDAPGETWHMVFSHEGEI--PYREGQSVGVIPD-GEDKNGKPHKLRLYSIASSALGD 104
Query: 298 --APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLP 354
+ + + G KG+CS ++ + P + + +P
Sbjct: 105 FGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEV------KLTGPVGKEMLMP 158
Query: 355 ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-GPSLLFFGCRNRKMDYIYEDELN 413
D IIM+G GTG+APFR FL + F + + G + LF G +Y++E
Sbjct: 159 KDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFE 217
Query: 414 NFVQSGALS-QLIVAFSREGPT----KEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKS 467
+ + +L A SRE K Y+Q +M + + ++W ML + Y+Y+CG K
Sbjct: 218 KMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCG-LKG 276
Query: 468 MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
M + + + ++ +G + L+ ++ +V+
Sbjct: 277 MEKGIDDIMVSLAAAEG----IDWIEYKRQLKKAEQWNVEVY 314
|
| >2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = e-105
Identities = 62/289 (21%), Positives = 106/289 (36%), Gaps = 30/289 (10%)
Query: 237 RHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP- 295
L G L+ E S + R YSI+S+
Sbjct: 30 EPLVKEGGIGIVQHIKFDLTGGNLK-YIEGQSIGIIP-PGVDKNGKPEKLRLYSIASTRH 87
Query: 296 --RVAPSRIHVTCALV-YEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNF 351
V I + + Y+ +G G+CST++ + P + I
Sbjct: 88 GDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE------VKITGPVGKEM 141
Query: 352 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-----GPSLLFFGCRNRKMDY 406
LP D + +IM+ GTG+ P R +L F E A G S L FG +
Sbjct: 142 LLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NI 200
Query: 407 IYEDELNNFVQSGALS-QLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLY 460
+Y++EL Q + +L A SRE + Y+Q ++ E + +W ++ ++ + Y
Sbjct: 201 LYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTY 260
Query: 461 VCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
+CG M + L ++G K+L+ GR+ + +
Sbjct: 261 ICGPPP-MEEGIDAALSAAAAKEG----VTWSDYQKDLKKAGRWHVETY 304
|
| >2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = e-105
Identities = 54/258 (20%), Positives = 91/258 (35%), Gaps = 24/258 (9%)
Query: 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP---RVAPSRIHVTCALVYEKTPTGRVH 319
P + P R YSI+S + I G +
Sbjct: 70 GGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQ 129
Query: 320 -KGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLP-ADAKVPIIMIGPGTGLAPFRGF 376
KG+CS +M + P ++ + F LP D I+ + GTG+APF G
Sbjct: 130 FKGVCSNYMCDLKPGDEV------TMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGM 183
Query: 377 LQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--- 433
+E + G L +G + + D L +LI A SRE
Sbjct: 184 SEELLEHKLIKFT-GNITLVYGAPYSD-ELVMMDYLKGLESKHKNFKLITAISREEKNSF 241
Query: 434 --TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 491
+ Y+ H++ E++ + +L+ G Y+CG K M + V + I G+
Sbjct: 242 DGGRMYISHRVREQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTGT-----Y 296
Query: 492 ESMVKNLQMTGRYLRDVW 509
E +L+ + + +
Sbjct: 297 EEFKHHLEGAHQLFVETY 314
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402 | Back alignment and structure |
|---|
Score = 301 bits (771), Expect = 4e-98
Identities = 70/372 (18%), Positives = 127/372 (34%), Gaps = 31/372 (8%)
Query: 151 VYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP-PTFPPCSLRTALTKYA 209
V +++ ++ ++ LG + + + S P S +
Sbjct: 49 VPYARMNQEMQR-ITKLGGKIVSIRPAEDAAQIVSEGQSSAQASAQSPMASSTKIVHPKT 107
Query: 210 DLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSA 269
S P + L G L +
Sbjct: 108 TDTSVPVNIYRPKTPFLG---KCIENYE-LVDEGGSGTVRHVTFDISEGDLRYLEGQSIG 163
Query: 270 KPPLGVFFAAIVPRLQPRYYSISSSPR---VAPSRIHVTCALV-YEKTPTGRVHKGLCST 325
P + R YSI+S+ + + + Y+ +G G+CST
Sbjct: 164 IIP--PGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCST 221
Query: 326 WMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 384
++ N I LP D ++M+ GTG+APFR FL F Q
Sbjct: 222 YLCNLPV-----GTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQ 276
Query: 385 -EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLIVAFSREGPT----KEYV 438
E G + L FG + +Y+D+ + +L A SRE T K YV
Sbjct: 277 HEDYKFKGKAWLIFGVPYTA-NILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYV 335
Query: 439 QHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 497
Q ++ E + +++ M+ + ++Y+CG K M + T +++G E M ++
Sbjct: 336 QSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRG----LNWEEMRRS 390
Query: 498 LQMTGRYLRDVW 509
++ R+ +V+
Sbjct: 391 MKKEHRWHVEVY 402
|
| >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316 | Back alignment and structure |
|---|
Score = 288 bits (738), Expect = 2e-94
Identities = 53/268 (19%), Positives = 95/268 (35%), Gaps = 38/268 (14%)
Query: 257 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT- 315
+++ + + I + R YSISSS + + + +
Sbjct: 72 NKDHNIINTTNHTNHN-NIALSHIKKQRCARLYSISSSNNMENLSVAIKIHKYEQTENAP 130
Query: 316 GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPAD---AKVPIIMIGPGTGLAP 372
+ G CS ++KN + + F LP D I I GTG++P
Sbjct: 131 NITNYGYCSGFIKNLKINDD------IYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISP 184
Query: 373 FRGFLQERFA------LQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLI 425
+ FL++ FA G +++G N +Y +EL F + + +
Sbjct: 185 YISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLNELEYFQKMYPNNINIH 243
Query: 426 VAFSRE---GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQ 481
FS + T YVQ ++ ++ ++ N+ + LY+CG KS+ V L +
Sbjct: 244 YVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDIL----K 298
Query: 482 EQGSLDSSKAESMVKNLQMTGRYLRDVW 509
D K R +V+
Sbjct: 299 SHDQFDEKKK----------KRVHVEVY 316
|
| >1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 43/276 (15%), Positives = 81/276 (29%), Gaps = 41/276 (14%)
Query: 219 ALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEF----------PS 268
A LA + + + G + + + ++ +++ F
Sbjct: 123 AYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAE 182
Query: 269 AKP----PLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCS 324
+P + + + + R YS++ P RI V K R G S
Sbjct: 183 YRPGQYLGVWLKPEGFPHQ-EIRQYSLTRKPDGKGYRIAV-------K----REEGGQVS 230
Query: 325 TWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 384
W+ N + AP +F + P+ +I G G P L L
Sbjct: 231 NWLHNHANVGDVVKLV-AP----AGDFFMAVADDTPVTLISAGVGQTPMLAMLD---TLA 282
Query: 385 EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR----EGPTKEYVQH 440
+AG F N + + DE+ QS + + + ++
Sbjct: 283 KAGHT-AQVNWFHAAENGD-VHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSE 340
Query: 441 KMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 476
+M+ S Y+CG + + L
Sbjct: 341 GLMDLSKLEGAFSDPTMQFYLCG-PVGFMQFTAKQL 375
|
| >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 59/300 (19%), Positives = 106/300 (35%), Gaps = 42/300 (14%)
Query: 200 SLRTALTKYADLLSSPK-----KSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVA 254
L A+ + ++ A LA R P G + +++
Sbjct: 101 HLLAAIKEVLGNAATDDIISAWAQAYGNLADVLMGMESELYERSAEQPGGWKGWRTFVIR 160
Query: 255 SQRSLLEVMSEF----------PSAKP----PLGVFFAAIVPRLQPRYYSISSSPRVAPS 300
+R +V++ F + +P + + A+ + Q R YS+S P
Sbjct: 161 EKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQ-QIRQYSLSDMPNGRTY 219
Query: 301 RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVP 360
RI V ++ G G S + + + + + AP +F + DAK P
Sbjct: 220 RISV------KREGGGPQPPGYVSNLLHDHVNVGDQVKLA-AP----YGSFHIDVDAKTP 268
Query: 361 IIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 420
I++I G GL P L + ALQ ++ + G RN + D L ++
Sbjct: 269 IVLISGGVGLTPMVSML--KVALQAPPRQV---VFVHGARNSA-VHAMRDRLREAAKTYE 322
Query: 421 LSQLIVAFSREGPT----KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 476
L V + + P ++Y +++ ++L A Y+CG R H L
Sbjct: 323 NLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICG-PIPFMRMQHDAL 381
|
| >3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, alternative splicing, calcium, calmodulin-binding, FAD, FMN, heme, iron, metal-binding; HET: FMN; 2.50A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 7e-11
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL-DNLLRDDDDPTTVSTPYTAAIS----E 77
GA +L P+G GD+ ED F +W + + + YT+ ++
Sbjct: 153 GASQLTPMGEGDELSGQEDAFRSWAVQTFKAACETFDVRGKQHIQIPKLYTSNVTWDPHH 212
Query: 78 YRVV 81
YR+V
Sbjct: 213 YRLV 216
|
| >1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 Length = 191 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 15 LFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL-----RDDDDPTTVST 69
+ L GA+ + G D E + WRE +W ++ +D+ +T+S
Sbjct: 127 IDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSL 186
Query: 70 PY 71
+
Sbjct: 187 QF 188
|
| >1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 34/186 (18%)
Query: 285 QPRYYSISSSPRVAPS-RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 343
R YS ++ P + + +G S +++N +
Sbjct: 59 VSRSYSPANLPNPEGRLEFLI-----------RVLPEGRFSDYLRNDA---RVGQ----V 100
Query: 344 IFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRN 401
+ V+ F L P + GTGLAP +++ +QE A + ++FG
Sbjct: 101 LSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQ---MQEWTAP-NETRIYFGVNT 156
Query: 402 RKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKE----YVQHKMMEKSSDIWNMLSEGA 457
+ Y DEL + +S + E + E D+ + +
Sbjct: 157 EP-ELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALRE---DLESSDANPD 212
Query: 458 YLYVCG 463
Y+CG
Sbjct: 213 I-YLCG 217
|
| >1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 7e-10
Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 35/197 (17%)
Query: 285 QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 344
+ R YS SS P + V V +G S ++ K+ D +
Sbjct: 154 ETRSYSFSSQPGNRLTGFVVR-----------NVPQGKMSEYLSVQA---KAGD----KM 195
Query: 345 FVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 402
+F L D K P++M+ GTG+APF LQ L++ G+E P L FG
Sbjct: 196 SFTGPFGSFYLR-DVKRPVLMLAGGTGIAPFLSMLQ---VLEQKGSE-HPVRLVFGVTQD 250
Query: 403 KMDYIYEDELNNFVQSGALSQLIVAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAYL 459
D + ++L+ Q + + K YV + + +
Sbjct: 251 C-DLVALEQLDALQQKLPWFEYRTVVAHAESQHERKGYVTGHIEYDWLNG-----GEVDV 304
Query: 460 YVCGDAKSMARDVHRTL 476
Y+CG M V L
Sbjct: 305 YLCG-PVPMVEAVRSWL 320
|
| >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 33/221 (14%), Positives = 63/221 (28%), Gaps = 44/221 (19%)
Query: 270 KPPLGVFFAA------IVPRLQPRYYSISSSPRVAPSRI--HVTCALVYEKTPTGRVHKG 321
P F A ++ R +S++S+P I H+ G
Sbjct: 23 VPDAAFSFRAGQYLMVVMDERDKRPFSMASTPD-EKGFIELHI-----------GASEIN 70
Query: 322 LCSTWMKNSLPMEKSNDCSWAPIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQE 379
L + + + + + I V L D + P+I+I GTG + R L
Sbjct: 71 LYAKAVMDRI---LKDH----QIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLT 123
Query: 380 RFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKE--- 436
+++G R + EL Q++ +
Sbjct: 124 ---ALARNPN-RDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRT 178
Query: 437 -YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 476
V +++ + +Y+ G MA+
Sbjct: 179 GTVLTAVLQDHGTL-----AEHDIYIAG-RFEMAKIARDLF 213
|
| >2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 28/206 (13%)
Query: 285 QPRYYSISSSPRVAPS-RIHVTCALVYEKTPTG----RVHKGLCSTWMKNSLPMEKSNDC 339
R YS+++ P ++V A + G+ S+++ + P +K
Sbjct: 85 TVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDK---- 140
Query: 340 SWAPIFVR--QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFF 397
+ + +F + D ++ IG G G+AP R + F + G ++
Sbjct: 141 ----VMMSGPYGDFHIQ-DTDAEMLYIGGGAGMAPLRAQILHLFRTLKTG---RKVSYWY 192
Query: 398 GCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT------KEYVQHKMMEKSSDIWN 451
G R++ + YE++ + + +A S P ++ + + +
Sbjct: 193 GARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIYDNYLKDHD 251
Query: 452 MLSEGAYLYVCGDAKSMARDVHRTLH 477
+ Y Y+CG MA V L
Sbjct: 252 APEDIEY-YMCG-PGPMANAVKGMLE 275
|
| >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 Length = 167 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVS 68
G +RL+ D + + S WR V L + +V+
Sbjct: 124 GGERLLDRVDADVE--YQAAASEWRARVVDALKSRAPVAAPSQSVA 167
|
| >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 20/131 (15%)
Query: 287 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346
R YSI+S +V G ++ +++ +++ ++ +
Sbjct: 50 RAYSIASPNYEEHLEFFSI-----------KVPDGPLTSRLQH---LKEGDELMVSRKPT 95
Query: 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 406
K + ++ GTG+APF +Q+ + +L G R +
Sbjct: 96 GTLVHDDLLPGK-HLYLLSTGTGMAPFLSVIQDPETYERY----EKVILVHGVRWVS-EL 149
Query: 407 IYEDELNNFVQ 417
Y D + +
Sbjct: 150 AYADFITKVLP 160
|
| >2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 37/207 (17%), Positives = 66/207 (31%), Gaps = 34/207 (16%)
Query: 283 RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA 342
+ R YSI+S + +V G ++ +++ ++
Sbjct: 60 KPIMRAYSIASPAWDEELEFYSI-----------KVPDGPLTSRLQH---IKVGEQIILR 105
Query: 343 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNR 402
P V K + + GTG+APF ++E EA + ++ CR
Sbjct: 106 PKPVGTLVIDALLPGK-RLWFLATGTGIAPFASLMREP----EAYEKFDEVIMMHACRTV 160
Query: 403 KMDYIYEDELNNFVQSGALSQLIVA-------------FSREGPTKEYVQHKMMEKSSDI 449
+ Y +L +Q L +V F G + + + + I
Sbjct: 161 A-ELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGI 219
Query: 450 WNMLSEGAYLYVCGDAKSMARDVHRTL 476
M E VCG + DV + L
Sbjct: 220 APMNPETDRAMVCGSL-AFNVDVMKVL 245
|
| >4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 34/203 (16%)
Query: 287 RYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346
R YSI S +V G ++ +++ ++ +
Sbjct: 66 RAYSIVSPNYEEHLEFFSI-----------KVQNGPLTSRLQH---LKVGDPVLIGKKPT 111
Query: 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 406
K + M+ GTGLAPF +++ + +L CR + +
Sbjct: 112 GTLVADNLLPGK-TLWMLSTGTGLAPFMSIIRD----PDIYERFDKVVLTHTCRLKG-EL 165
Query: 407 IYEDELNNFVQSGALSQLIVAF--------SRE-----GPTKEYVQHKMMEKSSDIWNML 453
Y D + + + ++ +RE G + + + D+
Sbjct: 166 AYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEFENEGRITDLIASGKLFTDLDMPPFS 225
Query: 454 SEGAYLYVCGDAKSMARDVHRTL 476
E + +CG +M +D L
Sbjct: 226 PEQDRVMLCGST-AMLKDTTELL 247
|
| >2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 28/219 (12%)
Query: 265 EFPSAKPPLGV-------FFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR 317
PS LG+ A I +L R Y+ +S + VY K +
Sbjct: 33 SLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVD-EIGHFDLLVK-VYFKNEHPK 90
Query: 318 VHKGLCSTWMKNSLP---MEKSNDCSWAPIFVRQSNFKLPADAKVP--IIMIGPGTGLAP 372
G T +SLP + + +F + + + MI G+G+ P
Sbjct: 91 FPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITP 150
Query: 373 FRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ--SGALSQLIVAFSR 430
+ + L++ + L + R D + DEL+ + L V
Sbjct: 151 MYQII--QAVLRDQPEDHTEMHLVYANRTED-DILLRDELDRWAAEYPDRLKVWYVIDQV 207
Query: 431 EGPTKE------YVQHKMMEKSSDIWNMLSEGAYLYVCG 463
+ P + +V ++ + + CG
Sbjct: 208 KRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACG 243
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 509 | |||
| 3qe2_A | 618 | CPR, P450R, NADPH--cytochrome P450 reductase; cypo | 100.0 | |
| 2bpo_A | 682 | CPR, P450R, NADPH-cytochrom P450 reductase; NADPH- | 100.0 | |
| 3qfs_A | 458 | CPR, P450R, NADPH--cytochrome P450 reductase; flav | 100.0 | |
| 1tll_A | 688 | Nitric-oxide synthase, brain; reductase module, FM | 100.0 | |
| 2qtl_A | 539 | MSR;, methionine synthase reductase; alpha-beta-al | 100.0 | |
| 4dql_A | 393 | Bifunctional P-450/NADPH-P450 reductase; rossmann | 100.0 | |
| 1f20_A | 435 | Nitric-oxide synthase; nitric-xoide synthase, redu | 100.0 | |
| 1ddg_A | 374 | Sulfite reductase (NADPH) flavoprotein alpha- comp | 100.0 | |
| 1fnb_A | 314 | Ferredoxin-NADP+ reductase; oxidoreductase (NADP+( | 100.0 | |
| 2bmw_A | 304 | Ferredoxin--NADP reductase; oxidoreductase, flavop | 100.0 | |
| 2b5o_A | 402 | FNR, ferredoxin--NADP reductase; complex with FAD, | 100.0 | |
| 3vo2_A | 310 | Putative uncharacterized protein; rossmann fold, o | 100.0 | |
| 2rc5_A | 314 | Ferredoxin-NADP reductase; FAD, oxidoreductase; HE | 100.0 | |
| 3lo8_A | 311 | Ferredoxin--NADP reductase; electron transport, ox | 100.0 | |
| 3jqq_A | 316 | Ferredoxin NADP reductase; FAD, oxidoreductase; HE | 100.0 | |
| 1tvc_A | 250 | Methane monooxygenase component C, methane monooxy | 99.94 | |
| 1qfj_A | 232 | Protein (flavin reductase); riboflavin, ferredoxin | 99.94 | |
| 2r6h_A | 290 | NADH:ubiquinone oxidoreductase, Na translocating, | 99.93 | |
| 2eix_A | 243 | NADH-cytochrome B5 reductase; flavoprotein, FAD-bi | 99.93 | |
| 1fdr_A | 248 | Flavodoxin reductase; ferredoxin reductase, flavin | 99.93 | |
| 1krh_A | 338 | Benzoate 1,2-dioxygenase reductase; alpha-beta, FA | 99.93 | |
| 1umk_A | 275 | B5R, NADH-cytochrome B5 reductase; flavoprotein, b | 99.93 | |
| 4fk8_A | 271 | Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st | 99.92 | |
| 4eh1_A | 243 | Flavohemoprotein; structural genomics, niaid, nati | 99.92 | |
| 1gvh_A | 396 | Flavohemoprotein; oxidoreductase, NADP, heme, flav | 99.92 | |
| 2bgi_A | 272 | Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi | 99.92 | |
| 4g1v_A | 399 | Flavohemoglobin; three domains: globin fold, antip | 99.92 | |
| 1ep3_B | 262 | Dihydroorotate dehydrogenase B (PYRK subunit); het | 99.91 | |
| 2qdx_A | 257 | Ferredoxin reductase; oxidoreductase; HET: FAD; 1. | 99.91 | |
| 1cqx_A | 403 | Flavohemoprotein; globin fold, six-stranded antipa | 99.91 | |
| 2cnd_A | 270 | NADH-dependent nitrate reductase; nitrate assimila | 99.91 | |
| 2pia_A | 321 | Phthalate dioxygenase reductase; HET: FMN; 2.00A { | 99.89 | |
| 2gpj_A | 252 | Siderophore-interacting protein; structural genomi | 99.77 | |
| 3a1f_A | 186 | Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi | 99.7 | |
| 3lyu_A | 142 | Putative hydrogenase; the C-terminal has AN alpha- | 99.69 | |
| 3lrx_A | 158 | Putative hydrogenase; alpha-beta protein, structur | 99.69 | |
| 3hr4_A | 219 | Nitric oxide synthase, inducible; inducible nitric | 98.91 | |
| 1bvy_F | 191 | Protein (cytochrome P450 BM-3); fatty acid monooxy | 97.9 | |
| 2hna_A | 147 | Protein MIOC, flavodoxin; alpha-beta sandwich, fla | 97.29 | |
| 1ykg_A | 167 | SIR-FP, sulfite reductase [NADPH] flavoprotein alp | 96.97 | |
| 2wc1_A | 182 | Flavodoxin; electron transport, flavoprotein; HET: | 95.24 | |
| 3f6r_A | 148 | Flavodoxin; FMN binding, oxidized, electron transp | 91.11 | |
| 1f4p_A | 147 | Flavodoxin; electron transport, flavoprotein, FMN, | 90.13 | |
| 3vo2_A | 310 | Putative uncharacterized protein; rossmann fold, o | 88.0 | |
| 1ag9_A | 175 | Flavodoxin; electron transport, reductive activati | 86.22 |
| >3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-94 Score=784.91 Aligned_cols=489 Identities=40% Similarity=0.740 Sum_probs=421.6
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEec
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYD 84 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (509)
+||+|| |++|++|++|||++++|+|+||++.++|++|++|++.||++|++.++.+... . . ...+.+++....
T Consensus 121 ~f~~~~--k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~--~-~---~~~~~~~~~~~~ 192 (618)
T 3qe2_A 121 HFNAMG--KYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLAVCEHFGVEATG--E-E---SSIRQYELVVHT 192 (618)
T ss_dssp STTHHH--HHHHHHHHHTTCEESSCCEEEETTSCHHHHHHHHHHHHHHHHHHHHTCCCC---------CCCCSEEEEECT
T ss_pred hHhHHH--HHHHHHHHhCCCCEeecccccccCCCcHHHHHHHHHHHHHHHHHHhCCCccc--c-c---ccccceeEEecc
Confidence 599999 9999999999999999999999999999999999999999999988643211 0 0 122455555432
Q ss_pred CCCcc---cccc-c-cCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHH
Q 010480 85 NADAS---VGEK-S-WGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSET 159 (509)
Q Consensus 85 ~~~~~---~~~~-~-~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~ 159 (509)
..... ..+. . ........+++.++|+.|+|++|++|+. +++++|+||+|++++++++|+|||+|+|+|.|+++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~~Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~ 271 (618)
T 3qe2_A 193 DIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSAL 271 (618)
T ss_dssp TCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEEECSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHH
T ss_pred cccccccccccccccccccccCCCcccCCcEEEEEEeEEEcCC-CCCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHH
Confidence 11100 0000 0 0111223456678899999999999985 678999999999998899999999999999999999
Q ss_pred HHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHH
Q 010480 160 VEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRH 238 (509)
Q Consensus 160 V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~ 238 (509)
|+++|++||+++|+.|++...... ...+.|+| |+|++++|++|+||+++|+++||+.||+||+|+.||++|++
T Consensus 272 V~~~l~~l~l~~d~~v~~~~~~~~------~~~~~~~p~~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~ 345 (618)
T 3qe2_A 272 VNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRK 345 (618)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCTT------CSCCSSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEecCCcc------ccCCCCCCCceEHHHhhhhEeecCCCCcHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999754321 12345788 99999999999999999999999999999999999999999
Q ss_pred hc--CccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCC
Q 010480 239 LA--SPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG 316 (509)
Q Consensus 239 l~--~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~ 316 (509)
|+ +++|+++|++|+.+++++++|||++||++++|+++|++. +|+++||+|||||+|..++++++|+|+++.+.++.+
T Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l~~~-lp~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~ 424 (618)
T 3qe2_A 346 MASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAG 424 (618)
T ss_dssp TTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTS
T ss_pred hhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHHh-ccccccceeccccCCcCCCCEEEEEEEEEEEecCCC
Confidence 99 678899999999999999999999999999999999986 599999999999999877899999999999988888
Q ss_pred ccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEE
Q 010480 317 RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLF 396 (509)
Q Consensus 317 ~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~ 396 (509)
+.+.|+||+||+++.+.|+......++|++|.|.|++|.++.+|+||||+|||||||+||+++++.....+...++++||
T Consensus 425 ~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~ 504 (618)
T 3qe2_A 425 RINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLY 504 (618)
T ss_dssp CEEECHHHHHHHTCCCC-----CCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEE
T ss_pred CCCCCcccHHHHhhcccCCCCcceEEEEEEecCcccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 89999999999999883320001258899999999999888899999999999999999999998765444345789999
Q ss_pred EeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHH
Q 010480 397 FGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL 476 (509)
Q Consensus 397 ~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L 476 (509)
||||+++.|++|++||++|.+.+.+++++++|||+++.++|||+++.++.+.+++++.++++||||||+..|+++|.++|
T Consensus 505 ~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~k~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L 584 (618)
T 3qe2_A 505 YGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTF 584 (618)
T ss_dssp EEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHH
T ss_pred EecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCCCCCcHHHHHHHhHHHHHHHHhCCcEEEEECCchHHHHHHHHHH
Confidence 99999955999999999999989888999999999888999999999999899988877899999999448999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 477 HTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 477 ~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
.+++.+++++++++|++|+++|+++|||++|||
T Consensus 585 ~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 585 YDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617 (618)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 999999999999999999999999999999999
|
| >2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-88 Score=743.32 Aligned_cols=483 Identities=32% Similarity=0.583 Sum_probs=409.0
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCC-CchhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCcccccceEEEEe
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ-CIEDDFSAWRELVWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFY 83 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~-~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (509)
+||+|| |+|+++|+++||+++.|+|+||++. +++++|++|.+.||++|++.++.+... . ...+.+.+...
