Citrus Sinensis ID: 010494
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 509 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C667 | 611 | Chaperonin 60 subunit bet | yes | no | 0.944 | 0.787 | 0.773 | 0.0 | |
| P08927 | 595 | RuBisCO large subunit-bin | N/A | no | 0.980 | 0.838 | 0.683 | 0.0 | |
| P21241 | 588 | RuBisCO large subunit-bin | N/A | no | 0.964 | 0.835 | 0.663 | 0.0 | |
| Q9LJE4 | 596 | Chaperonin 60 subunit bet | no | no | 0.937 | 0.800 | 0.677 | 0.0 | |
| P21240 | 600 | Chaperonin 60 subunit bet | no | no | 0.960 | 0.815 | 0.659 | 0.0 | |
| C0Z361 | 597 | Chaperonin 60 subunit bet | no | no | 0.921 | 0.785 | 0.675 | 0.0 | |
| Q43831 | 499 | RuBisCO large subunit-bin | N/A | no | 0.848 | 0.865 | 0.675 | 1e-170 | |
| Q2JKV7 | 539 | 60 kDa chaperonin 2 OS=Sy | yes | no | 0.919 | 0.868 | 0.516 | 1e-137 | |
| Q2JXD4 | 542 | 60 kDa chaperonin 1 OS=Sy | yes | no | 0.919 | 0.863 | 0.512 | 1e-136 | |
| Q119S1 | 561 | 60 kDa chaperonin 1 OS=Tr | yes | no | 0.921 | 0.836 | 0.511 | 1e-134 |
| >sp|Q9C667|CPNB4_ARATH Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana GN=CPN60B4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/481 (77%), Positives = 429/481 (89%)
Query: 28 RAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVL 87
RA KEV+FN DGS TKKLQAG D+VA+L+GVTLGPKGRNVVLQNKYGPP+IVNDGETVL
Sbjct: 37 RAAAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVL 96
Query: 88 KEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIA 147
KEIELEDPLEN+GVKLVRQAGA+TNDLAGDG TTSIILA GLI EG+KVI+AG NP+Q+A
Sbjct: 97 KEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVA 156
Query: 148 RGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIE 207
RGIEKT+KAL+ ELK SRE+EDHELA VAAVSAGNDY VG MIS+A QQVGR GVVTIE
Sbjct: 157 RGIEKTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIE 216
Query: 208 KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILD 267
KGK N+LEIVEGM+F+RG+LSPYFVTDR+KR EFHD KLLLVDKKI NPKDMFKILD
Sbjct: 217 KGKYLVNNLEIVEGMQFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILD 276
Query: 268 SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGG 327
SAVKE++P++IVAEDIEQ ALA +IRNKL+G LK AAIKAPAFGERKSH LDD+AI TG
Sbjct: 277 SAVKEEFPVLIVAEDIEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGA 336
Query: 328 LVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEE 387
VIRDEMGL+L+KAGKEVLGTA +V++TKDSTLIVT+G T+ AV++R+S+I++L E TEE
Sbjct: 337 TVIRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTEE 396
Query: 388 RFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCS 447
FQK ILNER+ARLSGGIAI+QVGA T VELKDKQL++EDALNATK+AIEEGIVVGGGC+
Sbjct: 397 NFQKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGCA 456
Query: 448 LLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCII 507
LLRL+ KV+ IKE LDN EQKIGAEIFK+ALSYP +LIAKNA NGN V+++V ++K +
Sbjct: 457 LLRLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEKVLSNKNTM 516
Query: 508 F 508
+
Sbjct: 517 Y 517
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Involved specifically in the folding of NDHH, a subunit of the chloroplast NADH dehydrogenase-like complex (NDH). Arabidopsis thaliana (taxid: 3702) |
| >sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2 | Back alignment and function description |
|---|
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/502 (68%), Positives = 420/502 (83%), Gaps = 3/502 (0%)
Query: 2 AALSTPIFAISFKNPT---LPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVG 58
AA+S+ A +N LP++ N AM KE++FN DGSA KKLQ GV+ +A+LVG
Sbjct: 18 AAISSFPLAAGKRNANKVVLPRKNRNVKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVG 77
Query: 59 VTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDG 118
VTLGPKGRNVVL++KYG PKIVNDG TV KE+ELEDP+ENIG KLVRQA A+TNDLAGDG
Sbjct: 78 VTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDG 137
Query: 119 CTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAA 178
TTS++LAQGLIAEGVKV+AAG NPV I RGIEKTSKAL++ELK S+EVED ELADVAA
Sbjct: 138 TTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEVEDSELADVAA 197
Query: 179 VSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQ 238
VSAGN++ VG MI++AL +VGR GVVT+E+GK ENSL +VEGM+FDRG++SPYFVTD +
Sbjct: 198 VSAGNNHEVGNMIAEALSKVGRKGVVTLEEGKSAENSLYVVEGMQFDRGYISPYFVTDSE 257
Query: 239 KRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRG 298
K TVEF + KLLLVDKKI N +D+ IL+ A++ +PIVI+AEDIEQ+ALA L+ NKLRG
Sbjct: 258 KMTVEFENCKLLLVDKKITNARDLINILEDAIRSGFPIVIIAEDIEQEALATLVVNKLRG 317
Query: 299 VLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDS 358
LK AA+KAP FGERKS YLDDIAILTGG VIR+E+GLTLDKA KEVLG A KVV+TKD+
Sbjct: 318 SLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLTLDKADKEVLGNAAKVVLTKDT 377
Query: 359 TLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVEL 418
T IV DGST+ AV KR+S+I++ E E+ ++K L+ERIA+LSGG+A++QVGAQT EL
Sbjct: 378 TTIVGDGSTQEAVNKRVSQIKNQIEAAEQEYEKEKLSERIAKLSGGVAVIQVGAQTETEL 437
Query: 419 KDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL 478
K+K+LR+EDALNATKAA+EEGIVVGGGC+LLRL++KV+ IK+ L N+E+K+GA+I KRAL
Sbjct: 438 KEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLANDEEKVGADIVKRAL 497
Query: 479 SYPTKLIAKNAGVNGNFVVDQV 500
SYP KLIAKNAGVNG+ V ++V
Sbjct: 498 SYPLKLIAKNAGVNGSVVSEKV 519
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This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Pisum sativum (taxid: 3888) |
| >sp|P21241|RUBB_BRANA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/493 (66%), Positives = 416/493 (84%), Gaps = 2/493 (0%)
Query: 16 PTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYG 75
P L + +P V A KE++FN DG+ +KLQAGV+ +A+LVGVTLGPKGRNVVL++KYG
Sbjct: 43 PKLRRSSPAVVCAA--KELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYG 100
Query: 76 PPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVK 135
P+IVNDG TV +E+ELEDP+ENIG KLVRQA A+TNDLAGDG TTS++LAQG IAEGVK
Sbjct: 101 SPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVK 160
Query: 136 VIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDAL 195
V+AAG NPV I RGIEKT+KAL++ELK S+EVED ELADVAAVSAGN+ +G MI++A+
Sbjct: 161 VVAAGANPVLITRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAM 220
Query: 196 QQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK 255
+VGR GVVT+E+GK EN+L +VEGM+FDRG++SPYFVTD +K +VEF + KLLLVDKK
Sbjct: 221 SRVGRKGVVTLEEGKSAENALYVVEGMQFDRGYVSPYFVTDSEKMSVEFDNCKLLLVDKK 280
Query: 256 IKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315
I N +D+ +L+ A++ YPI+I+AEDIEQ+ALA L+ NKLRG LK AA+KAP FGERKS
Sbjct: 281 ITNARDLVGVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKS 340
Query: 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRI 375
YLDDIAILTG VIR+E+GL+LDKAGKEVLG A KVV+TK+++ IV DGST+ AV+KR+
Sbjct: 341 QYLDDIAILTGATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRV 400
Query: 376 SEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAA 435
++I++L E E+ ++K LNERIA+LSGG+A++QVGAQT ELK+K+LR+EDALNATKAA
Sbjct: 401 TQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA 460
Query: 436 IEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNF 495
+EEGIVVGGGC+LLRL++KV+ IK LDN+E+K+GA+I KRALSYP KLIAKNAGVNG+
Sbjct: 461 VEEGIVVGGGCTLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSV 520
Query: 496 VVDQVSAHKCIIF 508
V ++V ++ + F
Sbjct: 521 VSEKVLSNDNVKF 533
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This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Brassica napus (taxid: 3708) |
| >sp|Q9LJE4|CPNB2_ARATH Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/477 (67%), Positives = 408/477 (85%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
KE++FN DG+ +KLQ GV+ +A+LVGVTLGPKGRNVVL++KYG P+IVNDG TV +E+E
Sbjct: 53 KELHFNKDGTTIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVE 112
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LEDP+ENIG KLVRQA A+TNDLAGDG TTS++LAQG IAEGVKV+AAG NPV I RGIE
Sbjct: 113 LEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIE 172
Query: 152 KTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKC 211
KT+KAL++ELKL S+EVED ELADVAAVSAGN++ VG MI++A+ +VGR GVVT+E+GK
Sbjct: 173 KTAKALVNELKLMSKEVEDSELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLEEGKS 232
Query: 212 TENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVK 271
EN+L +VEGM+FDRG++SPYFVTD +K +VE+ + KLLLVDKK+ N +D+ +L+ A++
Sbjct: 233 AENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKVTNARDLVGVLEDAIR 292
Query: 272 EKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIR 331
YPI+I+AEDIEQ+ALA L+ NKLRG LK AA+KAP FGERKS YLDDIAILTG VIR
Sbjct: 293 GGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGATVIR 352
Query: 332 DEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQK 391
+E+GL+LDKAGKEVLG A KVV+TK+ T IV DG+T+ AV KR+ +IR+L E E+ ++K
Sbjct: 353 EEVGLSLDKAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAEQDYEK 412
Query: 392 NILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRL 451
LNERIA+LSGG+A++QVGAQT ELK+K+LR+EDALNATKAA+EEGIVVGGGC+LLRL
Sbjct: 413 EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRL 472
Query: 452 SAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCIIF 508
++KV+ IK+ L+N+E+K+GAEI KRALSYP KLIAKNAGVNG+ V ++V A+ + F
Sbjct: 473 ASKVDAIKDTLENDEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEKVLANDNVKF 529
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Involved in protein assisted folding. Arabidopsis thaliana (taxid: 3702) |
| >sp|P21240|CPNB1_ARATH Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60B1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/490 (65%), Positives = 417/490 (85%), Gaps = 1/490 (0%)
Query: 19 PKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPK 78
P+R+ +++ A KE++FN DG+ ++LQAGV+ +A+LVGVTLGPKGRNVVL++KYG P+
Sbjct: 45 PRRSSSAIVCA-AKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPR 103
Query: 79 IVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIA 138
IVNDG TV +E+ELEDP+ENIG KLVRQA A+TNDLAGDG TTS++LAQG IAEGVKV+A
Sbjct: 104 IVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVA 163
Query: 139 AGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQV 198
AG NPV I RGIEKT+KAL++ELK S+EVED ELADVAAVSAGN+ +G MI++A+ +V
Sbjct: 164 AGANPVLITRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKV 223
Query: 199 GRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN 258
GR GVVT+E+GK EN+L +VEGM+FDRG++SPYFVTD +K +VEF + KLLLVDKKI N
Sbjct: 224 GRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITN 283
Query: 259 PKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL 318
+D+ +L+ A++ YPI+I+AEDIEQ+ALA L+ NKLRG LK AA++AP FGERKS YL
Sbjct: 284 ARDLVGVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYL 343
Query: 319 DDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEI 378
DDIAILTG VIR+E+GL+LDKAGKEVLG A KVV+TK+++ IV DGST+ AV+KR+++I
Sbjct: 344 DDIAILTGATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQI 403
Query: 379 RSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438
++L E E+ ++K LNERIA+LSGG+A++QVGAQT ELK+K+LR+EDALNATKAA+EE
Sbjct: 404 KNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 463
Query: 439 GIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVD 498
GIVVGGGC+LLRL++KV+ IK LDN+E+K+GA+I KRALSYP KLIAKNAGVNG+ V +
Sbjct: 464 GIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSE 523
Query: 499 QVSAHKCIIF 508
+V ++ + F
Sbjct: 524 KVLSNDNVKF 533
|
Binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Involved in protein assisted folding. Required for proper plastid division. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0Z361|CPNB3_ARATH Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana GN=CPN60B3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/469 (67%), Positives = 397/469 (84%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
K+++FN DG+A KKLQAGV+ +A+LVGVTLGPKGRNVVL++KYG P+IVNDG TV +E+E
Sbjct: 53 KQLHFNKDGTAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVE 112
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LEDP+ENIG KLVRQA ++TNDLAGDG TTS++LAQGLIAEGVKV+AAG NPV I RGIE
Sbjct: 113 LEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIE 172
Query: 152 KTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKC 211
KT+KAL++ELK S+EVED ELADVAAVSAGN+Y VG MI++A+ +VGR GVVT+E+GK
Sbjct: 173 KTTKALVAELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMAKVGRKGVVTLEEGKS 232
Query: 212 TENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVK 271
ENSL +VEGM+FDRG++SPYFVTD +K E+ + KL LVDKKI N +D+ IL+ A+K
Sbjct: 233 AENSLYVVEGMQFDRGYISPYFVTDSEKMCAEYENCKLFLVDKKITNARDIISILEDAIK 292
Query: 272 EKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIR 331
YP++I+AEDIEQ+ LA L+ NKLRG +K AA+KAP FGERKS YLDDIA LTG VIR
Sbjct: 293 GGYPLLIIAEDIEQEPLATLVVNKLRGTIKVAALKAPGFGERKSQYLDDIAALTGATVIR 352
Query: 332 DEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQK 391
+E+GL L+K G EVLG A KVV+TKD+T IV DGST V+KR+ +I++L E E+ ++K
Sbjct: 353 EEVGLQLEKVGPEVLGNAGKVVLTKDTTTIVGDGSTEEVVKKRVEQIKNLIEAAEQDYEK 412
Query: 392 NILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRL 451
LNERIA+LSGG+A++QVGAQT ELK+K+LR+EDALNATKAA+EEGIVVGGGC+LLRL
Sbjct: 413 EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRL 472
Query: 452 SAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
++KV+ IKE L N+E+K+GA+I K+ALSYP KLIAKNAGVNG+ V ++V
Sbjct: 473 ASKVDAIKETLANDEEKVGADIVKKALSYPLKLIAKNAGVNGSVVSEKV 521
|
Involved in protein assisted folding. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q43831|RUBB_SECCE RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 598 bits (1541), Expect = e-170, Method: Compositional matrix adjust.
Identities = 292/432 (67%), Positives = 367/432 (84%)
Query: 77 PKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKV 136
P+IVNDG TV +E+ELEDP+ENIG KLVRQA A+TNDLAGDG TTS++LAQGLIAEGVKV
Sbjct: 1 PQIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV 60
Query: 137 IAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQ 196
IAAG NPVQI RGIEKT+KAL+ ELK S+EVED ELADVAAVSAGN+Y +G MI++A+
Sbjct: 61 IAAGANPVQITRGIEKTAKALVLELKKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMS 120
Query: 197 QVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI 256
+VGR GVVT+E+G+ +EN+L +VEGM+F+RG++SPYFVTD +K T E+ + KLLLVDKKI
Sbjct: 121 KVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMTTEYENCKLLLVDKKI 180
Query: 257 KNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316
N +D+ +L+ A++ +YPI+I+AEDIEQ+ALA L+ NKLRG LK AIKAP FGERK+
Sbjct: 181 TNARDLINVLEEAIRGQYPILIIAEDIEQEALATLVVNKLRGSLKICAIKAPGFGERKTQ 240
Query: 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRIS 376
YLDDIAILTGG VIRDE+GLTLDKA VLGTA KVV+TK+ST IV DGST+ V KR++
Sbjct: 241 YLDDIAILTGGTVIRDEVGLTLDKADNTVLGTAAKVVLTKESTTIVGDGSTQEEVTKRVA 300
Query: 377 EIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAI 436
+I++L E E+ ++K LNERIA+L+GG+A++QVGAQT ELK+K+LR+EDALNATKAA+
Sbjct: 301 QIKNLIEAAEQDYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAV 360
Query: 437 EEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFV 496
EEGIVVGGGC+LLRL+AKV+ IK+ L+N+EQK+GAEI +RAL YP KLIAKNAGVNG+ V
Sbjct: 361 EEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVV 420
Query: 497 VDQVSAHKCIIF 508
++V ++ F
Sbjct: 421 TEKVLSNDNFKF 432
|
This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Secale cereale (taxid: 4550) |
| >sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/472 (51%), Positives = 348/472 (73%), Gaps = 4/472 (0%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M K + F + A K L+ G++ +A+ + VT+GPKGRNVVL+ K+G P+IVNDG T+ KE
Sbjct: 1 MAKRILFREE--ARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKE 58
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IEL DPLEN G +L+R+ ++TND+AGDG TT+ ILAQ ++ EG+K I+AG NPV + RG
Sbjct: 59 IELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRG 118
Query: 150 IEKTSKALLSELKLTSREVEDHE-LADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
IEKT+ L+ ++ ++ VE + +A+VA +SAGND VG+MI+ A+ VGR+GV+T+E+
Sbjct: 119 IEKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVITVEE 178
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
K E L++VEGM+FDRG++SPYFVTD ++ E+ + LL+ KI + +D+ IL+
Sbjct: 179 SKSLETELDVVEGMQFDRGYISPYFVTDSERMVAEYENAYLLITSNKISSLQDLVPILER 238
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
+E P++++AED+E +ALA L+ N+LRGVL A A+KAPAFG+R+ L+DIAILTGG
Sbjct: 239 VAREGRPLLVIAEDVEGEALATLVVNRLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQ 298
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
+I +++G+ LDK +++G A K+ +TKD T IVTDGST+AAVEKR+++IR E T+
Sbjct: 299 LISEDVGIKLDKVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSE 358
Query: 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSL 448
+ + L ERIA+L+GG+A+++VGA T ELKD++LRIEDALNAT+AA+EEGIV GGG +L
Sbjct: 359 YDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATL 418
Query: 449 LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
L LS + K L+ EEQ +GAEI RAL P IA NAG+ G+ VV++V
Sbjct: 419 LHLSKGIPAFKAKLNAEEQ-VGAEIVYRALQAPLFQIAHNAGLEGSVVVEKV 469
|
Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332) |
| >sp|Q2JXD4|CH601_SYNJA 60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/472 (51%), Positives = 347/472 (73%), Gaps = 4/472 (0%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M K++ F + A K L+ G++ +A+ V VT+GPKGRNV+L+ K+G P+IVNDG T+ KE
Sbjct: 1 MAKQILFREE--ARKALEQGINQLADAVKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKE 58
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IEL DPLEN G +L+R+ +TND+AGDG TT+ ILAQ ++ EG+K I+AG NPV + RG
Sbjct: 59 IELADPLENTGAQLMREVATKTNDVAGDGTTTATILAQSMVQEGLKNISAGANPVALRRG 118
Query: 150 IEKTSKALLSELKLTSREVEDHE-LADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
IEKT+ L+ ++ ++ VE + +A+VA +SAGND VG+MI+ A+ VGR+GV+T+E+
Sbjct: 119 IEKTTAYLVEQIAAQAKPVEGRKNIAEVATISAGNDPEVGEMIARAMDAVGRDGVITVEE 178
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
K E LE+VEGM+FDRG++SPYFVTD ++ E+ + LL+ K+ N +D+ +L+
Sbjct: 179 SKSLETQLEVVEGMQFDRGYISPYFVTDTERMVAEYENAYLLITSNKLSNLQDLVPVLER 238
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
+E P++++AED+E +ALA L+ NKLRGVL A A+KAPAFG+R+ L+DIAILTGG
Sbjct: 239 VAREGRPLLVIAEDVEGEALATLVVNKLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQ 298
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
+I +++G+ L+ +++G A K+ +TKD T IVTDGST+AAVEKR+++IR E T+
Sbjct: 299 LISEDIGIKLENVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSE 358
Query: 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSL 448
+ + L ERIA+L+GG+A+++VGA T ELKD++LRIEDALNAT+AA+EEGIV GGG +L
Sbjct: 359 YDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATL 418
Query: 449 LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
L LS + K L+ EEQ +GA+I RAL P IA NAG+ G+ VV++V
Sbjct: 419 LHLSKGIPAFKANLNAEEQ-VGADIVCRALQAPLYQIAHNAGLEGSVVVEKV 469
|
Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327) |
| >sp|Q119S1|CH601_TRIEI 60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/471 (51%), Positives = 343/471 (72%), Gaps = 2/471 (0%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M K V F D + + L+ G++ +A+ V +T+GPKGRNV+L+ KYG P+IVNDG TV K+
Sbjct: 1 MAKIVEF--DDKSRRSLERGINTLADAVRITMGPKGRNVLLEKKYGAPQIVNDGITVAKD 58
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELEDPLEN G KL+++ ++T D+AGDG TT+ +LAQ +I EG+K +AAG NPV + RG
Sbjct: 59 IELEDPLENTGAKLIQEVASKTKDIAGDGTTTATVLAQSMIKEGLKNVAAGANPVAVRRG 118
Query: 150 IEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKG 209
IEKT L+ E++ ++ VE +A VA VSAG D VG+MIS+A+ +V ++GV+T+E+
Sbjct: 119 IEKTVSLLVKEIQTVAKPVEGEAIAQVATVSAGGDAEVGRMISEAMDKVTKDGVITVEES 178
Query: 210 KCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSA 269
K LE+VEGM+ DRG+LSPYFVTD+++ V+F + ++L+ DKKI + +D+ +L+
Sbjct: 179 KSLSTDLEVVEGMQIDRGYLSPYFVTDQERLVVDFENARILITDKKISSIQDLVPVLEKV 238
Query: 270 VKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLV 329
+ ++I+AEDIE +ALA L+ NK RGVL AA+KAP FG+R+ L DIAILTGG +
Sbjct: 239 ARAGQSLLIIAEDIEGEALATLVVNKARGVLNVAAVKAPGFGDRRKAMLQDIAILTGGQL 298
Query: 330 IRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389
I +E+GL+L+ +++G K+ I KD+T IV DG T V+KRI++IR ++ +
Sbjct: 299 ISEEVGLSLEMVDLDMMGIGRKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDY 358
Query: 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLL 449
K L ERIA+L+GG+A+++VGA T ELKD++LRIEDALNATKAA+EEGIV GGG +L+
Sbjct: 359 DKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLI 418
Query: 450 RLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
LS KVE +K L+NEE+KIGA+I +RAL P IA N+GV G+ +V++V
Sbjct: 419 HLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKV 469
|
Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Trichodesmium erythraeum (strain IMS101) (taxid: 203124) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 509 | ||||||
| 359473645 | 610 | PREDICTED: chaperonin 60 subunit beta 4, | 0.968 | 0.808 | 0.844 | 0.0 | |
| 255546981 | 592 | rubisco subunit binding-protein beta sub | 0.972 | 0.836 | 0.822 | 0.0 | |
| 297738225 | 584 | unnamed protein product [Vitis vinifera] | 0.925 | 0.806 | 0.866 | 0.0 | |
| 449434702 | 597 | PREDICTED: chaperonin 60 subunit beta 4, | 0.982 | 0.837 | 0.750 | 0.0 | |
| 356502680 | 646 | PREDICTED: ruBisCO large subunit-binding | 0.980 | 0.772 | 0.760 | 0.0 | |
| 449478338 | 597 | PREDICTED: LOW QUALITY PROTEIN: chaperon | 0.982 | 0.837 | 0.749 | 0.0 | |
| 15222666 | 611 | TCP-1/cpn60 chaperonin-like protein [Ara | 0.944 | 0.787 | 0.773 | 0.0 | |
| 356495746 | 575 | PREDICTED: ruBisCO large subunit-binding | 0.941 | 0.833 | 0.780 | 0.0 | |
| 62320622 | 611 | chaperonin precursor [Arabidopsis thalia | 0.944 | 0.787 | 0.771 | 0.0 | |
| 224111818 | 475 | predicted protein [Populus trichocarpa] | 0.884 | 0.947 | 0.818 | 0.0 |
| >gi|359473645|ref|XP_002269341.2| PREDICTED: chaperonin 60 subunit beta 4, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/496 (84%), Positives = 459/496 (92%), Gaps = 3/496 (0%)
Query: 8 IFAISFKNPTLPKRAPNSV---PRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPK 64