T Consensus 150 ~f~~a~--k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~~~~~W~~~l~~~l~~~~~~~~~~-~------~~~~~~~~~~~ 220 (682)
T 2bpo_A 150 FFNGAA--KKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDEQE-A------KFTSQFQYTVL 220 (682)
T ss_dssp STTHHH--HHHHHHHHHTTCEECSCCEEEETTTTCHHHHHHHHHHHHHHHHHHHTTCCCCC-C------CCCCSBCCEEC
T ss_pred hHhHHH--HHHHHHHHHCCCeEeECcEEEecCCcccHHHHHHHHHHHHHHHHhhcCCcccc-c------ccCCcceeEec
Confidence 699999 9999999999999999999999984 899999999999999999887533211 0 01122333222
Q ss_pred cC--CCccccccc---cCC--------CCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeE
Q 010480 84 DN--ADASVGEKS---WGN--------ANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVG 150 (509)
Q Consensus 84 ~~--~~~~~~~~~---~~~--------~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~ 150 (509)
.. ......+.. ... .+....++.++|+.|+|++|++|+. +++|+|+||+|++++++++|+|||+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~ 299 (682)
T 2bpo_A 221 NEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLA 299 (682)
T ss_dssp SSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTBCCCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEE
T ss_pred ccCCccccccCccccccccccccccccccccCcccCCCceEEEEEEEEEccC-CCCCCEEEEEEEcCCCCceecCCCEEE
Confidence 11 000000000 000 0122345677899999999999998 889999999999988899999999999
Q ss_pred EcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCC
Q 010480 151 VYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASD 229 (509)
Q Consensus 151 i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~ 229 (509)
|||.|+++.|+++|++||+++|+.|++..... ..+.|+| |+|++++|++|+||+++|++.||+.||.||+|
T Consensus 300 V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~--------~~~~p~p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~ 371 (682)
T 2bpo_A 300 VWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP--------TVKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPN 371 (682)
T ss_dssp ECCCCCHHHHHHHHHHHTCCTTCEEECCBSST--------TCCCSSCSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSS
T ss_pred EEcCCCHHHHHHHHHHhhccCCcEEEEecCCc--------ccCCCCCCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCC
Confidence 99999999999999999999999998864322 1345788 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC----CCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEE
Q 010480 230 PTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP----SAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVT 305 (509)
Q Consensus 230 ~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp----s~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~lt 305 (509)
+.||++|++|+ +|+++|.+|+.+.++|++|||.+|| ++++|++++++. +|+++||+|||||+|..+++.++|+
T Consensus 372 ~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~lt 448 (682)
T 2bpo_A 372 ADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQFLVES-VPQMTPRYYSISSSSLSEKQTVHVT 448 (682)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTSCHHHHHHH-SCBCCCEEEEBCSCTTTCTTEEEEE
T ss_pred HHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCcccccCCCHHHHHHh-CcccccccccccCCcccCCCeEEEE
Confidence 99999999999 6999999999999999999999999 899999999976 5999999999999998767999999
Q ss_pred EEEEEeeCCC---CccccCcCchhhhhcCCC-----------ccCC---------CCceeeEEEecCCCCCCCCCCCCEE
Q 010480 306 CALVYEKTPT---GRVHKGLCSTWMKNSLPM-----------EKSN---------DCSWAPIFVRQSNFKLPADAKVPII 362 (509)
Q Consensus 306 v~~v~~~~~~---~~~~~G~~S~~L~~~~~~-----------~~~~---------~~~~v~v~~~~g~F~lp~~~~~pii 362 (509)
|+++.+.++. ++.+.|+||+||+++.++ |+.. .+..++++++.+.|.+|.++.+|+|
T Consensus 449 v~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piI 528 (682)
T 2bpo_A 449 SIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVI 528 (682)
T ss_dssp EECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEE
T ss_pred EEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEE
Confidence 9998887775 677899999999987662 1111 0125778888889999987789999
Q ss_pred EEccCCccchhHHHHHHHHHHHh------hcCCCCCeEEEEeccCCCCccccHHHHHHHH-HcCCcCeEEEEEec-CCCC
Q 010480 363 MIGPGTGLAPFRGFLQERFALQE------AGAELGPSLLFFGCRNRKMDYIYEDELNNFV-QSGALSQLIVAFSR-EGPT 434 (509)
Q Consensus 363 ~Ia~GtGIAP~~s~l~~~~~~~~------~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~-~~~~~~~~~~a~Sr-~~~~ 434 (509)
|||+|||||||+||++++...+. .+...++++||||||++. |++|++||++|+ +.+.+++++++||| +++.
T Consensus 529 mIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~-D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~ 607 (682)
T 2bpo_A 529 MIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTD-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTK 607 (682)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSS-SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSC
T ss_pred EEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChh-hhhhHHHHHHHHHhcCCceEEEEEECCCCCCC
Confidence 99999999999999999987654 233357999999999995 999999999995 45777799999999 5667
Q ss_pred cccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 435 KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 435 ~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++|||++|.++.+.+++++.++++||||||++.|+++|.++|.+++.+++++++++|++|+++|+++|||++|||
T Consensus 608 k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 608 KVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp CCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 999999999998899998877899999999668999999999999999999999999999999999999999999
|
| >3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-87 Score=700.80 Aligned_cols=429 Identities=41% Similarity=0.767 Sum_probs=376.4
Q ss_pred ccccceEEEEecCCCcc---ccccc--cCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCC
Q 010480 73 AAISEYRVVFYDNADAS---VGEKS--WGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGD 147 (509)
Q Consensus 73 ~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD 147 (509)
...++|++..+++.+.. ..+.. ....++..+++.++|+.|+|++|++||. +++|+|+||+||+++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred cceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCC
Confidence 35678888887644322 11211 1233456678899999999999999997 578999999999998899999999
Q ss_pred eeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHh
Q 010480 148 HVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAH 226 (509)
Q Consensus 148 ~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~ 226 (509)
+|+|||.|+++.|+++|++||+++|+.|++...... ...+.|+| |+|++++|++|+||+++|+++||+.||+|
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~------~~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~ 173 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQY 173 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTT------CSCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGG
T ss_pred EEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcc------cccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999753321 12345788 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCc--cCHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEE
Q 010480 227 ASDPTEADRLRHLASP--AGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHV 304 (509)
Q Consensus 227 ~~~~~e~~~L~~l~~~--~~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~l 304 (509)
|+|+.||++|++|++. +|+++|.+|+.+++++++|||++||++++|+++|+++ +|+++||+|||||+|..+++.++|
T Consensus 174 a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~-lp~l~pR~YSIsSsp~~~~~~i~l 252 (458)
T 3qfs_A 174 ASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQARYYSIASSSKVHPNSVHI 252 (458)
T ss_dssp BCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEE
T ss_pred cCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhh-CCCCcceeEeeccCcccCCCEEEE
Confidence 9999999999999874 6889999999999999999999999999999999987 499999999999999877899999
Q ss_pred EEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHH
Q 010480 305 TCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 384 (509)
Q Consensus 305 tv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~ 384 (509)
+|++|.+.++.++.+.|.||+||+++.++|+......++|+++.|.|.+|.++.+|+||||+|||||||+||++++....
T Consensus 253 tV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~ 332 (458)
T 3qfs_A 253 CAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLR 332 (458)
T ss_dssp EEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHH
Confidence 99999888888889999999999999887642111248899999999999888899999999999999999999986544
Q ss_pred hhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecC
Q 010480 385 EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGD 464 (509)
Q Consensus 385 ~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp 464 (509)
..+...++++||||||+...|++|++||++|.+.+.+++++++|||+++.++|||++|.++.+.+++++.++++||||||
T Consensus 333 ~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp 412 (458)
T 3qfs_A 333 QQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGD 412 (458)
T ss_dssp HHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEE
T ss_pred hcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECC
Confidence 33333478999999999744999999999999998888899999999888999999999998899998888999999999
Q ss_pred CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 465 AKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 465 ~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++.|+++|.++|.+|+++++++++++|++|+++|+++|||++|||
T Consensus 413 ~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 413 ARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 558999999999999999999999999999999999999999999
|
| >1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-84 Score=715.43 Aligned_cols=485 Identities=32% Similarity=0.578 Sum_probs=403.2
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCCC-------CCCcccccc
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTVS-------TPYTAAISE 77 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~-------~~~~~~~~~ 77 (509)
+||+|| |.||++|++|||+|++++|+||+..|.|++|++|.+.+|++|++.++.+.+..... .......+.
T Consensus 150 ~F~~~~--k~ld~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (688)
T 1tll_A 150 HFCAFG--HAVDTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNK 227 (688)
T ss_dssp STTHHH--HHHHHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTT
T ss_pred HHHHHH--HHHHHHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcc
Confidence 699999 99999999999999999999999989999999999999999998875332110000 000011234
Q ss_pred eEEEEecCCCccccccccCCCCCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCC-CCccCCCCeeEEcccCC
Q 010480 78 YRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENL 156 (509)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~ 156 (509)
+++......... .. ....++.++|+.++|++|++|+.++++|+|+||+|+++++ +++|+|||+|+|+|.|+
T Consensus 228 ~~~~~~~~~~~~--~~------~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~ 299 (688)
T 1tll_A 228 FRLTYVAEAPDL--TQ------GLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNH 299 (688)
T ss_dssp EEEEECSCCCCH--HH------HHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCC
T ss_pred eEEecccccccc--cc------cccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCC
Confidence 444432211000 00 0012345678999999999999999999999999999764 79999999999999999
Q ss_pred HHHHHHHHHHhCC--CCCcEEEEecCCCCCCCCC---CCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHH
Q 010480 157 SETVEEALSLLGL--SPDTYFSLHTDKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPT 231 (509)
Q Consensus 157 ~~~V~~~l~~l~l--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~ 231 (509)
++.|+++|++||+ ++|+.|++....+...+.+ ....+.++||+|++++|++|+||+++|++.||+.||+||+|+.
T Consensus 300 ~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ 379 (688)
T 1tll_A 300 EDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEK 379 (688)
T ss_dssp HHHHHHHHTTCSSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHH
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEeccccccCCCcccccccccCCCCCccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHH
Confidence 9999999999986 6788998864321111111 0112346779999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEe
Q 010480 232 EADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYE 311 (509)
Q Consensus 232 e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~ 311 (509)
||++|++|++ +++.|.+|+...+++++|||.+||++++|+++++.. +|++.+|+|||||+|..+++.++|+|+++.+
T Consensus 380 ek~~L~~l~~--~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~~ 456 (688)
T 1tll_A 380 EKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSY 456 (688)
T ss_dssp HHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEEBCSCTTTSTTEEEEEEECCEE
T ss_pred HHHHHHHHhc--CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHh-CcccceeEEeecCCcccCCCeEEEEEEEEEE
Confidence 9999999996 788999999999999999999999999999999976 5999999999999998667899999998877
Q ss_pred eCCC--CccccCcCchhhhhcCCCccCCCCceeeEEEe-cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHh-hc
Q 010480 312 KTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AG 387 (509)
Q Consensus 312 ~~~~--~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~-~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~-~~ 387 (509)
.++. ++.+.|.||+||+++.+|+ .+.|.++ +|.|.+|.+..+|+||||+|||||||+||++++..... .+
T Consensus 457 ~~~~g~~~~~~G~~S~~L~~l~~Gd------~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~ 530 (688)
T 1tll_A 457 HTRDGEGPVHHGVCSSWLNRIQADD------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKG 530 (688)
T ss_dssp ETGGGTSCEEECHHHHHHTTCCTTS------EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSC
T ss_pred ecCCCCCCcCCCchhHHHHhCCCCC------EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhcc
Confidence 6654 3567899999999876654 4788885 56999998778999999999999999999999986522 12
Q ss_pred CCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCC-cccchhhHhhc-HHHHHHHH-hCCCEEEEecC
Q 010480 388 AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGD 464 (509)
Q Consensus 388 ~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~-~~yvq~~i~~~-~~~v~~~l-~~~~~iyvCGp 464 (509)
...++++||||||+++.|++|++||++|.+.+.+++++++|||++.. ++|||++|.++ .+.+++++ ..+++||||||
T Consensus 531 ~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp 610 (688)
T 1tll_A 531 MNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD 610 (688)
T ss_dssp CCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEE
T ss_pred CCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCC
Confidence 23478999999999976899999999999988888899999998754 89999999987 77778766 56899999999
Q ss_pred CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 465 AKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 465 ~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++|+++|.++|.+++.+++++++++|++|+++|+.++||+.|+|
T Consensus 611 -~~M~~~V~~~L~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 611 -VTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp -HHHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 78999999999999999999999999999999999999999998
|
| >2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-82 Score=676.44 Aligned_cols=407 Identities=34% Similarity=0.626 Sum_probs=352.0
Q ss_pred CCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCC--CcEEEE
Q 010480 100 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSL 177 (509)
Q Consensus 100 ~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~--~~~~~~ 177 (509)
...+++.++|+.|+|++|++||.++++|+|+||+||+++++++|+|||+|+|+|.|+++.|+++|++||+++ +..|++
T Consensus 105 ~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~ 184 (539)
T 2qtl_A 105 QVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLL 184 (539)
T ss_dssp --------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEE
T ss_pred ccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 345677889999999999999999999999999999998889999999999999999999999999999986 567777
Q ss_pred ecCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcC
Q 010480 178 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 256 (509)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~ 256 (509)
........ .+..++.++| ++|++++|++|+||+++|++.||+.||+||+|+.||++|.+|++++|+++|++|+.+.+
T Consensus 185 ~~~~~~~~--~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~ 262 (539)
T 2qtl_A 185 KIKADTKK--KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAC 262 (539)
T ss_dssp EECTTCCC--TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTT
T ss_pred eccccccC--CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcC
Confidence 65432211 1235677899 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeC--CCCccccCcCchhhhhcC---
Q 010480 257 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKT--PTGRVHKGLCSTWMKNSL--- 331 (509)
Q Consensus 257 ~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~--~~~~~~~G~~S~~L~~~~--- 331 (509)
++++|||.+||++++|+++|++. +|++++|+|||||+|..+++.++|+|+++.+.+ ..++.+.|+||+||+++.
T Consensus 263 ~~lldvL~~fps~~~p~~~ll~~-lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~ 341 (539)
T 2qtl_A 263 ACLLDLLLAFPSCQPPLSLLLEH-LPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASV 341 (539)
T ss_dssp CCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTT
T ss_pred CCHHHHHHhCCCcCCCHHHHHHh-CcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhh
Confidence 99999999999999999999976 599999999999999766799999999987743 345678899999999983
Q ss_pred --------CCccC-CCCceeeEEEec-CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc--CCCCCeEEEEec
Q 010480 332 --------PMEKS-NDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG--AELGPSLLFFGC 399 (509)
Q Consensus 332 --------~~~~~-~~~~~v~v~~~~-g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~--~~~~~~~L~~G~ 399 (509)
+|+.. ..+..++|+++. |.|.+|.+..+|+||||+|||||||+||++++....+.+ ...++++|||||
T Consensus 342 ~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~ 421 (539)
T 2qtl_A 342 LQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGC 421 (539)
T ss_dssp C--------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEE
T ss_pred ccccccCCCCCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEE
Confidence 33300 001157888886 599999877899999999999999999999987654332 134889999999
Q ss_pred cCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC------CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHH
Q 010480 400 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDV 472 (509)
Q Consensus 400 R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~------~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v 472 (509)
|+++.|++|++||++|.+.+.+++++++|||++. .++|||++|.++.+.+++++ ..+++||||||++.|+++|
T Consensus 422 R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V 501 (539)
T 2qtl_A 422 RHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDV 501 (539)
T ss_dssp SCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHH
Confidence 9994499999999999999988899999999876 78999999999988999988 5689999999944999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 473 HRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 473 ~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 502 ~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 502 HDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 9999999999999999999999999999999999999
|
| >4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-81 Score=643.58 Aligned_cols=382 Identities=34% Similarity=0.612 Sum_probs=336.4
Q ss_pred CCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCCCCC
Q 010480 108 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 187 (509)
Q Consensus 108 ~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~ 187 (509)
+++.|+|++|++||.++++|+|+||+|+++ ++++|+|||+|+|+|.|+++.|+++|++||+++++.+++.....
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~----- 78 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEE----- 78 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC--------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCC-----
Confidence 578899999999999999999999999997 58999999999999999999999999999999999887753211
Q ss_pred CCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhC
Q 010480 188 GKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEF 266 (509)
Q Consensus 188 ~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~f 266 (509)
.....|++ |+|++++|++ +||+++|+++||+.||+||+|+.+|++|++|++. +.|.+|+.++++|++|||++|
T Consensus 79 --~~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~f 152 (393)
T 4dql_A 79 --KLAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKY 152 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHC
T ss_pred --ccccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhC
Confidence 01123566 8999999999 9999999999999999999999999999999974 379999999999999999999
Q ss_pred CCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCc-cccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 267 PSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 267 ps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~-~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
|++++|+++|+++ +|+++||+|||||+|..+++.++|+|+++.+.+..++ .+.|.||+||+++.+|+ .+.++
T Consensus 153 ps~~~p~~~~l~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd------~v~v~ 225 (393)
T 4dql_A 153 PACEMKFSEFIAL-LPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGD------TITCF 225 (393)
T ss_dssp TTCCCCHHHHHHT-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCHHHHHHh-CCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcC------EEEEE
Confidence 9999999999986 5999999999999998777899999999877665543 46799999999976654 36655
Q ss_pred E--ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 346 V--RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 346 ~--~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
+ |.|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||++..|++|++||++|.+.+.+ +
T Consensus 226 v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~ 304 (393)
T 4dql_A 226 ISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-T 304 (393)
T ss_dssp EECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-E
T ss_pred EEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-E
Confidence 4 468999998888999999999999999999999866544444457899999999964499999999999988765 7
Q ss_pred EEEEEec-CCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 010480 424 LIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 502 (509)
Q Consensus 424 ~~~a~Sr-~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 502 (509)
++++||| ++..++|||+++.++.+.+++++.++++||||||++.|.++|.++|.+++.+++++++++|++|+++|+++|
T Consensus 305 l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 384 (393)
T 4dql_A 305 LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKG 384 (393)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 9999999 566799999999999889999888899999999977899999999999999999999999999999999999
Q ss_pred CeEEeeC
Q 010480 503 RYLRDVW 509 (509)
Q Consensus 503 Ry~~dvw 509 (509)
||++|||
T Consensus 385 Ry~~dv~ 391 (393)
T 4dql_A 385 RYAKDVW 391 (393)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 9999999
|
| >1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-78 Score=635.81 Aligned_cols=396 Identities=34% Similarity=0.639 Sum_probs=346.8
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCC-CCccCCCCeeEEcccCCHHHHHHHHHHhCC--CCCcEEEEecC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLGL--SPDTYFSLHTD 180 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l--~~~~~~~~~~~ 180 (509)
++.++|+.|+|++|++|+.++++|+|+||+|+++++ +++|+|||+|+|+|.|+++.|+++|++||+ ++|+.|++...
T Consensus 25 ~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~~ 104 (435)
T 1f20_A 25 VHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEML 104 (435)
T ss_dssp HHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEE
T ss_pred cccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEecc
Confidence 556889999999999999999999999999999765 799999999999999999999999999976 67899988642
Q ss_pred CCCCCCCC---CCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCC
Q 010480 181 KEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQR 257 (509)
Q Consensus 181 ~~~~~~~~---~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~ 257 (509)
.+...+.+ ....+.++||+|++++|++|+||+++|++.||+.||+||+|+.||++|++|++ ++++|.+|+...++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~p~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~ 182 (435)
T 1f20_A 105 EERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNP 182 (435)
T ss_dssp EEESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCC
T ss_pred ccccCCCCccccccccCCCCCccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccCC
Confidence 11111111 01124567799999999999999999999999999999999999999999996 77899999999999
Q ss_pred CHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCC--ccccCcCchhhhhcCCCcc
Q 010480 258 SLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTG--RVHKGLCSTWMKNSLPMEK 335 (509)
Q Consensus 258 ~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~--~~~~G~~S~~L~~~~~~~~ 335 (509)
+++|||.+||++++|+++++.. +|++++|+|||||+|..+++.++|+|+++.+.++.+ +.+.|.||+||+++.+|+
T Consensus 183 ~i~~vl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd- 260 (435)
T 1f20_A 183 TMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD- 260 (435)
T ss_dssp CHHHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC-
T ss_pred CHHHHHHhCCcCCCCHHHHHHh-CCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCC-
Confidence 9999999999999999999986 599999999999999866789999999887766543 567899999999876654
Q ss_pred CCCCceeeEEEe-cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHh-hcCCCCCeEEEEeccCCCCccccHHHHH
Q 010480 336 SNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELN 413 (509)
Q Consensus 336 ~~~~~~v~v~~~-~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~-~~~~~~~~~L~~G~R~~~~d~ly~~el~ 413 (509)
.+.|.++ +|.|.+|.+..+|+||||+|||||||+||++++..... .+...++++||||||+++.|++|++||+
T Consensus 261 -----~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~ 335 (435)
T 1f20_A 261 -----VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETL 335 (435)
T ss_dssp -----EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHH
T ss_pred -----EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHH
Confidence 4788885 57999998778999999999999999999999986421 1223478999999999976899999999
Q ss_pred HHHHcCCcCeEEEEEecCCCC-cccchhhHhhc-HHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHH
Q 010480 414 NFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 490 (509)
Q Consensus 414 ~~~~~~~~~~~~~a~Sr~~~~-~~yvq~~i~~~-~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~ 490 (509)
+|.+.+.+++++++|||++.. ++|||++|.++ .+.+++++ ..+++|||||| +.|+++|.++|.+++.+++++++++
T Consensus 336 ~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~~~~ 414 (435)
T 1f20_A 336 QAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEED 414 (435)
T ss_dssp HHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999988887899999998654 89999999887 67777766 56899999999 7899999999999999999999999
Q ss_pred HHHHHHHHHHCCCeEEeeC
Q 010480 491 AESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 491 a~~~~~~l~~~~Ry~~dvw 509 (509)
|++|+++|+++|||++|||
T Consensus 415 a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 415 AGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEec
Confidence 9999999999999999999
|
| >1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-77 Score=610.66 Aligned_cols=367 Identities=31% Similarity=0.571 Sum_probs=332.6
Q ss_pred cccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCC
Q 010480 103 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 182 (509)
Q Consensus 103 ~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 182 (509)
.++.++|+.|+|++|++||.++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++.
T Consensus 5 ~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~---- 80 (374)
T 1ddg_A 5 PYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE---- 80 (374)
T ss_dssp CCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET----
T ss_pred CCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC----
Confidence 4567889999999999999999999999999999888999999999999999999999999999999999998874
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 010480 183 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262 (509)
Q Consensus 183 ~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dv 262 (509)
+ .++|++++|++|+||+ +|++.||+.||+||+|++ |.+|++ +++.|.+|+. +++++||
T Consensus 81 -~------------~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~v 138 (374)
T 1ddg_A 81 -G------------KTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDM 138 (374)
T ss_dssp -T------------EEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHH
T ss_pred -C------------CCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHH
Confidence 1 1789999999999999 899999999999999974 888884 6788999987 4899999
Q ss_pred HhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCce
Q 010480 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSW 341 (509)
Q Consensus 263 l~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~ 341 (509)
|.+||+ ++++|||+++. +++.+|+|||||+|..+++.++|+|+++.+.++ ++.+.|.||+||++ +.+|+ .
T Consensus 139 l~~~p~-~~~~Gq~v~l~-~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd------~ 209 (374)
T 1ddg_A 139 VRFSPA-QLDAEALINLL-RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEG------E 209 (374)
T ss_dssp HHHSCC-CCCHHHHHHHS-CBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSC------E
T ss_pred HHHCCC-CCCHHHHHhhc-cCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCC------E
Confidence 999999 99999999864 889999999999998657899999999877665 66778999999998 65543 4
Q ss_pred eeEEEe-cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC
Q 010480 342 APIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 420 (509)
Q Consensus 342 v~v~~~-~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~ 420 (509)
+.|.++ +|.|.+|.+..+|+||||+|||||||+||++++...+. .++++||||||+++.|++|++||++|.+.+.
T Consensus 210 v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~ 285 (374)
T 1ddg_A 210 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV 285 (374)
T ss_dssp EEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTS
T ss_pred EEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCC
Confidence 788885 56999998778999999999999999999999986532 3789999999998339999999999999888
Q ss_pred cCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEec-CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010480 421 LSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG-DAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 499 (509)
Q Consensus 421 ~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCG-p~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 499 (509)
+++++++|||+++.++|||++|.++.+.+++++.++++||||| | ++|+++|.++|.+++.+++++++++|++|+++|+
T Consensus 286 ~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p-~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 364 (374)
T 1ddg_A 286 LTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDA-NRMAKDVEQALLEVIAEFGGMDTEAADEFLSELR 364 (374)
T ss_dssp CCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECT-TTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999988899999999998888888887789999999 7 8999999999999999999999999999999999
Q ss_pred HCCCeEEeeC
Q 010480 500 MTGRYLRDVW 509 (509)
Q Consensus 500 ~~~Ry~~dvw 509 (509)
++|||++|||
T Consensus 365 ~~~Ry~~dv~ 374 (374)
T 1ddg_A 365 VERRYQRDVY 374 (374)
T ss_dssp HTTCEEEEEC
T ss_pred HCCCeEEecC
Confidence 9999999999
|
| >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=320.66 Aligned_cols=271 Identities=24% Similarity=0.449 Sum_probs=218.3
Q ss_pred cCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCC
Q 010480 105 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDG 184 (509)
Q Consensus 105 ~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~ 184 (509)
+...++.++|+.+++++..++.+++++|+|+.++ .+.|+||+++.|.++|.. .
T Consensus 33 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------~-- 85 (314)
T 1fnb_A 33 KPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGED------------------------K-- 85 (314)
T ss_dssp BTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC------------------------T--
T ss_pred CCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCC-CCCcCCCCEEEEecCCCC------------------------c--
Confidence 3456788999999999988888899999999875 488999999999876421 0
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHh
Q 010480 185 TPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 264 (509)
Q Consensus 185 ~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~ 264 (509)
.|
T Consensus 86 ----------------------------------------------------------~g-------------------- 87 (314)
T 1fnb_A 86 ----------------------------------------------------------NG-------------------- 87 (314)
T ss_dssp ----------------------------------------------------------TS--------------------
T ss_pred ----------------------------------------------------------CC--------------------
Confidence 00
Q ss_pred hCCCCCCChhhhHHhhcCCCCCccccccCCCCC---CCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCce
Q 010480 265 EFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 341 (509)
Q Consensus 265 ~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 341 (509)
.+..+|+|||+|+|.. .++.++|+|+.+.+.++.++.+.|.+|+||+++.+|+ .
T Consensus 88 -----------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd------~ 144 (314)
T 1fnb_A 88 -----------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGA------E 144 (314)
T ss_dssp -----------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTC------E
T ss_pred -----------------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCC------E
Confidence 0136899999999863 2578999998876665556667899999999976654 4
Q ss_pred eeEEEecCCCC-CCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHHHHcC
Q 010480 342 APIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 419 (509)
Q Consensus 342 v~v~~~~g~F~-lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~ 419 (509)
+.|.+|.|.|. ++.+..+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|.+||+++.+.+
T Consensus 145 v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~~~ 223 (314)
T 1fnb_A 145 VKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKA 223 (314)
T ss_dssp EEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHHHC
T ss_pred EEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHHhC
Confidence 78888888764 55545689999999999999999999987532111 0126799999999997 999999999998876
Q ss_pred C-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHH
Q 010480 420 A-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAES 493 (509)
Q Consensus 420 ~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~ 493 (509)
. .+++++++||++. .++||+++|.+....+++.+. .++.||+||| ++|+++|.++|.+++.+.+ . +|++
T Consensus 224 ~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~~~~ 298 (314)
T 1fnb_A 224 PDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---DWIE 298 (314)
T ss_dssp TTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---CHHH
T ss_pred CCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHHhC-c---hHHH
Confidence 4 5689999998643 578999999887666666553 5789999999 8999999999999998765 3 5789
Q ss_pred HHHHHHHCCCeEEeeC
Q 010480 494 MVKNLQMTGRYLRDVW 509 (509)
Q Consensus 494 ~~~~l~~~~Ry~~dvw 509 (509)
|+++|+++|||++|||
T Consensus 299 ~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 299 YKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHHHHTTCEEEEEC
T ss_pred HHHHHHHCCcEEEecC
Confidence 9999999999999999
|
| >2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=316.29 Aligned_cols=272 Identities=25% Similarity=0.442 Sum_probs=217.7
Q ss_pred cCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCC
Q 010480 105 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDG 184 (509)
Q Consensus 105 ~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~ 184 (509)
+...++.++|+++++|+..++.+++++++|++++..+.|+||+++.|.++|... .