+ A+SF N TLP+R+ ++ PRAM KE+YFNHDGSATKKLQAGVD+VAELVGVTLGPK
Sbjct: 2 VSALSFSNLTLPRRSFSTTAWNPRAMAKELYFNHDGSATKKLQAGVDMVAELVGVTLGPK 61
Query: 65 GRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSII 124
GRNVVLQNKYGPPKIVNDGETVLKEIELEDPLEN+GVKLVRQAGA+TN LAGDG TTS+I
Sbjct: 62 GRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNHLAGDGSTTSVI 121
Query: 125 LAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND 184
LA+GLIAEGVKVIAAGMNP+QI+RGIEKT+ AL+SELKL SREVEDHELA VAAVSAGND
Sbjct: 122 LARGLIAEGVKVIAAGMNPIQISRGIEKTAMALVSELKLMSREVEDHELAHVAAVSAGND 181
Query: 185 YTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEF 244
YTVG MISDA++QVGR GV+TIEKGKC ENSL+IVEGM+FDRG+LSPYFVTDRQK VEF
Sbjct: 182 YTVGNMISDAIRQVGRRGVITIEKGKCAENSLQIVEGMQFDRGYLSPYFVTDRQKMMVEF 241
Query: 245 HDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA 304
HD KLLLVDKKI NPK+MFKILD+AVKEKYPIVIVAE IEQ+ALA +IRNKLRGVLKAAA
Sbjct: 242 HDCKLLLVDKKITNPKEMFKILDNAVKEKYPIVIVAEGIEQEALAPVIRNKLRGVLKAAA 301
Query: 305 IKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTD 364
IKAPAFGERKSHYLDD+AILTGG VI DEMGLTL+KAGKEVLGTA KVVITKDSTLIVTD
Sbjct: 302 IKAPAFGERKSHYLDDLAILTGGTVISDEMGLTLEKAGKEVLGTATKVVITKDSTLIVTD 361
Query: 365 GSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLR 424
GST+ AVEKR+S+IR L E TEE FQK ILNERIARLSGGIAILQVGAQT VELKDKQLR
Sbjct: 362 GSTQPAVEKRVSQIRGLVENTEENFQKKILNERIARLSGGIAILQVGAQTQVELKDKQLR 421
Query: 425 IEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKL 484
IEDA+NATKAAIEEG+VVGGGCSLLRLS KV+GIKELLDNEEQKIGAEIFKRAL+YP +L
Sbjct: 422 IEDAVNATKAAIEEGVVVGGGCSLLRLSLKVDGIKELLDNEEQKIGAEIFKRALTYPARL 481
Query: 485 IAKNAGVNGNFVVDQV 500
IAKNAGVN + V+++V
Sbjct: 482 IAKNAGVNDSVVIEKV 497
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546981|ref|XP_002514548.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] gi|223546152|gb|EEF47654.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/500 (82%), Positives = 458/500 (91%), Gaps = 5/500 (1%)
Query: 6 TPIFAISFKNPTLPKR--APNS---VPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVT 60
TPI AISF N T PKR +P+S +AM K++YFNHDGSATKKL AGV +VAELVGVT
Sbjct: 7 TPISAISFTNQTFPKRVSSPSSSMLYLKAMSKDIYFNHDGSATKKLLAGVGMVAELVGVT 66
Query: 61 LGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCT 120
LGPKGRNVVL+NKYGPPKIVNDGETVLK+IELEDPLEN+GVKLVRQAGA+TNDLAGDG T
Sbjct: 67 LGPKGRNVVLENKYGPPKIVNDGETVLKQIELEDPLENVGVKLVRQAGAKTNDLAGDGST 126
Query: 121 TSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVS 180
TS++LA GLIAEGVKVIAAGMNPVQ+ARGIE+TSKAL+SELKL SREVED E+A VAAVS
Sbjct: 127 TSVVLAHGLIAEGVKVIAAGMNPVQVARGIERTSKALVSELKLMSREVEDDEIAAVAAVS 186
Query: 181 AGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKR 240
AGNDY VGKMISDAL++VG+ GVVTI+KG+ +N+L+IV+GM+FDRG+LSPYFVTDR+K
Sbjct: 187 AGNDYAVGKMISDALREVGKRGVVTIDKGEYIDNNLQIVKGMQFDRGYLSPYFVTDRRKM 246
Query: 241 TVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVL 300
TVEFH+ KLLLVDKKI NPK+MFKILD+AVKEKYPIV+VAE IEQ+ALA +IRNKLRG L
Sbjct: 247 TVEFHNCKLLLVDKKITNPKEMFKILDNAVKEKYPIVVVAEGIEQEALAPVIRNKLRGAL 306
Query: 301 KAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTL 360
KAAAIKAPAFGERK HYLDDIAILTG VIRDEMGLTL+K GKEVLG+A KVVITKDSTL
Sbjct: 307 KAAAIKAPAFGERKGHYLDDIAILTGATVIRDEMGLTLEKVGKEVLGSATKVVITKDSTL 366
Query: 361 IVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKD 420
IVTDGST+AAV+KR+S+IR LAE TEE FQK ILNERIARLSGGIAILQVGAQT VELKD
Sbjct: 367 IVTDGSTQAAVQKRVSQIRGLAENTEENFQKKILNERIARLSGGIAILQVGAQTQVELKD 426
Query: 421 KQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSY 480
KQLRIEDALNATKAAIEEG+V+GGGCSLLRLS KV+ IKELLDNEEQKIGAEIFKRALSY
Sbjct: 427 KQLRIEDALNATKAAIEEGVVIGGGCSLLRLSTKVDAIKELLDNEEQKIGAEIFKRALSY 486
Query: 481 PTKLIAKNAGVNGNFVVDQV 500
PT+LIAKNAGVNGN V++Q+
Sbjct: 487 PTRLIAKNAGVNGNIVINQI 506
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738225|emb|CBI27426.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/471 (86%), Positives = 442/471 (93%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M KE+YFNHDGSATKKLQAGVD+VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE
Sbjct: 1 MAKELYFNHDGSATKKLQAGVDMVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 60
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELEDPLEN+GVKLVRQAGA+TN LAGDG TTS+ILA+GLIAEGVKVIAAGMNP+QI+RG
Sbjct: 61 IELEDPLENVGVKLVRQAGAKTNHLAGDGSTTSVILARGLIAEGVKVIAAGMNPIQISRG 120
Query: 150 IEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKG 209
IEKT+ AL+SELKL SREVEDHELA VAAVSAGNDYTVG MISDA++QVGR GV+TIEKG
Sbjct: 121 IEKTAMALVSELKLMSREVEDHELAHVAAVSAGNDYTVGNMISDAIRQVGRRGVITIEKG 180
Query: 210 KCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSA 269
KC ENSL+IVEGM+FDRG+LSPYFVTDRQK VEFHD KLLLVDKKI NPK+MFKILD+A
Sbjct: 181 KCAENSLQIVEGMQFDRGYLSPYFVTDRQKMMVEFHDCKLLLVDKKITNPKEMFKILDNA 240
Query: 270 VKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLV 329
VKEKYPIVIVAE IEQ+ALA +IRNKLRGVLKAAAIKAPAFGERKSHYLDD+AILTGG V
Sbjct: 241 VKEKYPIVIVAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDLAILTGGTV 300
Query: 330 IRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389
I DEMGLTL+KAGKEVLGTA KVVITKDSTLIVTDGST+ AVEKR+S+IR L E TEE F
Sbjct: 301 ISDEMGLTLEKAGKEVLGTATKVVITKDSTLIVTDGSTQPAVEKRVSQIRGLVENTEENF 360
Query: 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLL 449
QK ILNERIARLSGGIAILQVGAQT VELKDKQLRIEDA+NATKAAIEEG+VVGGGCSLL
Sbjct: 361 QKKILNERIARLSGGIAILQVGAQTQVELKDKQLRIEDAVNATKAAIEEGVVVGGGCSLL 420
Query: 450 RLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
RLS KV+GIKELLDNEEQKIGAEIFKRAL+YP +LIAKNAGVN + V+++V
Sbjct: 421 RLSLKVDGIKELLDNEEQKIGAEIFKRALTYPARLIAKNAGVNDSVVIEKV 471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434702|ref|XP_004135135.1| PREDICTED: chaperonin 60 subunit beta 4, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/518 (75%), Positives = 446/518 (86%), Gaps = 18/518 (3%)
Query: 1 MAALSTPIFAISFKNP-----TLPKRAP-------------NSVPRAMVKEVYFNHDGSA 42
MA+ TPI +SF NP T PK P NS P+ K++YFNHDGS
Sbjct: 1 MASSPTPISPLSFTNPISTSRTKPKSLPFPNKPPSSLPPALNSTPKPPPKDLYFNHDGST 60
Query: 43 TKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVK 102
KKLQ GV+LVAELVG+TLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLEN+GVK
Sbjct: 61 FKKLQVGVNLVAELVGITLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
Query: 103 LVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK 162
LVRQAGA+TNDLAGDG TTS++LAQGLIAEG+KVIA+GMNPVQIARGIEKT+KAL+SELK
Sbjct: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVIASGMNPVQIARGIEKTAKALVSELK 180
Query: 163 LTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGM 222
L SREVEDHE+A VAAVSAGNDY VG ++SDA +QVG GVV IEKGK +NSL+IVEGM
Sbjct: 181 LMSREVEDHEIAHVAAVSAGNDYAVGSLVSDAFRQVGWKGVVQIEKGKSVDNSLQIVEGM 240
Query: 223 RFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAED 282
+FDRG+LSPYFVTDR+K VEFH+ KLLLVDKKI +PK+MFKILD+AVKEKYPIVI+AE
Sbjct: 241 QFDRGYLSPYFVTDRRKMVVEFHECKLLLVDKKISDPKEMFKILDNAVKEKYPIVILAEG 300
Query: 283 IEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAG 342
IE +ALA +IRNKLRGVLKAAAIKAPAFGERKSHYLDDIA LTG V+R++ GLTL+K G
Sbjct: 301 IEPEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDNGLTLEKTG 360
Query: 343 KEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLS 402
KEVLG+A KVVI+KDSTLIVTDG+TR AV+KR+ +I+ L E TEE+F K ILNERIARLS
Sbjct: 361 KEVLGSACKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEEKFPKKILNERIARLS 420
Query: 403 GGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELL 462
G IAI+QVGAQT VELKD+QLRIEDALNA+KAAIEEG+VVGGGC LLRLS KV+ IK +L
Sbjct: 421 GRIAIIQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVL 480
Query: 463 DNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
+N+EQ +GAEIFKRALSYPTKLIA+NAGVNG+ V+D++
Sbjct: 481 ENDEQMVGAEIFKRALSYPTKLIARNAGVNGSVVIDKI 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502680|ref|XP_003520145.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/505 (76%), Positives = 442/505 (87%), Gaps = 6/505 (1%)
Query: 10 AISFKNPTLPKRAPNSV------PRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGP 63
+ +F NP+ R NS+ PRAM KE+YFNHDGSATKKL AGVD+VAEL+GVTLGP
Sbjct: 5 SFTFANPSSIPRLRNSLSSSSISPRAMAKELYFNHDGSATKKLLAGVDMVAELLGVTLGP 64
Query: 64 KGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSI 123
KGRNVVL NKYGPPKIVNDGETVLKEIELEDPLEN+GVKLVRQAGA+TND AGDG TTS+
Sbjct: 65 KGRNVVLPNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDQAGDGSTTSV 124
Query: 124 ILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGN 183
+LA+GLI EG KVIAAGMNPVQIARGIEKT+ AL+SEL+L SREVEDHELADVAAVSAGN
Sbjct: 125 VLARGLIREGTKVIAAGMNPVQIARGIEKTAAALVSELRLMSREVEDHELADVAAVSAGN 184
Query: 184 DYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVE 243
DY+VG MIS+AL +VGR GVVTIE G+ TEN LEIVEGM+FDRG+LSPYFV +R+K TVE
Sbjct: 185 DYSVGNMISEALHKVGRMGVVTIETGRSTENCLEIVEGMQFDRGYLSPYFVNNRRKMTVE 244
Query: 244 FHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAA 303
H+ KLLLVDKKI K++ IL+++ KEKYP++IVAE IEQ+ALA +I+NKLRG LK A
Sbjct: 245 LHNCKLLLVDKKITKTKELINILNNSAKEKYPVLIVAEGIEQEALAPVIKNKLRGALKVA 304
Query: 304 AIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVT 363
AIKAPAFGERK+HYL+DIAILTGG VIR++MG TL+KA K LG+A KVVITK+STLIVT
Sbjct: 305 AIKAPAFGERKTHYLEDIAILTGGTVIREDMGFTLEKAHKNDLGSATKVVITKNSTLIVT 364
Query: 364 DGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQL 423
DGSTR AVEKR+ ++R L E T E FQKNILNERIARLSGGIAILQVGAQT VELKDKQL
Sbjct: 365 DGSTREAVEKRVHQLRRLVENTVENFQKNILNERIARLSGGIAILQVGAQTQVELKDKQL 424
Query: 424 RIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTK 483
R+EDALNATKAAIEEG+VVGGGCSLLRLS KV+GIK+LLDNEEQ+IGAEIF+RALSYPT+
Sbjct: 425 RVEDALNATKAAIEEGVVVGGGCSLLRLSQKVDGIKKLLDNEEQQIGAEIFRRALSYPTR 484
Query: 484 LIAKNAGVNGNFVVDQVSAHKCIIF 508
+IAKNAG+NGN ++D+V + + F
Sbjct: 485 MIAKNAGLNGNVIIDKVLSDNNMNF 509
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478338|ref|XP_004155289.1| PREDICTED: LOW QUALITY PROTEIN: chaperonin 60 subunit beta 4, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/518 (74%), Positives = 445/518 (85%), Gaps = 18/518 (3%)
Query: 1 MAALSTPIFAISFKNP-----TLPKRAP-------------NSVPRAMVKEVYFNHDGSA 42
MA+ TPI +SF NP T PK P NS P+ K++YFNHDGS
Sbjct: 1 MASSPTPISPLSFTNPISTSRTKPKSLPFPNKPPSSLPPALNSTPKPPPKDLYFNHDGST 60
Query: 43 TKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVK 102
KKLQ GV+LVAELVG+TLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLEN+GVK
Sbjct: 61 FKKLQVGVNLVAELVGITLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVK 120
Query: 103 LVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK 162
LVRQAGA+TNDLAGDG TTS++LAQGLIAEG+KVIA+GMNPVQIARGIEKT+KAL+SELK
Sbjct: 121 LVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVIASGMNPVQIARGIEKTAKALVSELK 180
Query: 163 LTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGM 222
L SREVEDHE+A VAAVSAGNDY VG ++SDA +QVG GVV IEKGK +NSL+IVEGM
Sbjct: 181 LMSREVEDHEIAHVAAVSAGNDYAVGSLVSDAFRQVGWKGVVQIEKGKSVDNSLQIVEGM 240
Query: 223 RFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAED 282
+FDRG+LSPYFVTDR+K VEFH+ KLLLVDKKI +PK+MFKILD+AVKEKYPIVI+AE
Sbjct: 241 QFDRGYLSPYFVTDRRKMVVEFHECKLLLVDKKISDPKEMFKILDNAVKEKYPIVILAEG 300
Query: 283 IEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAG 342
IE +ALA +IRNKLRGVLKAAAIKAPAFGERKSHYLDDIA LTG V+R++ GLTL+K G
Sbjct: 301 IEPEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDNGLTLEKTG 360
Query: 343 KEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLS 402
KEVLG+A KVVI+KDSTLIVTDG+TR AV+KR+ +I+ L E TEE+F K ILNERIARLS
Sbjct: 361 KEVLGSACKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTEEKFPKKILNERIARLS 420
Query: 403 GGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELL 462
G IAI+QVGAQT VELKD+QLRIEDALNA+KAAIEEG+VVGGGC LRLS KV+ IK +L
Sbjct: 421 GRIAIIQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCXLRLSTKVDAIKNVL 480
Query: 463 DNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
+N+EQ +GAEIFKRALSYPTKLIA+NAGVNG+ V+D++
Sbjct: 481 ENDEQMVGAEIFKRALSYPTKLIARNAGVNGSVVIDKI 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222666|ref|NP_173947.1| TCP-1/cpn60 chaperonin-like protein [Arabidopsis thaliana] gi|75308802|sp|Q9C667.1|CPNB4_ARATH RecName: Full=Chaperonin 60 subunit beta 4, chloroplastic; Short=CPN-60 beta 4; Flags: Precursor gi|12321186|gb|AAG50688.1|AC079829_21 chaperonin precursor, putative [Arabidopsis thaliana] gi|332192542|gb|AEE30663.1| TCP-1/cpn60 chaperonin-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/481 (77%), Positives = 429/481 (89%)
Query: 28 RAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVL 87
RA KEV+FN DGS TKKLQAG D+VA+L+GVTLGPKGRNVVLQNKYGPP+IVNDGETVL
Sbjct: 37 RAAAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVL 96
Query: 88 KEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIA 147
KEIELEDPLEN+GVKLVRQAGA+TNDLAGDG TTSIILA GLI EG+KVI+AG NP+Q+A
Sbjct: 97 KEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVA 156
Query: 148 RGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIE 207
RGIEKT+KAL+ ELK SRE+EDHELA VAAVSAGNDY VG MIS+A QQVGR GVVTIE
Sbjct: 157 RGIEKTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIE 216
Query: 208 KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILD 267
KGK N+LEIVEGM+F+RG+LSPYFVTDR+KR EFHD KLLLVDKKI NPKDMFKILD
Sbjct: 217 KGKYLVNNLEIVEGMQFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILD 276
Query: 268 SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGG 327
SAVKE++P++IVAEDIEQ ALA +IRNKL+G LK AAIKAPAFGERKSH LDD+AI TG
Sbjct: 277 SAVKEEFPVLIVAEDIEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGA 336
Query: 328 LVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEE 387
VIRDEMGL+L+KAGKEVLGTA +V++TKDSTLIVT+G T+ AV++R+S+I++L E TEE
Sbjct: 337 TVIRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTEE 396
Query: 388 RFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCS 447
FQK ILNER+ARLSGGIAI+QVGA T VELKDKQL++EDALNATK+AIEEGIVVGGGC+
Sbjct: 397 NFQKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGCA 456
Query: 448 LLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCII 507
LLRL+ KV+ IKE LDN EQKIGAEIFK+ALSYP +LIAKNA NGN V+++V ++K +
Sbjct: 457 LLRLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEKVLSNKNTM 516
Query: 508 F 508
+
Sbjct: 517 Y 517
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495746|ref|XP_003516734.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/479 (78%), Positives = 426/479 (88%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M KE+YFNHDGSA KKL AGVD+VAEL+GVTLGPKGRNVVL NKYGPPKIVNDGETVLKE
Sbjct: 1 MAKELYFNHDGSAMKKLLAGVDMVAELLGVTLGPKGRNVVLPNKYGPPKIVNDGETVLKE 60
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELEDPLEN+GVKLVRQAGA+TND AGDG TTS++LA GLI EG KVIAAGMNPVQIARG
Sbjct: 61 IELEDPLENVGVKLVRQAGAKTNDQAGDGSTTSVVLAHGLIREGAKVIAAGMNPVQIARG 120
Query: 150 IEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKG 209
IEKT+ AL+SEL+L SREVEDHELADVAAVSAGNDY+VG MIS+AL QVGR+GVVTIE G
Sbjct: 121 IEKTATALVSELRLMSREVEDHELADVAAVSAGNDYSVGNMISEALHQVGRSGVVTIETG 180
Query: 210 KCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSA 269
+ TENSLEIVEGM+FDRG+LSPYFV +R+K TVE H+ KLLLVDKKI K++ IL+++
Sbjct: 181 RSTENSLEIVEGMQFDRGYLSPYFVNNRRKMTVELHNCKLLLVDKKITKTKELINILNNS 240
Query: 270 VKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLV 329
KEKYP++IVAE IEQ+ALA +I+NKLRG LK AAIKAPAFGERK+HYL+DIAILTGG V
Sbjct: 241 AKEKYPVLIVAEGIEQEALAPVIKNKLRGALKVAAIKAPAFGERKTHYLEDIAILTGGTV 300
Query: 330 IRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389
IR++MG L+KA K LG+A KVVITK+STLIVTDGSTR AVEKR+ ++R L E T E F
Sbjct: 301 IREDMGFNLEKAHKNDLGSATKVVITKNSTLIVTDGSTREAVEKRVCQLRRLVENTVENF 360
Query: 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLL 449
QK ILNERIARLSGGIAILQVGAQT VELKDKQLRIEDALNATKAAIEEG+VVGGGC LL
Sbjct: 361 QKKILNERIARLSGGIAILQVGAQTQVELKDKQLRIEDALNATKAAIEEGVVVGGGCCLL 420
Query: 450 RLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCIIF 508
RLS KV+GIK+LL+NEEQ+IGAEIF+RALSYPT++IAKNAGVNGN ++D+V + + F
Sbjct: 421 RLSQKVDGIKKLLENEEQQIGAEIFRRALSYPTRMIAKNAGVNGNVIIDKVLSDDNLNF 479
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|62320622|dbj|BAD95277.1| chaperonin precursor [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/481 (77%), Positives = 428/481 (88%)
Query: 28 RAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVL 87
RA KEV+FN DGS TKKLQAG D+VA+L+GVTLGPKGRNVVLQNKYGPP+IVNDGETVL
Sbjct: 37 RAAAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVL 96
Query: 88 KEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIA 147
KEIELEDPLEN+GVKLVRQAGA+TNDLAGDG TTSIILA GLI EG+KVI+AG NP+Q+A
Sbjct: 97 KEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVA 156
Query: 148 RGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIE 207
RGIEKT+KAL+ ELK SRE+EDHELA VAAVSAGNDY VG MIS+A QQVGR GVVTIE
Sbjct: 157 RGIEKTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIE 216
Query: 208 KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILD 267
KGK N+LEIVEGM+F+RG+LSPYFVTDR+KR EFHD KLLLVDKKI NPKDMFKILD
Sbjct: 217 KGKYLVNNLEIVEGMQFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILD 276
Query: 268 SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGG 327
SAVKE++P++IVAEDIEQ ALA +IRNKL+G LK AAIKAPAFGERKSH LDD+AI TG
Sbjct: 277 SAVKEEFPVLIVAEDIEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGA 336
Query: 328 LVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEE 387
VIRDEMGL+L+KAGKEVLGTA +V++TKDSTLIVT+G T+ AV++R+S+I++L E EE
Sbjct: 337 TVIRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENNEE 396
Query: 388 RFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCS 447
FQK ILNER+ARLSGGIAI+QVGA T VELKDKQL++EDALNATK+AIEEGIVVGGGC+
Sbjct: 397 NFQKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGCA 456
Query: 448 LLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCII 507
LLRL+ KV+ IKE LDN EQKIGAEIFK+ALSYP +LIAKNA NGN V+++V ++K +
Sbjct: 457 LLRLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEKVLSNKNTM 516
Query: 508 F 508
+
Sbjct: 517 Y 517
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111818|ref|XP_002315987.1| predicted protein [Populus trichocarpa] gi|222865027|gb|EEF02158.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/457 (81%), Positives = 415/457 (90%), Gaps = 7/457 (1%)
Query: 52 LVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111
+V+EL+GVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLEN+GVKLVRQAGA+T
Sbjct: 1 MVSELLGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKT 60
Query: 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH 171
N+LAGDG TTS++LA GLIAEG KVIA+GMNPVQIARGI KTS+AL+SELKL SREVE+
Sbjct: 61 NNLAGDGSTTSVVLAHGLIAEGQKVIASGMNPVQIARGIVKTSEALVSELKLMSREVEND 120
Query: 172 ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSP 231
ELADVAAVSAGNDYTVG MISDALQQVGR GVVTIEKG+CTEN LEIVEGM+FDRG+LSP
Sbjct: 121 ELADVAAVSAGNDYTVGNMISDALQQVGRRGVVTIEKGRCTENILEIVEGMQFDRGYLSP 180
Query: 232 YFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALL 291
YFVTDRQ+ VEFH+ KLLLVDKKI+N K++FKILD+AVKE YPIVIVAED++Q+ALA +
Sbjct: 181 YFVTDRQRMVVEFHNCKLLLVDKKIQNAKEVFKILDNAVKEMYPIVIVAEDVDQEALAPI 240
Query: 292 IRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIK 351
IRNKL+G+LK AAIKAPAFGERKSHYLDDIAILTGG VIRD+MGL L+KAGKEVLGTA K
Sbjct: 241 IRNKLKGLLKGAAIKAPAFGERKSHYLDDIAILTGGTVIRDDMGLKLEKAGKEVLGTATK 300
Query: 352 VVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVG 411
VVITKDSTLIVTDGSTR AVEKR+S+I SL E TEE+FQK ILNERIARLSGGIAILQVG
Sbjct: 301 VVITKDSTLIVTDGSTREAVEKRVSQICSLVENTEEKFQKKILNERIARLSGGIAILQVG 360
Query: 412 AQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471
AQT VELKDK LRIEDALNATKAAIEEG+VVGGGCSLLRLS K + +LL KIGA
Sbjct: 361 AQTQVELKDKLLRIEDALNATKAAIEEGVVVGGGCSLLRLSTK---LFQLL----TKIGA 413
Query: 472 EIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCIIF 508
EIFKRALSYP +LIAKNAGVNGN V++QV ++ I +
Sbjct: 414 EIFKRALSYPARLIAKNAGVNGNVVINQVLSNADIRY 450
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 509 | ||||||
| TAIR|locus:2028751 | 611 | Cpn60beta4 "chaperonin-60beta4 | 0.988 | 0.823 | 0.753 | 3e-195 | |
| TAIR|locus:2092825 | 596 | Cpn60beta2 "chaperonin-60beta2 | 0.988 | 0.843 | 0.650 | 6.2e-172 | |
| TAIR|locus:2193839 | 600 | CPN60B "chaperonin 60 beta" [A | 0.960 | 0.815 | 0.659 | 2.7e-171 | |
| UNIPROTKB|Q05972 | 541 | groL1 "60 kDa chaperonin 1" [S | 0.919 | 0.865 | 0.487 | 9.8e-119 | |
| TIGR_CMR|CBU_1718 | 552 | CBU_1718 "chaperonin, 60 kDa" | 0.919 | 0.847 | 0.465 | 1.8e-117 | |
| TIGR_CMR|SO_0704 | 545 | SO_0704 "chaperonin GroEL" [Sh | 0.913 | 0.853 | 0.478 | 1.3e-116 | |
| TIGR_CMR|CJE_1356 | 545 | CJE_1356 "co-chaperonin GroEL" | 0.917 | 0.856 | 0.472 | 1e-114 | |
| TIGR_CMR|GSU_3340 | 544 | GSU_3340 "60 kDa chaperonin" [ | 0.915 | 0.856 | 0.463 | 2.2e-114 | |
| UNIPROTKB|Q9KNR7 | 544 | groL1 "60 kDa chaperonin 1" [V | 0.917 | 0.858 | 0.461 | 2.8e-114 | |
| TIGR_CMR|VC_2664 | 544 | VC_2664 "chaperonin, 60 Kd sub | 0.917 | 0.858 | 0.461 | 2.8e-114 |
| TAIR|locus:2028751 Cpn60beta4 "chaperonin-60beta4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1891 (670.7 bits), Expect = 3.0e-195, P = 3.0e-195
Identities = 383/508 (75%), Positives = 442/508 (87%)
Query: 2 AALST-PIFAISF-KNPTLPKRA-PNSV--PRAMVKEVYFNHDGSATKKLQAGVDLVAEL 56
AALS P+ +F K P+ + PN V RA KEV+FN DGS TKKLQAG D+VA+L
Sbjct: 6 AALSALPLSDRTFRKKPSSSSSSSPNFVLRVRAAAKEVHFNRDGSVTKKLQAGADMVAKL 65
Query: 57 VGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAG 116
+GVTLGPKGRNVVLQNKYGPP+IVNDGETVLKEIELEDPLEN+GVKLVRQAGA+TNDLAG
Sbjct: 66 LGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAG 125
Query: 117 DGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADV 176
DG TTSIILA GLI EG+KVI+AG NP+Q+ARGIEKT+KAL+ ELK SRE+EDHELA V
Sbjct: 126 DGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSREIEDHELAHV 185
Query: 177 AAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTD 236
AAVSAGNDY VG MIS+A QQVGR GVVTIEKGK N+LEIVEGM+F+RG+LSPYFVTD
Sbjct: 186 AAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKGKYLVNNLEIVEGMQFNRGYLSPYFVTD 245