T Consensus 17 ~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~------------------------~- 71 (304)
T 2bmw_A 17 RPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK------------------------N- 71 (304)
T ss_dssp BTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCT------------------------T-
T ss_pred CCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCcc------------------------c-
Confidence 345678899999999998889999999999987656899999999998876310 0
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHh
Q 010480 185 TPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 264 (509)
Q Consensus 185 ~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~ 264 (509)
|
T Consensus 72 -----------------------------------------------------------g-------------------- 72 (304)
T 2bmw_A 72 -----------------------------------------------------------G-------------------- 72 (304)
T ss_dssp -----------------------------------------------------------S--------------------
T ss_pred -----------------------------------------------------------C--------------------
Confidence 0
Q ss_pred hCCCCCCChhhhHHhhcCCCCCccccccCCCCC---CCCeEEEEEEEEEeeCCC-CccccCcCchhhhhcCCCccCCCCc
Q 010480 265 EFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPT-GRVHKGLCSTWMKNSLPMEKSNDCS 340 (509)
Q Consensus 265 ~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~-~~~~~G~~S~~L~~~~~~~~~~~~~ 340 (509)
.+..+|+|||+|+|.. .++.++|+|+.+.+.++. +..+.|.+|+||+++.+|+
T Consensus 73 -----------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd------ 129 (304)
T 2bmw_A 73 -----------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGS------ 129 (304)
T ss_dssp -----------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTC------
T ss_pred -----------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCC------
Confidence 0136899999999852 357899999876555432 3345799999999976654
Q ss_pred eeeEEEecCCC-CCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhh--c---CCCCCeEEEEeccCCCCccccHHHHHH
Q 010480 341 WAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--G---AELGPSLLFFGCRNRKMDYIYEDELNN 414 (509)
Q Consensus 341 ~v~v~~~~g~F-~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~--~---~~~~~~~L~~G~R~~~~d~ly~~el~~ 414 (509)
.+.|.+|.|.| .++.+..+|+||||+|||||||+||+++++..... + ...++++||||||+.+ |++|.+||++
T Consensus 130 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el~~ 208 (304)
T 2bmw_A 130 EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEELEE 208 (304)
T ss_dssp EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHHHH
T ss_pred EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHHHHH
Confidence 47888888875 45655578999999999999999999998754311 0 0136899999999987 9999999999
Q ss_pred HHHcCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCH
Q 010480 415 FVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDS 488 (509)
Q Consensus 415 ~~~~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~ 488 (509)
+.+.+. .++++.++||++. .++|||+++.+..+.+++++ ..++.||+||| ++|+++|+++|.+++.+.+ .+
T Consensus 209 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~~g-~~- 285 (304)
T 2bmw_A 209 IQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEG-VT- 285 (304)
T ss_dssp HHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-CC-
T ss_pred HHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-cc-
Confidence 988754 5689999999742 57899999988777777665 34689999999 8999999999999998754 43
Q ss_pred HHHHHHHHHHHHCCCeEEeeC
Q 010480 489 SKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 489 ~~a~~~~~~l~~~~Ry~~dvw 509 (509)
+++++++|+++|||++|||
T Consensus 286 --~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 286 --WSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp --HHHHHHHHHHTTCEEEEEC
T ss_pred --HHHHHHHHHHcCCeEEecC
Confidence 6789999999999999999
|
| >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=317.79 Aligned_cols=272 Identities=25% Similarity=0.422 Sum_probs=218.7
Q ss_pred cCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCCC
Q 010480 105 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDG 184 (509)
Q Consensus 105 ~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~ 184 (509)
....++.++|+++++++.+++.+++++|+|+.++..+.|+||+++.|.+++..
T Consensus 118 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~--------------------------- 170 (402)
T 2b5o_A 118 RPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED--------------------------- 170 (402)
T ss_dssp CSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE---------------------------
T ss_pred cCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC---------------------------
Confidence 44567899999999999888889999999998754589999999998766411
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHh
Q 010480 185 TPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMS 264 (509)
Q Consensus 185 ~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~ 264 (509)
. .|
T Consensus 171 --------------------------~-------------------------------~g-------------------- 173 (402)
T 2b5o_A 171 --------------------------K-------------------------------NG-------------------- 173 (402)
T ss_dssp --------------------------T-------------------------------TT--------------------
T ss_pred --------------------------c-------------------------------CC--------------------
Confidence 0 00
Q ss_pred hCCCCCCChhhhHHhhcCCCCCccccccCCCCC---CCCeEEEEEEEEEeeCCC-CccccCcCchhhhhcCCC-ccCCCC
Q 010480 265 EFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPT-GRVHKGLCSTWMKNSLPM-EKSNDC 339 (509)
Q Consensus 265 ~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~-~~~~~G~~S~~L~~~~~~-~~~~~~ 339 (509)
.+..+|+|||+|+|.. +++.++|+|+.+.+.++. ++.+.|.+|+||+++.+| +.
T Consensus 174 -----------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~---- 232 (402)
T 2b5o_A 174 -----------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDD---- 232 (402)
T ss_dssp -----------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCC----
T ss_pred -----------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCce----
Confidence 0136899999999863 257899999876554432 344679999999997665 43
Q ss_pred ceeeEEEecCCC-CCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 010480 340 SWAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQ 417 (509)
Q Consensus 340 ~~v~v~~~~g~F-~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~~~ 417 (509)
+.|..|.|.| .++.+..+|+||||+|||||||++|+++++.....+ ...++++||||||+.+ |++|.+||+++.+
T Consensus 233 --v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l~~ 309 (402)
T 2b5o_A 233 --VKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKMAA 309 (402)
T ss_dssp --EEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHHHH
T ss_pred --EEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHHHH
Confidence 6788888876 466556789999999999999999999987532110 0136899999999997 9999999999988
Q ss_pred cCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHH
Q 010480 418 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 491 (509)
Q Consensus 418 ~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a 491 (509)
.+. .+++++++||++. .++||+++|.+..+.+++++ ..+++||+||| ++|+++|.++|.+++.+.+. .+
T Consensus 310 ~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~~g~----~~ 384 (402)
T 2b5o_A 310 ENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRGL----NW 384 (402)
T ss_dssp HCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHHTTC----CH
T ss_pred hCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHHcCc----hH
Confidence 765 6689999999742 57899999998777777766 35789999999 89999999999999988764 57
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 010480 492 ESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 492 ~~~~~~l~~~~Ry~~dvw 509 (509)
.+++++|+++|||++|||
T Consensus 385 ~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 385 EEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCCEEEecC
Confidence 889999999999999999
|
| >3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-37 Score=308.30 Aligned_cols=227 Identities=26% Similarity=0.442 Sum_probs=187.4
Q ss_pred CChhhhHHhhcCCC-------CCccccccCCCCC---CCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCc
Q 010480 271 PPLGVFFAAIVPRL-------QPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCS 340 (509)
Q Consensus 271 ~~~~~~l~~~~p~~-------~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 340 (509)
..+||++.+.+|.. .+|+|||+|+|.. +++.++|+|+.+.+.++.++.+.|.+|+||+++.+|+
T Consensus 66 ~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------ 139 (310)
T 3vo2_A 66 YREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA------ 139 (310)
T ss_dssp CCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTC------
T ss_pred ccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCC------
Confidence 45799987655542 5899999999963 3578999999876666667777899999999976654
Q ss_pred eeeEEEecCCCC-CCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHHHHc
Q 010480 341 WAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQS 418 (509)
Q Consensus 341 ~v~v~~~~g~F~-lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~ 418 (509)
.+.|.+|.|.|. +|.+..+|+||||+|||||||++|+++++...... ...++++||||||+.+ |++|.+||+++.+.
T Consensus 140 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~ 218 (310)
T 3vo2_A 140 DVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKEM 218 (310)
T ss_dssp EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHHH
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHHh
Confidence 377888888765 55556789999999999999999999987532111 1126799999999997 99999999999988
Q ss_pred CC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHh-CCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHH
Q 010480 419 GA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAE 492 (509)
Q Consensus 419 ~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~-~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~ 492 (509)
+. .+++++++||++. .++|||+++.+..+.+++.+. .++.||+||| ++|+++|+++|.+++.+.+ . +++
T Consensus 219 ~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~~~ 293 (310)
T 3vo2_A 219 APDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---DWM 293 (310)
T ss_dssp CTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---CHH
T ss_pred CCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---CHH
Confidence 64 6689999999753 578999999988777887763 5899999999 8999999999999998865 3 588
Q ss_pred HHHHHHHHCCCeEEeeC
Q 010480 493 SMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 493 ~~~~~l~~~~Ry~~dvw 509 (509)
+|+++|+++|||++|||
T Consensus 294 ~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 294 QYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHCCceEEecC
Confidence 99999999999999999
|
| >2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=299.56 Aligned_cols=276 Identities=21% Similarity=0.326 Sum_probs=209.9
Q ss_pred CCCCeeEEEeeeeccCCCCCCCc---------EEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEE
Q 010480 106 AQHPCRSNVAVRKELHTPSSDRS---------CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFS 176 (509)
Q Consensus 106 ~~~~~~a~v~~~~~L~~~~~~~~---------~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~ 176 (509)
...++.++|+.+++|+..++.++ +++|+|+.++..+.|+||+++.|.++|....
T Consensus 18 ~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~----------------- 80 (314)
T 2rc5_A 18 KSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE----------------- 80 (314)
T ss_dssp TTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH-----------------
T ss_pred CCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc-----------------
Confidence 34678899999999998767666 9999999875558999999999988764210
Q ss_pred EecCCCCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcC
Q 010480 177 LHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 256 (509)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~ 256 (509)
+. +. .+
T Consensus 81 -------g~------------~~--------------------------------------~~----------------- 86 (314)
T 2rc5_A 81 -------KK------------AK--------------------------------------GL----------------- 86 (314)
T ss_dssp -------HH------------HT--------------------------------------TC-----------------
T ss_pred -------cC------------cc--------------------------------------ch-----------------
Confidence 00 00 00
Q ss_pred CCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCC---CCCeEEEEEEEEEeeCCCCcc-ccCcCchhhhhcCC
Q 010480 257 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRV---APSRIHVTCALVYEKTPTGRV-HKGLCSTWMKNSLP 332 (509)
Q Consensus 257 ~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~~~~-~~G~~S~~L~~~~~ 332 (509)
.+| ++.+|+|||+|+|.. +++.++|+|+++.+.++.|+. +.|.+|+||+++.+
T Consensus 87 -------~~~----------------~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~ 143 (314)
T 2rc5_A 87 -------ADV----------------GYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKP 143 (314)
T ss_dssp -------SCC----------------BCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCT
T ss_pred -------hhc----------------CCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCC
Confidence 011 157899999999852 357899999876444333332 46999999999666
Q ss_pred CccCCCCceeeEEEecCCCC-CCC-CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHH
Q 010480 333 MEKSNDCSWAPIFVRQSNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYED 410 (509)
Q Consensus 333 ~~~~~~~~~v~v~~~~g~F~-lp~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~ 410 (509)
|+ .+.|..|.|.|. ++. +..+|+||||+|||||||++|++++..... ....++++||||+|+.+ |++|.+
T Consensus 144 Gd------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~-~~~~~~v~l~~g~r~~~-d~~~~~ 215 (314)
T 2rc5_A 144 GD------EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKL-IKFTGNITLVYGAPYSD-ELVMMD 215 (314)
T ss_dssp TC------EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCS-SCBCSCEEEEEEESSGG-GSCSHH
T ss_pred cC------EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhcc-cCCCCcEEEEEEeCCHH-HHhHHH
Confidence 54 477888888865 444 357899999999999999999999875321 01136899999999998 999999
Q ss_pred HHHHHHHcCCcCeEEEEEecCC-----CCcccchhhHhhcHHHHHHHHhCCCEEEEe-cCCcchHHHHHHHHHHHHHHcC
Q 010480 411 ELNNFVQSGALSQLIVAFSREG-----PTKEYVQHKMMEKSSDIWNMLSEGAYLYVC-GDAKSMARDVHRTLHTIVQEQG 484 (509)
Q Consensus 411 el~~~~~~~~~~~~~~a~Sr~~-----~~~~yvq~~i~~~~~~v~~~l~~~~~iyvC-Gp~~~M~~~v~~~L~~i~~~~~ 484 (509)
||+++.+.+..+++++++||++ +.++||++++.+..+.+.+.+.....+|+| || ++|+++|++.|.+++. .
T Consensus 216 el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~yvCGGp-~~m~~~v~~~L~~~g~--~ 292 (314)
T 2rc5_A 216 YLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRFYICGGP-KGMEKGVIEEIQKISG--N 292 (314)
T ss_dssp HHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEEEEEESS-TTTHHHHHHHHHHHHT--C
T ss_pred HHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeEEEeCCc-HHHHHHHHHHHHHHHh--c
Confidence 9999987644668999999873 246899999988766666655223345999 99 8999999999999876 2
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 485 SLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 485 ~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++ .++.|+..|+++|||++|||
T Consensus 293 ~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 293 TG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp CS---CHHHHHHHHHHTTCEEEEEC
T ss_pred cc---hHHHHHHHHHHCCCEEEecC
Confidence 33 46789999999999999999
|
| >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-36 Score=299.41 Aligned_cols=228 Identities=27% Similarity=0.425 Sum_probs=181.9
Q ss_pred CCChhhhHHhhcCCC---------CCccccccCCCCC---CCCeEEEEEEEEEeeCCC----CccccCcCchhhhhcCCC
Q 010480 270 KPPLGVFFAAIVPRL---------QPRYYSISSSPRV---APSRIHVTCALVYEKTPT----GRVHKGLCSTWMKNSLPM 333 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~---------~pR~YSIaSsp~~---~~~~l~ltv~~v~~~~~~----~~~~~G~~S~~L~~~~~~ 333 (509)
...+|||+.+.+|.. .+|+|||+|+|.. +++.++|+|+.+.+..+. ++.+.|.+|+||+++.+|
T Consensus 60 ~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G 139 (311)
T 3lo8_A 60 PYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG 139 (311)
T ss_dssp CCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTT
T ss_pred cccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCc
Confidence 456899987766652 6899999999964 247899999875332222 123679999999997665
Q ss_pred ccCCCCceeeEEEecCCCCCCC--CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCC-CCCeEEEEeccCCCCccccHH
Q 010480 334 EKSNDCSWAPIFVRQSNFKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE-LGPSLLFFGCRNRKMDYIYED 410 (509)
Q Consensus 334 ~~~~~~~~v~v~~~~g~F~lp~--~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~-~~~~~L~~G~R~~~~d~ly~~ 410 (509)
+ .+.|.+|.|.|.+.+ +..+|+||||||||||||++|+++++.....+.. .++++||||+|+.+ |++|.+
T Consensus 140 d------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~ 212 (311)
T 3lo8_A 140 D------KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDE 212 (311)
T ss_dssp C------EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHH
T ss_pred C------EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHH
Confidence 4 478888888876543 3578999999999999999999998754311111 25799999999997 999999
Q ss_pred HHHHHHHcCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCC
Q 010480 411 ELNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 485 (509)
Q Consensus 411 el~~~~~~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~ 485 (509)
||+++.+.+. .++++.++||++. .++||++.+.+..+.+++++..++.||+||| ++|+++|+++|.+++.+.+
T Consensus 213 el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g- 290 (311)
T 3lo8_A 213 EFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG- 290 (311)
T ss_dssp HHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHhcc-
Confidence 9999998764 6689999999753 4789999999877777776667899999999 8999999999999998765
Q ss_pred CCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 486 LDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 486 ~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++|++|+++|+++|||++|||
T Consensus 291 ---~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 291 ---ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp ---CCHHHHHHHHHHTTCEEEEEC
T ss_pred ---HHHHHHHHHHHHCCcEEEecC
Confidence 368899999999999999999
|
| >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=285.67 Aligned_cols=290 Identities=22% Similarity=0.349 Sum_probs=204.8
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 183 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 183 (509)
|..++|+.++|+.+.+|+.++...+|+||+|+.+ ..+.|.+|..++|.|+..+.. ...+
T Consensus 10 ~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~~~-----~~~~--------------- 68 (316)
T 3jqq_A 10 YTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNELD-----NNPN--------------- 68 (316)
T ss_dssp SCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC---------------------------
T ss_pred ecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCcccc-----cccc---------------
Confidence 4567899999999999999888889999999986 469999999999999876532 0000
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 010480 184 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 263 (509)
Q Consensus 184 ~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl 263 (509)
+ +.+. | . .++-++.- + .+..++
T Consensus 69 -~-----~~~~--~----~----~~~~~~~~------------~---------------------------~h~~~~--- 90 (316)
T 3jqq_A 69 -N-----QINK--D----H----NIINTTNH------------T---------------------------NHNNIA--- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -c-----cccc--c----c----cccccccc------------c---------------------------cccccc---
Confidence 0 0000 0 0 00100000 0 000000
Q ss_pred hhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCC---CCccccCcCchhhhhcCCCccCCCCc
Q 010480 264 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTP---TGRVHKGLCSTWMKNSLPMEKSNDCS 340 (509)
Q Consensus 264 ~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~---~~~~~~G~~S~~L~~~~~~~~~~~~~ 340 (509)
. . .+-+...+|+|||||+|.. +.++|+|+++.|..+ .++.+.|.+|+||+++.+|+
T Consensus 91 ------~------~-~~~g~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd------ 149 (316)
T 3jqq_A 91 ------L------S-HIKKQRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIND------ 149 (316)
T ss_dssp -------------------CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTTC------
T ss_pred ------c------c-cCCCcccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCC------
Confidence 0 0 1124568999999999973 689999987644322 23456799999998877654
Q ss_pred eeeEEEecCCCCCCCC---CCCCEEEEccCCccchhHHHHHHHHHHHhh------cCCCCCeEEEEeccCCCCccccHHH
Q 010480 341 WAPIFVRQSNFKLPAD---AKVPIIMIGPGTGLAPFRGFLQERFALQEA------GAELGPSLLFFGCRNRKMDYIYEDE 411 (509)
Q Consensus 341 ~v~v~~~~g~F~lp~~---~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~------~~~~~~~~L~~G~R~~~~d~ly~~e 411 (509)
.+.|.+|.|.|.++.+ ..+|+||||||||||||+||++++...... +...++++||||+|+.+ |++|.+|
T Consensus 150 ~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~e 228 (316)
T 3jqq_A 150 DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLNE 228 (316)
T ss_dssp EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHHH
T ss_pred EEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHHH
Confidence 3788889999999875 378999999999999999999998754211 01237899999999998 9999999
Q ss_pred HHHHHHcCC-cCeEEEEEecCC---CCcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCC
Q 010480 412 LNNFVQSGA-LSQLIVAFSREG---PTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 486 (509)
Q Consensus 412 l~~~~~~~~-~~~~~~a~Sr~~---~~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~ 486 (509)
|+++.+... .+++++++||++ +.++||++.+.+....+++++ ..++.||+||| ++|++++.++|.+.+ ++
T Consensus 229 L~~l~~~~~~~~~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~G----~~ 303 (316)
T 3jqq_A 229 LEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSHD----QF 303 (316)
T ss_dssp HHHHHHHCTTTEEEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC--------
T ss_pred HHHHHHhCCCcEEEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHcC----CC
Confidence 999988754 568999999974 367999999998877777766 46899999999 899999998887654 22
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 010480 487 DSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 487 ~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++ ...+|++.|+|
T Consensus 304 ~~----------v~~~rih~E~f 316 (316)
T 3jqq_A 304 DE----------KKKKRVHVEVY 316 (316)
T ss_dssp CH----------HHHTTEEEEEC
T ss_pred cc----------cccccEEEEeC
Confidence 22 24578998886
|
| >1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-27 Score=226.70 Aligned_cols=185 Identities=17% Similarity=0.259 Sum_probs=147.2
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~~~ 347 (509)
...+||++.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|..|
T Consensus 43 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~~---------~~G~~s~~l~~~l~~Gd------~v~v~gP 106 (250)
T 1tvc_A 43 KFEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRVL---------PEGRFSDYLRNDARVGQ------VLSVKGP 106 (250)
T ss_dssp SCCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECCC---------TTSSSHHHHHHHSSSSS------EEEEEEE
T ss_pred CcCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEEC---------CCCCchHHHHhcCCCCC------EEEEEcC
Confidence 34689999766665 57899999999863 57899888643 3599999997 666554 4788889
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+..+++||||+|||||||++|++++...+ ...+++|+||+|+.+ |++|.+||+++.+.+..++++.+
T Consensus 107 ~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 181 (250)
T 1tvc_A 107 LGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT----APNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKAC 181 (250)
T ss_dssp ECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT----CCSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEEC
T ss_pred ccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC----CCceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 9999988665689999999999999999999987642 236899999999998 99999999999876666788888
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|+++. .++||++.+.+. +.+. ..+..||+||| ++|+++|++.|.+.+
T Consensus 182 ~s~~~~~~~g~~g~v~~~l~~~---~~~~-~~~~~vyvCGp-~~m~~~v~~~l~~~G 233 (250)
T 1tvc_A 182 VWHPSGDWEGEQGSPIDALRED---LESS-DANPDIYLCGP-PGMIDAACELVRSRG 233 (250)
T ss_dssp CSSCSSCCSSSSSSSSHHHHHH---HHHS-SSSSEEEEESS-HHHHHHHHHHHHHHC
T ss_pred eccCCCCcCCccceehHHHHhh---hhcc-cCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 997532 567888877642 2221 25789999999 899999999987653
|
| >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=222.21 Aligned_cols=183 Identities=16% Similarity=0.194 Sum_probs=141.0
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchh-hhhcCCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTW-MKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~-L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
...+||++.+.+|...+|+|||+|+|.. ++.++|+|+++ ..|.+|++ +.++.+|+ .+.|..|.
T Consensus 29 ~~~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~~~~~l~~Gd------~v~v~gP~ 92 (232)
T 1qfj_A 29 SFRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGAS---------EINLYAKAVMDRILKDH------QIVVDIPH 92 (232)
T ss_dssp CCCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHHS------EEEEEEEE
T ss_pred CcCCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEEc---------cCCchhHHHHHhCCCCC------EEEEeCCc
Confidence 4568999987677778999999999973 57899988754 23667776 45555543 37888899
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
|.|.++.+..+++||||+|||||||++|++++...+ ...+++|+||+|+.+ |++|.+||+++++.+..++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T 1qfj_A 93 GEAWLRDDEERPMILIAGGTGFSYARSILLTALARN----PNRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVV 167 (232)
T ss_dssp CSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC----TTCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred cceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC----CCCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEE
Confidence 999987665789999999999999999999987642 237899999999998 999999999998876667888899
Q ss_pred ecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHH-HHH
Q 010480 429 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTI 479 (509)
Q Consensus 429 Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L-~~i 479 (509)
|+++. .++|+++.+.+.. .+ ..+..+|+||| ++|++++++.| .+.
T Consensus 168 s~~~~~~~g~~g~v~~~~~~~~---~~--~~~~~vyvCGp-~~m~~~v~~~l~~~~ 217 (232)
T 1qfj_A 168 EQPEAGWRGRTGTVLTAVLQDH---GT--LAEHDIYIAGR-FEMAKIARDLFCSER 217 (232)
T ss_dssp SSCCTTCCSEESCHHHHHHHHC---SC--CTTCEEEEESC-HHHHHHHHHHHHHHS
T ss_pred cCCCCCcCCceeeHHHHHHHhc---CC--ccccEEEEECC-HHHHHHHHHHHHHHc
Confidence 98643 3577877665421 01 24689999999 89999999988 553
|
| >2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=228.80 Aligned_cols=182 Identities=18% Similarity=0.333 Sum_probs=137.5
Q ss_pred CCCccccccCCCCCCCCeEEEEEEEEEee--CC-C---CccccCcCchhhhhcCCCccCCCCceeeEEEecCCCCCCCCC
Q 010480 284 LQPRYYSISSSPRVAPSRIHVTCALVYEK--TP-T---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADA 357 (509)
Q Consensus 284 ~~pR~YSIaSsp~~~~~~l~ltv~~v~~~--~~-~---~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g~F~lp~~~ 357 (509)
..+|+|||+|+|.. .+.++|+|+++... +. . .+.+.|.+|+||+++.+|+ .+.|..|.|.|.++. .
T Consensus 84 ~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd------~v~v~gP~G~f~~~~-~ 155 (290)
T 2r6h_A 84 ETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGD------KVMMSGPYGDFHIQD-T 155 (290)
T ss_dssp CEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTC------EEEEEEEECCCCCCS-S
T ss_pred CcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCC------EEEEEecccCCcCCC-C
Confidence 45799999999974 57899988753110 00 0 1134699999999976654 478888999999863 4
Q ss_pred CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC----
Q 010480 358 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP---- 433 (509)
Q Consensus 358 ~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~---- 433 (509)
.+++||||+|||||||++|+++++.... ...+++||||+|+.+ |++|.+||+++.+.+..++++.++||+..
T Consensus 156 ~~~~vliagGtGitP~~s~l~~~~~~~~---~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~ 231 (290)
T 2r6h_A 156 DAEMLYIGGGAGMAPLRAQILHLFRTLK---TGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNW 231 (290)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHHHHTSC---CCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCC
T ss_pred CCeEEEEECccCHHHHHHHHHHHHHhcC---CCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccCC
Confidence 6899999999999999999999876421 236899999999997 99999999999887666789999998632
Q ss_pred --CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 434 --TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 434 --~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.++||++.+.+. .+.+.. ..++.||+||| ++|+++|++.|.+.+
T Consensus 232 ~g~~g~v~~~~~~~--~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 278 (290)
T 2r6h_A 232 TGYVGFIHQVIYDN--YLKDHDAPEDIEYYMCGP-GPMANAVKGMLENLG 278 (290)
T ss_dssp CSCBSCHHHHHHHH--TTTTCSCGGGEEEEEECC-HHHHHHHHHHHHHHT
T ss_pred CCeeEecCHHHHHh--HHhhccCcCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 367888766432 011111 13578999999 899999999988754
|
| >2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-26 Score=224.76 Aligned_cols=186 Identities=17% Similarity=0.240 Sum_probs=143.0
Q ss_pred CChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+||++.+.+|. ...|+|||+|.|. ..+.++|+|+.+ ..|.+|+||+++.+|+ .+.|..|
T Consensus 42 ~~pGq~v~l~~~~~g~~~~R~ysi~s~~~-~~~~~~l~vk~~---------~~G~~S~~l~~l~~Gd------~v~v~gP 105 (243)
T 2eix_A 42 LPIGQHMSVKATVDGKEIYRPYTPVSSDD-EKGYFDLIIKVY---------EKGQMSQYIDHLNPGD------FLQVRGP 105 (243)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECC---------TTCHHHHHHHTCCTTC------EEEEEEE
T ss_pred cCCceEEEEEEeeCCCEEEeeeeecCCCC-CCCEEEEEEEEc---------CCCCcchHhhcCCCCC------EEEEECC
Confidence 4689998765541 3579999999986 357899888643 3599999999876654 3778889
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+..++++|||+|||||||++|++++.... ....+++|+||+|+.+ |++|++||+++++.+..++++.+
T Consensus 106 ~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~---~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 181 (243)
T 2eix_A 106 KGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNP---KEKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYYV 181 (243)
T ss_dssp ECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCT---TCCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEEE
T ss_pred eEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCC---CCCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEEE
Confidence 9999998665689999999999999999999987531 1236899999999997 99999999999887666688899
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|++.. .++||++.+.+. +......+..||+||| ++|+++|++.|.+.+
T Consensus 182 ~s~~~~~~~g~~g~v~~~~l~~---~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~G 234 (243)
T 2eix_A 182 LNNPPAGWTGGVGFVSADMIKQ---HFSPPSSDIKVMMCGP-PMMNKAMQGHLETLG 234 (243)
T ss_dssp EEECCTTCCSEESSCCHHHHHH---HSCCTTSSEEEEEESS-HHHHHHHHHHHHHHT
T ss_pred eCCCCccccCcCCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 987532 357787543221 0000124578999999 899999999987654
|
| >1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=224.38 Aligned_cols=189 Identities=18% Similarity=0.210 Sum_probs=144.7
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE-
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~- 345 (509)
...+||++.+.+|. ..+|+|||+|+|.. +.++|+|+.+ +.|.+|+||+++.+|+ .+.|.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 92 (248)
T 1fdr_A 30 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTV---------PDGKLSPRLAALKPGD------EVQVVS 92 (248)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECC---------TTCSSHHHHHTCCTTC------EEEEES
T ss_pred CcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEe---------CCCchhhHHHhCCCcC------EEEEec
Confidence 45689998766663 45799999999863 7889887643 3599999999876654 36787
Q ss_pred EecCCCCCCCCC-CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CcCe
Q 010480 346 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQ 423 (509)
Q Consensus 346 ~~~g~F~lp~~~-~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~-~~~~ 423 (509)
.|.|.|.++.+. .++++|||+|||||||++|++++.... ...+++|+||+|+.+ |++|.+||+++++.. ..++
T Consensus 93 gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 167 (248)
T 1fdr_A 93 EAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD----RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLR 167 (248)
T ss_dssp SCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT----TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEE
T ss_pred CCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC----CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEE
Confidence 778999987543 689999999999999999999875321 136899999999997 999999999998753 3557
Q ss_pred EEEEEecCCC---CcccchhhHhhcH-HHHHHH-H-hCCCEEEEecCCcchHHHHHHHH-HHHHH
Q 010480 424 LIVAFSREGP---TKEYVQHKMMEKS-SDIWNM-L-SEGAYLYVCGDAKSMARDVHRTL-HTIVQ 481 (509)
Q Consensus 424 ~~~a~Sr~~~---~~~yvq~~i~~~~-~~v~~~-l-~~~~~iyvCGp~~~M~~~v~~~L-~~i~~ 481 (509)
++.++|+++. .+++|++.+.+.. +..... . ..+..||+||| ++|+++|++.| .+.+.
T Consensus 168 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~~G~ 231 (248)
T 1fdr_A 168 IQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKETRQM 231 (248)
T ss_dssp EEEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHHHCC
T ss_pred EEEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHHcCC
Confidence 8889998754 3678888776531 111111 1 24689999999 89999999998 76543
|
| >1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-26 Score=229.41 Aligned_cols=182 Identities=23% Similarity=0.275 Sum_probs=146.1
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+.+|. ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||+ ++.+|+ .+.|..|
T Consensus 138 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~gP 200 (338)
T 1krh_A 138 HFLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRNV---------PQGKMSEYLSVQAKAGD------KMSFTGP 200 (338)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEECC---------TTCHHHHHHHTTCCTTC------EEEEEEE
T ss_pred CcCCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEEc---------CCCCchhhHhhccCCCC------EEEEECC
Confidence 34689999776676 5789999999986 57899888643 3589999996 555543 4788889
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+ .+++||||+|||||||++|++++...+ ...+++||||+|+.+ |++|.+||+++++....++++.+
T Consensus 201 ~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~----~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~ 274 (338)
T 1krh_A 201 FGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKG----SEHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTV 274 (338)
T ss_dssp ECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHC----CSSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEE
T ss_pred ccceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcC----CCCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 999998765 489999999999999999999987642 136899999999997 99999999999887666788889
Q ss_pred EecCCC---CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 428 FSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 428 ~Sr~~~---~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+|+++. .++||++.+.+. .+. ..+..||+||| ++|++++++.|.+.+
T Consensus 275 ~s~~~~~~~~~g~v~~~l~~~--~~~---~~~~~vy~CGp-~~m~~~v~~~l~~~G 324 (338)
T 1krh_A 275 VAHAESQHERKGYVTGHIEYD--WLN---GGEVDVYLCGP-VPMVEAVRSWLDTQG 324 (338)
T ss_dssp ETTCCSSSSEESCSGGGCCGG--GGG---GGCSEEEEEEE-HHHHHHHHHHHHHHT
T ss_pred EecCCCCCCccCccCHHHHHh--hcc---cCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 998654 367898877632 111 24679999999 899999999987653
|
| >1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-26 Score=226.56 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=143.4
Q ss_pred CChhhhHHhhcC---CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p---~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+||++.+.+| ...+|+|||+|+|. .++.++|+|+++.+.+..+....|.+|+||+++.+|+ .+.|..|
T Consensus 47 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP 119 (275)
T 1umk_A 47 LPVGQHIYLSARIDGNLVVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD------TIEFRGP 119 (275)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC------EEEEEEE
T ss_pred CCCCcEEEEEEeeCCcEEEeccccCCccC-CCCeEEEEEEEeccCcccccCCCChhHHHHhcCCCCC------EEEEEcC
Confidence 468999865443 23689999999986 3578999998653333222335699999998876654 3678888
Q ss_pred cCCCCC--------CCC--------CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHH
Q 010480 348 QSNFKL--------PAD--------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 411 (509)
Q Consensus 348 ~g~F~l--------p~~--------~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~e 411 (509)
.|.|.+ +.+ ..+++||||+|||||||++|++++.... ...++++|+||+|+.+ |++|.+|
T Consensus 120 ~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~---~~~~~v~l~~~~r~~~-d~~~~~e 195 (275)
T 1umk_A 120 SGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP---DDHTVCHLLFANQTEK-DILLRPE 195 (275)
T ss_dssp ECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCT---TCCCEEEEEEEESSGG-GCTTHHH
T ss_pred ccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCC---CCCcEEEEEEEcCCHH-HhhHHHH
Confidence 888754 321 3578999999999999999999987531 1236899999999987 9999999
Q ss_pred HHHHHHcCC-cCeEEEEEecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHH-HHHHHHHHHH
Q 010480 412 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR-DVHRTLHTIV 480 (509)
Q Consensus 412 l~~~~~~~~-~~~~~~a~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~-~v~~~L~~i~ 480 (509)
|+++.+.+. .++++.++|+++. .++||++.+.+. .......++.||+||| ++|++ ++++.|.+.+
T Consensus 196 l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~G 266 (275)
T 1umk_A 196 LEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHVG 266 (275)
T ss_dssp HHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHHT
T ss_pred HHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHcC
Confidence 999987654 4578888898643 357787643321 1101124789999999 89999 8999988754
|
| >4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-26 Score=228.37 Aligned_cols=203 Identities=17% Similarity=0.219 Sum_probs=150.8
Q ss_pred CCChhhhHHhhcC---CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE-
Q 010480 270 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p---~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~- 345 (509)
...+||++.+.+| ....|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++.+|+ .+.|.
T Consensus 46 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 108 (271)
T 4fk8_A 46 RFNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIKV---------QNGPLTSRLQHLKVGD------PVLIGK 108 (271)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEECC---------TTCTTHHHHTTCCTTC------EEEEES
T ss_pred CcCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEEE---------CCCchhhHHhcCCCCC------EEEEec
Confidence 3568999976656 23579999999986 36788777532 4599999998776654 37888
Q ss_pred EecCCCCCCC-CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC----
Q 010480 346 VRQSNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA---- 420 (509)
Q Consensus 346 ~~~g~F~lp~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~---- 420 (509)
.|.|.|.++. +..++++|||+|||||||++|++++..... ..+++|+||+|+.+ |++|.+||+++.+++.
T Consensus 109 gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~ 183 (271)
T 4fk8_A 109 KPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYER----FDKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGD 183 (271)
T ss_dssp CCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHH----CSEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHH
T ss_pred CCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCC----CCCEEEEEecCCHH-HHhHHHHHHHHHHhCccccc
Confidence 8889998875 357899999999999999999999876432 26899999999997 9999999999877654
Q ss_pred ----cCeEEEEEecCCC-CcccchhhHhhcHHHHHHH-----H-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHH
Q 010480 421 ----LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNM-----L-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSS 489 (509)
Q Consensus 421 ----~~~~~~a~Sr~~~-~~~yvq~~i~~~~~~v~~~-----l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~ 489 (509)
.++++.++|++.. .++++++.+.+. .+.+. + ..++.||+||| ++|+++|++.|.+.+.....+
T Consensus 184 ~~~~~~~~~~~~s~~~~~~~G~v~~~~~~~--~l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~gv~~~~i--- 257 (271)
T 4fk8_A 184 VIREKLVYYPTVTREEFENEGRITDLIASG--KLFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKAGLVEGKN--- 257 (271)
T ss_dssp HHHHHEEEEECC-------CCHHHHHHHHS--HHHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCBT---
T ss_pred cccceEEEEEEecCCccccccccChHHhcc--hhhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCchhhc---
Confidence 3467888888643 467888876543 11111 1 25789999999 899999999998876554433
Q ss_pred HHHHHHHHHHHCCCeEEeeC
Q 010480 490 KAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 490 ~a~~~~~~l~~~~Ry~~dvw 509 (509)
...|+|+.|.|
T Consensus 258 ---------~~~~~~~~E~y 268 (271)
T 4fk8_A 258 ---------SAPGHYVIERA 268 (271)
T ss_dssp ---------TBCBSEEEEES
T ss_pred ---------CCCCcEEEEEe
Confidence 33678887765
|
| >4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-25 Score=215.67 Aligned_cols=184 Identities=16% Similarity=0.281 Sum_probs=141.6
Q ss_pred CCChhhhHHhhcCCC-----CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVPRL-----QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~-----~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+||++.+.+|.. .+|+|||+|+|. .+.++|+|+.+ ..++...|.+|+||++ +.+|+ .+.
T Consensus 33 ~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~----~~~~~~~G~~S~~l~~~l~~G~------~v~ 100 (243)
T 4eh1_A 33 DYQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKRE----GVGSDNPGLVSHYLHNNVKVGD------SVK 100 (243)
T ss_dssp CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECT----TTTSSSCCHHHHHHHHHCCTTC------EEE
T ss_pred CcCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEe----ecCCCCCCeehhHHHhcCCCCC------EEE
Confidence 356899997766632 369999999986 36788877642 1122356999999985 55543 478
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|..|.|.|.++ +..+++||||+|||||||++|++++..... .+++|+||+|+.+ |++|.+||+++.+.+ .++
T Consensus 101 v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-----~~v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~ 172 (243)
T 4eh1_A 101 LYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-----SGVTYLYACNSAK-EHTFAQETAQLIAQQ-GWM 172 (243)
T ss_dssp EEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-----CSEEEEEEESSGG-GCTTHHHHHHHHHHH-TCE
T ss_pred EEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-----CeEEEEEEeCChh-hhhHHHHHHHHHHhC-CeE
Confidence 88899999988 567899999999999999999999886421 2399999999998 999999999998876 668
Q ss_pred EEEEEecCCC---CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 424 LIVAFSREGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 424 ~~~a~Sr~~~---~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
++.++|++.. .+++++..+. . +-..+..||+||| +.|+++|++.|.+.+.
T Consensus 173 ~~~~~s~~~~~~~~~g~~~~~~~-~------~~~~~~~vyvCGp-~~m~~~v~~~l~~~g~ 225 (243)
T 4eh1_A 173 QQVWYRDESADDVLQGEMQLAEL-I------LPIEDGDFYLCGP-IGFMQYVVKQLLALGV 225 (243)
T ss_dssp EEEEESSCCCTTCEESSCCCTTS-C------CCTTTCEEEEEEC-HHHHHHHHHHHHHHTC
T ss_pred EEEEEccCCCcccccCCccHHHe-e------ccCCCcEEEEECC-HHHHHHHHHHHHHcCC
Confidence 8899988644 2456654433 1 1135789999999 8999999999987643
|
| >1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-25 Score=231.04 Aligned_cols=183 Identities=15% Similarity=0.243 Sum_probs=141.9
Q ss_pred CCChhhhHHhhcCC-----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+||++.+.+|. ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.
T Consensus 182 ~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~ 244 (396)
T 1gvh_A 182 EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKRE---------EGGQVSNWLHNHANVGD------VVK 244 (396)
T ss_dssp CCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECC---------TTCHHHHHHHHTCCTTC------EEE
T ss_pred CCCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEE
Confidence 45689999766553 3479999999986 47899888642 35999999998 55543 478
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|..|.|.|.++.+..+|+||||+|||||||++|++++...+ ..++++|+||+|+.+ |++|++||+++++.+.+++
T Consensus 245 v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~ 319 (396)
T 1gvh_A 245 LVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG----HTAQVNWFHAAENGD-VHAFADEVKELGQSLPRFT 319 (396)
T ss_dssp EEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT----CCSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEE
T ss_pred EEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeE
Confidence 88999999997656789999999999999999999987642 137899999999998 9999999999998777778
Q ss_pred EEEEEecCCC---------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 424 LIVAFSREGP---------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 424 ~~~a~Sr~~~---------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++++|+++. ..++++....... + .+ .++.||+||| ++|+++|++.|.+.+
T Consensus 320 ~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~--~--~~-~~~~vyvCGp-~~m~~~v~~~L~~~G 379 (396)
T 1gvh_A 320 AHTWYRQPSEADRAKGQFDSEGLMDLSKLEGA--F--SD-PTMQFYLCGP-VGFMQFTAKQLVDLG 379 (396)
T ss_dssp EEEEESSCCHHHHHHTCCSEESSCCGGGSSSC--C--CC-TTCEEEEESC-HHHHHHHHHHHHHTT
T ss_pred EEEEECCCCccccccCccCccCcCCHHHHhhc--c--CC-CCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 8899998642 1344443211110 0 11 3789999999 899999999987643
|
| >2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=219.33 Aligned_cols=188 Identities=17% Similarity=0.216 Sum_probs=143.0
Q ss_pred CCChhhhHHhhcCC----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
...+|||+.+.+|. ..+|+|||+|+|.. +.++|+|+.+ +.|.+|+||+++.+|+ .+.|.
T Consensus 43 ~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~~---------~~G~~s~~l~~l~~Gd------~v~v~ 105 (272)
T 2bgi_A 43 RFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIKV---------PDGPLTSRLQHIKVGE------QIILR 105 (272)
T ss_dssp CCCTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEECC---------TTCTTHHHHTTCCTTC------EEEEE
T ss_pred ccCCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEEc---------cCCCchhHHHhCCCCC------EEEEe
Confidence 35689999766662 35799999999863 7888887643 3599999999776654 36787
Q ss_pred -EecCCCCCCCCC-CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHH-HHHH-----
Q 010480 346 -VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ----- 417 (509)
Q Consensus 346 -~~~g~F~lp~~~-~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~-~~~~----- 417 (509)
.|.|.|.++... .++++|||+|||||||++|++++.... ...+++|+||+|+.+ |++|.+||+ ++++
T Consensus 106 ~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~ 180 (272)
T 2bgi_A 106 PKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE----KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIG 180 (272)
T ss_dssp EEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT----SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTT
T ss_pred eCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhh
Confidence 688999887543 689999999999999999999875421 136899999999997 999999999 9987
Q ss_pred c--CCcCeEEEEEecCCC-CcccchhhHhhcH-HHHHHH--H-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 418 S--GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 418 ~--~~~~~~~~a~Sr~~~-~~~yvq~~i~~~~-~~v~~~--l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
. +..++++.++|++.. .++||++.+.+.. .....+ + ..++.||+||| ++|+++|++.|.+.+
T Consensus 181 ~~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 249 (272)
T 2bgi_A 181 ELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLESYG 249 (272)
T ss_dssp TTSTTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHTTT
T ss_pred cccCCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 3 245578889998742 4788988876531 111100 1 24689999999 899999999887654
|
| >4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-25 Score=226.91 Aligned_cols=185 Identities=14% Similarity=0.260 Sum_probs=142.9
Q ss_pred CCChhhhHHhhc--C--C---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhh-hcCCCccCCCCce
Q 010480 270 KPPLGVFFAAIV--P--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSW 341 (509)
Q Consensus 270 ~~~~~~~l~~~~--p--~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~-~~~~~~~~~~~~~ 341 (509)
...+||++.+.+ | . ..+|+|||+|+|. ++.++|+|+... ..+..+.|.+|+||+ ++.+|+ .
T Consensus 183 ~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~---~~~~~~~G~~S~~L~~~l~~Gd------~ 251 (399)
T 4g1v_A 183 PITPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEA---ARENFPAGLVSEYLHKDAKVGD------E 251 (399)
T ss_dssp CCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCC---CBTTBCCCHHHHHHHHTCCTTC------E
T ss_pred CCCCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEecc---CCCCCCCCEehhHHHhCCCCCC------E
Confidence 345899997653 3 3 3579999999986 377888876421 111235799999998 555543 4
Q ss_pred eeEEEecCCCCCCCC----CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHH
Q 010480 342 APIFVRQSNFKLPAD----AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 417 (509)
Q Consensus 342 v~v~~~~g~F~lp~~----~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~ 417 (509)
+.|..|.|.|.++.+ ..+|+||||+|||||||++|++++..... .++++|+||+|+.+ |++|.+||+++.+
T Consensus 252 v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~ 326 (399)
T 4g1v_A 252 IKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP----NRPIYWIQSSYDEK-TQAFKKHVDELLA 326 (399)
T ss_dssp EEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT----TSCEEEEEEESSST-TSTTHHHHHHHHT
T ss_pred EEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCC----CCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 788999999999865 57899999999999999999999986532 27899999999987 9999999999998
Q ss_pred cCCcCeEEEEEecCCCCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 418 SGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 418 ~~~~~~~~~a~Sr~~~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+..+++++++|++. ++++.. .+.+.+..++.||+||| ++|+++|++.|.+.+
T Consensus 327 ~~~~~~~~~~~s~~~---g~~~~~------~l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~G 379 (399)
T 4g1v_A 327 ECANVDKIIVHTDTE---PLINAA------FLKEKSPAHADVYTCGS-LAFMQAMIGHLKELE 379 (399)
T ss_dssp TCSSEEEEEEETTTS---CCCCHH------HHHHHSCSSCEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred hCCCcEEEEEEeCCC---CcccHH------HHHhhCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 877778999998764 455432 12233344799999999 899999999997654
|
| >1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-25 Score=215.83 Aligned_cols=172 Identities=22% Similarity=0.242 Sum_probs=134.1
Q ss_pred CChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEe
Q 010480 271 PPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 271 ~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~ 347 (509)
..+||++.+.+|. ..+|+|||+|+|.. .+.++|+|+.+ +.|.+|+||+++.+|+ .+.|..|
T Consensus 34 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~---------~~G~~S~~l~~l~~Gd------~v~v~gP 97 (262)
T 1ep3_B 34 DLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIG---------DETTGTYKLSKLESGA------KVDVMGP 97 (262)
T ss_dssp CSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECC---------CTTSHHHHHHTCCTTC------EEEEEEE
T ss_pred CCCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEe---------cCCchHHHHhcCCCCC------EEEEEcc
Confidence 4689999766664 68899999999863 57899888642 3588999999876654 3788888
Q ss_pred cCC-CCCCCC-CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEE
Q 010480 348 QSN-FKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 425 (509)
Q Consensus 348 ~g~-F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~ 425 (509)
.|+ |.++.+ ..+++||||+|||||||++|++++...+ .+++||||+|+.+ |++|.+||++++.. +++
T Consensus 98 ~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~~ 166 (262)
T 1ep3_B 98 LGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLK 166 (262)
T ss_dssp ESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEE
T ss_pred cCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHhhhccC----cEE
Confidence 887 998764 4689999999999999999999987631 6799999999998 99999999986532 344
Q ss_pred EEEecCC--CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 426 VAFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 426 ~a~Sr~~--~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
++ ++++ ..++||++.+.+. +.++..||+||| ++|++++++ |.+.
T Consensus 167 ~~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp-~~m~~~v~~-l~~~ 212 (262)
T 1ep3_B 167 IA-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAK-KYDQ 212 (262)
T ss_dssp EE-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHH-HTTT
T ss_pred EE-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECC-HHHHHHHHH-HHhC
Confidence 43 4432 2467888765542 234689999999 899999998 8653
|
| >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-25 Score=217.49 Aligned_cols=188 Identities=15% Similarity=0.165 Sum_probs=141.1
Q ss_pred CCChhhhHHhhcCC---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE-
Q 010480 270 KPPLGVFFAAIVPR---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~- 345 (509)
...+||++.+.+|. ...|+|||+|+|.. +.++|+|+.+ +.|.+|+||+++.+|+ .+.|.
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~ 92 (257)
T 2qdx_A 30 RFKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKV---------PDGPLTSRLQHLKEGD------ELMVSR 92 (257)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECC---------TTCTTHHHHTTCCTTC------EEEECS
T ss_pred ccCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEEe---------CCCcchhHHHhCCCCC------EEEEec
Confidence 35689999765552 35799999999863 7888877643 3599999999876654 36676
Q ss_pred EecCCCCCCCCC-CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHH-HHHH-----c
Q 010480 346 VRQSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S 418 (509)
Q Consensus 346 ~~~g~F~lp~~~-~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~-~~~~-----~ 418 (509)
.|.|.|.++... .+++||||+|||||||++|++++...+. ..+++|+||+|+.+ |++|.+||+ ++++ +
T Consensus 93 gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~ 167 (257)
T 2qdx_A 93 KPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER----YEKVILVHGVRWVS-ELAYADFITKVLPEHEYFGD 167 (257)
T ss_dssp CCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH----CSEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHH
T ss_pred CCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC----CCeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhc
Confidence 577889887543 6899999999999999999998765432 26899999999997 999999999 8865 1
Q ss_pred --CCcCeEEEEEecCCC-CcccchhhHhhcH-HHHHHH--H-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 419 --GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 419 --~~~~~~~~a~Sr~~~-~~~yvq~~i~~~~-~~v~~~--l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
...++++.++|++.. .+++|++.+.+.. +..... + ..++.||+||| ++|+++|++.|.+.+
T Consensus 168 ~~~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~G 235 (257)
T 2qdx_A 168 QVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDSFG 235 (257)
T ss_dssp HHHHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred cCCCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 134478888998743 4688988776531 111100 1 24689999999 899999999987654
|
| >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-25 Score=227.84 Aligned_cols=186 Identities=22% Similarity=0.306 Sum_probs=141.1
Q ss_pred CCChhhhHHhhcC--C---CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVP--R---LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p--~---~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+||++.+.+| . ..+|+|||+|+|. .+.++|+|+.+ +....+.|.+|+||++ +.+|+ .+.
T Consensus 184 ~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~----~~~~~~~G~~S~~L~~~l~~Gd------~v~ 251 (403)
T 1cqx_A 184 NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVK 251 (403)
T ss_dssp CCCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEE
T ss_pred CCCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEEC----CCCCCCCCeehHHHhhCCCCCC------EEE
Confidence 3468999976555 2 2479999999986 47899888743 1112346999999995 65543 367
Q ss_pred EEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCe
Q 010480 344 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 423 (509)
Q Consensus 344 v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 423 (509)
|..|.|.|.++.+..+|+||||+|||||||++|++++.. . ..++++|+||+|+.+ |++|++||+++++.+..++
T Consensus 252 v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~ 325 (403)
T 1cqx_A 252 LAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A----PPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLD 325 (403)
T ss_dssp ECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S----SCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEE
T ss_pred EecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C----CCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcE
Confidence 888889999975567899999999999999999999864 1 137899999999998 9999999999988776678
Q ss_pred EEEEEecCCCC---------cccchhhHhhcHHHHHHH-HhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 424 LIVAFSREGPT---------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 424 ~~~a~Sr~~~~---------~~yvq~~i~~~~~~v~~~-l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
+++++|++... .++++... +.+. ...++.+|+||| ++|+++|++.|.+.+
T Consensus 326 ~~~~~s~~~~~~~~~~~~~~~G~i~~~~------l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~G 385 (403)
T 1cqx_A 326 LFVFYDQPLPEDVQGRDYDYPGLVDVKQ------IEKSILLPDADYYICGP-IPFMRMQHDALKNLG 385 (403)
T ss_dssp EEEEESSCCTTCCBTTTBSEESSCCGGG------SHHHHCCTTCEEEEESS-HHHHHHHHHHHHHTT
T ss_pred EEEEECCCCcccccccccCcCCCcCHHH------HhhccCCCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 88899986432 23343211 1221 123789999999 899999999987654
|
| >2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-25 Score=219.00 Aligned_cols=194 Identities=14% Similarity=0.224 Sum_probs=138.3
Q ss_pred CCChhhhHHhhcC---CCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCc-cccCcCchhhhhcCCCccCCCCceeeEE
Q 010480 270 KPPLGVFFAAIVP---RLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIF 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p---~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~-~~~G~~S~~L~~~~~~~~~~~~~~v~v~ 345 (509)
...+||++.+.++ ...+|+|||+|+|.. ++.++|+|+++.+ ...++ ...|.+|+||+++.+|+ .+.|.
T Consensus 42 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~-~~~~~~~~~G~~s~~l~~l~~Gd------~v~v~ 113 (270)
T 2cnd_A 42 GLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFK-NEHPKFPNGGLMTQYLDSLPVGS------YIDVK 113 (270)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCS-SCBTTBTTCCHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEecc-CcccccCCCCchhhHHhcCCCCC------EEEEE
Confidence 3568998865433 236799999999863 5789998876521 11111 13599999998776654 36788
Q ss_pred EecCC--------CCCCC--CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHH
Q 010480 346 VRQSN--------FKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 415 (509)
Q Consensus 346 ~~~g~--------F~lp~--~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~ 415 (509)
.|.|. |.++. +..+++||||+|||||||++|++++..... ...++++||||+|+.+ |++|.+||+++
T Consensus 114 gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~--~~~~~v~l~~~~r~~~-d~~~~~el~~l 190 (270)
T 2cnd_A 114 GPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRW 190 (270)
T ss_dssp EEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHH
T ss_pred CCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC--CCCcEEEEEEEcCCHH-HcchHHHHHHH
Confidence 88775 66653 246899999999999999999999876421 1236899999999998 99999999999
Q ss_pred HHcCC-cCeEEEEEecC---CC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHH-HHHHHHH
Q 010480 416 VQSGA-LSQLIVAFSRE---GP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHT 478 (509)
Q Consensus 416 ~~~~~-~~~~~~a~Sr~---~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~-v~~~L~~ 478 (509)
++.+. .++++.++|++ +. .++||++.+.+. .......++.||+||| ++|+++ +++.|.+
T Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 191 AAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGP-PPMIQFAISPNLEK 258 (270)
T ss_dssp HHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECC-HHHHHTTTHHHHHT
T ss_pred HHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECC-HHHHHHHHHHHHHH
Confidence 87653 45788888872 11 357787754321 1111123568999999 899996 5777765
|
| >2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-24 Score=214.26 Aligned_cols=174 Identities=15% Similarity=0.192 Sum_probs=133.5
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCc-Cchhhh-hcCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL-CSTWMK-NSLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~-~S~~L~-~~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+.+|...+|+|||+|+|.. .+.++|+|+.+ ..|. +|+||+ ++.+|+ .+.|..|
T Consensus 38 ~~~pGQ~v~l~~~~g~~R~ySi~s~~~~-~~~l~i~Vk~~---------~~G~g~S~~L~~~l~~Gd------~v~v~gP 101 (321)
T 2pia_A 38 PFEAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKRD---------SNGRGGSISFIDDTSEGD------AVEVSLP 101 (321)
T ss_dssp CCCTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEECC---------TTSCSHHHHHHHSCCTTC------EEEECCC
T ss_pred CCCCCCEEEEECCCCCcEEEEeCCCCCC-CCeEEEEEEEe---------cCCcchhHHHHhcCCCCC------EEEEeCC
Confidence 3468999987667668999999999873 57889888643 3577 899999 565543 3678888
Q ss_pred cCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEE
Q 010480 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 427 (509)
Q Consensus 348 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a 427 (509)
.|.|.++.+ .+++||||+|||||||++|++++...+ ..+++|+||+|+.+ |++|.+||++++ .+. ++.+.
T Consensus 102 ~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~-----~~~v~l~~~~r~~~-~~~~~~el~~l~-~~~--~~~~~ 171 (321)
T 2pia_A 102 RNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG-----LRSFRLYYLTRDPE-GTAFFDELTSDE-WRS--DVKIH 171 (321)
T ss_dssp BCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC-----SSEEEEEEEESCGG-GCTTHHHHHSTT-TTT--TEEEE
T ss_pred ccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC-----CCcEEEEEEECChh-hhHHHHHHhcCc-cCC--eEEEE
Confidence 899999764 679999999999999999999987642 16799999999998 999999999885 233 34555
Q ss_pred EecCC-CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHH
Q 010480 428 FSREG-PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 478 (509)
Q Consensus 428 ~Sr~~-~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~ 478 (509)
++++. ..+.++++.+.. ...+..||+||| ++|+++|++.|.+
T Consensus 172 ~~~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 172 HDHGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp ECTTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred ECCCcccCccCHHHHhcc--------cCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 66542 223444443332 125689999999 8999999999876
|
| >2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-19 Score=175.87 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=116.9
Q ss_pred CChhhhHHhhcCC----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 271 PPLGVFFAAIVPR----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 271 ~~~~~~l~~~~p~----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
..+||++.+.+|. ...|+|||+|.+. +.++|.|.++ ...|.+|+||+++.+|+ .+.|..