Query: 237 RQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKL 296
R+KR EFHD KLLLVDKKI NPKDMFKILDSAVKE++P++IVAEDIEQ ALA +IRNKL
Sbjct: 246 RRKREAEFHDCKLLLVDKKITNPKDMFKILDSAVKEEFPVLIVAEDIEQDALAPVIRNKL 305
Query: 297 RGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITK 356
+G LK AAIKAPAFGERKSH LDD+AI TG VIRDEMGL+L+KAGKEVLGTA +V++TK
Sbjct: 306 KGNLKVAAIKAPAFGERKSHCLDDLAIFTGATVIRDEMGLSLEKAGKEVLGTAKRVLVTK 365
Query: 357 DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVV 416
DSTLIVT+G T+ AV++R+S+I++L E TEE FQK ILNER+ARLSGGIAI+QVGA T V
Sbjct: 366 DSTLIVTNGFTQKAVDERVSQIKNLIENTEENFQKKILNERVARLSGGIAIIQVGALTQV 425
Query: 417 ELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKR 476
ELKDKQL++EDALNATK+AIEEGIVVGGGC+LLRL+ KV+ IKE LDN EQKIGAEIFK+
Sbjct: 426 ELKDKQLKVEDALNATKSAIEEGIVVGGGCALLRLATKVDRIKETLDNTEQKIGAEIFKK 485
Query: 477 ALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
ALSYP +LIAKNA NGN V+++V ++K
Sbjct: 486 ALSYPIRLIAKNADTNGNIVIEKVLSNK 513
|
|
| TAIR|locus:2092825 Cpn60beta2 "chaperonin-60beta2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1671 (593.3 bits), Expect = 6.2e-172, P = 6.2e-172
Identities = 329/506 (65%), Positives = 422/506 (83%)
Query: 5 STPIFAISF--KNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLG 62
+T I + SF ++ +R+ ++ A KE++FN DG+ +KLQ GV+ +A+LVGVTLG
Sbjct: 25 ATSISSSSFGRRHNVCVRRSRPAIVCA-AKELHFNKDGTTIRKLQTGVNKLADLVGVTLG 83
Query: 63 PKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTS 122
PKGRNVVL++KYG P+IVNDG TV +E+ELEDP+ENIG KLVRQA A+TNDLAGDG TTS
Sbjct: 84 PKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTS 143
Query: 123 IILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAG 182
++LAQG IAEGVKV+AAG NPV I RGIEKT+KAL++ELKL S+EVED ELADVAAVSAG
Sbjct: 144 VVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKEVEDSELADVAAVSAG 203
Query: 183 NDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTV 242
N++ VG MI++A+ +VGR GVVT+E+GK EN+L +VEGM+FDRG++SPYFVTD +K +V
Sbjct: 204 NNHEVGSMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSV 263
Query: 243 EFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKA 302
E+ + KLLLVDKK+ N +D+ +L+ A++ YPI+I+AEDIEQ+ALA L+ NKLRG LK
Sbjct: 264 EYDNCKLLLVDKKVTNARDLVGVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKI 323
Query: 303 AAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIV 362
AA+KAP FGERKS YLDDIAILTG VIR+E+GL+LDKAGKEVLG A KVV+TK+ T IV
Sbjct: 324 AALKAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGKEVLGNASKVVLTKEMTTIV 383
Query: 363 TDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQ 422
DG+T+ AV KR+ +IR+L E E+ ++K LNERIA+LSGG+A++QVGAQT ELK+K+
Sbjct: 384 GDGTTQEAVNKRVVQIRNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKK 443
Query: 423 LRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPT 482
LR+EDALNATKAA+EEGIVVGGGC+LLRL++KV+ IK+ L+N+E+K+GAEI KRALSYP
Sbjct: 444 LRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEEKVGAEIVKRALSYPL 503
Query: 483 KLIAKNAGVNGNFVVDQVSAHKCIIF 508
KLIAKNAGVNG+ V ++V A+ + F
Sbjct: 504 KLIAKNAGVNGSVVSEKVLANDNVKF 529
|
|
| TAIR|locus:2193839 CPN60B "chaperonin 60 beta" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1665 (591.2 bits), Expect = 2.7e-171, P = 2.7e-171
Identities = 323/490 (65%), Positives = 417/490 (85%)
Query: 19 PKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPK 78
P+R+ +++ A KE++FN DG+ ++LQAGV+ +A+LVGVTLGPKGRNVVL++KYG P+
Sbjct: 45 PRRSSSAIVCA-AKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPR 103
Query: 79 IVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIA 138
IVNDG TV +E+ELEDP+ENIG KLVRQA A+TNDLAGDG TTS++LAQG IAEGVKV+A
Sbjct: 104 IVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVA 163
Query: 139 AGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQV 198
AG NPV I RGIEKT+KAL++ELK S+EVED ELADVAAVSAGN+ +G MI++A+ +V
Sbjct: 164 AGANPVLITRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKV 223
Query: 199 GRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN 258
GR GVVT+E+GK EN+L +VEGM+FDRG++SPYFVTD +K +VEF + KLLLVDKKI N
Sbjct: 224 GRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITN 283
Query: 259 PKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL 318
+D+ +L+ A++ YPI+I+AEDIEQ+ALA L+ NKLRG LK AA++AP FGERKS YL
Sbjct: 284 ARDLVGVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYL 343
Query: 319 DDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEI 378
DDIAILTG VIR+E+GL+LDKAGKEVLG A KVV+TK+++ IV DGST+ AV+KR+++I
Sbjct: 344 DDIAILTGATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQI 403
Query: 379 RSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438
++L E E+ ++K LNERIA+LSGG+A++QVGAQT ELK+K+LR+EDALNATKAA+EE
Sbjct: 404 KNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE 463
Query: 439 GIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVD 498
GIVVGGGC+LLRL++KV+ IK LDN+E+K+GA+I KRALSYP KLIAKNAGVNG+ V +
Sbjct: 464 GIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSE 523
Query: 499 QVSAHKCIIF 508
+V ++ + F
Sbjct: 524 KVLSNDNVKF 533
|
|
| UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 230/472 (48%), Positives = 338/472 (71%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M K + +N + A + L+ G+D++AE V VTLGPKGRNVVL+ K+G P+I+NDG T+ KE
Sbjct: 1 MAKSIIYNDE--ARRALERGMDILAEAVAVTLGPKGRNVVLEKKFGSPQIINDGITIAKE 58
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELED +EN GV L+RQA ++TND+AGDG TT+ +LA ++ EG++ +AAG NP+ + RG
Sbjct: 59 IELEDHVENTGVSLIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKRG 118
Query: 150 IEKTSKALLSELKLTSREVEDHE-LADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
I+K + L++ +K ++ V D + +A V A+SAGND VG+MI++A+ +VG+ GV+++E+
Sbjct: 119 IDKATDFLVARIKEHAQPVGDSKAIAQVGAISAGNDEEVGQMIANAMDKVGQEGVISLEE 178
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
GK LEI EGMRFD+G++SPYFVTD ++ D ++L+ DKKI +D+ IL+
Sbjct: 179 GKSMTTELEITEGMRFDKGYISPYFVTDAERMEAVLEDPRILITDKKINLVQDLVPILEQ 238
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
++ P++I+AEDIE++ALA L+ N+LRGVL AA+KAP FG+R+ L+DIA LTGG
Sbjct: 239 VARQGKPLLIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKQMLEDIATLTGGQ 298
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
VI ++ GL L+ A + LG+A ++ ITKD+T IV +G+ AAV+ R +IR E T+
Sbjct: 299 VISEDAGLKLESATVDSLGSARRINITKDNTTIVAEGN-EAAVKSRCEQIRRQIEETDSS 357
Query: 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSL 448
+ K L ER+A+L+GG+A+++VGA T E+KD++LR+EDA+NATKAA+EEGIV GGG +L
Sbjct: 358 YDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTL 417
Query: 449 LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
L+ ++E +E+ GA I RAL P K IA+NAG NG + ++V
Sbjct: 418 AHLAPQLEDWATGNLKDEELTGALIVARALPAPLKRIAENAGQNGAVISERV 469
|
|
| TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 221/475 (46%), Positives = 339/475 (71%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
K + F+H+ + GV+++A V VTLGPKGRNVVL +G P I DG +V KEIE
Sbjct: 4 KVLKFSHE--VLHAMSRGVEVLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIE 61
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LED EN+G ++V++ +RT+D AGDG TT+ +LAQ ++ EG+K + AGMNP+ + RGI+
Sbjct: 62 LEDKFENMGAQMVKEVASRTSDDAGDGTTTATVLAQAILVEGIKAVIAGMNPMDLKRGID 121
Query: 152 KTSKALLSELKLTSREVEDHE-LADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
K A ++ELK S+ +D + +A V +SA +D ++G +I++A+++VG+ GV+T+E G
Sbjct: 122 KAVTAAVAELKKISKPCKDQKAIAQVGTISANSDKSIGDIIAEAMEKVGKEGVITVEDGS 181
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
EN+LE+VEGM+FDRG+LSPYF+ ++Q + E + +LLVDKKI N +++ +L++
Sbjct: 182 GLENALEVVEGMQFDRGYLSPYFINNQQNMSAELENPFILLVDKKISNIRELIPLLENVA 241
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
K P++++AEDIE +ALA L+ N +RGV+K AA+KAP FG+R+ L DIA+LTGG VI
Sbjct: 242 KSGRPLLVIAEDIEGEALATLVVNNIRGVVKVAAVKAPGFGDRRKAMLQDIAVLTGGKVI 301
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAA-VEKRISEIRSLAEITEERF 389
+E+GL+L+ A + LG+A +VV+TKD T I+ DGS A ++ R+ +IR E + +
Sbjct: 302 SEEVGLSLEAASLDDLGSAKRVVVTKDDTTII-DGSGDAGDIKNRVEQIRKEIENSSSDY 360
Query: 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLL 449
K L ER+A+L+GG+A+++VGA T VE+K+K+ R+EDAL+AT+AA+EEG+V GGG +L+
Sbjct: 361 DKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALI 420
Query: 450 RLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
R+ ++ ++ ++NE+Q++G EI +RA++YP I KN GV V D+V HK
Sbjct: 421 RVLKSLDSVE--VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHK 473
|
|
| TIGR_CMR|SO_0704 SO_0704 "chaperonin GroEL" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
Identities = 225/470 (47%), Positives = 335/470 (71%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
KEV F +D A K+ AGV+++A V VTLGPKGRNVVL +G P I DG +V KEIE
Sbjct: 4 KEVVFGND--ARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEIE 61
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LED EN+G ++V++ ++ ND AGDG TT+ +LAQ ++ EG+K +AAGMNP+ + RGI+
Sbjct: 62 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGID 121
Query: 152 KTSKALLSELKLTSREVEDHE-LADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
K A ++ELK S++ D + +A V +SA +D ++G++I+ A+++VG+ GV+T+E+G+
Sbjct: 122 KAVIAAVAELKNLSQDCADSKAIAQVGTISANSDESIGQIIATAMEKVGKEGVITVEEGQ 181
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
EN L++VEGM+FDRG+LSPYF+ + +VE +LLVDKKI N +++ IL+
Sbjct: 182 ALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLA 241
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
K P++IVAED+E +ALA L+ N +RG++K AA+KAP FG+R+ L D+AILTGG VI
Sbjct: 242 KTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVI 301
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390
+E+GL L+KA E LGTA +VVITKD+T I+ +A +E R+S+I+ E + +
Sbjct: 302 AEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYD 361
Query: 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450
K L ER+A+L+GG+A+++VGA T VE+K+K+ R+EDAL+AT+AA+EEG+V GGG +L+R
Sbjct: 362 KEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIR 421
Query: 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
+++K+ ++ + NE+QK G I RA+ P + IA NAG + V + V
Sbjct: 422 VASKIADVE--VANEDQKHGVVIALRAMEAPLRQIATNAGEEASVVANNV 469
|
|
| TIGR_CMR|CJE_1356 CJE_1356 "co-chaperonin GroEL" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 226/478 (47%), Positives = 338/478 (70%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M KE+ F+ + A KL GV + + V VT+GP+GRNV++Q +G P I DG +V KE
Sbjct: 1 MAKEIIFSDE--ARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKE 58
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
+EL+D LEN+G LVR+ ++T D AGDG TT+ +LA + EG++ I AG NP+++ RG
Sbjct: 59 VELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRG 118
Query: 150 IEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
++K +A+++ELK SREV+D E+A VA +SA +D +G +I+DA+++VG++GV+T+E+
Sbjct: 119 MDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNLIADAMEKVGKDGVITVEE 178
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
K + L +VEGM+FDRG+LSPYF+T+ +K TVE +LL DKKI N KD+ +L+
Sbjct: 179 AKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPYILLFDKKIANLKDLLPVLEQ 238
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
K P++I+AEDIE +ALA L+ NKLRGVL +A+KAP FG+R+ L+DIAILTGG
Sbjct: 239 IQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGE 298
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRS-LAEITEE 387
VI +E+G TL+ A + LG A V+I KD+T IV +A ++ R+++I++ +AE T +
Sbjct: 299 VISEELGRTLESATIQDLGQASSVIIDKDNTTIVNGAGEKANIDARVNQIKAQIAETTSD 358
Query: 388 RFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCS 447
+ + L ER+A+LSGG+A+++VGA T E+K+K+ R++DAL+ATKAA+EEGIV+GGG +
Sbjct: 359 -YDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAA 417
Query: 448 LLRLSAKVEGIKELLDNE-EQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
L++ AK++ LD + ++ IGA I +RAL P + IA+NAG + VV+ V K
Sbjct: 418 LIKAKAKIK-----LDLQGDEAIGAAIVERALRAPLRQIAENAGFDAGVVVNSVENAK 470
|
|
| TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 219/472 (46%), Positives = 327/472 (69%)
Query: 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELE 93
+ F+ +G + GV+ +A+ V VTLGPKGRNVV++ +G P I DG TV KEIELE
Sbjct: 6 IKFDQEGR--NAILKGVNTLADAVKVTLGPKGRNVVIEKAFGSPLITKDGVTVAKEIELE 63
Query: 94 DPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKT 153
D EN+G +LV++ ++T+D+AGDG TT+ +LAQ + +G K++AAG NP++I RGI+K
Sbjct: 64 DKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGSKLVAAGHNPMEIKRGIDKA 123
Query: 154 SKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCT 212
+ +++ELK S+ ++DH E+A V +SA ND T+G +I+ A+++VG+ GV+T+E+ K
Sbjct: 124 VETIVAELKSISKPIKDHKEIAQVGTISANNDKTIGDIIAQAMEKVGKEGVITVEEAKAM 183
Query: 213 ENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKE 272
E SLE VEGM+FDRG+LSPYFVTD ++ + +L+ DKKI N KD+ +L+ K
Sbjct: 184 ETSLETVEGMQFDRGYLSPYFVTDPERMEASLENAMILIHDKKISNMKDLLPVLEQTAKS 243
Query: 273 KYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRD 332
P++I+AEDIE +ALA L+ NKLRGVL A+KAP FG+R+ L+DIAILTGG VI +
Sbjct: 244 GRPLLIIAEDIEGEALATLVVNKLRGVLNICAVKAPGFGDRRKAMLEDIAILTGGQVISE 303
Query: 333 EMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392
E+G L+ ++LG A ++ + KD+T I+ A ++ R+ +IR+ E T + +
Sbjct: 304 EIGNKLENTTMDMLGRAKRITVDKDNTTIIDGDGKEADIQGRVKQIRAQIEETTSDYDRE 363
Query: 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLS 452
L ER+A+L GG+A+++VGA T E+K+K+ R+EDAL+AT+AA++EGIV GGG + LR
Sbjct: 364 KLQERLAKLVGGVAVIKVGAATETEMKEKKARVEDALHATRAAVDEGIVPGGGVAYLRAL 423
Query: 453 AKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
A ++ + L E+Q G + KR+L P + IA+NAGV+G+ VVD+V K
Sbjct: 424 ASLDALS--LPTEQQ-FGVNVIKRSLEEPIRQIAQNAGVDGSIVVDKVKNSK 472
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| UNIPROTKB|Q9KNR7 groL1 "60 kDa chaperonin 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
Identities = 218/472 (46%), Positives = 335/472 (70%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
K+V F +D A K+ GV+++A+ V VTLGPKGRNVVL +G P I DG +V +EIE
Sbjct: 4 KDVRFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIE 61
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LED +N+G ++V++ ++ ND AGDG TT+ +LAQ ++ EG+K +AAGMNP+ + RGI+
Sbjct: 62 LEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGID 121
Query: 152 KTSKALLSELKLTSREVEDHE-LADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
K A + ELK S D + +A V +SA +D +VG +I++A+++VGR+GV+T+E+G+
Sbjct: 122 KAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQ 181
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
++ L++VEGM+FDRG+LSPYF+ +++ +VE + +LLVDKKI N +++ +L+
Sbjct: 182 ALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLVDKKISNIRELLPVLEGVA 241
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
K P++IVAED+E +ALA L+ N +RG++K AA+KAP FG+R+ L DIAILTGG+VI
Sbjct: 242 KASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGVVI 301
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390
+E+GL L+KA E LG A +V ITK+++ I+ +AA++ R+++IR E +
Sbjct: 302 SEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDYD 361
Query: 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450
K L ER+A+L+GG+A+++VGA T VE+K+K+ R+EDAL+AT+AA+EEG+V GGG +L+R
Sbjct: 362 KEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIR 421
Query: 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSA 502
++K+ + + DNEEQ +G + RA+ P + I KNAG + V + V A
Sbjct: 422 AASKLSSL--VGDNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNVRA 471
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| TIGR_CMR|VC_2664 VC_2664 "chaperonin, 60 Kd subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
Identities = 218/472 (46%), Positives = 335/472 (70%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
K+V F +D A K+ GV+++A+ V VTLGPKGRNVVL +G P I DG +V +EIE
Sbjct: 4 KDVRFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIE 61
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LED +N+G ++V++ ++ ND AGDG TT+ +LAQ ++ EG+K +AAGMNP+ + RGI+
Sbjct: 62 LEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGID 121
Query: 152 KTSKALLSELKLTSREVEDHE-LADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
K A + ELK S D + +A V +SA +D +VG +I++A+++VGR+GV+T+E+G+
Sbjct: 122 KAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQ 181
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
++ L++VEGM+FDRG+LSPYF+ +++ +VE + +LLVDKKI N +++ +L+
Sbjct: 182 ALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLVDKKISNIRELLPVLEGVA 241
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
K P++IVAED+E +ALA L+ N +RG++K AA+KAP FG+R+ L DIAILTGG+VI
Sbjct: 242 KASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGVVI 301
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390
+E+GL L+KA E LG A +V ITK+++ I+ +AA++ R+++IR E +
Sbjct: 302 SEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDYD 361
Query: 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450
K L ER+A+L+GG+A+++VGA T VE+K+K+ R+EDAL+AT+AA+EEG+V GGG +L+R
Sbjct: 362 KEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIR 421
Query: 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSA 502
++K+ + + DNEEQ +G + RA+ P + I KNAG + V + V A
Sbjct: 422 AASKLSSL--VGDNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNVRA 471
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2JKV7 | CH602_SYNJB | No assigned EC number | 0.5169 | 0.9194 | 0.8682 | yes | no |
| Q8YVS8 | CH602_NOSS1 | No assigned EC number | 0.5116 | 0.9194 | 0.8357 | yes | no |
| Q8R5X7 | CH60_FUSNN | No assigned EC number | 0.4894 | 0.9135 | 0.8627 | yes | no |
| B0CFQ6 | CH601_ACAM1 | No assigned EC number | 0.5074 | 0.9194 | 0.8387 | yes | no |
| Q9C667 | CPNB4_ARATH | No assigned EC number | 0.7733 | 0.9449 | 0.7872 | yes | no |
| Q0I885 | CH601_SYNS3 | No assigned EC number | 0.4755 | 0.9194 | 0.8462 | yes | no |
| A2C7E2 | CH602_PROM3 | No assigned EC number | 0.4755 | 0.9214 | 0.8315 | yes | no |
| B6J4T4 | CH60_COXB1 | No assigned EC number | 0.4613 | 0.9273 | 0.8550 | yes | no |
| Q119S1 | CH601_TRIEI | No assigned EC number | 0.5116 | 0.9214 | 0.8360 | yes | no |
| P12834 | CH601_SYNP6 | No assigned EC number | 0.4894 | 0.9194 | 0.8602 | yes | no |
| P22879 | CH60_SYNE7 | No assigned EC number | 0.4894 | 0.9194 | 0.8602 | yes | no |
| Q7MBB4 | CH602_GLOVI | No assigned EC number | 0.5 | 0.9194 | 0.8462 | yes | no |
| A1RNN6 | CH60_SHESW | No assigned EC number | 0.4829 | 0.9135 | 0.8532 | yes | no |
| B6J2I0 | CH60_COXB2 | No assigned EC number | 0.4613 | 0.9273 | 0.8550 | yes | no |
| P19421 | CH60_COXBU | No assigned EC number | 0.4613 | 0.9273 | 0.8550 | yes | no |
| Q3M6L5 | CH602_ANAVT | No assigned EC number | 0.5159 | 0.9194 | 0.8357 | yes | no |
| A8FQY1 | CH60_SHESH | No assigned EC number | 0.4787 | 0.9135 | 0.8469 | yes | no |
| Q2JXD4 | CH601_SYNJA | No assigned EC number | 0.5127 | 0.9194 | 0.8634 | yes | no |
| P0A337 | CH602_THEEB | No assigned EC number | 0.4989 | 0.9233 | 0.8655 | yes | no |
| A4Y398 | CH60_SHEPC | No assigned EC number | 0.4829 | 0.9135 | 0.8532 | yes | no |
| A9NA82 | CH60_COXBR | No assigned EC number | 0.4613 | 0.9273 | 0.8550 | yes | no |
| Q7V643 | CH601_PROMM | No assigned EC number | 0.4755 | 0.9194 | 0.8268 | yes | no |
| P21241 | RUBB_BRANA | No assigned EC number | 0.6632 | 0.9646 | 0.8350 | N/A | no |
| A5GNA9 | CH602_SYNPW | No assigned EC number | 0.4746 | 0.9233 | 0.8639 | yes | no |
| A9KC15 | CH60_COXBN | No assigned EC number | 0.4613 | 0.9273 | 0.8550 | yes | no |
| Q43831 | RUBB_SECCE | No assigned EC number | 0.6759 | 0.8487 | 0.8657 | N/A | no |
| P08927 | RUBB_PEA | No assigned EC number | 0.6832 | 0.9803 | 0.8386 | N/A | no |
| Q7TTX1 | CH601_SYNPX | No assigned EC number | 0.4736 | 0.9253 | 0.8658 | yes | no |
| Q3AHM4 | CH602_SYNSC | No assigned EC number | 0.4715 | 0.9253 | 0.8658 | yes | no |
| Q7NT31 | CH601_CHRVO | No assigned EC number | 0.4808 | 0.9135 | 0.8643 | yes | no |
| Q39ZP5 | CH60_GEOMG | No assigned EC number | 0.4684 | 0.9233 | 0.8608 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00021181001 | SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (616 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00030504001 | SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (97 aa) | • | • | 0.693 | ||||||
 | GSVIVG00023265001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (97 aa) | • | • | 0.657 | ||||||
 | GSVIVG00017271001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (97 aa) | • | • | 0.638 | ||||||
 | GSVIVG00007283001 | SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (682 aa) | • | • | • | 0.617 | |||||
 | GSVIVG00028120001 | RecName- Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; (289 aa) | • | • | 0.574 | ||||||
 | cpn21 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (256 aa) | • | • | • | • | • | 0.561 | |||
 | rpoC2 | RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6;; DNA-dependent RNA polymerase catalyzes [...] (692 aa) | • | • | 0.551 | ||||||
 | GSVIVG00018829001 | RecName- Full=ATP-dependent Clp protease proteolytic subunit; (291 aa) | • | • | 0.540 | ||||||
 | GSVIVG00000640001 | RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa) | • | 0.539 | |||||||
 | GSVIVG00028236001 | RecName- Full=Preprotein translocase secA subunit; (736 aa) | • | 0.533 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 509 | |||
| PLN03167 | 600 | PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr | 0.0 | |
| cd03344 | 520 | cd03344, GroEL, GroEL_like type I chaperonin | 0.0 | |
| PRK00013 | 542 | PRK00013, groEL, chaperonin GroEL; Reviewed | 0.0 | |
| PRK12849 | 542 | PRK12849, groEL, chaperonin GroEL; Reviewed | 0.0 | |
| TIGR02348 | 524 | TIGR02348, GroEL, chaperonin GroL | 0.0 | |
| PTZ00114 | 555 | PTZ00114, PTZ00114, Heat shock protein 60; Provisi | 1e-178 | |
| CHL00093 | 529 | CHL00093, groEL, chaperonin GroEL | 1e-172 | |
| PRK12850 | 544 | PRK12850, groEL, chaperonin GroEL; Reviewed | 1e-168 | |
| PRK12851 | 541 | PRK12851, groEL, chaperonin GroEL; Reviewed | 1e-167 | |
| PRK12852 | 545 | PRK12852, groEL, chaperonin GroEL; Reviewed | 1e-156 | |