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~--------~~~G~~S~~l~~l~~Gd------~l~v~g 101 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLH--------DTDGPASSWAKTAQVGE------LIQIGG 101 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECC--------SSCCHHHHHHHHCCTTC------EEEEEE
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEe--------CCCCcHHHHHhhCCCCC------EEEEec
Confidence 4589999876664 4569999999764 5666665432 11388999999876654 378889
Q ss_pred ecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEE
Q 010480 347 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 426 (509)
Q Consensus 347 ~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~ 426 (509)
|.|.|.++.+ .++++|||+|||||||++|++++.. ..++++++++|+.+ |.+..+ ....++++.
T Consensus 102 P~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~-------~~~~~~~~~~~~~~-d~~~l~-------~~~~~~v~~ 165 (252)
T 2gpj_A 102 PGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPN-------NAVGYAVIEVLSEA-DIQPLV-------HPEHVELHW 165 (252)
T ss_dssp EECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCT-------TCEEEEEEEESSGG-GCCCCC-------CCTEEEEEE
T ss_pred CCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCC-------CCcEEEEEEECCHH-Hhhccc-------CCCCcEEEE
Confidence 9999998754 4789999999999999999998732 14678999999976 654321 122335655
Q ss_pred EEecCCCC-cccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHH-HHH
Q 010480 427 AFSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH-TIV 480 (509)
Q Consensus 427 a~Sr~~~~-~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~-~i~ 480 (509)
+++.+... ...+.+.+.+. .+...+.++|+||| ++|++++++.|. +.+
T Consensus 166 ~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~vy~CGP-~~m~~av~~~l~~~~G 215 (252)
T 2gpj_A 166 VINPEADPEGRPLVERIAQL-----PWLAGEPAVWIACE-FNSMRALRRHFKQAHA 215 (252)
T ss_dssp EECSSCCTTCHHHHHHHTTS-----CCCSSCEEEEEEEE-HHHHHHHHHHHHHHCC
T ss_pred EeCCCCCcccHHHHHHHHhc-----cCCCCCcEEEEEcC-HHHHHHHHHHHHHhcC
Confidence 55543221 11232222211 00023568999999 899999999987 443
|
| >3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-18 Score=155.73 Aligned_cols=133 Identities=12% Similarity=0.227 Sum_probs=89.3
Q ss_pred EecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhh---cCCCCCeEEEEeccCCCCccc-cHHHHHHHHHc---
Q 010480 346 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA---GAELGPSLLFFGCRNRKMDYI-YEDELNNFVQS--- 418 (509)
Q Consensus 346 ~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~---~~~~~~~~L~~G~R~~~~d~l-y~~el~~~~~~--- 418 (509)
.|.|.|.++....+++||||||||||||++|+++++..... +....+++|+||+|+.+ +++ |.+||+++.+.
T Consensus 5 GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~~~~ 83 (186)
T 3a1f_A 5 GPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQMQE 83 (186)
T ss_dssp STTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHHHhh
Confidence 34677765434467899999999999999999998865321 11237899999999998 888 99999999875
Q ss_pred ---CCcCeEEEEEecCCC---Ccccchh-----hH----------hhcHHHHHH----HHh-CCCEEEEecCCcchHHHH
Q 010480 419 ---GALSQLIVAFSREGP---TKEYVQH-----KM----------MEKSSDIWN----MLS-EGAYLYVCGDAKSMARDV 472 (509)
Q Consensus 419 ---~~~~~~~~a~Sr~~~---~~~yvq~-----~i----------~~~~~~v~~----~l~-~~~~iyvCGp~~~M~~~v 472 (509)
...+++++++|++.. .+.|++. .+ +-..+.+.+ ... .+..||+||| ++|+++|
T Consensus 84 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~~~v 162 (186)
T 3a1f_A 84 RNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALAETL 162 (186)
T ss_dssp TTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHHHHH
T ss_pred ccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHHHHH
Confidence 234578888887522 1112220 00 001111221 111 3578999999 8999999
Q ss_pred HHHHHHHH
Q 010480 473 HRTLHTIV 480 (509)
Q Consensus 473 ~~~L~~i~ 480 (509)
+++|.+.+
T Consensus 163 ~~~l~~~g 170 (186)
T 3a1f_A 163 SKQSISNS 170 (186)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99988764
|
| >3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-17 Score=145.79 Aligned_cols=121 Identities=11% Similarity=0.042 Sum_probs=84.7
Q ss_pred eEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcC
Q 010480 343 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 422 (509)
Q Consensus 343 ~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~ 422 (509)
.|.+|.|+|...+. .++++||||||||||++||+++....+ .+++|+ |+|+++ |++|++||++++.+ .
T Consensus 4 ~v~GP~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~~~------~~v~l~-g~R~~~-~~~~~~el~~l~~~---~ 71 (142)
T 3lyu_A 4 NVAGPLGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 71 (142)
T ss_dssp ---CCCSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHHTT------CEEEEE-EEEEGG-GCCSHHHHHTTSSE---E
T ss_pred eeeCCCCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhh---e
Confidence 45667788766543 689999999999999999999987531 579999 999998 99999999987542 1
Q ss_pred eEEEEEecCCC--------CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 423 QLIVAFSREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 423 ~~~~a~Sr~~~--------~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
.+..+++++.. .+++|.+.+.+. ... .+...||+||| ++|+++|.+.+.+...
T Consensus 72 ~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~----~~~-~~~~~vy~CGP-~~Mm~av~~~l~~~~~ 132 (142)
T 3lyu_A 72 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGP-VGDQKQVFEVVKEYGV 132 (142)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHHHHH----HHS-SCCSEEEEESC-HHHHHHHHHHHHHHTC
T ss_pred EEEEeecccccCCCCCCCCCccchhHHHHHh----ccc-CCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 23334443211 245555544321 111 24568999999 8999999999887653
|
| >3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=150.10 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=83.5
Q ss_pred eEEEecCCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcC
Q 010480 343 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 422 (509)
Q Consensus 343 ~v~~~~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~ 422 (509)
.|..|.|+|.... ..+|++||||||||||++||+++....+ .+++|+ |+|+.+ |.+|.+||++++.+ .
T Consensus 9 ~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~------~~v~l~-g~r~~~-d~~~~~el~~l~~~---~ 76 (158)
T 3lrx_A 9 NVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 76 (158)
T ss_dssp ---CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT------CEEEEE-EECBGG-GCCSHHHHHHHSSE---E
T ss_pred EEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhc---e
Confidence 6777888865433 4689999999999999999999986532 579999 999998 99999999998642 1
Q ss_pred eEEEEEecCC--------CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 423 QLIVAFSREG--------PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 423 ~~~~a~Sr~~--------~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+..+++++. +.+++|++.+.+. ... .+...||+||| ++|+++|.+.|.+.+
T Consensus 77 ~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~----l~~-~~~~~vy~CGP-~~mm~~v~~~l~~~G 136 (158)
T 3lrx_A 77 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGP-VGDQKQVFEVVKEYG 136 (158)
T ss_dssp EECCBCCCTTSCHHHHHHHHHHHHHHHHHHH----HHH-SCCSEEEEESC-HHHHHHHHHHHGGGT
T ss_pred EEEEeeccccccCCCCCCCCcccccHHHHHh----hcc-CCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 2222233321 1245665544321 111 24578999999 899999999887754
|
| >3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.2e-10 Score=105.06 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=52.1
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCC
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDD 61 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~ 61 (509)
+||+|| |+|+++|++|||++++|+|+||++.|+|++|++|.+.||++|++.++.+
T Consensus 137 ~F~~a~--k~ld~~L~~lGa~~l~~~g~~D~~~~~e~~~~~W~~~l~~~l~~~~~~~ 191 (219)
T 3hr4_A 137 RFCAFA--HDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAACETFDVR 191 (219)
T ss_dssp STTHHH--HHHHHHHHHHTCEESSCCEEEETTSCHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHhHHH--HHHHHHHHHCCCCEeeCCEEEecCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 599999 9999999999999999999999999999999999999999999998643
|
| >1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.7e-06 Score=77.40 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=46.3
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 55 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~ 55 (509)
+||.|+ |.|+++|+++||+++.|++++|++.+++.+|+.|.+.||++|.
T Consensus 119 ~f~~a~--~~l~~~L~~~Ga~~v~~~~~~d~~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 119 TYQKVP--AFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp GTTHHH--HHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred hHhHHH--HHHHHHHHHCCCeEeeccEEEecCCChHHHHHHHHHHHHHHhc
Confidence 799999 9999999999999999999999877899999999999999996
|
| >2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00014 Score=63.52 Aligned_cols=48 Identities=23% Similarity=0.032 Sum_probs=43.7
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCC--CchhhHHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 54 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~--~~e~~f~~W~~~l~~~l 54 (509)
+||.|+ |.|+++|+++||+++.+.+.+|+.. +.++++++|.++++++|
T Consensus 97 ~~~~a~--~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 97 TFCGAI--DKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp CSSSCT--THHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 589999 8899999999999999999999854 67888999999999876
|
| >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00036 Score=62.40 Aligned_cols=50 Identities=26% Similarity=0.237 Sum_probs=44.7
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhh
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 58 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~ 58 (509)
+||.|+ +.|+++|+++||+++.+.+.+| .+.++.++.|.++++++|...+
T Consensus 108 ~~~~a~--~~l~~~l~~~G~~~v~~~~~~d--~~~~~~~~~w~~~l~~~l~~~~ 157 (167)
T 1ykg_A 108 FFCQSG--KDFDSKLAELGGERLLDRVDAD--VEYQAAASEWRARVVDALKSRA 157 (167)
T ss_dssp STTHHH--HHHHHHHHHHTCEESSCCEEEC--TTCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHH--HHHHHHHHHCCCeEeecceecC--CCcHHHHHHHHHHHHHHHHhhc
Confidence 589998 8999999999999999999888 4678899999999999997654
|
| >2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0084 Score=54.06 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=41.3
Q ss_pred ccccCCcchhHHHHHhhcCCeecccC-------------------cccCC-CC---CchhhHHHHHHHHHHHHHhh
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPV-------------------GLGDD-DQ---CIEDDFSAWRELVWPELDNL 57 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~-------------------g~gDd-~~---~~e~~f~~W~~~l~~~l~~~ 57 (509)
+||.|. +.|+++|.++||+.+.+. |++.| ++ ..++.++.|.+.||++|...
T Consensus 106 ~f~~a~--~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~ 179 (182)
T 2wc1_A 106 EFVNAL--FFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLALDQDNQAALTPERLKGWLSLIAADFGLV 179 (182)
T ss_dssp STTTHH--HHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSEEECTTTCGGGHHHHHHHHHHHTHHHHTCC
T ss_pred hHHHHH--HHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCceeeeeccCCCCccccHHHHHHHHHHHHHHHhcc
Confidence 689988 889999999999998873 77643 22 25778999999999998654
|
| >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=0.095 Score=45.08 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=37.1
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCC-CCchhhHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPE 53 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~-~~~e~~f~~W~~~l~~~ 53 (509)
+||.|+ +.|+++|+++|++++.+....|.. ++....++.|.++|+..
T Consensus 100 ~~~~a~--~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 100 HFCGAV--PAIEERAKELGATIIAEGLKMEGDASNDPEAVASFAEDVLKQ 147 (148)
T ss_dssp STTTHH--HHHHHHHHHTTCEECSCCEEEESSGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHH--HHHHHHHHHcCCEEeecceEeecCcchHHHHHHHHHHHHHhh
Confidence 689888 889999999999999987665542 11556788998888764
|
| >1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... | Back alignment and structure |
|---|
Probab=90.13 E-value=0.1 Score=44.81 Aligned_cols=47 Identities=23% Similarity=0.168 Sum_probs=37.2
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCC-CchhhHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQ-CIEDDFSAWRELVWPE 53 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~-~~e~~f~~W~~~l~~~ 53 (509)
+||.|. +.|+++|.++|++.+.+....|... +.++.++.|.++|+++
T Consensus 99 ~~~~a~--~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 146 (147)
T 1f4p_A 99 YFCGAV--DAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGA 146 (147)
T ss_dssp STTHHH--HHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHH--HHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHhh
Confidence 388888 8899999999999999876665432 2566799999988764
|
| >3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=0.88 Score=44.29 Aligned_cols=51 Identities=14% Similarity=0.378 Sum_probs=42.9
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 155 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 155 (509)
+....|+.++|+.+++++..+...++++|+|+.+ ..+.|+||.++.|.++.
T Consensus 28 ~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~ 78 (310)
T 3vo2_A 28 YKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADG 78 (310)
T ss_dssp BBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSS
T ss_pred ecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCC
Confidence 4456788999999999998777778999999965 46789999999998764
|
| >1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* | Back alignment and structure |
|---|
Probab=86.22 E-value=0.26 Score=43.79 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=36.9
Q ss_pred ccccCCcchhHHHHHhhcCCeecccC--------------------cc-cCCC---CCchhhHHHHHHHHHHHHHh
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPV--------------------GL-GDDD---QCIEDDFSAWRELVWPELDN 56 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~--------------------g~-gDd~---~~~e~~f~~W~~~l~~~l~~ 56 (509)
+||.|. +.|+++|+++||+.+... |+ -|++ ...++.++.|.+.++++|..
T Consensus 96 ~f~~a~--~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 96 YFCDAL--GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp STTHHH--HHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHH--HHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCCCCcccccHHHHHHHHHHHHHHhhh
Confidence 689988 889999999999988641 21 1211 12456789999999998854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 509 | ||||
| d1ja1a1 | 279 | b.43.4.1 (A:240-518) NADPH-cytochrome p450 reducta | 5e-88 | |
| d1f20a1 | 270 | b.43.4.1 (A:963-1232) Neuronal nitric-oxide syntha | 6e-68 | |
| d1ja1a3 | 160 | c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta | 2e-60 | |
| d1ddga1 | 221 | b.43.4.1 (A:226-446) Sulfite reductase flavoprotei | 3e-51 | |
| d1f20a2 | 165 | c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth | 3e-48 | |
| d1ddga2 | 153 | c.25.1.4 (A:447-599) Sulfite reductase flavoprotei | 5e-46 | |
| d1fnda2 | 160 | c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo | 4e-36 | |
| d1jb9a2 | 154 | c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo | 3e-35 | |
| d2bmwa2 | 162 | c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo | 5e-29 | |
| d1a8pa2 | 158 | c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo | 2e-12 | |
| d2cnda2 | 146 | c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea | 4e-12 | |
| d1tvca2 | 141 | c.25.1.2 (A:111-251) Methane monooxygenase compone | 5e-12 | |
| d1gvha3 | 143 | c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d | 5e-11 | |
| d1cqxa3 | 142 | c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d | 7e-11 | |
| d1qfja2 | 135 | c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase | 6e-10 | |
| d1krha2 | 133 | c.25.1.2 (A:206-338) Benzoate dioxygenase reductas | 2e-09 | |
| d1umka2 | 147 | c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma | 2e-08 | |
| d2piaa2 | 120 | c.25.1.2 (A:104-223) Phthalate dioxygenase reducta | 8e-08 | |
| d1ja1a2 | 177 | c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductas | 1e-07 | |
| d1jb9a1 | 157 | b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxi | 2e-07 | |
| d1bvyf_ | 152 | c.23.5.1 (F:) FMN-binding domain of the cytochrome | 3e-07 | |
| d1fdra2 | 148 | c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo | 1e-06 | |
| d1tlla2 | 202 | c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FM | 1e-05 | |
| d2bmwa1 | 133 | b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi | 8e-05 | |
| d2bmwa1 | 133 | b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi | 4e-04 | |
| d1fnda1 | 136 | b.43.4.2 (A:19-154) Ferredoxin reductase (flavodox | 8e-05 | |
| d1ykga1 | 146 | c.23.5.2 (A:63-208) Sulfite reductase alpha-compon | 2e-04 | |
| d1ep3b2 | 160 | c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase | 0.001 |
| >d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 269 bits (689), Expect = 5e-88
Identities = 93/286 (32%), Positives = 162/286 (56%), Gaps = 14/286 (4%)
Query: 73 AAISEYRVVFYDNADAS---VGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDR 127
++I +Y +V +++ D + GE + N +DA++P + V ++L+ + +R
Sbjct: 1 SSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGT-ER 59
Query: 128 SCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 187
HLE DI+ + + YE+GDHV VY N S V + +LG D SL+ E+
Sbjct: 60 HLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKK 119
Query: 188 GKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAG--K 245
P P + RTALT Y D+ + P+ + L LA +AS+P+E + L +AS +G K
Sbjct: 120 -----HPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGK 174
Query: 246 DEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVT 305
+ Y W+V ++R +L ++ ++PS +PP+ ++PRLQ RYY+I+SS +V P+ +H+
Sbjct: 175 ELYLSWVVEARRHILAILQDYPSLRPPID-HLCELLPRLQARYYAIASSSKVHPNSVHIC 233
Query: 306 CALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 351
V + +GRV+KG+ ++W++ P ++ + P+FVR+S F
Sbjct: 234 AVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQF 279
|
| >d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 270 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 217 bits (554), Expect = 6e-68
Identities = 80/283 (28%), Positives = 125/283 (44%), Gaps = 27/283 (9%)
Query: 76 SEYRVVFYDNA-DASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEF 134
+++R+ + A D + G + + + R+ L +P S RS +
Sbjct: 5 NKFRLTYVAEAPDLTQGLSNVHKKR---------VSAARLLSRQNLQSPKSSRSTIFVRL 55
Query: 135 DIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSLHTDKEDGTPLGKST 191
G L Y+ GDH+GV+ N + V + L +P + + +E T LG +
Sbjct: 56 HTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNTALGVIS 115
Query: 192 ---LPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEY 248
PPC++ A Y D+ + P L A+ A++ E RL L+ G EY
Sbjct: 116 NWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEY 173
Query: 249 AQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCAL 308
+W +++EV+ EFPS + P + LQPRYYSISSSP + P +H+T A+
Sbjct: 174 EEWKWGKNPTMVEVLEEFPSIQMPAT-LLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAI 232
Query: 309 VYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 349
V T G VH G+CS+W+ P FVR +
Sbjct: 233 VSYHTRDGEGPVHHGVCSSWLNRIQA------DDVVPCFVRGA 269
|
| >d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 194 bits (493), Expect = 2e-60
Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 1/159 (0%)
Query: 352 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 411
+LP + P+IM+GPGTG+APF GF+QER L+E G E+G +LL++GCR DY+Y +E
Sbjct: 1 RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREE 60
Query: 412 LNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-GAYLYVCGDAKSMAR 470
L F + GAL+QL VAFSRE K YVQH + +W ++ E GA++YV GDA++MA+
Sbjct: 61 LARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAK 120
Query: 471 DVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
DV T + IV E G ++ ++A VK L GRY +VW
Sbjct: 121 DVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVW 159
|
| >d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Score = 172 bits (436), Expect = 3e-51
Identities = 52/250 (20%), Positives = 97/250 (38%), Gaps = 35/250 (14%)
Query: 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEA 163
Y P ++++V +++ +S++ H+E D+ +GL Y+ GD +GV+ +N V+E
Sbjct: 6 YSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEL 65
Query: 164 LSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLAL 223
+ LL L D L AL + +L + +
Sbjct: 66 VELLWLKGDEPV-----------------TVEGKTLPLNEALQWHFELTVNTAN----IV 104
Query: 224 AAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPR 283
+A+ L + A YA + + M F A+ ++
Sbjct: 105 ENYATLTRSETLLPLVGDKAKLQHYA------ATTPIVDMVRFSPAQLDAEALI-NLLRP 157
Query: 284 LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 343
L PR YSI+SS + +HVT +V GR G S+++ + + +
Sbjct: 158 LTPRLYSIASSQAEVENEVHVTVGVV-RYDVEGRARAGGASSFLADRVE-----EEGEVR 211
Query: 344 IFVRQS-NFK 352
+F+ + NF+
Sbjct: 212 VFIEHNDNFR 221
|
| >d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 162 bits (410), Expect = 3e-48
Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 5/163 (3%)
Query: 351 FKLPADAKVPIIMIGPGTGLAPFRGFLQER-FALQEAGAELGPSLLFFGCRNRKMDYIYE 409
F LP + +VP I++GPGTG+APFR F Q+R F +Q G P +L FGCR K+D+IY
Sbjct: 2 FHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYR 61
Query: 410 DELNNFVQSGALSQLIVAFSRE--GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAK 466
+E G +L A+SRE P K + + ++ L +G ++YVCGD
Sbjct: 62 EETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT 121
Query: 467 SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
MA DV + + I+ +QG L A + L+ RY D++
Sbjct: 122 -MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 163
|
| >d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Score = 156 bits (394), Expect = 5e-46
Identities = 63/157 (40%), Positives = 103/157 (65%), Gaps = 4/157 (2%)
Query: 353 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL 412
LPA+ + P+IMIGPGTG+APFR F+Q+R A + G FFG + D++Y+ E
Sbjct: 1 LPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWL----FFGNPHFTEDFLYQVEW 56
Query: 413 NNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDV 472
+V+ G L+++ +A+SR+ K YVQ K+ E+ +++W +++GA++YVCGDA MA+DV
Sbjct: 57 QRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDV 116
Query: 473 HRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
+ L ++ E G +D+ A+ + L++ RY RDV+
Sbjct: 117 EQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153
|
| >d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 129 bits (325), Expect = 4e-36
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 352 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDE 411
+P D IIM+G GTG+APFR FL + F + + F +Y++E
Sbjct: 2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEE 61
Query: 412 LNNFVQSGALSQ-LIVAFSRE----GPTKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDA 465
+ + L A SRE K Y+Q +M + + ++W ML + Y+Y+CG
Sbjct: 62 FEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCG-L 120
Query: 466 KSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
K M + + + ++ +G + L+ ++ +V+
Sbjct: 121 KGMEKGIDDIMVSLAAAEG----IDWIEYKRQLKKAEQWNVEVY 160
|
| >d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Maize (Zea mays), root isoform [TaxId: 4577]
Score = 126 bits (318), Expect = 3e-35
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 356 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 415
D IMI GTG+APFRG+L+ F G F +Y++E ++
Sbjct: 1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY 60
Query: 416 VQSGALS-QLIVAFSREGPT----KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR 470
++ + + A SRE K YVQ K+ E S +I+ +L GA++Y CG M
Sbjct: 61 LKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKG-MMP 119
Query: 471 DVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
+ TL + + +G + + L+ ++ +V+
Sbjct: 120 GIQDTLKKVAERRG----ESWDQKLAQLKKNKQWHVEVY 154
|
| >d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 110 bits (274), Expect = 5e-29
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 15/167 (8%)
Query: 353 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAEL-----GPSLLFFGCRNRKMDYI 407
LP D + +IM+ GTG+ P R +L F E A G S L FG
Sbjct: 1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILY 60
Query: 408 YEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE-----GAYLYVC 462
E+ + +L A SRE + + + ++ ++ + L + + Y+C
Sbjct: 61 KEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYIC 120
Query: 463 GDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509
G M + L ++G K+L+ GR+ + +
Sbjct: 121 GPPP-MEEGIDAALSAAAAKEG----VTWSDYQKDLKKAGRWHVETY 162
|
| >d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Azotobacter vinelandii [TaxId: 354]
Score = 62.7 bits (151), Expect = 2e-12
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 17/145 (11%)
Query: 360 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 419
+ M+ GTGLAPF +Q+ + +L G R + + QS
Sbjct: 9 HLYMLSTGTGLAPFMSLIQDPEVYERF----EKVVLIHGVRQVNELAYQQFITEHLPQSE 64
Query: 420 ALSQLIVA------------FSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS 467
+ + F +G + ++ + + + + + +CG + S
Sbjct: 65 YFGEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICG-SPS 123
Query: 468 MARDVHRTLHTIVQEQGSLDSSKAE 492
M + L + +
Sbjct: 124 MLDESCEVLDGFGLKISPRMGEPGD 148
|
| >d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Nitrate reductase species: Corn (Zea mays) [TaxId: 4577]
Score = 61.9 bits (149), Expect = 4e-12
Identities = 16/137 (11%), Positives = 41/137 (29%), Gaps = 10/137 (7%)
Query: 350 NFKL---PADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDY 406
+F + +A+ + MI G+G+ P +Q L++ + L + R
Sbjct: 2 SFVINGKQRNAR-RLAMICGGSGITPMYQIIQA--VLRDQPEDHTEMHLVYANRTEDDIL 58
Query: 407 IYEDELNNFVQSGALSQLIVAFSREGPTKE----YVQHKMMEKSSDIWNMLSEGAYLYVC 462
+ ++ + ++ + +E V + + C
Sbjct: 59 LRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALAC 118
Query: 463 GDAKSMARDVHRTLHTI 479
G + + L +
Sbjct: 119 GPPPMIQFAISPNLEKM 135
|
| >d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Score = 61.2 bits (147), Expect = 5e-12
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 6/127 (4%)
Query: 351 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYED 410
F L P + GTGLAP +++ + N + + Y D
Sbjct: 1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPN-----ETRIYFGVNTEPELFYID 55
Query: 411 ELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR 470
EL + +S + E Q ++ + +Y+CG M
Sbjct: 56 ELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYLCG-PPGMID 114
Query: 471 DVHRTLH 477
+
Sbjct: 115 AACELVR 121
|
| >d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 58.4 bits (140), Expect = 5e-11
Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 8/128 (6%)
Query: 353 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL 412
+ P+ +I G G P L F N + + DE+
Sbjct: 1 MAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQV----NWFHAAENGDVHA-FADEV 55
Query: 413 NNFVQSGALSQLIVAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMA 469
QS + + K + + S + S+ +
Sbjct: 56 KELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFM 115
Query: 470 RDVHRTLH 477
+ + L
Sbjct: 116 QFTAKQLV 123
|
| >d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Alcaligenes eutrophus [TaxId: 106590]
Score = 58.0 bits (139), Expect = 7e-11
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 9/125 (7%)
Query: 356 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 415
DAK PI++I G GL P L+ A + G RN + + +
Sbjct: 3 DAKTPIVLISGGVGLTPMVSMLKVALQ-----APPRQVVFVHGARNSAVHAMRDRLREAA 57
Query: 416 VQSGALSQLIVAFSREGPTKE---YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDV 472
L + + Y +++ ++L A Y+CG M R
Sbjct: 58 KTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFM-RMQ 116
Query: 473 HRTLH 477
H L
Sbjct: 117 HDALK 121
|
| >d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Score = 55.3 bits (132), Expect = 6e-10
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 7/121 (5%)
Query: 356 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 415
D + P+I+I GTG + R L A +++G R + Y +
Sbjct: 3 DEERPMILIAGGTGFSYARSILLTALARNPN----RDITIYWGGREEQHLYDLCELEALS 58
Query: 416 VQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRT 475
++ L + V E + + D + +Y+ G MA+
Sbjct: 59 LKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTL--AEHDIYIAG-RFEMAKIARDL 115
Query: 476 L 476
Sbjct: 116 F 116
|
| >d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Score = 53.7 bits (128), Expect = 2e-09
Identities = 27/121 (22%), Positives = 39/121 (32%), Gaps = 8/121 (6%)
Query: 356 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 415
D K P++M+ GTG+APF LQ P L FG ++L+
Sbjct: 3 DVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE----HPVRLVFGVTQDCDLV-ALEQLDAL 57
Query: 416 VQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRT 475
Q + + E + D N +Y+CG M V
Sbjct: 58 QQKLPWFEYRTVVAHAESQHERKGYVTGHIEYDWLNG--GEVDVYLCG-PVPMVEAVRSW 114
Query: 476 L 476
L
Sbjct: 115 L 115
|
| >d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 348 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYI 407
+ + + K + MI GTG+ P ++ + L F + K +
Sbjct: 9 KKSNPIIRTVK-SVGMIAGGTGITPMLQVIRAIMKDPDDHTVC---HLLFANQTEKDILL 64
Query: 408 YEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKS-SDIWNMLSEGAYLYVCGDAK 466
+ + A +L R +Y Q + E+ D E + +CG
Sbjct: 65 RPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPP 124
Query: 467 SMARDVHRTLH 477
+ L
Sbjct: 125 MIQYACLPNLD 135
|
| >d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Score = 48.7 bits (115), Expect = 8e-08
Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 18/134 (13%)
Query: 350 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYE 409
F L AK I++ G G+ P ++ A L++ R+ +
Sbjct: 1 EFPLDKRAK-SFILVAGGIGITPMLSMARQLRAEGL-----RSFRLYYLTRDP-EGTAFF 53
Query: 410 DELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMA 469
DEL + + ++ ++Y CG +++
Sbjct: 54 DELTSDEWRSDVKIHHDHGDPTKA----------FDFWSVFEKSKPAQHVYCCG-PQALM 102
Query: 470 RDVHRTLHTIVQEQ 483
V
Sbjct: 103 DTVRDMTGHWPSGT 116
|
| >d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: NADPH-cytochrome p450 reductase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.7 bits (118), Expect = 1e-07
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 15 LFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 54
+ L GA+R+ +GLGDDD +E+DF WRE WP +
Sbjct: 126 VDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAV 165
|
| >d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Maize (Zea mays), root isoform [TaxId: 4577]
Score = 48.8 bits (116), Expect = 2e-07
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 15/101 (14%)
Query: 264 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALV-------YEKTPTG 316
+ PP P R YSI+S+ V E
Sbjct: 64 GQSYGVIPPGENPKKPGAP-QNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKED 122
Query: 317 RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-SNFKLPAD 356
G+CS ++ NS P +K + LP +
Sbjct: 123 PSKNGVCSNFLCNSKPGDK------IQLTGPSGKIMLLPEE 157
|
| >d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: FMN-binding domain of the cytochrome P450bm-3 species: Bacillus megaterium [TaxId: 1404]
Score = 47.8 bits (113), Expect = 3e-07
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 15 LFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 54
+ L GA+ + G D E + WRE +W ++
Sbjct: 107 IDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDV 146
|
| >d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Escherichia coli [TaxId: 562]
Score = 46.2 bits (108), Expect = 1e-06
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 11/123 (8%)
Query: 360 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 419
+ M+ GT + P+ L+ L +L R +
Sbjct: 8 TLWMLATGTAIGPYLSILRLGKDLDRF----KNLVLVHAARYAADLSYLPLMQELEKRYE 63
Query: 420 ALSQLIVAFSREGPTKEYV-----QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVH 473
++ SRE + E S I + E +++ +CG M RD
Sbjct: 64 GKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCG-NPQMVRDTQ 122
Query: 474 RTL 476
+ L
Sbjct: 123 QLL 125
|
| >d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Nitric oxide (NO) synthase FMN domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.1 bits (103), Expect = 1e-05
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 23 GAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDD 63
G +R++ + GD+ E+ F W + V+ ++ DD
Sbjct: 158 GGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDD 198
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 40.5 bits (94), Expect = 8e-05
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 103 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 155
+Y P V + L H++FD+ G L Y G +G+
Sbjct: 6 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPG 58
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Score = 38.6 bits (89), Expect = 4e-04
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 285 QPRYYSISSSPRVAPSRIHVTCALV----YEKTPTGRVHKGLCSTWMKNSLP 332
+ R YSI+S+ V Y+ +G G+CST++ + P
Sbjct: 67 KLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP 118
|
| >d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 40.5 bits (94), Expect = 8e-05
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 283 RLQPRYYSISSSPRVAPS---RIHVTCALVYEKTPTGRVHKGLCSTWMKN 329
+ R YSI+SS + + + G KG+CS ++ +
Sbjct: 71 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCD 120
|
| >d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Sulfite reductase alpha-component CysJ N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 15 LFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 54
S L G +RL+ D + + S WR V L
Sbjct: 105 FDSKLAELGGERLLDRVDADVEY--QAAASEWRARVVDAL 142
|
| >d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Dihydroorotate dehydrogenase B, PyrK subunit domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 37.1 bits (85), Expect = 0.001
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 360 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNF 415
I++IG G G+ P ++ + G + I E+E +N
Sbjct: 10 KILIIGGGIGVPPLYEL------AKQLEKTGCQMTILLGFASEN-VKILENEFSNL 58
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 509 | |||
| d1ja1a1 | 279 | NADPH-cytochrome p450 reductase {Rat (Rattus norve | 100.0 | |
| d1f20a1 | 270 | Neuronal nitric-oxide synthase FAD/NADP+ domain {R | 100.0 | |
| d1ddga1 | 221 | Sulfite reductase flavoprotein {Escherichia coli [ | 100.0 | |
| d1ja1a3 | 160 | NADPH-cytochrome p450 reductase {Rat (Rattus norve | 100.0 | |
| d1f20a2 | 165 | Neuronal nitric-oxide synthase FAD/NADP+ domain {R | 100.0 | |
| d1ddga2 | 153 | Sulfite reductase flavoprotein {Escherichia coli [ | 100.0 | |
| d1fnda2 | 160 | Ferredoxin reductase (flavodoxin reductase) {Spina | 99.96 | |
| d1jb9a2 | 154 | Ferredoxin reductase (flavodoxin reductase) {Maize | 99.96 | |
| d2bmwa2 | 162 | Ferredoxin reductase (flavodoxin reductase) {Cyano | 99.95 | |
| d1tvca2 | 141 | Methane monooxygenase component C, MmoC {Methyloco | 99.89 | |
| d1krha2 | 133 | Benzoate dioxygenase reductase {Acinetobacter sp. | 99.87 | |
| d1qfja2 | 135 | NAD(P)H:flavin oxidoreductase {Escherichia coli [T | 99.83 | |
| d1fdra2 | 148 | Ferredoxin reductase (flavodoxin reductase) {Esche | 99.82 | |
| d1gvha3 | 143 | Flavohemoglobin, C-terminal domain {Escherichia co | 99.81 | |
| d1cqxa3 | 142 | Flavohemoglobin, C-terminal domain {Alcaligenes eu | 99.81 | |
| d1umka2 | 147 | cytochrome b5 reductase {Human (Homo sapiens) [Tax | 99.78 | |
| d2piaa2 | 120 | Phthalate dioxygenase reductase {Pseudomonas cepac | 99.78 | |
| d1jb9a1 | 157 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.76 | |
| d2cnda2 | 146 | Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} | 99.76 | |
| d1a8pa2 | 158 | Ferredoxin reductase (flavodoxin reductase) {Azoto | 99.71 | |
| d1fnda1 | 136 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.61 | |
| d2bmwa1 | 133 | Ferredoxin reductase (flavodoxin reductase) N-term | 99.57 | |
| d1ep3b2 | 160 | Dihydroorotate dehydrogenase B, PyrK subunit {Lact | 99.56 | |
| d1ja1a2 | 177 | NADPH-cytochrome p450 reductase, N-terminal domain | 99.01 | |
| d1bvyf_ | 152 | FMN-binding domain of the cytochrome P450bm-3 {Bac | 98.97 | |
| d1tlla2 | 202 | Nitric oxide (NO) synthase FMN domain {Rat (Rattus | 98.93 | |
| d1ykga1 | 146 | Sulfite reductase alpha-component CysJ N-terminal | 98.72 | |
| d1fdra1 | 99 | Ferredoxin reductase (flavodoxin reductase) N-term | 98.25 | |
| d1qfja1 | 97 | NAD(P)H:flavin oxidoreductase {Escherichia coli [T | 98.16 | |
| d1cqxa2 | 111 | Flavohemoglobin, central domain {Alcaligenes eutro | 98.04 | |
| d1a8pa1 | 99 | Ferredoxin reductase (flavodoxin reductase) N-term | 97.95 | |
| d1f4pa_ | 147 | Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | 97.88 | |
| d2cnda1 | 114 | Nitrate reductase core domain {Corn (Zea mays) [Ta | 97.87 | |
| d1krha1 | 100 | Benzoate dioxygenase reductase {Acinetobacter sp. | 97.85 | |
| d2piaa1 | 103 | Phthalate dioxygenase reductase {Pseudomonas cepac | 97.77 | |
| d1tvca1 | 109 | Methane monooxygenase component C, MmoC {Methyloco | 97.74 | |
| d1gvha2 | 107 | Flavohemoglobin, central domain {Escherichia coli | 97.56 | |
| d1ep3b1 | 101 | Dihydroorotate dehydrogenase B, PyrK subunit {Lact | 97.34 | |
| d1umka1 | 124 | cytochrome b5 reductase {Human (Homo sapiens) [Tax | 97.23 | |
| d1ag9a_ | 175 | Flavodoxin {Escherichia coli [TaxId: 562]} | 96.04 | |
| d1yoba1 | 179 | Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | 94.8 | |
| d1czna_ | 169 | Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI | 94.53 | |
| d1rlja_ | 135 | Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423] | 93.75 | |
| d2fcra_ | 173 | Flavodoxin {Chondrus crispus [TaxId: 2769]} | 91.54 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 83.92 | |
| d1krha1 | 100 | Benzoate dioxygenase reductase {Acinetobacter sp. | 81.3 |
| >d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.1e-51 Score=403.66 Aligned_cols=245 Identities=36% Similarity=0.690 Sum_probs=224.0
Q ss_pred CCCCcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEe
Q 010480 99 NGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLH 178 (509)
Q Consensus 99 ~~~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~ 178 (509)
..+.+|+.++||.|+|++|++|+ ++++|+|+||+||+++++++|+|||+|+|||.|++++|+++|++||+++++.+.+.
T Consensus 32 ~~~~~y~~~nP~~A~v~~n~~L~-~~s~k~~~Hie~dl~~s~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~ 110 (279)
T d1ja1a1 32 NQKPPFDAKNPFLAAVTANRKLN-QGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLN 110 (279)
T ss_dssp SCCSSCBTTBCEEEEEEEEEECC-SSSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEE
T ss_pred cCCCCCCCCCCEEeEEEEEEEeC-CCCCccEEEEEEEcCCCCceecCCCEEEEEeCCCHHHHHHHHHHcCCCCceEEEec
Confidence 34667899999999999999999 57789999999999988999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCC-cccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCc--cCHHHHHHHHHhc
Q 010480 179 TDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASP--AGKDEYAQWIVAS 255 (509)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~-~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~--~~~~~~~~~~~~~ 255 (509)
...+.+ ..+.|+| |+|++++|++|+||+++|++.+|+.||.||+|+.+|++|+.|++. ++.+.|.+|+.+.
T Consensus 111 ~~~~~~------~~~~p~p~~~tl~~lL~~~~Di~~~p~k~~l~~La~~a~~~~~k~~L~~l~~~~~~~~~~y~~~~~~~ 184 (279)
T d1ja1a1 111 NLDEES------NKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEA 184 (279)
T ss_dssp ESCTTC------SCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHGGGCSSSHHHHHHHHHTTTT
T ss_pred cCCCcc------ccccCCCCchhHHHHHHhhccccCCCcHHHHHHHHHHcCChHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 644322 2355788 999999999999999999999999999999999999999999875 4678899999999
Q ss_pred CCCHHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCcc
Q 010480 256 QRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK 335 (509)
Q Consensus 256 ~~~~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~ 335 (509)
+++++|+|++||++++|++.|+++ +|+++||+|||||||..++++++|||++|.+.++.|+.+.|+||+||.++.++++
T Consensus 185 ~~~ildlL~~fps~~~pl~~ll~~-lp~L~PR~YSISSSp~~~p~~v~ltv~vV~y~~~~g~~r~GvcS~~L~~l~~~~~ 263 (279)
T d1ja1a1 185 RRHILAILQDYPSLRPPIDHLCEL-LPRLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGE 263 (279)
T ss_dssp TCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSEEECHHHHHHHHCCCCST
T ss_pred CCCHHHHHhhCcccCCCHHHHHHh-CccCCCceeeEecCcccCCCEEEEEEEEEEeecCCCCcccccchHHHhhcCCCCC
Confidence 999999999999999999999987 5999999999999999999999999999999998899999999999999998886
Q ss_pred CCCCceeeEEEecCCC
Q 010480 336 SNDCSWAPIFVRQSNF 351 (509)
Q Consensus 336 ~~~~~~v~v~~~~g~F 351 (509)
...+..++|+++.++|
T Consensus 264 ~~~~~~vpifir~s~F 279 (279)
T d1ja1a1 264 NGGRALVPMFVRKSQF 279 (279)
T ss_dssp TSSCCEEEEEEECCSC
T ss_pred cCCceEEEEEEcCCCC
Confidence 5555579999998887
|
| >d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.1e-48 Score=378.05 Aligned_cols=236 Identities=32% Similarity=0.585 Sum_probs=202.6
Q ss_pred cCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCC-CCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCC--cEEEEecCC
Q 010480 105 DAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLSPD--TYFSLHTDK 181 (509)
Q Consensus 105 ~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~--~~~~~~~~~ 181 (509)
..++|+.|+|++|++|+.++++|+|+|||||+++ ++++|+|||+|+|+|.|++++|++++++||++++ ..+++....
T Consensus 26 ~~k~~~~a~v~~~~~L~~~~s~r~t~hield~~g~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~~~~~ 105 (270)
T d1f20a1 26 HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLE 105 (270)
T ss_dssp HTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEEE
T ss_pred ccCCcEeeEEEEEEeccCCCCCccEEEEEEEcCCCCCCeEcCCCEEEEEeCCCHHHHHHHHHHhCCCCccCEEEEeeecc
Confidence 4578999999999999999999999999999975 4799999999999999999999999999999874 455554322
Q ss_pred CCCCCCCC--CCC-CCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCC
Q 010480 182 EDGTPLGK--STL-PPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRS 258 (509)
Q Consensus 182 ~~~~~~~~--~~~-~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~ 258 (509)
......+. ... ...++|+|++++|++|+||+++|++.+|+.||+||+|+.||++|.+|++ |.++|.+|+...++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~p~tl~~~l~~~~Di~~~p~~~~l~~La~~~~~~~ek~~L~~l~~--~~~~~~~~~~~~~~t 183 (270)
T d1f20a1 106 ERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPT 183 (270)
T ss_dssp EESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCC
T ss_pred cccccccccccccccCCCCCccHHHHHHhheecccCCCHHHHHHHHHHCCCHHHHHHHHhhcc--cHHHHHHHHhccCCc
Confidence 21111110 111 2233489999999999999999999999999999999999999999984 788999999999999
Q ss_pred HHHHHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCC--CccccCcCchhhhhcCCCccC
Q 010480 259 LLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKS 336 (509)
Q Consensus 259 ~~dvl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~--~~~~~G~~S~~L~~~~~~~~~ 336 (509)
++|||++||++++|++.|+++ +|+++||+|||||||..++++++|||++|.+.++. |+.+.|+||+||.++.+|+
T Consensus 184 lldvL~~fps~~~pl~~ll~~-lp~L~PR~YSIsSSp~~~p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~Gd-- 260 (270)
T d1f20a1 184 MVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD-- 260 (270)
T ss_dssp HHHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC--
T ss_pred HHHHHHhccccCCCHHHHHHh-ccccccceeEEecCccCCCCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCCCC--
Confidence 999999999999999999987 59999999999999999999999999999888765 4578999999999887654
Q ss_pred CCCceeeEEEecC
Q 010480 337 NDCSWAPIFVRQS 349 (509)
Q Consensus 337 ~~~~~v~v~~~~g 349 (509)
.++++++.+
T Consensus 261 ----~v~v~vr~s 269 (270)
T d1f20a1 261 ----VVPCFVRGA 269 (270)
T ss_dssp ----EEEEEEECC
T ss_pred ----EEEEEEecC
Confidence 478888753
|
| >d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: NADPH-cytochrome p450 reductase FAD-binding domain-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-41 Score=318.81 Aligned_cols=217 Identities=24% Similarity=0.402 Sum_probs=182.9
Q ss_pred CcccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCC
Q 010480 102 AVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDK 181 (509)
Q Consensus 102 ~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~ 181 (509)
.+|+..+||.|+|++|++||.++++|+|+||+||+++++++|+|||+|+|+|+|++++|++++++||+++++.+++..
T Consensus 4 ~p~~~~~p~~a~v~~n~~Lt~~~~~~~~~hleldl~~~~~~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~~~~-- 81 (221)
T d1ddga1 4 SPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEG-- 81 (221)
T ss_dssp CCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEETT--
T ss_pred CCCCCCCCEEEEEEeEEEecCCCCCceEEEEEEEcCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCcccccccCC--
Confidence 456788999999999999999999999999999999889999999999999999999999999999999999887741
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHH
Q 010480 182 EDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 261 (509)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~d 261 (509)
.++|++++|++|+||+ .|++.+|+.++.++.++. .+..++ +++.+.+|... .++.|
T Consensus 82 ---------------~~~~l~~~l~~~~di~-~~~~~~l~~~a~~~~~~~---~~~~~~---d~~~~~~~~~~--~~~~~ 137 (221)
T d1ddga1 82 ---------------KTLPLNEALQWHFELT-VNTANIVENYATLTRSET---LLPLVG---DKAKLQHYAAT--TPIVD 137 (221)
T ss_dssp ---------------EEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT---TGGGTT---CTHHHHHHHHH--SCHHH
T ss_pred ---------------CcccHHHHhccccccc-CCcHHHHHHHHHhcCCHH---HhhccC---CHHHHHHHhcc--cchhH
Confidence 1679999999999998 568899999999998753 223333 34556666653 44555
Q ss_pred HHhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCce
Q 010480 262 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 341 (509)
Q Consensus 262 vl~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 341 (509)
|.+||++++|++.||++ +|+++||+|||||||..++++++|||++|.+.+ .++.+.|+||+||.+..+.|+ .
T Consensus 138 -l~~~~~~~~pl~~ll~~-lp~l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~-~~~~r~GvcS~~L~~~l~~g~-----~ 209 (221)
T d1ddga1 138 -MVRFSPAQLDAEALINL-LRPLTPRLYSIASSQAEVENEVHVTVGVVRYDV-EGRARAGGASSFLADRVEEEG-----E 209 (221)
T ss_dssp -HHHHSCCCCCHHHHHHH-SCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEE-TTEEEECHHHHHHHHSCCSSC-----E
T ss_pred -HhhcccCCCCHHHHHHh-hhccCceeeeeccccccCCCeeeEEEEEEEeeC-CCCccceecHHHHHhhCCCCC-----E
Confidence 55799999999999987 599999999999999989999999999998765 477889999999986444443 5
Q ss_pred eeEEEecC-CCC
Q 010480 342 APIFVRQS-NFK 352 (509)
Q Consensus 342 v~v~~~~g-~F~ 352 (509)
|+|+++.+ .|+
T Consensus 210 V~v~ir~s~~FR 221 (221)
T d1ddga1 210 VRVFIEHNDNFR 221 (221)
T ss_dssp EEEEEECCTTSC
T ss_pred EEEEEecCCCCC
Confidence 88999865 474
|
| >d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: NADPH-cytochrome p450 reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.2e-39 Score=289.37 Aligned_cols=158 Identities=48% Similarity=0.902 Sum_probs=146.4
Q ss_pred CCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecC
Q 010480 352 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 431 (509)
Q Consensus 352 ~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~ 431 (509)
+||.++.+|+||||+|||||||+|||+++....+.+...++++||||||+++.|++|++||+.+.+.+.+++++.++||+
T Consensus 1 rlP~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~ 80 (160)
T d1ja1a3 1 RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSRE 80 (160)
T ss_dssp CCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSSSEEEEEETTS
T ss_pred CcCcCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCccccHHHHHHHHHHHHcCCCceeEEEeecc
Confidence 47888899999999999999999999998876655555689999999999876899999999999999999999999999
Q ss_pred CCCcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 432 GPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 432 ~~~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
++++.|||+.+.++.+.+++++ ..+++||||||++.|+++|+++|.+++.+.++++.++|++|+++|+++|||++|||
T Consensus 81 ~~~~~yvq~~~~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l~~~~r~~~dv~ 159 (160)
T d1ja1a3 81 QAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVW 159 (160)
T ss_dssp SSSCCCHHHHHHHTHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccCccccchHHHHHHHHHHHHHhcCCcEEEEeCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEecc
Confidence 8889999999999999999987 56899999997568999999999999999999999999999999999999999999
|
| >d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Neuronal nitric-oxide synthase FAD/NADP+ domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=6.1e-33 Score=250.88 Aligned_cols=159 Identities=38% Similarity=0.732 Sum_probs=138.4
Q ss_pred CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHH-hhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEE
Q 010480 350 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ-EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 428 (509)
Q Consensus 350 ~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~-~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~ 428 (509)
+|+||.++++|+||||+|||||||+|||+++.... ..+....++++|||+|+...+++|.+|++++...+.++++++++
T Consensus 1 sF~Lp~~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 80 (165)
T d1f20a2 1 SFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAY 80 (165)
T ss_dssp TSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 59999999999999999999999999999986543 22344578999999988875789999999999998888899999
Q ss_pred ecCCC-CcccchhhHhhc-HHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeE
Q 010480 429 SREGP-TKEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 505 (509)
Q Consensus 429 Sr~~~-~~~yvq~~i~~~-~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 505 (509)
||+.+ ..+|+++.+... .+.+.+.+ ..+++||+||| ++|+++|+++|.+++.++++++.++|++++++|+++|||+
T Consensus 81 sr~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~yiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~r~~ 159 (165)
T d1f20a2 81 SREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYH 159 (165)
T ss_dssp SSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred eccccCCCCcccchHHHHHHHHHHhhccCCCcEEEEECC-cchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 99744 467888887764 45566655 56899999999 8999999999999999999999999999999999999999
Q ss_pred EeeC
Q 010480 506 RDVW 509 (509)
Q Consensus 506 ~dvw 509 (509)
+|||
T Consensus 160 ~ev~ 163 (165)
T d1f20a2 160 EDIF 163 (165)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 9999
|
| >d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: NADPH-cytochrome p450 reductase-like domain: Sulfite reductase flavoprotein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-32 Score=244.84 Aligned_cols=153 Identities=42% Similarity=0.834 Sum_probs=136.0
Q ss_pred CCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCC
Q 010480 353 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 432 (509)
Q Consensus 353 lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~ 432 (509)
||.++++|+||||||||||||+|||+++..... .+++++|||+|+...+++|.+|++.+.+.+.++++++++|++.
T Consensus 1 LP~d~~~plvlIa~GtGIaP~~s~l~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~ 76 (153)
T d1ddga2 1 LPANPETPVIMIGPGTGIAPFRAFMQQRAADEA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQ 76 (153)
T ss_dssp CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTSS
T ss_pred CCcCCCCCEEEEECchhHHHHHHHHHHHHHhcC----CCceEEeecccCcHHHHHhHHHHHHHHHcCCCceEEEEEEecc
Confidence 577889999999999999999999999886542 3677888887665548999999999999999889999999998
Q ss_pred CCcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 433 PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 433 ~~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
....|+++.+..+...+...+..++++|+|||.+.|+++|+++|.+++.+.++++.++|++++++|+++|||++|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCG~p~~~~~~v~~~L~~~~~~~~~~~~e~a~~~~~~l~~~gR~~~e~~ 153 (153)
T d1ddga2 77 KEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153 (153)
T ss_dssp SSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCcccccchHHHHHHHHHhhhccCCEEEEECCCcchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEecC
Confidence 88899999998887777776677899999998445679999999999999999999999999999999999999999
|
| >d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.96 E-value=4.4e-30 Score=230.40 Aligned_cols=152 Identities=28% Similarity=0.562 Sum_probs=127.8
Q ss_pred CCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc-CeEEEEEe
Q 010480 352 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFS 429 (509)
Q Consensus 352 ~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~-~~~~~a~S 429 (509)
.||.++++|+||||+|||||||+|||++++.+...+ ...++++||||+|+.+ |++|.+||.++.+.+.. +.+.+++|
T Consensus 2 ~LP~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~-d~~y~~e~~~~~~~~~~~~~~~~~~s 80 (160)
T d1fnda2 2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPDNFRLDFAVS 80 (160)
T ss_dssp CCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEEET
T ss_pred CCCCCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHH-HHHHHHHHHHHHHhcCCceeEEEEEc
Confidence 578888999999999999999999999997643221 2236799999999997 99999999999888654 45666777
Q ss_pred cCC----CCcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCe
Q 010480 430 REG----PTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRY 504 (509)
Q Consensus 430 r~~----~~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry 504 (509)
++. ..+.|+++.+......+++.+ ..++.||+||| ++|+++|.++|.+++..++. .|.+|+++|+++|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~l~~~~~~~g~----~a~~~~~~l~~~~ry 155 (160)
T d1fnda2 81 REQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEGI----DWIEYKRQLKKAEQW 155 (160)
T ss_dssp TTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEEC-HHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHTTCE
T ss_pred cchhccCCCcceehhhHHHHHHHHHHhhccCCCEEEEeCC-HHHHHHHHHHHHHHHHhcch----hHHHHHHHHHHcCCe
Confidence 653 357899999988888788766 56789999999 89999999999999987653 578899999999999
Q ss_pred EEeeC
Q 010480 505 LRDVW 509 (509)
Q Consensus 505 ~~dvw 509 (509)
++|||
T Consensus 156 ~~e~~ 160 (160)
T d1fnda2 156 NVEVY 160 (160)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99999
|
| >d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Maize (Zea mays), root isoform [TaxId: 4577]
Probab=99.96 E-value=2.2e-29 Score=224.45 Aligned_cols=148 Identities=31% Similarity=0.548 Sum_probs=122.4
Q ss_pred CCCCCEEEEccCCccchhHHHHHHHHHHHhhc-CCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc-CeEEEEEecCCC
Q 010480 356 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP 433 (509)
Q Consensus 356 ~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~-~~~~~a~Sr~~~ 433 (509)
|+++|+||||+|||||||+|||++++.+.... ...++++||||||+.. |++|.+|+.++.+.+.. +.+..+++++..
T Consensus 1 Dp~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~-d~~y~~e~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
T d1jb9a2 1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEFTSYLKQYPDNFRYDKALSREQK 79 (154)
T ss_dssp CTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHHHHHHHHHCTTTEEEEEEETTTCC
T ss_pred CCCCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccc-hhHHHHHHHHHHHhCCCCEEEEEEeccCCc
Confidence 46789999999999999999999998643221 2236799999999997 99999999999887653 445556665432
Q ss_pred ----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 010480 434 ----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 509 (509)
Q Consensus 434 ----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 509 (509)
.++++++.+....+.+.+.+..++.|||||| +.|+++|.++|.+++.+++. .|++++.+|+++|||++|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~mm~~v~~~L~~~~~~~g~----~~~~~~~~l~~~~r~~~d~w 154 (154)
T d1jb9a2 80 NRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRGE----SWDQKLAQLKKNKQWHVEVY 154 (154)
T ss_dssp ----CCCCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHHTC----CHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCcccccchHHHHhHHHhhhcccCCCEEEEECC-HHHHHHHHHHHHHHHHHcCc----hHHHHHHHHHHCCCEEEecC
Confidence 4678888888877777777778999999999 89999999999999988764 47889999999999999999
|
| >d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Probab=99.95 E-value=8.8e-28 Score=215.44 Aligned_cols=151 Identities=27% Similarity=0.517 Sum_probs=123.6
Q ss_pred CCCCCCCCEEEEccCCccchhHHHHHHHHHHHhh-----cCCCCCeEEEEeccCCCCccccHHHHHHHHHcCC-cCeEEE
Q 010480 353 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-----GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIV 426 (509)
Q Consensus 353 lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~-----~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~-~~~~~~ 426 (509)
||.++++|+||||||||||||+|||++++..... ....++++||||||+.+ |++|.+|+.++..... .+.++.