| PRK14104 | 546 | PRK14104, PRK14104, chaperonin GroEL; Provisional | 1e-137 | |
| COG0459 | 524 | COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po | 1e-119 | |
| cd00309 | 464 | cd00309, chaperonin_type_I_II, chaperonin families | 2e-88 | |
| pfam00118 | 481 | pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami | 2e-84 | |
| cd03333 | 209 | cd03333, chaperonin_like, chaperonin_like superfam | 9e-23 | |
| TIGR02345 | 523 | TIGR02345, chap_CCT_eta, T-complex protein 1, eta | 1e-16 | |
| TIGR02343 | 532 | TIGR02343, chap_CCT_epsi, T-complex protein 1, eps | 1e-13 | |
| TIGR02339 | 519 | TIGR02339, thermosome_arch, thermosome, various su | 1e-12 | |
| cd03340 | 522 | cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I | 7e-12 | |
| TIGR02341 | 518 | TIGR02341, chap_CCT_beta, T-complex protein 1, bet | 1e-10 | |
| cd03336 | 517 | cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type | 7e-10 | |
| cd03339 | 526 | cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty | 1e-09 | |
| cd03338 | 515 | cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type | 2e-09 | |
| cd03343 | 517 | cd03343, cpn60, cpn60 chaperonin family | 3e-09 | |
| PTZ00212 | 533 | PTZ00212, PTZ00212, T-complex protein 1 subunit be | 1e-08 | |
| TIGR02342 | 517 | TIGR02342, chap_CCT_delta, T-complex protein 1, de | 2e-08 | |
| cd03341 | 472 | cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type | 2e-07 | |
| TIGR02347 | 531 | TIGR02347, chap_CCT_zeta, T-complex protein 1, zet | 3e-07 | |
| TIGR02340 | 536 | TIGR02340, chap_CCT_alpha, T-complex protein 1, al | 4e-07 | |
| TIGR02346 | 531 | TIGR02346, chap_CCT_theta, T-complex protein 1, th | 9e-07 | |
| cd03335 | 527 | cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type | 4e-06 | |
| TIGR02344 | 525 | TIGR02344, chap_CCT_gamma, T-complex protein 1, ga | 5e-06 | |
| cd03342 | 484 | cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type | 1e-05 | |
| cd03337 | 480 | cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type | 5e-05 |
| >gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Score = 701 bits (1811), Expect = 0.0
Identities = 335/489 (68%), Positives = 416/489 (85%), Gaps = 2/489 (0%)
Query: 14 KNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK 73
++ L + V A KE++FN DGSA KKLQAGV+ +A+LVGVTLGPKGRNVVL++K
Sbjct: 41 QSVRLRRSRSPKVKAA--KELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESK 98
Query: 74 YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEG 133
YG PKIVNDG TV KE+ELEDP+ENIG KLVRQA A+TNDLAGDG TTS++LAQGLIAEG
Sbjct: 99 YGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEG 158
Query: 134 VKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISD 193
VKV+AAG NPVQI RGIEKT+KAL+ ELK S+EVED ELADVAAVSAGN+Y VG MI++
Sbjct: 159 VKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAE 218
Query: 194 ALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD 253
A+ +VGR GVVT+E+GK EN+L +VEGM+FDRG++SPYFVTD +K +VE+ + KLLLVD
Sbjct: 219 AMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVD 278
Query: 254 KKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313
KKI N +D+ IL+ A++ YP++I+AEDIEQ+ALA L+ NKLRG LK AA+KAP FGER
Sbjct: 279 KKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGER 338
Query: 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEK 373
KS YLDDIAILTGG VIR+E+GL+LDK GKEVLGTA KVV+TKD+T IV DGST+ AV K
Sbjct: 339 KSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNK 398
Query: 374 RISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATK 433
R+++I++L E E+ ++K LNERIA+LSGG+A++QVGAQT ELK+K+LR+EDALNATK
Sbjct: 399 RVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATK 458
Query: 434 AAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNG 493
AA+EEGIVVGGGC+LLRL++KV+ IK+ L+N+EQK+GA+I KRALSYP KLIAKNAGVNG
Sbjct: 459 AAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNG 518
Query: 494 NFVVDQVSA 502
+ V ++V +
Sbjct: 519 SVVSEKVLS 527
|
Length = 600 |
| >gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Score = 607 bits (1569), Expect = 0.0
Identities = 240/474 (50%), Positives = 341/474 (71%), Gaps = 5/474 (1%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
K++ F + A K L GV+ +A+ V VTLGPKGRNVV++ +G PKI DG TV KEIE
Sbjct: 1 KDIKFGEE--ARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIE 58
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LEDP EN+G +LV++ ++TND+AGDG TT+ +LA+ +I EG+K +AAG NP+ + RGIE
Sbjct: 59 LEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIE 118
Query: 152 KTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
K +A++ ELK S+ V+ E+A VA +SA D +G++I++A+++VG++GV+T+E+GK
Sbjct: 119 KAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGK 178
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
E LE+VEGM+FDRG+LSPYFVTD +K VE + +LL DKKI + +++ IL+
Sbjct: 179 TLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
K P++I+AED+E +ALA L+ NKLRG LK A+KAP FG+R+ L+DIAILTGG VI
Sbjct: 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVI 298
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390
+E+GL L+ E LG A KVV+TKD T I+ +AA++ RI++IR E T +
Sbjct: 299 SEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYD 358
Query: 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450
K L ER+A+LSGG+A+++VG T VELK+K+ R+EDALNAT+AA+EEGIV GGG +LLR
Sbjct: 359 KEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLR 418
Query: 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
S ++ +K N ++K+G EI +RAL P + IA+NAGV+G+ VV++V
Sbjct: 419 ASPALDKLKA--LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESP 470
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Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520 |
| >gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 584 bits (1509), Expect = 0.0
Identities = 235/476 (49%), Positives = 338/476 (71%), Gaps = 5/476 (1%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M K++ F D A +KL GV+ +A+ V VTLGPKGRNVVL+ +G P I DG TV KE
Sbjct: 1 MAKDIKFGED--ARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKE 58
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELEDP EN+G +LV++ ++TND+AGDG TT+ +LAQ ++ EG+K +AAG NP+ + RG
Sbjct: 59 IELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRG 118
Query: 150 IEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
I+K +A + ELK S+ VED E+A VA +SA D +GK+I++A+++VG+ GV+T+E+
Sbjct: 119 IDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEE 178
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
K E LE+VEGM+FDRG+LSPYFVTD +K E + +L+ DKKI N +D+ +L+
Sbjct: 179 SKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQ 238
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
+ P++I+AED+E +ALA L+ NKLRG LK A+KAP FG+R+ L+DIAILTGG
Sbjct: 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGT 298
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
VI +E+GL L+ A E LG A KVV+TKD+T IV + A++ R+++I++ E T
Sbjct: 299 VISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSD 358
Query: 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSL 448
+ + L ER+A+L+GG+A+++VGA T VE+K+K+ R+EDAL+AT+AA+EEGIV GGG +L
Sbjct: 359 YDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVAL 418
Query: 449 LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
LR + +E +K N ++ G I RAL P + IA+NAG+ G+ VV++V K
Sbjct: 419 LRAAPALEALK--GLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK 472
|
Length = 542 |
| >gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 564 bits (1457), Expect = 0.0
Identities = 226/476 (47%), Positives = 336/476 (70%), Gaps = 5/476 (1%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M K + F+ + A + L+ GV+ +A+ V VTLGPKGRNVV+ +G P I DG ++ KE
Sbjct: 1 MAKIIKFDEE--ARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKE 58
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELEDP EN+G +LV++ ++TND+AGDG TT+ +LAQ L+ EG+K +AAG NP+ + RG
Sbjct: 59 IELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRG 118
Query: 150 IEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
I+K +A++ ELK +R V E+A VA +SA D +G++I++A+++VG++GV+T+E+
Sbjct: 119 IDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEE 178
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
K E LE+ EGM+FDRG+LSPYFVTD ++ D +LL DKKI + +D+ +L+
Sbjct: 179 SKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEK 238
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
+ P++I+AED+E +ALA L+ NKLRG LK AA+KAP FG+R+ L+DIAILTGG
Sbjct: 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGT 298
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
VI +++GL L++ + LG A +V ITKD+T IV + A+E R+++IR E T
Sbjct: 299 VISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSD 358
Query: 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSL 448
+ + L ER+A+L+GG+A+++VGA T VELK+++ R+EDALNAT+AA+EEGIV GGG +L
Sbjct: 359 YDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVAL 418
Query: 449 LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
LR + ++ + L N +Q G EI +RAL P + IA+NAG++G+ VV +V +
Sbjct: 419 LRAAKALDELAGL--NGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE 472
|
Length = 542 |
| >gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL | Back alignment and domain information |
|---|
Score = 543 bits (1402), Expect = 0.0
Identities = 235/474 (49%), Positives = 342/474 (72%), Gaps = 5/474 (1%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
K++ F+ + A K L GVD +A+ V VTLGPKGRNVVL+ +G P I DG TV KEIE
Sbjct: 2 KQIKFDEE--ARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIE 59
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LED EN+G +LV++ ++TND+AGDG TT+ +LAQ ++ EG+K +AAG NP+++ RGIE
Sbjct: 60 LEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIE 119
Query: 152 KTSKALLSELKLTSREVED-HELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
K +A++ ELK S+ V+ E+A VA +SA ND +G +I++A+++VG++GV+T+E+ K
Sbjct: 120 KAVEAVVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESK 179
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
E LE+VEGM+FDRG++SPYFVTD +K VE + +L+ DKKI N KD+ +L+
Sbjct: 180 SLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVA 239
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
+ P++I+AED+E +ALA L+ NKLRG L A+KAP FG+R+ L+DIAILTGG VI
Sbjct: 240 QSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVI 299
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390
+E+GL L++ + LG A KV + KD+T IV +AA++ R+++I++ E T +
Sbjct: 300 SEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYD 359
Query: 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450
+ L ER+A+L+GG+A+++VGA T E+K+K+LRIEDALNAT+AA+EEGIV GGG +LLR
Sbjct: 360 REKLQERLAKLAGGVAVIKVGAATETEMKEKKLRIEDALNATRAAVEEGIVPGGGVALLR 419
Query: 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
+A +EG+K D E++ IG +I KRAL P + IA+NAG++G V ++V K
Sbjct: 420 AAAALEGLKG--DGEDEAIGIDIVKRALEAPLRQIAENAGLDGAVVAEKVKELK 471
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118 [Protein fate, Protein folding and stabilization]. Length = 524 |
| >gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Score = 512 bits (1322), Expect = e-178
Identities = 227/474 (47%), Positives = 326/474 (68%), Gaps = 9/474 (1%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
KE+ F A + L G++ +A+ V VTLGPKGRNV+++ +YG PKI DG TV K IE
Sbjct: 15 KEIRFG--DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIE 72
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
D EN+G +L+RQ ++TND AGDG TT+ ILA+ + EG K +AAG+NP+ + RGI+
Sbjct: 73 FSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGID 132
Query: 152 KTSKALLSELKLTSREVEDHE-LADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
K +L LK SR V+ E + +VA +SA D +G +I+DA+ +VG++G +T+E GK
Sbjct: 133 LAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGK 192
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
E+ LE+VEGM FDRG++SPYFVT+ + + VE + +L+ DKKI + + + IL+ AV
Sbjct: 193 TLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAV 252
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGG-LV 329
K K P++I+AED+E +AL LI NKLRG LK A+KAP FG+ + L DIA+LTG +V
Sbjct: 253 KNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVV 312
Query: 330 IRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389
D +GL LD +LG+A KV +TKD T+I+T G +A +++R+ +RS E T +
Sbjct: 313 SEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEY 372
Query: 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLL 449
K L ER+A+LSGG+A+++VG + VE+ +K+ RIEDALNAT+AA+EEGIV GGG +LL
Sbjct: 373 DKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALL 432
Query: 450 RLSAKVEGIKELLDNE---EQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
R S ++ ++E DNE +Q+ G +I + AL PTK IA+NAGV G VV+++
Sbjct: 433 RASKLLDKLEE--DNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKI 484
|
Length = 555 |
| >gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL | Back alignment and domain information |
|---|
Score = 495 bits (1275), Expect = e-172
Identities = 233/476 (48%), Positives = 345/476 (72%), Gaps = 5/476 (1%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M K++ + + A + L+ G+D++AE V VTLGPKGRNVVL+ KYG P+IVNDG T+ KE
Sbjct: 1 MSKKILYQDN--ARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKE 58
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELED +EN GV L+RQA ++TND+AGDG TT+ +LA ++ +G+K +AAG NP+ + RG
Sbjct: 59 IELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRG 118
Query: 150 IEKTSKALLSELKLTSREVEDHE-LADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
IEK ++ ++S++ +R VED + + VA++SAGND VG MI+DA+++VGR GV+++E+
Sbjct: 119 IEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEE 178
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPK-DMFKILD 267
GK T LEI EGMRF++GF+SPYFVTD ++ V + +LL DKKI + D+ IL+
Sbjct: 179 GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILE 238
Query: 268 SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGG 327
K K P++I+AED+E++ALA L+ NKLRG++ A++AP FG+R+ L+DIAILTGG
Sbjct: 239 QVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGG 298
Query: 328 LVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEE 387
VI ++ GL+L+ ++LG A ++++TKDST I+ DG+ V+ R ++R EI +
Sbjct: 299 QVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIADGNEE-QVKARCEQLRKQIEIADS 357
Query: 388 RFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCS 447
++K L ER+A+LSGG+A+++VGA T E+KDK+LR+EDA+NATKAA+EEGIV GGG +
Sbjct: 358 SYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGAT 417
Query: 448 LLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503
L+ LS ++ + E++ IGA I RA+ P K IA+NAG NG+ ++++V
Sbjct: 418 LVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ 473
|
Length = 529 |
| >gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 487 bits (1255), Expect = e-168
Identities = 220/472 (46%), Positives = 333/472 (70%), Gaps = 5/472 (1%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
KE+ F+ D A +L GV+++A V VTLGPKGRNVVL+ +G P+I DG TV KE
Sbjct: 2 AAKEIRFSTD--ARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKE 59
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELED EN+G ++V++ ++TNDLAGDG TT+ +LAQ ++ EG K++AAGMNP+ + RG
Sbjct: 60 IELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRG 119
Query: 150 IEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
I+ A++ ELK +++V E+A VA +SA D ++G+MI++A+ +VG+ GV+T+E+
Sbjct: 120 IDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEE 179
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
K L++VEGM+FDRG+LSPYFVT+ +K E D +LL +KKI N +D+ IL++
Sbjct: 180 AKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA 239
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
V+ P++I+AED+E +ALA L+ NKLRG LK+ A+KAP FG+R+ L+DIA+LTGG
Sbjct: 240 VVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQ 299
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
VI +++G+ L+ ++LG A +V+ITK++T I+ + +E R+ +IR+ E T
Sbjct: 300 VISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSD 359
Query: 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSL 448
+ + L ER+A+L+GG+A+++VG T VE+K+K+ R++DAL+AT+AA+EEGIV GGG +L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVAL 419
Query: 449 LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
LR + + G+K N ++ G +I +RAL P + IA NAG G+ VV +V
Sbjct: 420 LRARSALRGLKGA--NADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKV 469
|
Length = 544 |
| >gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 482 bits (1242), Expect = e-167
Identities = 221/472 (46%), Positives = 334/472 (70%), Gaps = 5/472 (1%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
KEV F+ + A +K+ GV+++A+ V VTLGPKGRNVV+ +G P I NDG T+ KE
Sbjct: 2 AAKEVKFHVE--AREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKE 59
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELED EN+G ++VR+ ++TND+AGDG TT+ +LAQ ++ EG K +AAG NP+ + RG
Sbjct: 60 IELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRG 119
Query: 150 IEKTSKALLSELKLTSREVE-DHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
I++ A++ ELK +R V + E+A VA +SA D +G+++++A+++VG GV+T+E+
Sbjct: 120 IDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEE 179
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
K E LE+VEGM+FDRG+LSPYFVTD K E D +L+ +KKI N +D+ +L++
Sbjct: 180 SKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA 239
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
V+ P++I+AED+E +ALA L+ NKLRG LK AA+KAP FG+R+ L+DIAILTGG
Sbjct: 240 VVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGT 299
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
VI +++G+ L+ E LG A KVV+ K++T I+ ++ +E R+++IR+ E T
Sbjct: 300 VISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSD 359
Query: 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSL 448
+ + L ER+A+L+GG+A+++VGA T VE+K+K+ R++DAL+AT+AA+EEGIV GGG +L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVAL 419
Query: 449 LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
LR ++ ++ N +Q+ G EI +RAL P + IA+NAG G+ VV ++
Sbjct: 420 LRAVKALDKLETA--NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKL 469
|
Length = 541 |
| >gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Score = 455 bits (1171), Expect = e-156
Identities = 222/476 (46%), Positives = 329/476 (69%), Gaps = 5/476 (1%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
K+V F+ G A ++ GVD++A V VTLGPKGRNVV++ +G P+I DG TV KE
Sbjct: 2 AAKDVKFS--GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKE 59
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELED EN+G ++VR+ ++TNDLAGDG TT+ +LAQ ++ EG K +AAGMNP+ + RG
Sbjct: 60 IELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRG 119
Query: 150 IEKTSKALLSELKLTSREV-EDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
I+ A++ +++ ++ V E+A V +SA D +GKMI+ A+Q+VG GV+T+E+
Sbjct: 120 IDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEE 179
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
K E ++IVEGM+FDRG+LSPYFVT+ +K TVE D +LL +KK+ + M +L++
Sbjct: 180 NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA 239
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
V+ P++I+AED+E +ALA L+ N+LRG LK AA+KAP FG+R+ L+DIAILTGG
Sbjct: 240 VVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQ 299
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
+I +++G+ L+ ++LG A KVVI K++T IV +A +E R+ +I++ E T
Sbjct: 300 LISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSD 359
Query: 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSL 448
+ + L ER+A+L+GG+A+++VG T VE+K+K+ R+EDALNAT+AA++EGIV GGG +L
Sbjct: 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVAL 419
Query: 449 LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
LR V I DN + + G I +AL P + IA+NAGV G+ VV ++ +K
Sbjct: 420 LRAKKAVGRINN--DNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK 473
|
Length = 545 |
| >gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional | Back alignment and domain information |
|---|
Score = 406 bits (1045), Expect = e-137
Identities = 217/470 (46%), Positives = 332/470 (70%), Gaps = 5/470 (1%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
KEV F D A ++ GVD++A V VTLGPKGRNVVL +G P+I DG TV KEIE
Sbjct: 4 KEVKFGVD--ARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIE 61
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LED EN+G ++VR+ +++ D AGDG TT+ +LAQ ++ EG K +AAGMNP+ + RGI+
Sbjct: 62 LEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGID 121
Query: 152 KTSKALLSELKLTSREV-EDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
+A++++L S++V + E+A V +SA D +GK ++DA+++VG GV+T+E+ K
Sbjct: 122 LAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAK 181
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
E L++VEGM+FDRG++SPYFVT+ K VE D +L+ +KK+ + ++ +L++ V
Sbjct: 182 SLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVV 241
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
+ P+VIVAED+E +ALA L+ N+LRG LK AA+KAP FG+R+ L DIAILTGG I
Sbjct: 242 QTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAI 301
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390
+++G+ L+ ++LG A KV+I K++T IV +A +E R+++I++ E T +
Sbjct: 302 SEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYD 361
Query: 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450
+ L ER+A+L+GG+A+++VG T VE+K+++ R++DA++AT+AA+EEGIV GGG +LLR
Sbjct: 362 REKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLR 421
Query: 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500
S +++GIK N++QK G EI ++ALS P + IA NAG +G+ +V ++
Sbjct: 422 ASEQLKGIKT--KNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKI 469
|
Length = 546 |
| >gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 359 bits (924), Expect = e-119
Identities = 177/487 (36%), Positives = 275/487 (56%), Gaps = 40/487 (8%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M KE F D A + +A+ V TLGPKGRN +L + G I NDG T+LKE
Sbjct: 2 MGKERKFGED--ARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKE 59
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELE + G KL+ + + +D AGDG TT+++LA L+ E K+IAAG++P I RG
Sbjct: 60 IELE----HPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRG 115