T Consensus 1 lP~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~-d~~~~~e~~~~~~~~~~~~~~~~ 79 (162)
T d2bmwa2 1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEELEEIQQKYPDNFRLTY 79 (162)
T ss_dssp CCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEE
T ss_pred CCcCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchh-HHHHHHHHHHHHHhcCCceEEEE
Confidence 6888899999999999999999999998754322 12346899999999998 9999999999887755 445666
Q ss_pred EEecCCC----CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 010480 427 AFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMT 501 (509)
Q Consensus 427 a~Sr~~~----~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~ 501 (509)
+.++... .+.++++...+..+.+...+ ..++.||+||| ++|+++|.++|.+++...+.. +.+|+.+|++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~g~~~~~~----~~~~~~~l~~~ 154 (162)
T d2bmwa2 80 AISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEGVT----WSDYQKDLKKA 154 (162)
T ss_dssp EETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHT
T ss_pred EeecccccccCCcchhhhhHHHHHHHHhhhcccCCCEEEEECC-HHHHHHHHHHHHHhhcccCcc----HHHHHHHHHHC
Confidence 6776432 46788888877777666655 46789999999 899999999999999776543 67799999999
Q ss_pred CCeEEeeC
Q 010480 502 GRYLRDVW 509 (509)
Q Consensus 502 ~Ry~~dvw 509 (509)
|||+.|||
T Consensus 155 ~r~~~e~~ 162 (162)
T d2bmwa2 155 GRWHVETY 162 (162)
T ss_dssp TCEEEEEC
T ss_pred CCeEEecC
Confidence 99999999
|
| >d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Probab=99.89 E-value=3.3e-23 Score=181.38 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=99.5
Q ss_pred CCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEec
Q 010480 351 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 430 (509)
Q Consensus 351 F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr 430 (509)
|.|+++..+|+||||||||||||+||++++...+. .++++||||+|+.+ |++|++||++|++....++++.++|+
T Consensus 1 F~l~~~~~~p~vliagGtGItP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~~ 75 (141)
T d1tvca2 1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTA----PNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKACVWH 75 (141)
T ss_dssp CSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTC----CSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEECCSS
T ss_pred CCCCCCCCCcEEEEECchhHHHHHHHHHHHHHcCC----CCceEEEeecccch-hhhhHHHHHHHHhhccccccceeecc
Confidence 78998999999999999999999999999876532 37899999999998 99999999999887777789999988
Q ss_pred CCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 431 EGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 431 ~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
+.. .++++++.+.+. +.. ...+..||+||| ++|+++|.+.|.+.+.
T Consensus 76 ~~~~~~~~~g~~~~~~~~~---~~~-~~~~~~vyiCGp-~~m~~~v~~~l~~~Gv 125 (141)
T d1tvca2 76 PSGDWEGEQGSPIDALRED---LES-SDANPDIYLCGP-PGMIDAACELVRSRGI 125 (141)
T ss_dssp CSSCCSSSSSSSSHHHHHH---HHH-SSSSSEEEEESS-HHHHHHHHHHHHHHCC
T ss_pred cccCcCCccchhHHHHHHh---ccc-ccccceeeccCC-HHHHHHHHHHHHHcCC
Confidence 543 456777766543 111 135789999999 9999999999977643
|
| >d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Probab=99.87 E-value=1.3e-22 Score=175.79 Aligned_cols=115 Identities=26% Similarity=0.350 Sum_probs=95.5
Q ss_pred CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC--
Q 010480 356 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP-- 433 (509)
Q Consensus 356 ~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~-- 433 (509)
+.++|+||||||||||||+||++++...+. ..+++|+||+|+++ |++|.+||++|+++..+++++.++|++..
T Consensus 3 d~~rplv~IAgG~GItP~~s~l~~~~~~~~----~~~i~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~ 77 (133)
T d1krha2 3 DVKRPVLMLAGGTGIAPFLSMLQVLEQKGS----EHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTVVAHAESQH 77 (133)
T ss_dssp CCSSCEEEEEEGGGHHHHHHHHHHHHHHCC----SSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEEETTCCSSS
T ss_pred CCCCCEEEEEccHhHHHHHHHHHHHHHcCC----CCceEEEEeecchh-HHHHHHHHHHHHHhCCceeeeeeeecccccc
Confidence 457899999999999999999999876432 36899999999998 99999999999988877788899998643
Q ss_pred -CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHHHH
Q 010480 434 -TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQ 481 (509)
Q Consensus 434 -~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i~~ 481 (509)
.++|+++.+.+.. .+ ..+..||+||| ++|+++|++.|.+.+.
T Consensus 78 ~~~g~v~~~i~~~~---~~--~~~~~vyiCGp-~~m~~~v~~~L~~~Gv 120 (133)
T d1krha2 78 ERKGYVTGHIEYDW---LN--GGEVDVYLCGP-VPMVEAVRSWLDTQGI 120 (133)
T ss_dssp SEESCSGGGCCGGG---GG--GGCSEEEEEEE-HHHHHHHHHHHHHHTC
T ss_pred cccchhHHHHHHhh---cc--cccceEEEECC-HHHHHHHHHHHHHcCC
Confidence 3578888776531 11 35789999999 9999999999988753
|
| >d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=8.8e-21 Score=164.35 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=89.3
Q ss_pred CCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCC-
Q 010480 355 ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP- 433 (509)
Q Consensus 355 ~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~- 433 (509)
++..+|+||||+|||||||+||+++++.... .++++|+||+|+.+ |++|.+++.++......+.+..+.++...
T Consensus 2 ed~~rplv~IagGtGiaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 76 (135)
T d1qfja2 2 DDEERPMILIAGGTGFSYARSILLTALARNP----NRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVVEQPEAG 76 (135)
T ss_dssp SCSSSCEEEEEETTCHHHHHHHHHHHHHHCT----TCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEESSCCTT
T ss_pred CCCCCCEEEEECceeHHHHHHHHHHHHHccc----ccceeEEEecccHh-HHHHHHHHHHHHHhcCccceeeeecccCcc
Confidence 3567999999999999999999999886432 37899999999998 99999999999988777667777776533
Q ss_pred ---CcccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHH
Q 010480 434 ---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLH 477 (509)
Q Consensus 434 ---~~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~ 477 (509)
..+|+++.+.+. .. ..+..+|+||| +.|++++.+.|.
T Consensus 77 ~~~~~g~~~~~~~~~------~~~~~~~~~yvCGp-~~m~~~~~~~L~ 117 (135)
T d1qfja2 77 WRGRTGTVLTAVLQD------HGTLAEHDIYIAGR-FEMAKIARDLFC 117 (135)
T ss_dssp CCSEESCHHHHHHHH------CSCCTTCEEEEESC-HHHHHHHHHHHH
T ss_pred cccccCchHHHHHHh------ccCcccCceEeeCC-HHHHHHHHHHHH
Confidence 356777665442 11 25789999999 999999998874
|
| >d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=8.9e-21 Score=166.90 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=85.0
Q ss_pred CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeE-EEEEecCCCC--
Q 010480 358 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL-IVAFSREGPT-- 434 (509)
Q Consensus 358 ~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~-~~a~Sr~~~~-- 434 (509)
.+++||||+|||||||+||++++...+ ..++++||||+|+.+ |++|.++++++.+....+.. ..+.+++...
T Consensus 6 ~k~lvlIa~GtGiaP~~s~l~~~~~~~----~~~~v~l~~g~r~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T d1fdra2 6 CETLWMLATGTAIGPYLSILRLGKDLD----RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLRIQTVVSRETAAGS 80 (148)
T ss_dssp CSEEEEEEEGGGGHHHHHHHHHCCSCT----TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEEEEEEESSSCCTTE
T ss_pred CCEEEEEEcCeEHHHHHHHHHHHHHhC----CCCcEEEEEecCcHH-HHHHHHHhhhHHHhccccccccccccCcccccc
Confidence 578999999999999999999976533 247899999999998 99999999999887654444 4455555432
Q ss_pred -cccchhhHhhcHHHHHHHH-----hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 435 -KEYVQHKMMEKSSDIWNML-----SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 435 -~~yvq~~i~~~~~~v~~~l-----~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
.+++++.+... .+.+.+ ..++.|||||| ++|+++|.+.|.+..
T Consensus 81 ~~~~~~~~~~~~--~l~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~e~~ 129 (148)
T d1fdra2 81 LTGRIPALIESG--ELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKETR 129 (148)
T ss_dssp EESCHHHHHHTS--HHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred ccccccchHHHH--HHHHhhccccccccceEEEECC-HHHHHHHHHHHHHhc
Confidence 23444444432 112221 34677999999 999999999998753
|
| >d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.1e-20 Score=165.28 Aligned_cols=119 Identities=15% Similarity=0.211 Sum_probs=89.4
Q ss_pred CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCC-
Q 010480 356 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT- 434 (509)
Q Consensus 356 ~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~- 434 (509)
..++|+||||+|||||||+||+++++.... .++++||||+|+.+ |++|.+++.++.++...++++.+++++...
T Consensus 4 ~~d~plv~IagGtGiaP~~s~l~~l~~~~~----~~~i~l~~~~r~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T d1gvha3 4 ADDTPVTLISAGVGQTPMLAMLDTLAKAGH----TAQVNWFHAAENGD-VHAFADEVKELGQSLPRFTAHTWYRQPSEAD 78 (143)
T ss_dssp CTTCCEEEEEEGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEEEEEESSCCHHH
T ss_pred CCCCCEEEEEchhhHHHHHHHHHHHHHcCC----CceEEEEeecCCHH-HHHHHHHHHHHHHhCCceEEEEEEeccCccc
Confidence 346899999999999999999999886532 37899999999998 999999999999988777888888876431
Q ss_pred --cccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 435 --KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 435 --~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
..+++.......+.+.+.. ..+..+|+||| +.|+++|.+.|.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iCGp-~~m~~~v~~~L~~~G 126 (143)
T d1gvha3 79 RAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGP-VGFMQFTAKQLVDLG 126 (143)
T ss_dssp HHHTCCSEESSCCGGGSSSCCCCTTCEEEEESC-HHHHHHHHHHHHHTT
T ss_pred ccccceeeeccccHHHHHhcccccCcEEEEeCc-HHHHHHHHHHHHHcC
Confidence 1122222111111111112 35789999999 999999999988754
|
| >d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Flavohemoglobin, C-terminal domain domain: Flavohemoglobin, C-terminal domain species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.81 E-value=2.1e-20 Score=163.29 Aligned_cols=117 Identities=24% Similarity=0.391 Sum_probs=88.4
Q ss_pred CCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecCCCC-
Q 010480 356 DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT- 434 (509)
Q Consensus 356 ~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~~~~- 434 (509)
+..+|+||||+|||||||+||+++++.. ...+++|+||+|+++ |++|.+++.++.+....++++.+++++...
T Consensus 3 d~~~plvliagGtGIaP~~sil~~~~~~-----~~~~i~li~~~r~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (142)
T d1cqxa3 3 DAKTPIVLISGGVGLTPMVSMLKVALQA-----PPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDLFVFYDQPLPED 76 (142)
T ss_dssp TCCSCEEEEESSCCHHHHHHHHHHHTCS-----SCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEEEEEESSCCTTC
T ss_pred CCCCCEEEEEcceeHHHHHHHHHHHHHc-----CCCcEEEEeeccChh-hhhhHHHHHHHHHhCCCeEEEEEEcccCCcc
Confidence 5678999999999999999999886532 137899999999998 999999999999888877899999986431
Q ss_pred ---cccchhhHhhcHHHHHHHH-hCCCEEEEecCCcchHHHHHHHHHHHH
Q 010480 435 ---KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 480 (509)
Q Consensus 435 ---~~yvq~~i~~~~~~v~~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~ 480 (509)
..+...... ....+.+.+ ..++.|||||| ++|++++.+.|.+.+
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 124 (142)
T d1cqxa3 77 VQGRDYDYPGLV-DVKQIEKSILLPDADYYICGP-IPFMRMQHDALKNLG 124 (142)
T ss_dssp CBTTTBSEESSC-CGGGSHHHHCCTTCEEEEESS-HHHHHHHHHHHHHTT
T ss_pred cccccccchhhh-HHHHHHhhcccCCceEEEECC-hhHHHHHHHHHHHcC
Confidence 111111111 111222222 45789999999 999999999997754
|
| >d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=7e-20 Score=161.06 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=89.5
Q ss_pred CCCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcC-CcCeEEEE
Q 010480 349 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLIVA 427 (509)
Q Consensus 349 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~-~~~~~~~a 427 (509)
+.+....+..++++|||||||||||+||+++++.+. ...++++|+||+|+.+ |++|++||+++++.+ ..++++.+
T Consensus 9 ~~~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~~~---~~~~~i~L~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 84 (147)
T d1umka2 9 KKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP---DDHTVCHLLFANQTEK-DILLRPELEELRNKHSARFKLWYT 84 (147)
T ss_dssp TTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCT---TCCCEEEEEEEESSGG-GCTTHHHHHHHHHHCTTTEEEEEE
T ss_pred CCCCcccccCCeEEEEECCeecchHHHHHHHHHhcC---CCCceEEEEEEeCccc-cchhHHHHhhhhhhcCcceEEEEE
Confidence 333333344688999999999999999999987532 2336799999999998 999999999998764 45677777
Q ss_pred EecCCC----CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHH-HHHHHHHHHH
Q 010480 428 FSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHTIVQ 481 (509)
Q Consensus 428 ~Sr~~~----~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~-v~~~L~~i~~ 481 (509)
.++... .+++++..+... .......+..+|+||| +.|++. +++.|.+++.
T Consensus 85 ~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~vyiCGP-~~m~~~~~~~~L~~~G~ 139 (147)
T d1umka2 85 LDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHVGH 139 (147)
T ss_dssp ESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHHTC
T ss_pred ecccccCcccceeehHHHHHHH---hcCCCcCCcEEEEeCC-HHHHHHHHHHHHHHcCC
Confidence 777543 244554433221 1111135789999999 899975 6788877643
|
| >d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Aromatic dioxygenase reductase-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Probab=99.78 E-value=6.5e-20 Score=155.41 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEe
Q 010480 350 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 429 (509)
Q Consensus 350 ~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~S 429 (509)
+|.++. ..+|+||||||||||||+||++++.... ..+++|+||+|+++ |++|.++|+++.....+ ...++
T Consensus 1 dF~l~~-~~~~~v~IagGtGiaP~~s~~~~l~~~~-----~~~~~l~~~~r~~~-~~~~~~~l~~~~~~~~~---~~~~~ 70 (120)
T d2piaa2 1 EFPLDK-RAKSFILVAGGIGITPMLSMARQLRAEG-----LRSFRLYYLTRDPE-GTAFFDELTSDEWRSDV---KIHHD 70 (120)
T ss_dssp CSCCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHHC-----SSEEEEEEEESCGG-GCTTHHHHHSTTTTTTE---EEEEC
T ss_pred CCCCCC-CCCCEEEEEecccHHHHHHHHHHHHHhc-----CCCeEEEEeeCCHH-HhhhhHHHHHHhhCCCe---EEeee
Confidence 488875 5789999999999999999999986542 25799999999998 99999999998765433 33333
Q ss_pred cCCC-CcccchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHH
Q 010480 430 REGP-TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 477 (509)
Q Consensus 430 r~~~-~~~yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~ 477 (509)
.... ....+...+.. ..++.++|+||| ++|+++|++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~--------~~~~~~~y~CGp-~~mi~~v~~~~~ 110 (120)
T d2piaa2 71 HGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTG 110 (120)
T ss_dssp TTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTT
T ss_pred cCCCcccccHHHHhcc--------CCCcCEEEEeCC-HHHHHHHHHHHc
Confidence 3222 22222222211 245789999999 899999998764
|
| >d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Maize (Zea mays), root isoform [TaxId: 4577]
Probab=99.76 E-value=1e-18 Score=153.68 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=101.7
Q ss_pred cccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCC
Q 010480 103 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 182 (509)
Q Consensus 103 ~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 182 (509)
.|+.++||.|+|+.|++|+..++.+.++||+|++++ ++.|+|||.|+|+|+|.+.
T Consensus 22 ~y~~~nP~~a~v~~n~~Lt~~~s~k~t~hie~dl~~-~~~y~~Gq~lgI~p~~~~~------------------------ 76 (157)
T d1jb9a1 22 TYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP------------------------ 76 (157)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSSBCT------------------------
T ss_pred cCCCCCCeEEEEEeEEEcccCCCCceEEEEEecCCC-CccEecCceEEEEcCCccc------------------------
Confidence 366789999999999999999999999999999975 8999999999999966210
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 010480 183 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262 (509)
Q Consensus 183 ~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dv 262 (509)
T Consensus 77 -------------------------------------------------------------------------------- 76 (157)
T d1jb9a1 77 -------------------------------------------------------------------------------- 76 (157)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCCC---eEEEEEEEEEeeCC----CCccccCcCchhhhhcCCCcc
Q 010480 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAPS---RIHVTCALVYEKTP----TGRVHKGLCSTWMKNSLPMEK 335 (509)
Q Consensus 263 l~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~---~l~ltv~~v~~~~~----~~~~~~G~~S~~L~~~~~~~~ 335 (509)
+.. +.++++|.|||||+|..+++ .++++|+.+.+.++ .++.+.|+||+||+++.+|+
T Consensus 77 --------------~~~-~~p~~~R~YSIaSSp~~~~~~~~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~Gd- 140 (157)
T d1jb9a1 77 --------------KKP-GAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGD- 140 (157)
T ss_dssp --------------TST-TCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCTTC-
T ss_pred --------------ccc-CccCCcCEEEecCCCcCCCCCCCEEEEEEEEeeccccccccCCcccCceeehhhccCCCcC-
Confidence 000 14678999999999986544 56777776644333 46789999999999987765
Q ss_pred CCCCceeeEEEecCC-CCCCCC
Q 010480 336 SNDCSWAPIFVRQSN-FKLPAD 356 (509)
Q Consensus 336 ~~~~~~v~v~~~~g~-F~lp~~ 356 (509)
.|.|+++.|. |.||+|
T Consensus 141 -----~V~i~gp~g~~F~lPed 157 (157)
T d1jb9a1 141 -----KIQLTGPSGKIMLLPEE 157 (157)
T ss_dssp -----EEEEEEEECSTTCCCCS
T ss_pred -----EEEEEecCCCcccCCCC
Confidence 3789999875 888864
|
| >d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Nitrate reductase species: Corn (Zea mays) [TaxId: 4577]
Probab=99.76 E-value=1.5e-19 Score=158.12 Aligned_cols=126 Identities=16% Similarity=0.264 Sum_probs=84.1
Q ss_pred CCCCCCCC--CCCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcC-eEE
Q 010480 349 SNFKLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS-QLI 425 (509)
Q Consensus 349 g~F~lp~~--~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~-~~~ 425 (509)
|.|.++.. ..+++||||+|||||||+||+++++.... ...++++|+||+|+.+ +.+|.+++..+.+..... ..+
T Consensus 1 G~f~l~~~~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~--~~~~~v~l~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T d2cnda2 1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRWAAEYPDRLKVW 77 (146)
T ss_dssp SCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHHHHHCTTTEEEE
T ss_pred CeEEeCCCCCCCCEEEEEeceEEHhHHHHHHHHHHHhCC--ccCceEEEEEeecccc-cchhHHHHhhHHHhCCCceeEE
Confidence 56777533 35799999999999999999999876431 2346899999999998 999999999998875543 233
Q ss_pred EEEecCCC---CcccchhhHhhcHHHHHHHH---hCCCEEEEecCCcchHHH-HHHHHHHHH
Q 010480 426 VAFSREGP---TKEYVQHKMMEKSSDIWNML---SEGAYLYVCGDAKSMARD-VHRTLHTIV 480 (509)
Q Consensus 426 ~a~Sr~~~---~~~yvq~~i~~~~~~v~~~l---~~~~~iyvCGp~~~M~~~-v~~~L~~i~ 480 (509)
...+.... ...+..+++.. +.+.+.+ ..++.||+||| ++|++. |++.|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~~vyiCGp-~~m~~~av~~~L~~~G 136 (146)
T d2cnda2 78 YVIDQVKRPEEGWKYSVGFVTE--AVLREHVPEGGDDTLALACGP-PPMIQFAISPNLEKMK 136 (146)
T ss_dssp EEESCCSCGGGCCCSEESSCCH--HHHHHHSCCCSSSEEEEEECC-HHHHHTTTHHHHHTTT
T ss_pred EeeccccCcccccccccCccch--HHHHHhcccCCCCcEEEEECC-HHHHHHHHHHHHHHcC
Confidence 33332211 11111121211 1112222 24678999999 899985 677777653
|
| >d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Reductases domain: Ferredoxin reductase (flavodoxin reductase) species: Azotobacter vinelandii [TaxId: 354]
Probab=99.71 E-value=3e-18 Score=151.98 Aligned_cols=123 Identities=19% Similarity=0.287 Sum_probs=86.0
Q ss_pred CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCc--------CeEEEEEe
Q 010480 358 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL--------SQLIVAFS 429 (509)
Q Consensus 358 ~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~--------~~~~~a~S 429 (509)
.+++||||+|||||||+||+++++..+.. ++++++||+|+.+ |.+|.++|..+...... +++....+
T Consensus 7 ~~~lvlIagGtGIaP~~sil~~~~~~~~~----~~~~l~~g~r~~~-~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (158)
T d1a8pa2 7 GKHLYMLSTGTGLAPFMSLIQDPEVYERF----EKVVLIHGVRQVN-ELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVT 81 (158)
T ss_dssp CSEEEEEEEGGGGHHHHHHTTCHHHHHHC----SEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEES
T ss_pred CCCEEEEEchhhHHHHHHHHHHHHHhCCC----CceeeeeccccHH-HHhhHHHHHHHHhhhhhhhhccccceEEEEecc
Confidence 57899999999999999999998765432 7899999999998 99999999887665431 23445555
Q ss_pred cCCC-CcccchhhHhhcH--HHHH-HHH-hCCCEEEEecCCcchHHHHHHHHHHHHHHcCCC
Q 010480 430 REGP-TKEYVQHKMMEKS--SDIW-NML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 486 (509)
Q Consensus 430 r~~~-~~~yvq~~i~~~~--~~v~-~~l-~~~~~iyvCGp~~~M~~~v~~~L~~i~~~~~~~ 486 (509)
+... ..+.......... +.+. ..+ ..+++||+||| ++|+++|.++|.+.+.+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCGp-~~m~~~v~~~L~~~G~~~~~~ 142 (158)
T d1a8pa2 82 RESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGS-PSMLDESCEVLDGFGLKISPR 142 (158)
T ss_dssp SSCCSSBSCHHHHHHSSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCSS
T ss_pred cccccccccccchhccchhhhhhhccccCcccceEEEECC-HHHHHHHHHHHHHcCCCccCC
Confidence 5433 2222222221110 0000 001 35789999999 999999999999988666543
|
| >d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.61 E-value=9.2e-16 Score=131.79 Aligned_cols=120 Identities=17% Similarity=0.273 Sum_probs=97.9
Q ss_pred cccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCC
Q 010480 103 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 182 (509)
Q Consensus 103 ~~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 182 (509)
.|+.++|+.++|+.+++|+..++...++||++++. ..+.|+||++|+|.|+|..+.
T Consensus 13 ~y~p~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~-~~~~y~pGQ~v~v~~p~~~~~----------------------- 68 (136)
T d1fnda1 13 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHE-GEIPYREGQSVGVIPDGEDKN----------------------- 68 (136)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSSBCTT-----------------------
T ss_pred eecCCCCeEEEEEeEEEccCCCCCceEEEEecccC-CCCcccCCCEEEEECCCcccc-----------------------
Confidence 36667899999999999999999999999999986 479999999999998642200
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 010480 183 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 262 (509)
Q Consensus 183 ~~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dv 262 (509)
.
T Consensus 69 ---------------~---------------------------------------------------------------- 69 (136)
T d1fnda1 69 ---------------G---------------------------------------------------------------- 69 (136)
T ss_dssp ---------------S----------------------------------------------------------------
T ss_pred ---------------c----------------------------------------------------------------
Confidence 0
Q ss_pred HhhCCCCCCChhhhHHhhcCCCCCccccccCCCCCC---CCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCC
Q 010480 263 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVA---PSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 339 (509)
Q Consensus 263 l~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~---~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~ 339 (509)
.++.+|.|||||+|... .+.++++|+.+.+.+..++.+.|+||+||+++.+|+.
T Consensus 70 -------------------~~~~~R~YSIaSsP~~~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~GD~---- 126 (136)
T d1fnda1 70 -------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAE---- 126 (136)
T ss_dssp -------------------SBCCCEEEECCSCTTCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCE----
T ss_pred -------------------ccceeEEeecccCCcCCCCCCcEEEEEEEEeecccCCCcCCCceEehhhccCCCcCE----
Confidence 23567999999999753 3579999998888777788889999999999877653
Q ss_pred ceeeEEEecCC
Q 010480 340 SWAPIFVRQSN 350 (509)
Q Consensus 340 ~~v~v~~~~g~ 350 (509)
+.|.+|.|.
T Consensus 127 --V~v~GP~Gk 135 (136)
T d1fnda1 127 --VKLTGPVGK 135 (136)
T ss_dssp --EEEEEEECS
T ss_pred --EEEeCCCCC
Confidence 778888763
|
| >d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]
Probab=99.57 E-value=7.6e-15 Score=125.91 Aligned_cols=123 Identities=23% Similarity=0.353 Sum_probs=98.3
Q ss_pred ccCCCCeeEEEeeeeccCCCCCCCcEEEEEEEeCCCCCccCCCCeeEEcccCCHHHHHHHHHHhCCCCCcEEEEecCCCC
Q 010480 104 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKED 183 (509)
Q Consensus 104 ~~~~~~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 183 (509)
++.++|+.|+|+++++|+.+++...++||+|++++..+.|.|||+++|+|+|... .
T Consensus 7 ~~~~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~~~~~~y~pGQ~v~v~~p~~~~------------------------~ 62 (133)
T d2bmwa1 7 YRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK------------------------N 62 (133)
T ss_dssp BBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCT------------------------T
T ss_pred cCCCCCeEEEEEEEEEccCCCCCceEEEEEEccCCccCCccCCCEEEEEeccccc------------------------c
Confidence 4457899999999999999999999999999998878999999999999996420 0
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 010480 184 GTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 263 (509)
Q Consensus 184 ~~~~~~~~~~~~~~~~t~~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~e~~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl 263 (509)
+
T Consensus 63 ~------------------------------------------------------------------------------- 63 (133)
T d2bmwa1 63 G------------------------------------------------------------------------------- 63 (133)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhCCCCCCChhhhHHhhcCCCCCccccccCCCCCCC---CeEEEEEEEEEee-CCCCccccCcCchhhhhcCCCccCCCC
Q 010480 264 SEFPSAKPPLGVFFAAIVPRLQPRYYSISSSPRVAP---SRIHVTCALVYEK-TPTGRVHKGLCSTWMKNSLPMEKSNDC 339 (509)
Q Consensus 264 ~~fps~~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~---~~l~ltv~~v~~~-~~~~~~~~G~~S~~L~~~~~~~~~~~~ 339 (509)
....+|.|||||+|...+ +.++++|+.+... ...+..+.|+||+||+++++|++
T Consensus 64 ------------------~~~~~R~YSias~p~~~~~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~GD~---- 121 (133)
T d2bmwa1 64 ------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE---- 121 (133)
T ss_dssp ------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCE----
T ss_pred ------------------cccceeeeeecCCCcCCCCCccEEEEEEEeccccccccCCCCCcEehhhHhhCCCCCE----
Confidence 113389999999997533 4689999876433 33456778999999999887654
Q ss_pred ceeeEEEecCCCCC
Q 010480 340 SWAPIFVRQSNFKL 353 (509)
Q Consensus 340 ~~v~v~~~~g~F~l 353 (509)
+.|.+|.|.|.|
T Consensus 122 --v~v~GP~G~~fL 133 (133)
T d2bmwa1 122 --VKITGPVGKEML 133 (133)
T ss_dssp --EEEEEEECSSSC
T ss_pred --EEEeCCccceeC
Confidence 789999999875
|
| >d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ferredoxin reductase-like, C-terminal NADP-linked domain superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain family: Dihydroorotate dehydrogenase B, PyrK subunit domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.56 E-value=9.3e-16 Score=136.23 Aligned_cols=103 Identities=24% Similarity=0.311 Sum_probs=75.7
Q ss_pred CCCEEEEccCCccchhHHHHHHHHHHHhhcCCCCCeEEEEeccCCCCccccHHHHHHHHHcCCcCeEEEEEecC-CCCcc
Q 010480 358 KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE-GPTKE 436 (509)
Q Consensus 358 ~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~el~~~~~~~~~~~~~~a~Sr~-~~~~~ 436 (509)
..++||||||||||||+||++++.+.. .+++++||+|+++ |.+|.+||+++... .++...... ...++
T Consensus 8 ~~kvllIAgG~GitPl~sm~~~l~~~~------~~v~l~~g~r~~~-~~~~~~el~~~~~~----~~~~~~~~~~~~~~g 76 (160)
T d1ep3b2 8 TDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLKIATDDGSYGTKG 76 (160)
T ss_dssp TSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEEEEETTCSSSEES
T ss_pred CCEEEEEEeeeeHHHHHHHHHHHHhcc------CceEEEEecCCHH-HHHHHHHHHHhhCC----CccccccCccccccc
Confidence 457999999999999999999876432 6899999999998 99999999887532 233333222 22345
Q ss_pred cchhhHhhcHHHHHHHHhCCCEEEEecCCcchHHHHHHHHHHH
Q 010480 437 YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 479 (509)
Q Consensus 437 yvq~~i~~~~~~v~~~l~~~~~iyvCGp~~~M~~~v~~~L~~i 479 (509)
++.+.+... ......+|+||| .+|+++|.+.+.+.