Query: 150 IEKTSKALLSELKLTSREVEDHELAD------VAAVSAGNDYTVGKMISDALQQVGR--- 200
+ + ELK ++ V D E VA+ SA +D +G+++ +A+++VG+
Sbjct: 116 YRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQS 175
Query: 201 --NGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN 258
+G++ +++ +E LE+VEGM FD+G+LSPYF+ D++ +E + K+LL+DKK++
Sbjct: 176 DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKR---LE--NPKILLLDKKLEI 230
Query: 259 PKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL 318
K L+ + P++I+AED E +ALA L+ N LRG +KAP + YL
Sbjct: 231 KKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYL 289
Query: 319 DDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEI 378
+DIAILTG V ++++G L K G A V + KD T IV VE+
Sbjct: 290 EDIAILTGRRVKKEDLGERLAKLGG-----AKIVSVLKDLTTIVLGEGAAGLVEETK--- 341
Query: 379 RSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438
+ +K L ER A+ +GG+A + V T VEL +K+ RIEDALN +AA+EE
Sbjct: 342 -----TGDYDMEK--LQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEE 393
Query: 439 G-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVV 497
G IV GGG + + + ++ ++ ++++G E F RAL P + +A+NAG++ V+
Sbjct: 394 GKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVL 453
Query: 498 DQVSAHK 504
++ +
Sbjct: 454 SKLRSAH 460
|
Length = 524 |
| >gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 2e-88
Identities = 146/494 (29%), Positives = 224/494 (45%), Gaps = 106/494 (21%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
KE F + A +A+ V TLGPKG + +L + G P I NDG T+LKEIE
Sbjct: 1 KEREFGEE--ARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIE 58
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
+E + KL+ + +D GDG TT ++LA L+ E K++AAG++P +I RG E
Sbjct: 59 VE----HPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYE 114
Query: 152 KTSKALLSELK--LTSREVEDHE-LADVAAVSAG------NDYTVGKMISDALQQVGRN- 201
K + L LK +VED E L VA S D +G+++ DA+ +VG+
Sbjct: 115 KAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKEN 174
Query: 202 -----GVVTIEK--GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDK 254
GV+ +EK G E+S E+V GM FD+G+LSPY + K+LL+D
Sbjct: 175 GDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPYM-------PKRLENAKILLLDC 226
Query: 255 KIKNPKDMFKILDSAVKEKYPIVIVAED-IEQQALALLIRNKLRGVLKAAAIKAPAFGER 313
K++ V++AE I+ +AL L L A++
Sbjct: 227 KLEY------------------VVIAEKGIDDEALHYLA------KLGIMAVRR-----V 257
Query: 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITK---DSTLIVTDGSTRAA 370
+ L+ IA TG ++ LT + LGTA V TK + +
Sbjct: 258 RKEDLERIAKATGATIVSRLEDLTPED-----LGTAGLVEETKIGDEKYTFIEGCK---- 308
Query: 371 VEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALN 430
G +A + + T VEL + + + DAL
Sbjct: 309 -------------------------------GGKVATILLRGATEVELDEAERSLHDALC 337
Query: 431 ATKAAIEE-GIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNA 489
A +AA+E+ GIV GGG + + LS +E + + L ++++G E F AL + +A+NA
Sbjct: 338 AVRAAVEDGGIVPGGGAAEIELSKALEELAKTL-PGKEQLGIEAFADALEVIPRTLAENA 396
Query: 490 GVNGNFVVDQVSAH 503
G++ VV ++ A
Sbjct: 397 GLDPIEVVTKLRAK 410
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464 |
| >gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 269 bits (689), Expect = 2e-84
Identities = 143/489 (29%), Positives = 222/489 (45%), Gaps = 104/489 (21%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+A+ V TLGPKGRN +L N G I NDG T+LKEIE++ P KL+ +A +
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPA----AKLLVEAAKSQD 56
Query: 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-- 170
+ GDG TT+++LA L+ E K+I AG++P I RG E + L L+ S V D
Sbjct: 57 EEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDD 116
Query: 171 HELADVAAVSAGNDYT------VGKMISDALQ------QVGRNGVVTIEKGKCTENSLEI 218
+L +VA S + + +GK++ DA+ VG GV+ IE G E+S E+
Sbjct: 117 EDLLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGS-LEDS-EL 174
Query: 219 VEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKD----------------- 261
+EG+ D+G+LSP + K+LL+D ++ K
Sbjct: 175 IEGIVLDKGYLSP-------DMPKRLENPKILLLDCPLEYEKTEKVIISTAEELERLLEA 227
Query: 262 ----MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317
+ +L+ V +VI+ + I+ AL L +N + + + K
Sbjct: 228 EEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRV-----------KKED 276
Query: 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKV---VITKDSTLIVTDGSTRAAVEKR 374
L+ +A TG V+ L + LG+A KV I +D T +
Sbjct: 277 LERLAKATGATVVSSLDDLE-----PDELGSAGKVEEREIGEDKTTFIEGC--------- 322
Query: 375 ISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKA 434
LSG +A + + T EL + + IEDALNA KA
Sbjct: 323 --------------------------LSGKVATILLRGATDHELDELERAIEDALNAVKA 356
Query: 435 AIE-EGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNG 493
A++ EG+V GGG + L LS + + + +EQ +G E F AL + +A+NAG++
Sbjct: 357 ALKDEGVVPGGGAAELELSRALREYAKSVSGKEQ-LGIEAFAEALEVIPRTLAENAGLDP 415
Query: 494 NFVVDQVSA 502
V+ ++ A
Sbjct: 416 IEVLAKLKA 424
|
This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481 |
| >gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 9e-23
Identities = 70/281 (24%), Positives = 107/281 (38%), Gaps = 88/281 (31%)
Query: 172 ELADVAAVSAG-----NDYTVGKMISDALQQVGRN------GVVTIEK--GKCTENSLEI 218
L VA S D +GK++ DA+ +VG + GV+ +EK G E+S E+
Sbjct: 3 LLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-EL 61
Query: 219 VEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVI 278
V G+ FD+G+ SPY + K+LL+D ++ V+
Sbjct: 62 VVGVVFDKGYASPYM-------PKRLENAKILLLDCPLEY------------------VV 96
Query: 279 VAED-IEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLT 337
+AE I+ AL L + A++ K L+ IA TG ++ LT
Sbjct: 97 IAEKGIDDLALHYLAK------AGIMAVRR-----VKKEDLERIARATGATIVSSLEDLT 145
Query: 338 LDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNER 397
+ LGTA V TK +T I +
Sbjct: 146 PED-----LGTAELVEETKIGEEKLT----------FIEGCK------------------ 172
Query: 398 IARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438
G A + + T VEL + + + DAL A +AA+EE
Sbjct: 173 ----GGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209 |
| >gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 1e-16
Identities = 113/465 (24%), Positives = 203/465 (43%), Gaps = 69/465 (14%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+AE + TLGP+G + ++ G + NDG T+LK +++ P V + + +
Sbjct: 30 IAEALKTTLGPRGMDKLIVGSNGKATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEV- 88
Query: 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK-----LTSRE 167
GDG T+ +ILA L+ E I G++P I RG + + ++K + S +
Sbjct: 89 ---GDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRGYREALSLAIEKIKEIAVTIDSEK 145
Query: 168 VEDHELADVAAVSAGND-------YTVGKMISDALQQVGRN-------GVVTIEKGKCTE 213
E EL + A +A + KMI DA+ + R+ GV ++ G +
Sbjct: 146 GEQRELLEKCAATALSSKLIAHNKEFFSKMIVDAVLSLDRDDLDLKLIGVKKVQGGALED 205
Query: 214 NSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLL--VDKKIKNPKDMFKILDSAVK 271
+ L V G+ F + F Y ++Q + +F + K+LL V+ ++K KD +I V+
Sbjct: 206 SVL--VNGVAFKKTF--SYAGFEQQPK--KFANPKILLLNVELELKAEKDNAEIRVEDVE 259
Query: 272 EKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA---IKAPAFGERKSHYLDDIAILTGGL 328
+ IV D E +I KLR ++++ A + G+ + Y D I G
Sbjct: 260 DYQAIV----DAEWA----IIFEKLRKIVESGANIVLSKLPIGDLATQYFADHNIFCAGR 311
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
V ++M + G + T + L T A E+R +I ER
Sbjct: 312 VSAEDMKRVIKACGGSIQST---TSDLEADVL-----GTCALFEER--------QIGSER 355
Query: 389 FQ--KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGC 446
+ + + + IL+ GA+ +E ++ L DA+ + A++ +V GG
Sbjct: 356 YNLFTGCPHAKTCTI-----ILRGGAEQFIEEAERSL--HDAIMIVRRALKNKKIVAGGG 408
Query: 447 SL-LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAG 490
++ + LS + + +D ++Q I F +AL + + +NAG
Sbjct: 409 AIEMELSKCLRDYSKTIDGKQQLI-INAFAKALEVIPRQLCENAG 452
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523 |
| >gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 103/484 (21%), Positives = 193/484 (39%), Gaps = 102/484 (21%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA ++ +LGPKG + +L + G + NDG T+L ++++++P+ + V+L + +
Sbjct: 39 VASILRTSLGPKGMDKMLISPDGDITVTNDGATILSQMDVDNPIAKLMVELSKS----QD 94
Query: 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHE 172
D GDG T ++LA L+ + +++ G++P++IA G E+ ++ + L+ S E+
Sbjct: 95 DEIGDGTTGVVVLAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVEHLEEISDEISADN 154
Query: 173 LADVAAVSAGNDYTVGKMIS---DALQQVGRNGVVTI----------------EKGKCTE 213
+ A K++S ++ + V+ + K +
Sbjct: 155 NNREPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLNVADMERRDVDFDLIKVEGKVGGSL 214
Query: 214 NSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPK------------D 261
++++G+ D+ F P + + V+ D K+ ++ + PK +
Sbjct: 215 EDTKLIKGIIIDKDFSHP-----QMPKEVK--DAKIAILTCPFEPPKPKTKHKLDISSVE 267
Query: 262 MFKILDSAVKEKYP------------IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA 309
+K L ++K+ IVI + +A LL++N L PA
Sbjct: 268 EYKKLQKYEQQKFKEMIDDIKKSGANIVICQWGFDDEANHLLLQNDL-----------PA 316
Query: 310 FGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRA 369
L+ IAI TGG ++ L+ DK GK L I TKD L++
Sbjct: 317 VRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTKDRMLVIEQCKNSK 376
Query: 370 AVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDAL 429
AV I G ++ +++ + I DAL
Sbjct: 377 AV----------------------------------TIFIRGGNKMI-IEEAKRSIHDAL 401
Query: 430 NATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKN 488
+ I++ IV GGG + + S V + EQ F AL +A+N
Sbjct: 402 CVVRNLIKDSRIVYGGGAAEISCSLAVSQEADKYSGVEQY-AIRAFADALETIPMALAEN 460
Query: 489 AGVN 492
+G++
Sbjct: 461 SGLD 464
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532 |
| >gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 114/485 (23%), Positives = 203/485 (41%), Gaps = 108/485 (22%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VAE V TLGP+G + +L + G I NDG T+LKE+++E P K++ + +
Sbjct: 28 VAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQD 83
Query: 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK--LTSREVED 170
+ GDG TT+++LA L+ + ++ ++P I G K ++ L + T ED
Sbjct: 84 EEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIEGYRKAAEKALEIIDEIATKISPED 143
Query: 171 HE-LADVA-------AVSAGNDYTVGKMISDALQQV------GRNGV----VTIEK--GK 210
+ L VA A + + ++ +A++QV G+ V + I K G
Sbjct: 144 RDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQVAELRGDGKYYVDLDNIKIVKKTGG 203
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDK-------------KIK 257
+++ E+VEG+ D+ + P KR + K+ L+D +I
Sbjct: 204 SIDDT-ELVEGIVVDKEVVHP----GMPKR---VENAKIALLDAPLEVEKTEIDAEIRIT 255
Query: 258 NPKDMFKILD---SAVKEKYP--------IVIVAEDIEQQALALLIRNKLRGVLKAAAIK 306
+P + K LD + +KE +VI + I+ A L + G+L
Sbjct: 256 DPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQHYLAK---AGIL------ 306
Query: 307 APAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGS 366
A K ++ +A TG ++ +D+ + LG A V
Sbjct: 307 --AVRRVKKSDIEKLARATGARIVSS-----IDEITESDLGYAGLV-------------- 345
Query: 367 TRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIE 426
E R + E K + E +L+ G + VV+ ++ ++
Sbjct: 346 ----------EERKVGE------DKMVFVEGCKNPKAVTILLRGGTEHVVDELERS--LQ 387
Query: 427 DALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLI 485
DAL+ +A+E+G +V GGG + ++ ++ + EQ + E F AL +++
Sbjct: 388 DALHVVASALEDGKVVAGGGAVEIEIALRLRSYARKIGGREQ-LAIEAFADALEEIPRIL 446
Query: 486 AKNAG 490
A+NAG
Sbjct: 447 AENAG 451
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519 |
| >gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 7e-12
Identities = 109/466 (23%), Positives = 195/466 (41%), Gaps = 71/466 (15%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+A+ V TLGP+G + ++ + G I NDG T+LK +++ P V + A++
Sbjct: 28 IADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDI-----AKSQ 82
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEK-TSKAL--LSELKLTSREV 168
D GDG T+ ++LA + E I G++P I RG K A+ + E+ + +
Sbjct: 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKE 142
Query: 169 EDHELADV----AAVS------AGNDYTVGKMISDALQQVGRN------GVVTIEKGKCT 212
+ E ++ AA + A KM+ DA+ + + G+ + G
Sbjct: 143 DKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE 202
Query: 213 ENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLL--VDKKIKNPKDMFKILDSAV 270
++ L V G+ F + F F +K F + K+LL V+ ++K KD ++
Sbjct: 203 DSQL--VNGVAFKKTFSYAGFEQQPKK----FKNPKILLLNVELELKAEKDNAEVRVEDP 256
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA---IKAPAFGERKSHYLDDIAILTGG 327
+E IV D E + +I +KL ++K+ A + G+ + Y D I G
Sbjct: 257 EEYQAIV----DAEWK----IIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAG 308
Query: 328 LVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEE 387
V +++ G + T V D L T E+R ++ E
Sbjct: 309 RVPEEDLKRVAQATGGSIQTT---VSNITDDVL-----GTCGLFEER--------QVGGE 352
Query: 388 RFQ--KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGG 445
R+ + + IL+ GA+ +E ++ L DA+ + AI+ VV GG
Sbjct: 353 RYNIFTGCPKAKTCTI-----ILRGGAEQFIEEAERSL--HDAIMIVRRAIKNDSVVAGG 405
Query: 446 CSL-LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAG 490
++ + LS + + ++Q + F +AL + + NAG
Sbjct: 406 GAIEMELSKYLRDYSRTIAGKQQLV-INAFAKALEIIPRQLCDNAG 450
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522 |
| >gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 117/470 (24%), Positives = 204/470 (43%), Gaps = 58/470 (12%)
Query: 53 VAELVGVTLGPKGRNVVLQ-NKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111
V +LV TLGPKG + +LQ + NDG T+LK I L++P + V + +
Sbjct: 26 VGDLVKSTLGPKGMDKILQSASSNTIMVTNDGATILKSIGLDNPAAKVLVNISKV----Q 81
Query: 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH 171
+D GDG T+ +LA L+ E K+I ++P I G +KA L L ++ +
Sbjct: 82 DDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEGYRLATKAALDALTKSAVDNSSD 141
Query: 172 E------LADVAAVSAGNDYTVGKMIS---DALQQVGRNGVVTIEKGKCTENSLEIVE-- 220
+ L ++A + + K++S D Q+ + V+ + KG +++I++
Sbjct: 142 KTKFREDLINIARTTLSS-----KILSQHKDHFAQLAVDAVLRL-KGSTNLEAIQIIKIL 195
Query: 221 GMRFDRGFLSPYFVTDR-----QKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYP 275
G + FL F+ + Q + +E + K+L+ + + D KI S V+
Sbjct: 196 GGKLSDSFLDEGFILAKKIGVNQPKRIE--NAKILIANTTMDT--DKVKIFGSRVRVD-S 250
Query: 276 IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMG 335
+AE ++A ++ K+ +LK F R+ Y + ++ E
Sbjct: 251 TAKLAE--LEKAEREKMKEKVEKILKHG---INCFINRQLIYNYPEQLFADAGIMSIEHA 305
Query: 336 LTLDKAGKEVLG--TAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNI 393
D G E L T ++V T D +V GS I EI I E++
Sbjct: 306 ---DFEGVERLALVTGGEIVSTFDHPELVKLGSC-----DLIEEIM----IGEDKL---- 349
Query: 394 LNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLS 452
L + I+ GA T L + + + DAL ++E V+GGGC+ + +S
Sbjct: 350 LKFSGVKAGEACTIVLRGA-TQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMS 408
Query: 453 AKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSA 502
V+ + + ++ + E F RAL ++A NAG + + +V Q+ A
Sbjct: 409 KAVDTEAQNIPGKK-ALAVEAFARALRQLPTILADNAGFDSSELVAQLRA 457
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518 |
| >gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 48 AGVDLVAELVGVTLGPKGRNVVLQ--NKYGPPKIVNDGETVLKEIELEDPLENIGVKLVR 105
G + +LV TLGPKG + +LQ + G + NDG T+LK I +++P + V + +
Sbjct: 20 VGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISK 79
Query: 106 QAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK 162
+D GDG T+ +LA L+ E K++A ++P I G + A L
Sbjct: 80 V----QDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALL 132
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517 |
| >gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 33/120 (27%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA ++ +LGP+G + +L + G + NDG T+L++++++ + KL+ + +
Sbjct: 35 VANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQD 90
Query: 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHE 172
D GDG T ++LA L+ + K++ G++P++IA G E+ K + L+ + ++E
Sbjct: 91 DEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP 150
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526 |
| >gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA+ + +LGP+G + ++Q G I NDG T+LK++ + P + V+L ++
Sbjct: 20 VADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVEL-----SKAQ 74
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE 169
D+ AGDG T+ ++LA L++ ++ G++P I+ + +K + L S V+
Sbjct: 75 DIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVD 132
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515 |
| >gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VAE V TLGPKG + +L + G I NDG T+LKE+++E P K++ + +
Sbjct: 27 VAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQD 82
Query: 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK 162
+ GDG TT+++LA L+ + ++ ++P I G ++ L L
Sbjct: 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLD 132
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517 |
| >gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 53 VAELVGVTLGPKGRNVVLQ-----NKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQA 107
VA+LV TLGPKG + +LQ + G + NDG T+LK + L++P I V + +
Sbjct: 34 VADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKT- 92
Query: 108 GARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSRE 167
++ GDG T+ ++LA L+ E K++ ++P I G L+ + +
Sbjct: 93 ---QDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFD 149
|
Length = 533 |
| >gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA+ + +LGPKG + ++Q+ G I NDG T+LK++ + P + V+L ++
Sbjct: 21 VADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVLHPAAKMLVEL-----SKAQ 75
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-- 169
D+ AGDG T+ +ILA L+ +++ G++P I+ + + + L S V+
Sbjct: 76 DIEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEAIKILDEMSIPVDLS 135
Query: 170 DHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTEN 214
D E +A ++ + V + S L + + V+ + + +N
Sbjct: 136 DREQLLKSATTSLSSKVVSQY-SSLLAPLAVDAVLKVIDPENAKN 179
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517 |
| >gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 44 KKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKL 103
+ ++A +L +++ + GP G N ++ N + +D T+L+E+E++ P KL
Sbjct: 12 RNIEACKEL-SQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHP----AAKL 66
Query: 104 VRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSEL-K 162
+ A + GDG ++LA L+ + +++ G++P +I G EK K L L +
Sbjct: 67 LVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEE 126
Query: 163 LTSREVEDHELADVAAVSA-----------GNDYTVGKMISDALQQV 198
L ++ED L + VS GN+ + ++++A V
Sbjct: 127 LVVYKIED--LRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISV 171
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472 |
| >gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Query: 61 LGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCT 120
LGPKG +L + G K+ DG +L E++++ P + ++ +A +++ GDG T
Sbjct: 36 LGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTAS----MIARAATAQDEITGDGTT 91
Query: 121 TSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSEL----KLTSREVEDHELADV 176
+++IL L+ + + I G++P I G E K LL L T EV+ L +V
Sbjct: 92 STVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDKFKVKTEDEVDREFLLNV 151
Query: 177 AAVSAGNDYTVG------KMISDALQQVGRNG----VVTIEKGKCTENS---LEIVEGMR 223
A S + +++ DA+ + ++G + +E + S ++ G+
Sbjct: 152 ARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEDIDLFMVEIMEMKHKSATDTTLIRGLV 211
Query: 224 FDRGFLSP 231
D G P
Sbjct: 212 LDHGARHP 219
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA +V +LGP G + +L + G I NDG T+LK +E+E P I V+L + +
Sbjct: 24 VANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQL----QD 79
Query: 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
GDG T+ +I+A L+ +++ ++P I G
Sbjct: 80 REVGDGTTSVVIIAAELLKRANELVKNKVHPTSIISG 116
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 |
| >gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 37 NHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPL 96
+ + K ++A +L +++ +LGP G N ++ N + ND T+L+E+E++ P
Sbjct: 15 GLEEAVIKNIEACKEL-SQITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHP- 72
Query: 97 ENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKA 156
KL+ A + GDG I+LA L+ + ++I G++P +I +G E K
Sbjct: 73 ---AAKLLVMASEMQENEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKGYEMALKK 129
Query: 157 LLSEL-KLTSREVED 170
+ L +L E+ED
Sbjct: 130 AMEVLEELVVWEIED 144
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 |
| >gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+A +V +LGP G + +L + G I NDG T+LK +E+E P I V+L + +
Sbjct: 20 IANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQL----QD 75
Query: 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
GDG T+ +I+A L+ +++ ++P I G
Sbjct: 76 KEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISG 112
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527 |
| >gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA+++ TLGP+ +L + G + NDG +L+EI++ P ++L +RT
Sbjct: 28 VADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIEL-----SRTQ 82
Query: 113 D-LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH 171
D GDG T+ IILA +++ + ++P I R +K LS L+ S V+ +
Sbjct: 83 DEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVN 142
Query: 172 ELADVAAV 179
+ A + +
Sbjct: 143 DDAAMLKL 150
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525 |
| >gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 41 SATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIG 100
SA K LQ +++ LGPKG +L + G K+ DG +L E++++ P ++
Sbjct: 19 SAAKGLQ-------DVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASM- 70
Query: 101 VKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSE 160
+ R A A+ +D+ GDG T++++L L+ + + I G++P I G E L
Sbjct: 71 --IARAATAQ-DDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKF 127
Query: 161 LKLTSREVE 169
L+ VE
Sbjct: 128 LESFKVPVE 136
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484 |
| >gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA+++ LGP+ +L + G + NDG +L+EI++ P ++L +RT
Sbjct: 28 VADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIEL-----SRTQ 82
Query: 113 D-LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK 162
D GDG T+ IILA ++A + G++P I + K + L L+
Sbjct: 83 DEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILE 133
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 509 | |||
| PLN03167 | 600 | Chaperonin-60 beta subunit; Provisional | 100.0 | |
| PRK00013 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12849 | 542 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PRK12852 | 545 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| PTZ00114 | 555 | Heat shock protein 60; Provisional | 100.0 | |
| PRK12850 | 544 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| TIGR02348 | 524 | GroEL chaperonin GroL. This family consists of Gro | 100.0 | |
| cd03344 | 520 | GroEL GroEL_like type I chaperonin. Chaperonins ar | 100.0 | |
| PRK12851 | 541 | groEL chaperonin GroEL; Reviewed | 100.0 | |
| CHL00093 | 529 | groEL chaperonin GroEL | 100.0 | |
| PRK14104 | 546 | chaperonin GroEL; Provisional | 100.0 | |
| KOG0356 | 550 | consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ | 100.0 | |
| TIGR02339 | 519 | thermosome_arch thermosome, various subunits, arch | 100.0 | |
| cd03343 | 517 | cpn60 cpn60 chaperonin family. Chaperonins are inv | 100.0 | |
| TIGR02347 | 531 | chap_CCT_zeta T-complex protein 1, zeta subunit. M | 100.0 | |
| cd03342 | 484 | TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| cd03339 | 526 | TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha | 100.0 | |
| cd03335 | 527 | TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| TIGR02343 | 532 | chap_CCT_epsi T-complex protein 1, epsilon subunit | 100.0 | |
| KOG0361 | 543 | consensus Chaperonin complex component, TCP-1 eta | 100.0 | |
| TIGR02344 | 525 | chap_CCT_gamma T-complex protein 1, gamma subunit. | 100.0 | |
| cd03340 | 522 | TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero | 100.0 | |
| TIGR02340 | 536 | chap_CCT_alpha T-complex protein 1, alpha subunit. | 100.0 | |
| cd03338 | 515 | TCP1_delta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| PTZ00212 | 533 | T-complex protein 1 subunit beta; Provisional | 100.0 | |
| TIGR02345 | 522 | chap_CCT_eta T-complex protein 1, eta subunit. Mem | 100.0 | |
| TIGR02342 | 517 | chap_CCT_delta T-complex protein 1, delta subunit. | 100.0 | |
| COG0459 | 524 | GroL Chaperonin GroEL (HSP60 family) [Posttranslat | 100.0 | |
| cd03337 | 480 | TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| cd03336 | 517 | TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper | 100.0 | |
| TIGR02346 | 531 | chap_CCT_theta T-complex protein 1, theta subunit. | 100.0 | |
| TIGR02341 | 519 | chap_CCT_beta T-complex protein 1, beta subunit. M | 100.0 | |
| cd00309 | 464 | chaperonin_type_I_II chaperonin families, type I a | 100.0 | |
| cd03341 | 472 | TCP1_theta TCP-1 (CTT or eukaryotic type II) chape | 100.0 | |
| KOG0358 | 534 | consensus Chaperonin complex component, TCP-1 delt | 100.0 | |
| PF00118 | 485 | Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon | 100.0 | |
| KOG0363 | 527 | consensus Chaperonin complex component, TCP-1 beta | 100.0 | |
| KOG0360 | 545 | consensus Chaperonin complex component, TCP-1 alph | 100.0 | |
| KOG0362 | 537 | consensus Chaperonin complex component, TCP-1 thet | 100.0 | |
| KOG0364 | 527 | consensus Chaperonin complex component, TCP-1 gamm | 100.0 | |
| KOG0359 | 520 | consensus Chaperonin complex component, TCP-1 zeta | 100.0 | |
| KOG0357 | 400 | consensus Chaperonin complex component, TCP-1 epsi | 100.0 | |
| cd03333 | 209 | chaperonin_like chaperonin_like superfamily. Chape | 99.96 | |
| cd03334 | 261 | Fab1_TCP TCP-1 like domain of the eukaryotic phosp | 99.95 | |
| KOG0230 | 1598 | consensus Phosphatidylinositol-4-phosphate 5-kinas | 99.16 | |
| COG0459 | 524 | GroL Chaperonin GroEL (HSP60 family) [Posttranslat | 97.39 |
| >PLN03167 Chaperonin-60 beta subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-102 Score=845.54 Aligned_cols=482 Identities=69% Similarity=1.031 Sum_probs=464.4
Q ss_pred CcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHH
Q 010494 25 SVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLV 104 (509)
Q Consensus 25 ~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll 104 (509)
.+.+.|+|+|.||.+-+||+.+++|+..|+++|++||||+||+|||++++|+++|||||+||+|+|+++||++|+||+|+
T Consensus 50 ~~~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll 129 (600)
T PLN03167 50 SPKVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLV 129 (600)
T ss_pred CchhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHH
Confidence 36667899999993117999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHhhhhcCCc
Q 010494 105 RQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND 184 (509)
Q Consensus 105 ~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~l~~va~ts~~~~ 184 (509)
+++|++||+++||||||++||+++||+++.+++++|+||..|++||++|.+.++++|+++++++++.+|.++|++|++++
T Consensus 130 ~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~ 209 (600)
T PLN03167 130 RQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNN 209 (600)
T ss_pred HHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999997668999999999999
Q ss_pred hhhhhHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHH
Q 010494 185 YTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFK 264 (509)
Q Consensus 185 ~~l~~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~ 264 (509)
+.|++++++|+.+++++|.|.+++|++++|++++++|++|+++|.||||.+++++|+++++||+|+++|++|++++++.+
T Consensus 210 ~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~ 289 (600)
T PLN03167 210 YEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIG 289 (600)
T ss_pred HHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHH
Confidence 99999999999999998999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCcc
Q 010494 265 ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKE 344 (509)
Q Consensus 265 ~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~ 344 (509)
+++++.+.|.|+||++++|+++++++|+.|+++|..+|+|||+|+||+.++++|+|||++|||+++++++++++++++++
T Consensus 290 ~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~ 369 (600)
T PLN03167 290 ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKE 369 (600)
T ss_pred HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHH
Q 010494 345 VLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLR 424 (509)
Q Consensus 345 ~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~ 424 (509)
+||+|++|++.+++|+++++.++++.+++|+..++..+++++++|++++|++|+++|++++++|+|||+|+.+++|++|+
T Consensus 370 ~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~ 449 (600)
T PLN03167 370 VLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLR 449 (600)
T ss_pred HCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 425 IEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 425 ~~dAl~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
++||++++|+++++|+|||||++|++++.+|++++...++++|+++++++++||+.||++||+|||+|+.+++.+|++.+
T Consensus 450 i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~ 529 (600)
T PLN03167 450 VEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSND 529 (600)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988778899999899999999999999999999999999999998544
Q ss_pred CC
Q 010494 505 CI 506 (509)
Q Consensus 505 ~~ 506 (509)
+.
T Consensus 530 ~~ 531 (600)
T PLN03167 530 NP 531 (600)
T ss_pred CC
Confidence 43
|
|
| >PRK00013 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-101 Score=835.95 Aligned_cols=473 Identities=49% Similarity=0.806 Sum_probs=453.1
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|++.|| +++|..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~ 78 (542)
T PRK00013 1 MAKDIKFG--EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVAS 78 (542)
T ss_pred CCchhhch--HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 56899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++. +|.++|+||+++++.++
T Consensus 79 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls 158 (542)
T PRK00013 79 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
+++++|+..++++|.|.++.+....+.+++++|++|+++|.+|||.+++++|+++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~ 238 (542)
T PRK00013 159 KLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQ 238 (542)
T ss_pred HHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHH
Confidence 99999999999888887765544444459999999999999999999988999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++++++|+.|+++|+++|+|||+|+||+.++++|+|||++|||++++++.+++++++++++||+
T Consensus 239 i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK00013 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQ 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.+++++++|++|++|++++.+..|++.++.+++++.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||
T Consensus 319 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Da 398 (542)
T PRK00013 319 AKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDA 398 (542)
T ss_pred eeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccCC
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCI 506 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~~~ 506 (509)
+|++|+++++|+|||||++|+++|.+|+++ ...++.+| +++++|++||+.||++||+|||+|+.+++++|++.+++
T Consensus 399 l~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~ 474 (542)
T PRK00013 399 LHATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDEA-TGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGK 474 (542)
T ss_pred HHHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Confidence 999999999999999999999999999988 56667777 58999999999999999999999999999999886544
|
|
| >PRK12849 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-101 Score=834.12 Aligned_cols=471 Identities=48% Similarity=0.797 Sum_probs=456.3
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|.|.|| ++++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||.+|+||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~ 78 (542)
T PRK12849 1 MAKIIKFD--EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVAS 78 (542)
T ss_pred CCccccch--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHH
Confidence 56899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|+++++|+++. +|.++|+||+++++.++
T Consensus 79 ~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~ 158 (542)
T PRK12849 79 KTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
+++++|+..++++|.+.+++|++++|++++++|++|+++|.+|+|.++.++|+++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~ 238 (542)
T PRK12849 159 ELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEK 238 (542)
T ss_pred HHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHH
Confidence 99999999999888888889999998669999999999999999999888999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++|+++|..|+++|.++|+|||+|+|+++++++|+|||.+|||++++++.+.+++++++++||+
T Consensus 239 i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK12849 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGR 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988887899999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.|++++++|+++++|++++++..|+++++++++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||
T Consensus 319 ~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DA 398 (542)
T PRK12849 319 AKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDA 398 (542)
T ss_pred eeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
+|++++++++|||||||++|+++|.+|.+++ ..++.+| +++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 399 l~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~ 472 (542)
T PRK12849 399 LNATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQA-AGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE 472 (542)
T ss_pred HHHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999988 6777777 589999999999999999999999999999998764
|
|
| >PRK12852 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-101 Score=831.56 Aligned_cols=473 Identities=47% Similarity=0.786 Sum_probs=455.4
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|+|.|| +++|+.|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||++++||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~ 79 (545)
T PRK12852 2 AAKDVKFS--GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVAS 79 (545)
T ss_pred Ccchhhcc--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHh
Confidence 47999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. ++.++|++|+++++.|+
T Consensus 80 ~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (545)
T PRK12852 80 KTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIG 159 (545)
T ss_pred hcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
+++++|+.+++++|.|.+..|++..+.+++++|++|+++|.+|||++++++|+..++||+|+++|++|++++++.++++.
T Consensus 160 ~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~ 239 (545)
T PRK12852 160 KMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA 239 (545)
T ss_pred HHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHH
Confidence 99999999999999999888888755559999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.+.+++++++++||+
T Consensus 240 i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~ 319 (545)
T PRK12852 240 VVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGR 319 (545)
T ss_pred HHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.+++++++|++++++++++.+.+|+++++++++++.++|++++|++|++||+++++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (545)
T PRK12852 320 AKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDA 399 (545)
T ss_pred CcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccCC
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCI 506 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~~~ 506 (509)
+|++++++++|||||||++|++++.+|.+++.. ++.+| +++++|++||+.||++||+|||+|+.+++++|++.+++
T Consensus 400 l~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~q-~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~ 475 (545)
T PRK12852 400 LNATRAAVQEGIVPGGGVALLRAKKAVGRINND-NADVQ-AGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSE 475 (545)
T ss_pred HHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-CcHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Confidence 999999999999999999999999999988765 56666 69999999999999999999999999999999875543
|
|
| >PTZ00114 Heat shock protein 60; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-101 Score=832.53 Aligned_cols=476 Identities=47% Similarity=0.781 Sum_probs=458.0
Q ss_pred CcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHH
Q 010494 25 SVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLV 104 (509)
Q Consensus 25 ~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll 104 (509)
...+.|++.+.|| +++|..|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|+
T Consensus 8 ~~~~~~~~~~~~~--~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll 85 (555)
T PTZ00114 8 SRYRFKGKEIRFG--DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLI 85 (555)
T ss_pred hHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHH
Confidence 3567778889999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCC
Q 010494 105 RQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGN 183 (509)
Q Consensus 105 ~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~ 183 (509)
+++|++||+++||||||+|+||++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++
T Consensus 86 ~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~ 165 (555)
T PTZ00114 86 RQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANG 165 (555)
T ss_pred HHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999866 899999999999
Q ss_pred chhhhhHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHH
Q 010494 184 DYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMF 263 (509)
Q Consensus 184 ~~~l~~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~ 263 (509)
++.|++++++|+.+++++|.|.+++|++++|++++++|++|+++|.+|||.+++++|+.+++||+|+++|++|++++++.
T Consensus 166 ~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~ 245 (555)
T PTZ00114 166 DVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSIL 245 (555)
T ss_pred hHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecc-cCccccCCC
Q 010494 264 KILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDE-MGLTLDKAG 342 (509)
Q Consensus 264 ~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~-~~~~~~~~~ 342 (509)
++++++.+.|+||||++++|+++++++|..|+++|.++|+|||+|+||++++++|+|||++|||+++++. .+..+++++
T Consensus 246 ~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~ 325 (555)
T PTZ00114 246 PILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFD 325 (555)
T ss_pred HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 666778899
Q ss_pred ccccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHH
Q 010494 343 KEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQ 422 (509)
Q Consensus 343 ~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~ 422 (509)
+++||+|++|+++++++++++++++++.|++|+..++++++...++|++++|++|+++|+++++||+|||+|+.+++|++
T Consensus 326 ~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~ 405 (555)
T PTZ00114 326 PSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKK 405 (555)
T ss_pred HHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCccccCchhHHHHHHHHHhHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 010494 423 LRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKE--LLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQV 500 (509)
Q Consensus 423 ~~~~dAl~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~--~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l 500 (509)
|+++||++++++++++|||||||++|+++|..|++++. ..++++| +|+++|++||+.||++||+|||+|+.+++++|
T Consensus 406 r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l 484 (555)
T PTZ00114 406 DRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQR-TGVKIVRNALRLPTKQIAENAGVEGAVVVEKI 484 (555)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999998875 4556666 59999999999999999999999999999999
Q ss_pred hcc
Q 010494 501 SAH 503 (509)
Q Consensus 501 ~~~ 503 (509)
++.
T Consensus 485 ~~~ 487 (555)
T PTZ00114 485 LEK 487 (555)
T ss_pred Hhc
Confidence 873
|
|
| >PRK12850 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-100 Score=828.01 Aligned_cols=471 Identities=46% Similarity=0.792 Sum_probs=452.7
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|+|.|| ++||+.|+.|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~ 79 (544)
T PRK12850 2 AAKEIRFS--TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVAS 79 (544)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHh
Confidence 57899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++++++. +|.++|++|+++++.|+
T Consensus 80 ~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (544)
T PRK12850 80 KTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIG 159 (544)
T ss_pred hhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
+++++|+..++++|.|.++.+....+++++++|++|+++|.+|||.++.++++.+++||+|+++|+++++.+++.+++++
T Consensus 160 ~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~ 239 (544)
T PRK12850 160 EMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA 239 (544)
T ss_pred HHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHH
Confidence 99999999999888887766655556669999999999999999999888899999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++++++|+.|+++|.++++|||+|+||++++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 319 (544)
T PRK12850 240 VVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR 319 (544)
T ss_pred HHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.+++.+++|++|+||+++++++.|+++++++++++.++|++++|+||++||+++++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (544)
T PRK12850 320 AKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDA 399 (544)
T ss_pred CcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
++++++++++|||||||++|++++..|+++ +..++.+| +++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 400 l~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~ 473 (544)
T PRK12850 400 LHATRAAVEEGIVPGGGVALLRARSALRGL-KGANADET-AGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP 473 (544)
T ss_pred HHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Confidence 999999999999999999999999999988 55666666 599999999999999999999999999999998754
|
|
| >TIGR02348 GroEL chaperonin GroL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-100 Score=825.09 Aligned_cols=468 Identities=49% Similarity=0.810 Sum_probs=452.8
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhh
Q 010494 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (509)
Q Consensus 32 k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~ 111 (509)
|++.|| +++|+.|++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|++++|++|
T Consensus 2 ~~~~~~--~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 79 (524)
T TIGR02348 2 KQIKFD--EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKT 79 (524)
T ss_pred cccccc--HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHcc
Confidence 689999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhhhH
Q 010494 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKM 190 (509)
Q Consensus 112 d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~~l 190 (509)
|+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. ++.++|++|+++++.++++
T Consensus 80 d~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 159 (524)
T TIGR02348 80 NDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSL 159 (524)
T ss_pred CceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred HHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHH
Q 010494 191 ISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270 (509)
Q Consensus 191 i~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~ 270 (509)
+++|+..++++|.|.++.|+..+|.+++++|++|+++|.+|+|.++++++++.++||+|+++|++|++++++.++++++.