T Consensus 77 ~v~~~~~~~-------~~~~~~vy~CGP-~~m~~~v~~~~~~~ 111 (160)
T d1ep3b2 77 HVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAKKYDQL 111 (160)
T ss_dssp CHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHHHTTTC
T ss_pred cHHHHHHhh-------ccccceeeeecc-chHHHHHHHHHHhc
Confidence 665543321 235789999999 89999998877654
|
| >d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: NADPH-cytochrome p450 reductase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=7.2e-11 Score=105.47 Aligned_cols=55 Identities=36% Similarity=0.666 Sum_probs=52.4
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCC
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRD 60 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~ 60 (509)
.+||+|| |+||++|++|||++++|+|+||++.+.|++|++|++++|++|++.++.
T Consensus 117 ~~Fc~a~--~~l~~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~~~~~ 171 (177)
T d1ja1a2 117 EHFNAMG--KYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGV 171 (177)
T ss_dssp SSTTHHH--HHHHHHHHHTTCEESSCCEEEETTTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH--HHHHHHHHHcCCcEEEcceeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 5799999 899999999999999999999999999999999999999999999864
|
| >d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: FMN-binding domain of the cytochrome P450bm-3 species: Bacillus megaterium [TaxId: 1404]
Probab=98.97 E-value=8e-11 Score=102.72 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=50.5
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhC
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLR 59 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~ 59 (509)
+||.|| |++|++|++|||+|++|+|++|+..+.|++|+.|.++||++|++.++
T Consensus 99 ~fc~~~--~~ld~~l~~lGA~~i~~~~~~D~~~~~e~~~~~W~~~l~~~L~~~~~ 151 (152)
T d1bvyf_ 99 TYQKVP--AFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFN 151 (152)
T ss_dssp GTTHHH--HHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhhHH--HHHHHHHHHcCCeEeECceeecCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 699999 99999999999999999999999999999999999999999998774
|
| >d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Nitric oxide (NO) synthase FMN domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=2.3e-10 Score=104.63 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=53.4
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHhhhCCCC
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDD 62 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~~~~~~~ 62 (509)
.+||.+| |++|++|++|||+|++|+|++|++.+.|++|++|+++||++|++.++..+
T Consensus 141 ~~Fc~~a--k~ld~~l~~LGA~ri~~~g~~D~~~~~e~~~~~W~~~l~~~l~~~~~~~~ 197 (202)
T d1tlla2 141 PHFCAFG--HAVDTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGD 197 (202)
T ss_dssp SSTTHHH--HHHHHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHhhhH--HHHHHHHHhCCCcccccchhccCCCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5799999 99999999999999999999999999999999999999999999987543
|
| >d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Cytochrome p450 reductase N-terminal domain-like domain: Sulfite reductase alpha-component CysJ N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=2.1e-09 Score=92.67 Aligned_cols=49 Identities=27% Similarity=0.229 Sum_probs=45.6
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHh
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 56 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~ 56 (509)
-+||.|| |++|++|++|||+|++|+|++|+ +.|++|++|++++|++|+.
T Consensus 96 ~~Fc~~~--~~l~~~l~~lGa~~i~~~~~~D~--~~e~~~~~W~~~~~~~L~~ 144 (146)
T d1ykga1 96 EFFCQSG--KDFDSKLAELGGERLLDRVDADV--EYQAAASEWRARVVDALKS 144 (146)
T ss_dssp SSTTHHH--HHHHHHHHHHTCEESSCCEEECT--TCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHHHHHHCCCcEeeCceecCC--CCHHHHHHHHHHHHHHHHh
Confidence 4799999 99999999999999999999996 5789999999999999974
|
| >d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=1.7e-07 Score=74.90 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=50.0
Q ss_pred CCCCCChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceee
Q 010480 267 PSAKPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAP 343 (509)
Q Consensus 267 ps~~~~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~ 343 (509)
|.....+|||+.+.+|.. ..|+|||+|+|. .+.++++|+.+ ..|.+|+||+++.+|+. +.
T Consensus 26 p~~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~--~~~~~~~vk~~---------~~G~~S~~l~~lk~GD~------v~ 88 (99)
T d1fdra1 26 PVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPD--NPDLEFYLVTV---------PDGKLSPRLAALKPGDE------VQ 88 (99)
T ss_dssp CCCCCCTTCEEEEEECC---CEEEEEECCSCTT--CSSEEEEEECC---------TTCSSHHHHHTCCTTCE------EE
T ss_pred CCCCCCCCcEEEeccCCCCCcEEEEEccCCCCC--CceeEEEEEEe---------cCcHHHHHHhhCCCCCE------EE
Confidence 444567899997655532 469999999987 36788888643 46999999998776543 67
Q ss_pred EEEe-cCCCCC
Q 010480 344 IFVR-QSNFKL 353 (509)
Q Consensus 344 v~~~-~g~F~l 353 (509)
|..| +|.|.|
T Consensus 89 v~gP~~g~F~L 99 (99)
T d1fdra1 89 VVSEAAGFFVL 99 (99)
T ss_dssp EESSCBCCCSG
T ss_pred ECcCCCCEEEC
Confidence 7764 456654
|
| >d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: NAD(P)H:flavin oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=3.2e-07 Score=72.96 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=50.6
Q ss_pred CCChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEecC
Q 010480 270 KPPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 349 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~g 349 (509)
...+||++.+.+|....|+|||||+|.. ++.++|+|+.. ..|.+|+||.+....|+ .+.|..|.|
T Consensus 29 ~f~~GQ~v~l~~~~~~~r~ySias~p~~-~~~l~l~ir~~---------~~g~~s~~l~~~l~~G~-----~v~v~gP~G 93 (97)
T d1qfja1 29 SFRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGAS---------EINLYAKAVMDRILKDH-----QIVVDIPHG 93 (97)
T ss_dssp CCCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHHS-----EEEEEEEEC
T ss_pred ccCCCCEEEEEEcCCCcEEEEEEEcCCC-CcEEEEEEeEc---------cCCchhHhHhhcCCCCC-----EEEEeccCC
Confidence 3457999988888889999999999974 57899988754 45889999976433333 478889999
Q ss_pred CCCC
Q 010480 350 NFKL 353 (509)
Q Consensus 350 ~F~l 353 (509)
.|.|
T Consensus 94 ~~~l 97 (97)
T d1qfja1 94 EAWL 97 (97)
T ss_dssp SCCC
T ss_pred ceEC
Confidence 8765
|
| >d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Flavohemoglobin, central domain species: Alcaligenes eutrophus [TaxId: 106590]
Probab=98.04 E-value=4.5e-07 Score=73.89 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=51.6
Q ss_pred CCChhhhHHhhcCC-----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+||++.+.++. ...|+|||+|+|. .+.++|+|+.+ ..++...|.+|+||++ +.+|+ .+.
T Consensus 34 ~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~--~~~~~~~v~~~----~~~~~~~G~~S~~l~~~l~~Gd------~v~ 101 (111)
T d1cqxa2 34 NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVK 101 (111)
T ss_dssp CCCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEE
T ss_pred CCCCCCEEEEEeecCCCcceeeeeccccCCcc--CCCeEEEEEEe----cCCCcccchhHHHHHhcCCCCC------EEE
Confidence 34689998765442 2479999999986 46788888643 2234456999999986 55544 377
Q ss_pred EEEecCCCCC
Q 010480 344 IFVRQSNFKL 353 (509)
Q Consensus 344 v~~~~g~F~l 353 (509)
+..|.|.|.|
T Consensus 102 v~gP~G~F~L 111 (111)
T d1cqxa2 102 LAAPYGSFHI 111 (111)
T ss_dssp ECCCBCSCSC
T ss_pred EEccCeEeEC
Confidence 8888899986
|
| >d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain species: Azotobacter vinelandii [TaxId: 354]
Probab=97.95 E-value=1.4e-06 Score=69.32 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=46.2
Q ss_pred CCChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEE-
Q 010480 270 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF- 345 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~- 345 (509)
..-+|||+.+-+|.. ..|+|||||+|. .+.+.++++.+ ..|.+|+||+++.+|+. +.|.
T Consensus 30 ~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~--~~~~~~~i~~~---------~~G~~S~~L~~l~~Gd~------v~v~~ 92 (99)
T d1a8pa1 30 RFENGQFVMIGLEVDGRPLMRAYSIASPNY--EEHLEFFSIKV---------QNGPLTSRLQHLKEGDE------LMVSR 92 (99)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSEEEEEEECC---------SSCSSHHHHTTCCTTCE------EEEES
T ss_pred ccCCCcEEEEeccCCCceeEeeccccCCCC--CCcEEEEEEEe---------CCCChhHHHHhCCCCCE------EEECC
Confidence 456899997655533 349999999997 36788776532 46999999998877653 5554
Q ss_pred EecCCC
Q 010480 346 VRQSNF 351 (509)
Q Consensus 346 ~~~g~F 351 (509)
.|.|.|
T Consensus 93 gP~G~l 98 (99)
T d1a8pa1 93 KPTGTL 98 (99)
T ss_dssp CCBCSC
T ss_pred CCceeE
Confidence 466765
|
| >d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Desulfovibrio vulgaris [TaxId: 881]
Probab=97.88 E-value=1.5e-06 Score=74.42 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=44.0
Q ss_pred cccccCCcchhHHHHHhhcCCeecccCcccCCC-CCchhhHHHHHHHHHHHH
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 54 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~-~~~e~~f~~W~~~l~~~l 54 (509)
-+||+|+ |+|+++|+++||+++.|++..|.+ .+.+++|.+|.++||.+|
T Consensus 98 ~~f~~a~--~~l~~~l~~lGa~~v~~~~~~d~~~~~~~~~~~~W~~~l~~al 147 (147)
T d1f4pa_ 98 EYFCGAV--DAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147 (147)
T ss_dssp SSTTHHH--HHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHTTC
T ss_pred HHHhHHH--HHHHHHHHhCCCEEeeCCEEEecCCccchHHHHHHHHHHHHhC
Confidence 3699999 999999999999999999999865 578899999999999874
|
| >d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Nitrate reductase core domain species: Corn (Zea mays) [TaxId: 4577]
Probab=97.87 E-value=1.6e-06 Score=70.78 Aligned_cols=78 Identities=9% Similarity=0.050 Sum_probs=55.9
Q ss_pred CCChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
..++||++.+.++.. ..|+||++|+|.. ++.++|+|+............+|.+|.||+++.+|+. +.|..
T Consensus 32 ~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~-~~~~~~~ik~~~~~~~~~~~~gG~~s~~l~~l~~Gd~------v~i~g 104 (114)
T d2cnda1 32 GLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSY------IDVKG 104 (114)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCTTCE------EEEEE
T ss_pred CccceEEEEEEeecccceEEeeeccCCCCCC-CCEEEEEEEeccCCCccccccCchhHHHHhhCCCCCE------EEEEC
Confidence 356899886543322 3799999999984 6899998875422211233457999999998877653 78899
Q ss_pred ecCCCCCC
Q 010480 347 RQSNFKLP 354 (509)
Q Consensus 347 ~~g~F~lp 354 (509)
|.|.|.+.
T Consensus 105 P~G~F~y~ 112 (114)
T d2cnda1 105 PLGHVEYT 112 (114)
T ss_dssp EECSEECC
T ss_pred CceeeEEC
Confidence 99999864
|
| >d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Probab=97.85 E-value=4.5e-06 Score=66.32 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
...+|||+.+-+|. -..|+|||+|+|. ++.++++|+.+ ..|.+|+||++....|+ .+.|..|.
T Consensus 33 ~f~pGQ~v~l~i~g~~~~r~ys~~~~~~--~~~~~~~i~~~---------~~G~~s~~l~~~l~~Gd-----~v~v~gP~ 96 (100)
T d1krha1 33 HFLAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRNV---------PQGKMSEYLSVQAKAGD-----KMSFTGPF 96 (100)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEECC---------TTCHHHHHHHTTCCTTC-----EEEEEEEE
T ss_pred CCCCCEEEEEEECCcceeEEeeccCCCc--cCceEEEEEEe---------eCCchhhhhhccCCCCC-----EEEEeccc
Confidence 34599999877775 3579999999986 46788877533 45999999986443333 47888898
Q ss_pred CCCC
Q 010480 349 SNFK 352 (509)
Q Consensus 349 g~F~ 352 (509)
|+|.
T Consensus 97 G~Ff 100 (100)
T d1krha1 97 GSFY 100 (100)
T ss_dssp CSCS
T ss_pred cccC
Confidence 9884
|
| >d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Phthalate dioxygenase reductase species: Pseudomonas cepacia, db01 [TaxId: 292]
Probab=97.77 E-value=4.7e-06 Score=66.68 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=41.9
Q ss_pred CChhhhHHhhcCCCCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCc-CchhhhhcCCCcc
Q 010480 271 PPLGVFFAAIVPRLQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGL-CSTWMKNSLPMEK 335 (509)
Q Consensus 271 ~~~~~~l~~~~p~~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~-~S~~L~~~~~~~~ 335 (509)
..+||++.+.+|.-..|+|||+|+|.. ++.++|+|+.+ ..|. +|+||++....|+
T Consensus 39 f~pGQ~v~v~~~~~~~R~YSl~s~p~~-~~~~~i~Vk~~---------~~g~~~S~~l~~~l~~Gd 94 (103)
T d2piaa1 39 FEAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKRD---------SNGRGGSISFIDDTSEGD 94 (103)
T ss_dssp CCTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEECC---------TTSCSHHHHHHHSCCTTC
T ss_pred CCCCceEEEEEecceeEEEEEecCCCC-CCEEEEEEEEE---------CCCccchHHHHhcCCCCC
Confidence 458999998888778899999999974 58899988643 4566 4999985444343
|
| >d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Methane monooxygenase component C, MmoC species: Methylococcus capsulatus [TaxId: 414]
Probab=97.74 E-value=7.7e-06 Score=66.08 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=47.5
Q ss_pred CCChhhhHHhhcCC-CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceeeEEEe
Q 010480 270 KPPLGVFFAAIVPR-LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVR 347 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~v~~~ 347 (509)
...+|||+.+-+|. -.+|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.|..|
T Consensus 43 ~f~pGQ~v~l~~~g~~~~R~ySias~p~~-~~~~~~~i~~~---------~~G~~S~~l~~~l~~Gd------~v~i~gP 106 (109)
T d1tvca1 43 KFEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRVL---------PEGRFSDYLRNDARVGQ------VLSVKGP 106 (109)
T ss_dssp SCCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECCC---------TTSSSHHHHHHHSSSSS------EEEEEEE
T ss_pred cCCCCcEEEEEECCccccccceeccCCcC-CceeEEEEEEe---------CCchHHHHHHhhCCCCC------EEEEeCC
Confidence 44689999765665 35899999999974 57899888643 46999999976 55543 3677777
Q ss_pred cC
Q 010480 348 QS 349 (509)
Q Consensus 348 ~g 349 (509)
.|
T Consensus 107 ~G 108 (109)
T d1tvca1 107 LG 108 (109)
T ss_dssp EC
T ss_pred cc
Confidence 65
|
| >d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Flavohemoglobin, central domain species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=2.3e-05 Score=62.89 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=48.4
Q ss_pred CCChhhhHHhhcCC-----CCCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhh-cCCCccCCCCceee
Q 010480 270 KPPLGVFFAAIVPR-----LQPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAP 343 (509)
Q Consensus 270 ~~~~~~~l~~~~p~-----~~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~-~~~~~~~~~~~~v~ 343 (509)
...+||++.+-++. ...|+|||||.|. .+.++|+|+.+ ..|.+|+||++ +.+|+ .+.
T Consensus 36 ~~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~--~~~~~i~vk~~---------~~G~~S~~l~~~l~~Gd------~v~ 98 (107)
T d1gvha2 36 EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKRE---------EGGQVSNWLHNHANVGD------VVK 98 (107)
T ss_dssp CCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECC---------TTCHHHHHHHHTCCTTC------EEE
T ss_pred CCCCCCEEEEEeeccccCceEEeeccccCCCC--CCceEEEEEEc---------CCcchhHHHHhcCCCCC------EEE
Confidence 34689998654442 2359999999986 47888888642 56899999985 55554 478
Q ss_pred EEEecCCCC
Q 010480 344 IFVRQSNFK 352 (509)
Q Consensus 344 v~~~~g~F~ 352 (509)
|..|.|.|.
T Consensus 99 v~gP~G~Ff 107 (107)
T d1gvha2 99 LVAPAGDFF 107 (107)
T ss_dssp EEEEECSCC
T ss_pred EeCccccCC
Confidence 889999884
|
| >d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Dihydroorotate dehydrogenase B, PyrK subunit species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=97.34 E-value=3e-05 Score=61.42 Aligned_cols=64 Identities=16% Similarity=0.008 Sum_probs=47.2
Q ss_pred ChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEEec
Q 010480 272 PLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 348 (509)
Q Consensus 272 ~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~~~ 348 (509)
-+|||+.+.+|.. ..|+|||+|++.. .+.++|.+++. ..|..|.||+++.+|+ .+.|..|.
T Consensus 34 ~pGQfv~l~~~~~~~~~~R~~Si~~~~~~-~~~i~~~i~~~---------~~g~~t~~l~~l~~Gd------~v~v~GP~ 97 (101)
T d1ep3b1 34 LPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIG---------DETTGTYKLSKLESGA------KVDVMGPL 97 (101)
T ss_dssp STTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECC---------CTTSHHHHHHTCCTTC------EEEEEEEE
T ss_pred CCCceEEEEccCCccEeeccceeeeCCCC-CcEEEEEEeec---------CcchhhHHHHhCCCCC------EEEEeccc
Confidence 4799997655543 3599999999864 57888877543 3478899999887765 36788887
Q ss_pred CCC
Q 010480 349 SNF 351 (509)
Q Consensus 349 g~F 351 (509)
|++
T Consensus 98 G~~ 100 (101)
T d1ep3b1 98 GNG 100 (101)
T ss_dssp SBC
T ss_pred CCC
Confidence 753
|
| >d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: cytochrome b5 reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=4.2e-05 Score=62.95 Aligned_cols=77 Identities=12% Similarity=0.017 Sum_probs=51.9
Q ss_pred CCChhhhHHhhcCCC---CCccccccCCCCCCCCeEEEEEEEEEeeCCCCccccCcCchhhhhcCCCccCCCCceeeEEE
Q 010480 270 KPPLGVFFAAIVPRL---QPRYYSISSSPRVAPSRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 346 (509)
Q Consensus 270 ~~~~~~~l~~~~p~~---~pR~YSIaSsp~~~~~~l~ltv~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~v~v~~ 346 (509)
..++||++.+.++.- ..|+||++|+|.. ++.++++|++...........+|..|.||+++.+|+. +.|..
T Consensus 42 ~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~-~g~~~~~vk~~~~~~~~~~~~Gg~~s~~l~~l~~GD~------v~v~g 114 (124)
T d1umka1 42 GLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDT------IEFRG 114 (124)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTCE------EEEEE
T ss_pred ccceeeEEEEEecccceeEEEeeccCCcccC-CceEEEEEEecccccccccCCCcchHHHHhcCCCCCE------EEEEC
Confidence 456888875433322 3599999999974 6899999875421111112345777888888777653 78889
Q ss_pred ecCCCCC
Q 010480 347 RQSNFKL 353 (509)
Q Consensus 347 ~~g~F~l 353 (509)
|.|.|..
T Consensus 115 P~G~F~y 121 (124)
T d1umka1 115 PSGLLVY 121 (124)
T ss_dssp EECSEEE
T ss_pred CeeeeEE
Confidence 9999864
|
| >d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0017 Score=56.46 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=36.1
Q ss_pred ccccCCcchhHHHHHhhcCCeecccC--------------------ccc-CCCCC---chhhHHHHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPV--------------------GLG-DDDQC---IEDDFSAWRELVWPELD 55 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~--------------------g~g-Dd~~~---~e~~f~~W~~~l~~~l~ 55 (509)
+||.|+ ++|+++|+++||+++... |++ |+++. .+.-++.|.++|++.|.
T Consensus 96 ~F~~a~--~~l~~~l~~~Ga~~iG~~~~~gy~f~~s~a~~~~~~~~gL~~D~dn~~~~t~~ri~~W~~~l~~e~~ 168 (175)
T d1ag9a_ 96 YFCDAL--GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp STTHHH--HHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH--HHHHHHHHhcCCEEecccCCCCcccccchhhccCCeeeeeeeccccchhHHHHHHHHHHHHHHHHhC
Confidence 699999 999999999999999552 222 22221 33457899999998874
|
| >d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Azotobacter vinelandii [TaxId: 354]
Probab=94.80 E-value=0.01 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.7
Q ss_pred cccccCCcchhHHHHHhhcCCeeccc
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVP 29 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~ 29 (509)
.+||.|+ +.|+++|+++||+++-.
T Consensus 104 ~~Fc~a~--~~l~~~l~~~GA~~iG~ 127 (179)
T d1yoba1 104 ENYLDAL--GELYSFFKDRGAKIVGS 127 (179)
T ss_dssp TTTTHHH--HHHHHHHHTTTCEEECC
T ss_pred hhHHHHH--HHHHHHHHhCCCeEeec
Confidence 5699999 89999999999999954
|
| >d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Synechococcus elongatus PCC 7942 [TaxId: 1140]
Probab=94.53 E-value=0.013 Score=50.15 Aligned_cols=25 Identities=16% Similarity=-0.033 Sum_probs=22.8
Q ss_pred cccccCCcchhHHHHHhhcCCeecccC
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVPV 30 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~~ 30 (509)
-+||.|+ |+|+++|+++||+++.+.
T Consensus 96 ~~F~~a~--~~l~~~l~~~Ga~~ig~~ 120 (169)
T d1czna_ 96 DNFQDAM--GILEEKISSLGSQTVGYW 120 (169)
T ss_dssp TSTTHHH--HHHHHHHHHTTCEECCCE
T ss_pred hhhhhHH--HHHHHHHHhCCCceecCc
Confidence 4799999 999999999999999774
|
| >d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavoprotein NrdI domain: Flavoprotein NrdI species: Bacillus subtilis [TaxId: 1423]
Probab=93.75 E-value=0.0088 Score=49.29 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=32.0
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHHHHHh
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 56 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~~l~~ 56 (509)
+||+|| |+|+++|....+.++--.| +++ + .+.|..|.+++|..+..
T Consensus 88 ~Fc~a~--~~i~~~~~~~~~~~~E~~g--~~~-D-~e~~~~~v~~~~~~~~~ 133 (135)
T d1rlja_ 88 NFAKSA--DTISRQYQVPILHKFELSG--TSK-D-VELFTQEVERVVTKSSA 133 (135)
T ss_dssp GTTHHH--HHHHHHHTCCEEEEEETTC--CHH-H-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHH--HHHHHHhCCCceEeeecCC--CHH-H-HHHHHHHHHHHHHHHHc
Confidence 699999 9999998655555543333 221 2 35688999999988754
|
| >d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Chondrus crispus [TaxId: 2769]
Probab=91.54 E-value=0.05 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=21.6
Q ss_pred cccccCCcchhHHHHHhhcCCeeccc
Q 010480 4 FGFLSAGINESLFSLLPFAGAKRLVP 29 (509)
Q Consensus 4 ~~f~~a~~~k~ld~rL~~LGA~r~~~ 29 (509)
.+||.|+ ++|+++|+++||++|-.
T Consensus 100 ~~F~~a~--~~l~~~l~~~GA~~IG~ 123 (173)
T d2fcra_ 100 DNFCDAI--EEIHDCFAKQGAKPVGF 123 (173)
T ss_dssp TSTTTHH--HHHHHHHHHTTCEEECC
T ss_pred hhHHHHH--HHHHHHHHhCCCEEecc
Confidence 5799999 99999999999999843
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.92 E-value=0.46 Score=38.67 Aligned_cols=45 Identities=16% Similarity=-0.060 Sum_probs=28.4
Q ss_pred ccccCCcchhHHHHHhhcCCeecccCcccCCCCCchhhHHHHHHHHHH
Q 010480 5 GFLSAGINESLFSLLPFAGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 52 (509)
Q Consensus 5 ~f~~a~~~k~ld~rL~~LGA~r~~~~g~gDd~~~~e~~f~~W~~~l~~ 52 (509)
.||.|+ +.++++|.++|++.+.+........+ |..++.|.+.+-+
T Consensus 101 ~~~~a~--~~~~~~l~~~G~~~v~~~~~~~~~~d-e~~~~e~~~~~~k 145 (148)
T d1vmea1 101 WAPSAE--RTAGELLKETKFRILSFTEIKGSNMD-ERKIEEAISLLKK 145 (148)
T ss_dssp CCCCC---CCHHHHHHTSSCEEEEEEEECSTTCC-THHHHHHHHHHHH
T ss_pred CccchH--HHHHHHHHHcCCcEEeeEEEeCCCCC-HHHHHHHHHHHHH
Confidence 489988 88999999999998876532221111 4445555554433
|
| >d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Riboflavin synthase domain-like family: Ferredoxin reductase FAD-binding domain-like domain: Benzoate dioxygenase reductase species: Acinetobacter sp. [TaxId: 472]
Probab=81.30 E-value=1.4 Score=32.94 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=33.5
Q ss_pred CeeEEEeeeeccCCCCCCCcEEEEEEEeCCC--CCccCCCCeeEEccc
Q 010480 109 PCRSNVAVRKELHTPSSDRSCTHLEFDIAGT--GLTYETGDHVGVYCE 154 (509)
Q Consensus 109 ~~~a~v~~~~~L~~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~ 154 (509)
.+.|+|+..++|+. ++.+++|++++. ...|+||.++.|.-+
T Consensus 3 ~~~~~v~~v~~lt~-----~v~~~~l~~~~~~~~~~f~pGQ~v~l~i~ 45 (100)
T d1krha1 3 HFEGTLARVENLSD-----STITFDIQLDDGQPDIHFLAGQYVNVTLP 45 (100)
T ss_dssp EEEEEEEEEEESSS-----SEEEEEEEECTTCCCCCCCTTCEEEEECT
T ss_pred EEEEEEEEEEEcCC-----CeEEEEEEcCCCCcCCCCCCCEEEEEEEC
Confidence 36789999999985 689999998753 478999999998643
|