T Consensus 160 v~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~ 239 (524)
T TIGR02348 160 IAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVA 239 (524)
T ss_pred HHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHH
Confidence 99999999998888888888886766999999999999999999988899999999999999999999999999999999
Q ss_pred hcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcce
Q 010494 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAI 350 (509)
Q Consensus 271 ~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~ 350 (509)
+.|+||||++++|+++++++|+.|+++|+++|+|||+|+|++.++++|+|||++|||++++++.+++++++++++||+|+
T Consensus 240 ~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 319 (524)
T TIGR02348 240 QSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAK 319 (524)
T ss_pred HhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHH
Q 010494 351 KVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALN 430 (509)
Q Consensus 351 ~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~ 430 (509)
.+++.+++|++++++++++.++.|++.++++++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||+|
T Consensus 320 ~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~ 399 (524)
T TIGR02348 320 KVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALN 399 (524)
T ss_pred EEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 431 ATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 431 a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++|+++++|||||||++|+++|.+|++ ....++.+| +++++|++||+.||++||+|||+|+.+++++|++.
T Consensus 400 ~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~ 470 (524)
T TIGR02348 400 ATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEA-IGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES 470 (524)
T ss_pred HHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 999999999999999999999999998 556667666 59999999999999999999999999999999875
|
This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118. |
| >cd03344 GroEL GroEL_like type I chaperonin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-100 Score=822.85 Aligned_cols=470 Identities=51% Similarity=0.824 Sum_probs=454.9
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhh
Q 010494 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (509)
Q Consensus 32 k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~ 111 (509)
|+|.|| +++|+.|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||++++||+|++++|++|
T Consensus 1 ~~~~~g--~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~q 78 (520)
T cd03344 1 KDIKFG--EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 78 (520)
T ss_pred Ccccch--HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhh
Confidence 468899 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhhhH
Q 010494 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKM 190 (509)
Q Consensus 112 d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~~l 190 (509)
|+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++++.++++
T Consensus 79 d~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~l 158 (520)
T cd03344 79 NDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGEL 158 (520)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred HHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHH
Q 010494 191 ISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270 (509)
Q Consensus 191 i~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~ 270 (509)
+++|+..++++|.|.+++|++++|++++++|++|+++|.+|+|.+++++|+++++||+|+++|+++++++++.++++++.
T Consensus 159 v~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~ 238 (520)
T cd03344 159 IAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238 (520)
T ss_pred HHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999988888889999999966999999999999999999998889999999999999999999999999999999
Q ss_pred hcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcce
Q 010494 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAI 350 (509)
Q Consensus 271 ~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~ 350 (509)
+.|+||||++++|+++++++|..|+++|.++|+|||+|++|++++++|+|||.+|||++++++++++++++++++||+|+
T Consensus 239 ~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~ 318 (520)
T cd03344 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAK 318 (520)
T ss_pred hhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHH
Q 010494 351 KVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALN 430 (509)
Q Consensus 351 ~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~ 430 (509)
.+++++++|+++++|+++++++.|++.++++++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||++
T Consensus 319 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~ 398 (520)
T cd03344 319 KVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALN 398 (520)
T ss_pred EEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccC
Q 010494 431 ATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKC 505 (509)
Q Consensus 431 a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~~ 505 (509)
++++++++|+|||||++|++++.+|++++. .++++| +++++|++||+.||++||+|||+|+.+++++|++.+.
T Consensus 399 ~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~ 471 (520)
T cd03344 399 ATRAAVEEGIVPGGGVALLRASPALDKLKA-LNGDEK-LGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD 471 (520)
T ss_pred HHHHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999887 767777 5999999999999999999999999999999987654
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. |
| >PRK12851 groEL chaperonin GroEL; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-99 Score=820.98 Aligned_cols=471 Identities=46% Similarity=0.797 Sum_probs=450.8
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|++.|| +++++.|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++++||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~ 79 (541)
T PRK12851 2 AAKEVKFH--VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVAS 79 (541)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 57899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++. ++.++|++|+++++.|+
T Consensus 80 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~ 159 (541)
T PRK12851 80 KTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIG 159 (541)
T ss_pred hhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 79999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
+++++|+..++++|.|.++.+....+++++++|++|+++|.+|||.++.++|+++++||+|+++|+++++.+++.+++++
T Consensus 160 ~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~ 239 (541)
T PRK12851 160 RLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA 239 (541)
T ss_pred HHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHH
Confidence 99999999999888777655444344459999999999999999999988999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~ 319 (541)
T PRK12851 240 VVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR 319 (541)
T ss_pred HHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988777889999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.+++.+++|+++++|++++++..|++.++++++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DA 399 (541)
T PRK12851 320 AKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDA 399 (541)
T ss_pred ccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
++++++++++|||||||++|+++|..|++++.. ++.+| +++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 400 l~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~ 473 (541)
T PRK12851 400 LHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGDQR-TGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP 473 (541)
T ss_pred HHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Confidence 999999999999999999999999999988765 56666 699999999999999999999999999999998764
|
|
| >CHL00093 groEL chaperonin GroEL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-99 Score=817.74 Aligned_cols=470 Identities=49% Similarity=0.820 Sum_probs=450.4
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|+|.|| ++||+++++||..++++|++||||+||+|||+++.|+++|||||+||+|+|+++||++++|++|++++|.
T Consensus 1 ~~~~~~~~--~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~ 78 (529)
T CHL00093 1 MSKKILYQ--DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAAS 78 (529)
T ss_pred CCceeecC--HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHH
Confidence 56899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+|++++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++. +|.++|++|+++++.|+
T Consensus 79 ~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~ 158 (529)
T CHL00093 79 KTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVG 158 (529)
T ss_pred hcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCH-HHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNP-KDMFKILD 267 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~-~~l~~~le 267 (509)
+++++|+.+++++|.|.++.|+..++.+++++|++|+++|.+|||.+++++|+.+++||+|+++|++++.. .++.++++
T Consensus 159 ~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~ 238 (529)
T CHL00093 159 SMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILE 238 (529)
T ss_pred HHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHH
Confidence 99999999999889888777766566669999999999999999999999999999999999999999987 88999999
Q ss_pred HHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccC
Q 010494 268 SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLG 347 (509)
Q Consensus 268 ~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG 347 (509)
.+.+.+.|+||++++|+++++++|+.|+.+|+.+|+|||+|+++++++++|+|||++|||++++++.+.+++++++++||
T Consensus 239 ~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG 318 (529)
T CHL00093 239 QVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLG 318 (529)
T ss_pred HHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCC
Confidence 99999999999999999999999999998888999999999999999999999999999999999888889999999999
Q ss_pred cceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHH
Q 010494 348 TAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIED 427 (509)
Q Consensus 348 ~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~d 427 (509)
+|+.+++.++++++++ .++++.+..|+..++++++.+.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++|
T Consensus 319 ~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~D 397 (529)
T CHL00093 319 QARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLED 397 (529)
T ss_pred cceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHH
Confidence 9999999999999998 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCccccCchhHHHHHHHHHhHhc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 428 ALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKE-LLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 428 Al~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~-~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|++++|+++++|+|||||++|+++|..|++++. ..++.+| +++++|++||+.||++||+|||+|+.+++++|++.
T Consensus 398 Al~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~-~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~ 473 (529)
T CHL00093 398 AINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDEL-IGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ 473 (529)
T ss_pred HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc
Confidence 999999999999999999999999999999876 5667777 58999999999999999999999999999999875
|
|
| >PRK14104 chaperonin GroEL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-99 Score=817.48 Aligned_cols=472 Identities=45% Similarity=0.783 Sum_probs=452.5
Q ss_pred chhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHh
Q 010494 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR 110 (509)
Q Consensus 31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~ 110 (509)
+|++.|| +++|+.|++|+..++++|++||||+||+|||+++.|+++|||||+||+|+|++++|+|++||+|++++|++
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~ 80 (546)
T PRK14104 3 AKEVKFG--VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (546)
T ss_pred cceecch--HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHh
Confidence 4789999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhhh
Q 010494 111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGK 189 (509)
Q Consensus 111 ~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~~ 189 (509)
||+++||||||+|+||++||+++.+++++|+||+.|++||++|.+.++++|+++++|+++. ++.++|++|+++++.+++
T Consensus 81 qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~ 160 (546)
T PRK14104 81 SADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGK 160 (546)
T ss_pred hcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999866 799999999999999999
Q ss_pred HHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHH
Q 010494 190 MISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSA 269 (509)
Q Consensus 190 li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i 269 (509)
++++|+.+++++|.|.++.++++++++++++|++|+++|.||||.++++.++.++++|+|+++|.++++++++.++++.+
T Consensus 161 lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i 240 (546)
T PRK14104 161 FLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAV 240 (546)
T ss_pred HHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHH
Confidence 99999999999999998888888666699999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcc
Q 010494 270 VKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTA 349 (509)
Q Consensus 270 ~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~ 349 (509)
.+.|+||||++++|+++|+++|..|++++.++|+|||+|+||+.++++|+|||++|||++++++.+..++++++++||+|
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a 320 (546)
T PRK14104 241 VQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRA 320 (546)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCce
Confidence 99999999999999999999999999999899999999999999999999999999999999888888999999999999
Q ss_pred eEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHH
Q 010494 350 IKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDAL 429 (509)
Q Consensus 350 ~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl 429 (509)
+++++++++|++++||++++.+.+|+++|+.+++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||+
T Consensus 321 ~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal 400 (546)
T PRK14104 321 KKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAM 400 (546)
T ss_pred eEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccCC
Q 010494 430 NATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCI 506 (509)
Q Consensus 430 ~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~~~ 506 (509)
|++++++++|||||||++|++++..|+++.. ..+.+| +++++|++||+.||++||+|||+|+.+++.+|++.+++
T Consensus 401 ~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~ 475 (546)
T PRK14104 401 HATRAAVEEGIVPGGGVALLRASEQLKGIKT-KNDDQK-TGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQY 475 (546)
T ss_pred HHHHHHHHcCcCcCchHHHHHHHHHHHHhhc-CChHHH-HHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999999999999998743 445455 69999999999999999999999999999999875443
|
|
| >KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-92 Score=725.47 Aligned_cols=479 Identities=47% Similarity=0.768 Sum_probs=465.6
Q ss_pred CCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccch
Q 010494 20 KRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENI 99 (509)
Q Consensus 20 ~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ 99 (509)
++.++-.+| ++|+|.|| .++|+.+++|++.|+++|.+||||+|||++|.+.+|+|+|||||+|+++++.++++.+|+
T Consensus 6 ~~~~~~~~r-~ak~i~fg--~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~ 82 (550)
T KOG0356|consen 6 GRSQTKCVR-YAKDIKFG--KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENI 82 (550)
T ss_pred cCCcccccc-cccccccC--HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhh
Confidence 445555666 89999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhh
Q 010494 100 GVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAA 178 (509)
Q Consensus 100 ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ 178 (509)
||+|+++++.++++..||||||+++|++++.+++.+-+.+|.+|..|.+|+..+.+.+.+.|++++++++.. ++.+||+
T Consensus 83 gaklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAt 162 (550)
T KOG0356|consen 83 GAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVAT 162 (550)
T ss_pred ccHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 9999999
Q ss_pred hhcCCchhhhhHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCC
Q 010494 179 VSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN 258 (509)
Q Consensus 179 ts~~~~~~l~~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~ 258 (509)
+|+|+|..+++++.+|+.++|++|+|.++.|.++.|++++++||.|++||+||||+++++.+.++|++|++++.+.+|++
T Consensus 163 iSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~ 242 (550)
T KOG0356|consen 163 ISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISS 242 (550)
T ss_pred hhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccC-cc
Q 010494 259 PKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMG-LT 337 (509)
Q Consensus 259 ~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~-~~ 337 (509)
++++.|.++...+...||||+++||+.++|.+|+.|++++.++|+|||+|+||+.+++.+.|++.+||+.++.++++ ++
T Consensus 243 v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~ 322 (550)
T KOG0356|consen 243 VQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLN 322 (550)
T ss_pred HHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 88
Q ss_pred ccCCCccccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhh
Q 010494 338 LDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVE 417 (509)
Q Consensus 338 ~~~~~~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~ 417 (509)
+++.++++||.|+++.+++++++++.+.++++++++||++++..++.+.++|+++++++|+++|++++++|.|||.|+.|
T Consensus 323 le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~E 402 (550)
T KOG0356|consen 323 LEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVE 402 (550)
T ss_pred cccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Q 010494 418 LKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVV 497 (509)
Q Consensus 418 l~E~~~~~~dAl~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii 497 (509)
++|++++++||||++++|+++|+|||||+++++|+..|.++.. .++.+|+.|++++.+||..|.++|++|||.|+..++
T Consensus 403 v~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv 481 (550)
T KOG0356|consen 403 VNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVV 481 (550)
T ss_pred hhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHH
Confidence 9999999999999999999999999999999999999998876 556777789999999999999999999999999999
Q ss_pred HHHhc
Q 010494 498 DQVSA 502 (509)
Q Consensus 498 ~~l~~ 502 (509)
.|++.
T Consensus 482 ~Kv~~ 486 (550)
T KOG0356|consen 482 EKVLN 486 (550)
T ss_pred HHHHh
Confidence 99984
|
|
| >TIGR02339 thermosome_arch thermosome, various subunits, archaeal | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-81 Score=680.11 Aligned_cols=400 Identities=25% Similarity=0.409 Sum_probs=368.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+++++.|+.||..++++++|||||+||+|||+++.|+++|||||+||+|+|+++||. |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd~~~GDGT 90 (519)
T TIGR02339 15 RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDAEVGDGT 90 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc--H-HHHHHhhhhcCCc-------hhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED--H-ELADVAAVSAGND-------YTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~--~-~l~~va~ts~~~~-------~~l~~ 189 (509)
||+++|+++|++++.+++++|+||+.|++||+.|.+.++++|++++++++. . .|.++|+|+++++ +.|++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~ 170 (519)
T TIGR02339 91 TTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLAN 170 (519)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999864 3 7999999999875 78999
Q ss_pred HHHHHHHhhcc---CCc---------EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc--
Q 010494 190 MISDALQQVGR---NGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-- 255 (509)
Q Consensus 190 li~~Ai~~v~~---~g~---------I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-- 255 (509)
++++|+.++++ +|. |...+|++++|+ ++++|++|+++|.+| +|+++++||+|++++++
T Consensus 171 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~-------~m~~~i~n~kIlll~~~Le 242 (519)
T TIGR02339 171 LVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHP-------GMPKRVKNAKIALLDAPLE 242 (519)
T ss_pred HHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCC-------CCccccCCCcEEEEecccc
Confidence 99999999985 453 334799999998 999999999999987 47788999999999997
Q ss_pred -----------CCCHHHHHHHHH-----------HHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 256 -----------IKNPKDMFKILD-----------SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 256 -----------i~~~~~l~~~le-----------~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
+++++++.++++ ++.+.|+|||+++++|++.++++|..+ ++++|+ ++
T Consensus 243 ~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~-----~v 311 (519)
T TIGR02339 243 VEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVR-----RV 311 (519)
T ss_pred ccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEe-----cC
Confidence 678888877665 889999999999999999999999755 456665 67
Q ss_pred ccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEec---CeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHH
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITK---DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~~---~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 390 (509)
++++|+|||++|||++++ ++++++++.||+|+.|++.+ ++|++|++|+++
T Consensus 312 ~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~---------------------- 364 (519)
T TIGR02339 312 KKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP---------------------- 364 (519)
T ss_pred CHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC----------------------
Confidence 789999999999999999 58888889999999999754 899999998654
Q ss_pred HHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHH
Q 010494 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKI 469 (509)
Q Consensus 391 ~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~ 469 (509)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|+++++..++.+| +
T Consensus 365 -------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~ 430 (519)
T TIGR02339 365 -------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQ-L 430 (519)
T ss_pred -------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHH-H
Confidence 367999999999999999999999999999999999 9999999999999999998877778777 5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 470 GAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 470 ~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 431 ~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~ 464 (519)
T TIGR02339 431 AIEAFADALEEIPRILAENAGLDPIDALVELRAK 464 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999753
|
Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs. |
| >cd03343 cpn60 cpn60 chaperonin family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-81 Score=674.55 Aligned_cols=403 Identities=25% Similarity=0.394 Sum_probs=370.6
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhh
Q 010494 35 YFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL 114 (509)
Q Consensus 35 ~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~ 114 (509)
.+| +++++.|+.||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||++
T Consensus 11 ~~~--~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~ 84 (517)
T cd03343 11 TSG--RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDEE 84 (517)
T ss_pred ccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHHHH
Confidence 446 789999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCCc------h
Q 010494 115 AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGND------Y 185 (509)
Q Consensus 115 ~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~~------~ 185 (509)
+||||||+++|+++|++++.+++++|+||..|++||++|.+.++++|++++++++ +. .|.++|++|++++ +
T Consensus 85 ~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~ 164 (517)
T cd03343 85 VGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKD 164 (517)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999986 44 8999999999876 8
Q ss_pred hhhhHHHHHHHhhccCCc---------EEE--ecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecc
Q 010494 186 TVGKMISDALQQVGRNGV---------VTI--EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDK 254 (509)
Q Consensus 186 ~l~~li~~Ai~~v~~~g~---------I~v--~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~ 254 (509)
.|++++++|+.++++++. |++ .+|++++|+ ++++|++|+++|.+|+| ++.++||+|+++++
T Consensus 165 ~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~m-------~~~~~n~~Illl~~ 236 (517)
T cd03343 165 KLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPGM-------PKRVENAKIALLDA 236 (517)
T ss_pred HHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCCC-------ccccCCCcEEEEec
Confidence 999999999999987532 554 799999998 99999999999999874 56789999999999
Q ss_pred c-------------CCCHHHHHHH-----------HHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCccc
Q 010494 255 K-------------IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAF 310 (509)
Q Consensus 255 ~-------------i~~~~~l~~~-----------le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~ 310 (509)
+ +++++++.++ ++++.+.|+||||++++|++.++++|..+ ++++|+
T Consensus 237 ~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~---- 306 (517)
T cd03343 237 PLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------GILAVR---- 306 (517)
T ss_pred cccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEE----
Confidence 8 5777777665 44889999999999999999999999765 467776
Q ss_pred ccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhH
Q 010494 311 GERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEE 387 (509)
Q Consensus 311 ~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~ 387 (509)
++++++|+|||++|||++++ +++++++++||+|+.|++. +++|++|++|+++
T Consensus 307 -~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~------------------- 361 (517)
T cd03343 307 -RVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP------------------- 361 (517)
T ss_pred -eCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-------------------
Confidence 67789999999999999999 6889999999999999975 7899999998765
Q ss_pred HHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHH
Q 010494 388 RFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEE 466 (509)
Q Consensus 388 ~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~ 466 (509)
..+||+|||+|+.+++|++|+++||++++|+++++| +|||||++|++++..|++++...++.+
T Consensus 362 ----------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~ 425 (517)
T cd03343 362 ----------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGRE 425 (517)
T ss_pred ----------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHH
Confidence 367999999999999999999999999999999999 999999999999999999877777877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 467 QKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 467 q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
| +++++|++||+.||++|++|||+|+.+++.+|++.
T Consensus 426 ~-~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 461 (517)
T cd03343 426 Q-LAVEAFADALEEIPRTLAENAGLDPIDTLVELRAA 461 (517)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7 58999999999999999999999999999999854
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-80 Score=671.56 Aligned_cols=400 Identities=21% Similarity=0.338 Sum_probs=361.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
++++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd~~~GDGT 90 (531)
T TIGR02347 15 DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQDDITGDGT 90 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCcH
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCccc---CcH-HHHHHhhhhcCC------chhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREV---EDH-ELADVAAVSAGN------DYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v---~~~-~l~~va~ts~~~------~~~l~~ 189 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++ .+. .|.++|+|++++ ++.|++
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 170 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTE 170 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999764 344 899999999876 689999
Q ss_pred HHHHHHHhhccCCc------EE--EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCC---
Q 010494 190 MISDALQQVGRNGV------VT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN--- 258 (509)
Q Consensus 190 li~~Ai~~v~~~g~------I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~--- 258 (509)
++++|+..+++++. |. ..+|++..|+ ++++|++|+++|.+|+ |+++++||+|+++|++++.
T Consensus 171 iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~~~~~n~~Ill~~~~le~~~~ 242 (531)
T TIGR02347 171 IVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD-------MPRRVKNAYILTCNVSLEYEKT 242 (531)
T ss_pred HHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-------CceeccCceEEEEeCCCCCCcc
Confidence 99999999987653 33 3578899998 9999999999999987 4678999999999997642
Q ss_pred ----------HHHH-----------HHHHHHHHhcCC-------C---eEEEeccchHHHHHHHHHhcccccceeeeecC
Q 010494 259 ----------PKDM-----------FKILDSAVKEKY-------P---IVIVAEDIEQQALALLIRNKLRGVLKAAAIKA 307 (509)
Q Consensus 259 ----------~~~l-----------~~~le~i~~~~~-------~---lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~ 307 (509)
++++ ...++++.+.+. + +|+++++|++.++++|..+ +|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~- 315 (531)
T TIGR02347 243 EVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GIMALR- 315 (531)
T ss_pred ccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------CceEEc-
Confidence 3333 334566766551 4 8999999999999999876 478876
Q ss_pred cccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEE---EEecCeEEEEecCCChhHHHHHHHHHHHHHhh
Q 010494 308 PAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKV---VITKDSTLIVTDGSTRAAVEKRISEIRSLAEI 384 (509)
Q Consensus 308 ~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i---~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~ 384 (509)
++++++|+|||++|||++++ +++++++++||+|+.| ++++++|++|++|+++
T Consensus 316 ----rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------------- 370 (531)
T TIGR02347 316 ----RAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP---------------- 370 (531)
T ss_pred ----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEEEEEcCCCC----------------
Confidence 56688999999999999998 6899999999999999 5678899999998765
Q ss_pred hhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCC
Q 010494 385 TEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLD 463 (509)
Q Consensus 385 ~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~ 463 (509)
+++||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|+++++..+
T Consensus 371 -------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~ 431 (531)
T TIGR02347 371 -------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVK 431 (531)
T ss_pred -------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCC
Confidence 478999999999999999999999999999999999 999999999999999999987777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 464 NEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 464 ~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+.+|. ++++|++||++||++||+|||+|+.+++.+|++.
T Consensus 432 ~~~~~-~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~ 470 (531)
T TIGR02347 432 GKAKL-GVEAFANALLVIPKTLAENSGLDAQDTLVKLEDE 470 (531)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 87874 8999999999999999999999999999999764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-81 Score=669.94 Aligned_cols=395 Identities=22% Similarity=0.353 Sum_probs=361.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.+++..|+.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 11 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~~~GDGT 86 (484)
T cd03342 11 GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDDITGDGT 86 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhhHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC---cH-HHHHHhhhhcCCc------hhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE---DH-ELADVAAVSAGND------YTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~---~~-~l~~va~ts~~~~------~~l~~ 189 (509)
||+++|+++|++++.++++.|+||..|++||++|.+.++++|++++++++ +. .+.++|++|++++ +.|++
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~ 166 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTE 166 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 55 8999999999875 89999
Q ss_pred HHHHHHHhhccCC-c-------EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHH
Q 010494 190 MISDALQQVGRNG-V-------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKD 261 (509)
Q Consensus 190 li~~Ai~~v~~~g-~-------I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~ 261 (509)
++++|+..+++++ . |...+|+++.|+ ++++|++|+++|.+|+ |+++++||+|+++|++++..++
T Consensus 167 l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~-------m~~~~~n~~Ill~~~~le~~~~ 238 (484)
T cd03342 167 IVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPD-------MPKRVENAYILTCNVSLEYEKT 238 (484)
T ss_pred HHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCC-------CCccccCceEEEEeCCCCCCcc
Confidence 9999999998865 2 334589999998 9999999999999987 4678999999999999987644
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCC
Q 010494 262 MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKA 341 (509)
Q Consensus 262 l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~ 341 (509)
-.+ ...-.+|||++++|++.++++|..| +|+||+ ++++++|+|||++|||++++ +++++
T Consensus 239 ~~~-----~~~~~~lvi~~~~I~~~al~~l~~~------~I~av~-----~~~~~~l~~ia~~tGa~ii~-----~l~~~ 297 (484)
T cd03342 239 EVN-----SGFFYSVVINQKGIDPPSLDMLAKE------GILALR-----RAKRRNMERLTLACGGVAMN-----SVDDL 297 (484)
T ss_pred ccC-----cEEEEEEEEeCCCccHHHHHHHHHC------CCeEEE-----eCCHHHHHHHHHHhCCEEec-----ccccC
Confidence 111 1112469999999999999999888 378887 56788999999999999999 68999
Q ss_pred CccccCcceEE---EEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhH
Q 010494 342 GKEVLGTAIKV---VITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVEL 418 (509)
Q Consensus 342 ~~~~lG~~~~i---~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l 418 (509)
++++||+|+.+ ++++++|++|++|+++ +++||+|||+|+.++
T Consensus 298 ~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~tI~lrg~t~~~l 342 (484)
T cd03342 298 SPECLGYAGLVYERTLGEEKYTFIEGVKNP-----------------------------------KSCTILIKGPNDHTI 342 (484)
T ss_pred ChhhCcccceEEEEEECCeEEEEEECCCCC-----------------------------------cEEEEEEeCCCHHHH
Confidence 99999999999 4678899999998765 588999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Q 010494 419 KDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVV 497 (509)
Q Consensus 419 ~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii 497 (509)
+|.+|+++||++++++++++| +||||||+|++++.+|+++++..++++| +++++|++||+.||++||+|||+|+.+++
T Consensus 343 ~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~~~~l 421 (484)
T cd03342 343 TQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK-LGVQAFADALLVIPKTLAENSGLDVQETL 421 (484)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999 9999999999999999999877778777 58999999999999999999999999999
Q ss_pred HHHhcc
Q 010494 498 DQVSAH 503 (509)
Q Consensus 498 ~~l~~~ 503 (509)
.+|++.
T Consensus 422 ~~l~~~ 427 (484)
T cd03342 422 VKLQDE 427 (484)
T ss_pred HHHHHH
Confidence 999754
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-80 Score=670.33 Aligned_cols=404 Identities=25% Similarity=0.372 Sum_probs=365.3
Q ss_pred hccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhh
Q 010494 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTND 113 (509)
Q Consensus 34 i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~ 113 (509)
..|| +++++.|+.||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+
T Consensus 18 ~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~ 91 (526)
T cd03339 18 RLKG--LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQDD 91 (526)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH----HHHHHHHHHhhhh
Confidence 4557 899999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC----cH-HHHHHhhhhcCCc----
Q 010494 114 LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE----DH-ELADVAAVSAGND---- 184 (509)
Q Consensus 114 ~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~----~~-~l~~va~ts~~~~---- 184 (509)
++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +. .|.++|+|+++++
T Consensus 92 ~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~ 171 (526)
T cd03339 92 EIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSR 171 (526)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999886 23 7999999998853
Q ss_pred --hhhhhHHHHHHHhhccC-------Cc--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeec
Q 010494 185 --YTVGKMISDALQQVGRN-------GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD 253 (509)
Q Consensus 185 --~~l~~li~~Ai~~v~~~-------g~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d 253 (509)
+.|++++++|+..+... .. |...+|++++|| ++++|++|+++|.+|+| ++.++||||++++
T Consensus 172 ~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m-------~~~~~n~kI~ll~ 243 (526)
T cd03339 172 CHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQM-------PKEVKDAKIAILT 243 (526)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCCC-------CceecCCCEEEEE
Confidence 78999999999988531 12 344699999999 99999999999999874 5677899999988
Q ss_pred cc-------------CCCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcc
Q 010494 254 KK-------------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA 309 (509)
Q Consensus 254 ~~-------------i~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~ 309 (509)
++ ++++++ +.++++++.+.|+||||++++|++.++++|..|+ +.||++
T Consensus 244 ~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~-- 315 (526)
T cd03339 244 CPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRW-- 315 (526)
T ss_pred ecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEe--
Confidence 64 456666 5667889999999999999999999999998885 568874
Q ss_pred cccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---e--cCeEEEEecCCChhHHHHHHHHHHHHHhh
Q 010494 310 FGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---T--KDSTLIVTDGSTRAAVEKRISEIRSLAEI 384 (509)
Q Consensus 310 ~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~--~~~~~~~~g~~~~~~i~~ri~~l~~~~~~ 384 (509)
+++++|+|||++|||++++ ++++++++.+|+|+.|++ + +++++||+||+++
T Consensus 316 ---v~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~---------------- 371 (526)
T cd03339 316 ---VGGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS---------------- 371 (526)
T ss_pred ---CCHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC----------------
Confidence 4567899999999999999 689999999999999984 2 4688999998754
Q ss_pred hhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCC
Q 010494 385 TEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLD 463 (509)
Q Consensus 385 ~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~ 463 (509)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|..|++++...+
T Consensus 372 -------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~ 432 (526)
T cd03339 372 -------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCS 432 (526)
T ss_pred -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCC
Confidence 578999999999999999999999999999999998 999999999999999999887777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 464 NEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 464 ~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+.+| +++++|++||+.||++||+|||+|+.+++++|++.
T Consensus 433 ~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~ 471 (526)
T cd03339 433 GIEQ-YAMRAFADALESIPLALAENSGLNPIETLSEVKAR 471 (526)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 8777 58999999999999999999999999999999743
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-80 Score=671.38 Aligned_cols=405 Identities=24% Similarity=0.342 Sum_probs=364.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+++|+.|++||..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 7 QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEVGDGT 82 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-cCcccC--cH-HHHHHhhhhcCC------chhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL-TSREVE--DH-ELADVAAVSAGN------DYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~-~s~~v~--~~-~l~~va~ts~~~------~~~l~~ 189 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++ ++++++ +. .|.++|+|++++ .+.|++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999996 899986 44 799999999873 389999
Q ss_pred HHHHHHHhhcc---CCc---------EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC
Q 010494 190 MISDALQQVGR---NGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (509)
Q Consensus 190 li~~Ai~~v~~---~g~---------I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 257 (509)
++++|+..++. +|. |...+|++++|+ ++++|++|+++|.+| +|++.++||+|++++++++
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~~Le 234 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-------GMPTRVKNAKIACLDFNLQ 234 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------CCcccccCCcEEEEeccCC
Confidence 99999999952 232 235689999998 999999999999987 4788999999999999764
Q ss_pred C-------------HHHH-----------HHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 258 N-------------PKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 258 ~-------------~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
. ++++ .++++++.+.|+||||++++|++.++++|..+ +|++++ ++
T Consensus 235 ~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~-----~v 303 (527)
T cd03335 235 KTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RV 303 (527)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eC
Confidence 3 2332 34577888999999999999999999999887 467776 67
Q ss_pred ccchHHHHHHHhCCeeeecccCc-cccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHH
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGL-TLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~-~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~ 389 (509)
++++|+|||++|||+++++..++ ..+++++++||+|+.++ +++++|++|+||+++
T Consensus 304 ~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~--------------------- 362 (527)
T cd03335 304 KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKR--------------------- 362 (527)
T ss_pred CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCC---------------------
Confidence 78999999999999999964333 12345667899999999 678899999998653
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHH
Q 010494 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (509)
Q Consensus 390 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~ 468 (509)
+++||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|+++++..++.+|
T Consensus 363 --------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~- 427 (527)
T cd03335 363 --------------SSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 427 (527)
T ss_pred --------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHH-
Confidence 589999999999999999999999999999999999 9999999999999999999877778787
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 469 IGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 469 ~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 428 ~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~ 462 (527)
T cd03335 428 LAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAY 462 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-80 Score=668.31 Aligned_cols=399 Identities=26% Similarity=0.394 Sum_probs=362.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+++++.|++||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 26 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GDGT 101 (532)
T TIGR02343 26 LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQDDEIGDGT 101 (532)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH----HHHHHHHHHHHHHHhcCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc----H-HHHHHhhhhcCC------chhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED----H-ELADVAAVSAGN------DYTVG 188 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~----~-~l~~va~ts~~~------~~~l~ 188 (509)
||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++ . .|.++|+|++++ .+.|+
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 181 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFA 181 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998753 3 799999999875 36799
Q ss_pred hHHHHHHHhhccC--C-----c--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc----
Q 010494 189 KMISDALQQVGRN--G-----V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK---- 255 (509)
Q Consensus 189 ~li~~Ai~~v~~~--g-----~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~---- 255 (509)
+++++|+..+... + . |...+|++++|+ ++++|++|+++|.+|+ |++.++||||++++++
T Consensus 182 ~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~-------m~~~~~n~kI~l~~~~le~~ 253 (532)
T TIGR02343 182 EIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQ-------MPKEVKDAKIAILTCPFEPP 253 (532)
T ss_pred HHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCC-------CCeeecCCcEEEEEeecccc
Confidence 9999999988531 1 2 344699999999 9999999999999986 4667889999998864
Q ss_pred ---------CCCHHHH-----------HHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCcc
Q 010494 256 ---------IKNPKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (509)
Q Consensus 256 ---------i~~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~ 315 (509)
+++++++ .++++++.+.|+||||++++|++.++++|..|+ +.+|+ ++++
T Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~-----~~~~ 322 (532)
T TIGR02343 254 KPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVR-----WVGG 322 (532)
T ss_pred ccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEE-----cCCH
Confidence 4666666 667899999999999999999999999998885 56777 4456
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe-----cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHH
Q 010494 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT-----KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390 (509)
Q Consensus 316 ~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~-----~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 390 (509)
++|+|||++|||++++ +++++++++||+|+.|+.. .++++++++|+++
T Consensus 323 ~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~---------------------- 375 (532)
T TIGR02343 323 HELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS---------------------- 375 (532)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC----------------------
Confidence 7899999999999999 6899999999999999842 2578999998765
Q ss_pred HHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHH
Q 010494 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKI 469 (509)
Q Consensus 391 ~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~ 469 (509)
.++||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|+++|++|++++...++.+| +
T Consensus 376 -------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~ 441 (532)
T TIGR02343 376 -------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQ-Y 441 (532)
T ss_pred -------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHH-H
Confidence 378999999999999999999999999999999996 9999999999999999998877778887 5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Q 010494 470 GAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSA 502 (509)
Q Consensus 470 ~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~ 502 (509)
++++|++||+.||++||+|||+|+.+++.+|++
T Consensus 442 ~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~ 474 (532)
T TIGR02343 442 AIRAFADALEEIPMALAENSGLDPIGTLSDLKS 474 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999975
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-81 Score=613.30 Aligned_cols=420 Identities=21% Similarity=0.329 Sum_probs=385.1
Q ss_pred CCcceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccch
Q 010494 4 LSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDG 83 (509)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG 83 (509)
|..||++++|+++.+|+..| .-+|+.+|..+++.++|||||+|+||+|++..|+.+|+|||
T Consensus 2 m~~~ii~lkegtd~sqGk~Q-------------------lvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDG 62 (543)
T KOG0361|consen 2 MQPPIILLKEGTDPSQGKGQ-------------------LVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDG 62 (543)
T ss_pred CCCCEEEeecccCcccCchh-------------------hhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCc
Confidence 78999999999999997766 67899999999999999999999999999999999999999
Q ss_pred hhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Q 010494 84 ETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL 163 (509)
Q Consensus 84 ~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~ 163 (509)
+||+|.+++-||+ |+.++++|++||.++||||||||+|++++|+++..+++.|+||..|+++|++|...+++.|++
T Consensus 63 ATIlKlldivhPa----aktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~e 138 (543)
T KOG0361|consen 63 ATILKLLDIVHPA----AKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKE 138 (543)
T ss_pred HHHHHHHhhcChh----HHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCc--H-----HHHHHhhhhcCC------chhhhhHHHHHHHhhccC---Cc--EEEecCCCcccceEEeeceEEe
Q 010494 164 TSREVED--H-----ELADVAAVSAGN------DYTVGKMISDALQQVGRN---GV--VTIEKGKCTENSLEIVEGMRFD 225 (509)
Q Consensus 164 ~s~~v~~--~-----~l~~va~ts~~~------~~~l~~li~~Ai~~v~~~---g~--I~v~~g~~~~ds~~li~Gi~~~ 225 (509)
+++.++. + .|++.|.|++++ +++|+++++||+..++.+ +. |++.+||+++|| .+++|+.|+
T Consensus 139 lav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFk 217 (543)
T KOG0361|consen 139 LAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFK 217 (543)
T ss_pred heeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeee
Confidence 9998872 1 688999998865 589999999999999853 11 677899999999 799999999
Q ss_pred ccCCCCccccCcCCceeEeeceeeEeeccc-------------CCCHHHHHHH-----------HHHHHhcCCCeEEEec
Q 010494 226 RGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKDMFKI-----------LDSAVKEKYPIVIVAE 281 (509)
Q Consensus 226 ~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~l~~~-----------le~i~~~~~~lvi~~~ 281 (509)
+.|.+..|. .+|+.+.||||+++|-. +.++++++.+ |+++..+|.|+|+..-
T Consensus 218 KtFsYAGfE----qqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkL 293 (543)
T KOG0361|consen 218 KTFSYAGFE----QQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKL 293 (543)
T ss_pred ehccccchh----hCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 999998874 56779999999999853 5667776653 6788999999999999
Q ss_pred cchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCe
Q 010494 282 DIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDS 358 (509)
Q Consensus 282 ~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~ 358 (509)
.|.|.|.++|....+ . +.|++..++|.|+..+|||++.+ +..++.++.||.|..++ +++++
T Consensus 294 pIGD~ATQyFAdrdi------F-----CAGRV~~eDl~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eR 357 (543)
T KOG0361|consen 294 PIGDLATQYFADRDI------F-----CAGRVPEEDLNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGER 357 (543)
T ss_pred cchHHHHHHhhccCc------e-----ecCcCCHHHHHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchh
Confidence 999999999876643 3 45789999999999999999999 57888999999999997 57899
Q ss_pred EEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhh
Q 010494 359 TLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438 (509)
Q Consensus 359 ~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~ 438 (509)
|.+|+||+.. +.||+++||+.+..++|.+|++|||++++|.|+++
T Consensus 358 yN~Fegcp~a-----------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn 402 (543)
T KOG0361|consen 358 YNLFEGCPKA-----------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKN 402 (543)
T ss_pred hhhhcCCCcc-----------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 9999999754 48999999999999999999999999999999999
Q ss_pred C-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 439 G-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 439 g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
. ||+|||++||++|+.|++++.++.+++|. .+.+|++|||.||++||+|+|+|...++.||+..
T Consensus 403 ~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~-~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~r 467 (543)
T KOG0361|consen 403 DSVVAGGGAIEMELSKYLRDYSRTIAGKQQL-FINAYAKALEVIPRQLCDNAGFDATNILNKLRQR 467 (543)
T ss_pred CcEeeCCceeeehHHHHHHHhhcccCcHHHH-HHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHH
Confidence 7 99999999999999999999999999986 5999999999999999999999999999999865
|
|
| >TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-80 Score=667.55 Aligned_cols=400 Identities=21% Similarity=0.298 Sum_probs=364.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
++++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (525)
T TIGR02344 15 RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhhhhccCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCC------chhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~l~~l 190 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +. .|.++|+|++++ ++.|+++
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l 170 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDL 170 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 33 799999888765 5899999
Q ss_pred HHHHHHhhccCC-----------c--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC
Q 010494 191 ISDALQQVGRNG-----------V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (509)
Q Consensus 191 i~~Ai~~v~~~g-----------~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 257 (509)
+++|+..+++++ . |...+|++++|| ++++|++|++++.++ +|+.+++||+|++++++++
T Consensus 171 ~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (525)
T TIGR02344 171 ALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLE 242 (525)
T ss_pred HHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccc
Confidence 999999998653 1 334579999998 999999999997765 4788999999999999764
Q ss_pred C-------------HHHHHHHHH-----------HHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 258 N-------------PKDMFKILD-----------SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 258 ~-------------~~~l~~~le-----------~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
. ++++.++++ ++.+.|++||++++.|++.++++|..+ +|+|++ ++
T Consensus 243 ~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av~-----~v 311 (525)
T TIGR02344 243 YKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAIR-----RV 311 (525)
T ss_pred cccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEEe-----cC
Confidence 3 466666544 788899999999999999999988665 578765 78
Q ss_pred ccchHHHHHHHhCCeeeecccCccccCCCccccCc-ceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHH
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT-AIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~-~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~ 389 (509)
++++|+|||++|||++++ ++++++++++|+ |+.+++ ++++|++|+||+++
T Consensus 312 ~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 365 (525)
T TIGR02344 312 RKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP--------------------- 365 (525)
T ss_pred CHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC---------------------
Confidence 899999999999999999 688899999999 998987 56889999998765
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHH
Q 010494 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (509)
Q Consensus 390 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~ 468 (509)
.++||+|||+|+.+++|++|+++||+++++++++++ +|||||++|+++|.+|+++++..++.+|
T Consensus 366 --------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~- 430 (525)
T TIGR02344 366 --------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ- 430 (525)
T ss_pred --------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH-
Confidence 478999999999999999999999999999999996 9999999999999999998877788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 469 IGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 469 ~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 431 ~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~ 465 (525)
T TIGR02344 431 WPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAK 465 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999874
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-79 Score=664.78 Aligned_cols=403 Identities=22% Similarity=0.346 Sum_probs=367.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.+++..|+.+|..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (522)
T cd03340 15 KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDAEVGDGT 90 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHhHhCCCh
Confidence 679999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc------H-HHHHHhhhhcC------Cchh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED------H-ELADVAAVSAG------NDYT 186 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~------~-~l~~va~ts~~------~~~~ 186 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++ . .|.++|+++++ +++.
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEF 170 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHH
Confidence 999999999999999999999999999999999999999999999998864 3 69999999987 4689
Q ss_pred hhhHHHHHHHhhccCC---c--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC-----
Q 010494 187 VGKMISDALQQVGRNG---V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI----- 256 (509)
Q Consensus 187 l~~li~~Ai~~v~~~g---~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i----- 256 (509)
|++++++|+.++++++ . |...+|++++|+ ++++|++|+++|.+|+|. +|++.++||+|+++++++
T Consensus 171 l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 171 FAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE----QQPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred HHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCccccc----cCCccccCCeEEEEeCCCCCCcc
Confidence 9999999999998765 2 333589999999 899999999999999864 356779999999999873
Q ss_pred --------CCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccch
Q 010494 257 --------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (509)
Q Consensus 257 --------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~ 317 (509)
+++.+ +.+.++.+.+.|+++|+++++|++.++++|..++ |++++ ++++++
T Consensus 246 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~-----~v~~~~ 314 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAG-----RVPEED 314 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHHH
Confidence 45544 3456778889999999999999999999998774 56665 667889
Q ss_pred HHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010494 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (509)
Q Consensus 318 L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 394 (509)
|+|||++|||++++ +++++++++||+|+.++ ++++++++|.+|+.+
T Consensus 315 l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-------------------------- 363 (522)
T cd03340 315 LKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-------------------------- 363 (522)
T ss_pred HHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCC--------------------------
Confidence 99999999999999 58899999999999998 567899999998654
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHH
Q 010494 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (509)
Q Consensus 395 ~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (509)
..+||++||+|+..++|.+|+++||++++++++++| +|||||++|++++.+|+++++...+++|. ++++
T Consensus 364 ---------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~-~~~~ 433 (522)
T cd03340 364 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQL-VINA 433 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHH-HHHH
Confidence 478999999999999999999999999999999998 99999999999999999988777777774 8999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 474 FKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 474 ~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|++||+.||++|++|||+|+.+++.+|++.
T Consensus 434 fa~aL~~ip~~La~NaG~d~~~~l~~l~~~ 463 (522)
T cd03340 434 FAKALEIIPRQLCDNAGFDATDILNKLRQK 463 (522)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999874
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-79 Score=666.36 Aligned_cols=404 Identities=24% Similarity=0.341 Sum_probs=363.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+++|+.|++||..|+++|++||||+||+|||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 11 ~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 86 (536)
T TIGR02340 11 QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDREVGDGT 86 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhc-CcccC--cH-HHHHHhhhhcC------Cchhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLT-SREVE--DH-ELADVAAVSAG------NDYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~-s~~v~--~~-~l~~va~ts~~------~~~~l~~ 189 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++. ++|++ +. .|.++|+|+++ +++.|++
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~ 166 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSN 166 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999975 88887 44 89999999988 4689999
Q ss_pred HHHHHHHhhcc---CCc-------E--EEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC
Q 010494 190 MISDALQQVGR---NGV-------V--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (509)
Q Consensus 190 li~~Ai~~v~~---~g~-------I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 257 (509)
++++|+..++. +|. | ...+|+++.|+ ++++|++|+++|.+| +|+++++||+|++++++++
T Consensus 167 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 167 IVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEEEecCCC
Confidence 99999999962 332 2 33699999888 999999999999887 4788999999999999764
Q ss_pred CH-------------HH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 258 NP-------------KD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 258 ~~-------------~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
.. .+ +.+.++.+.+.|++||+++++|++.++++|..++ +++++ ++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~-----rv 307 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGVR-----RC 307 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEe-----cC
Confidence 32 22 2345677889999999999999999999998874 67776 66
Q ss_pred ccchHHHHHHHhCCeeeecccCc-cccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHH
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGL-TLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~-~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~ 389 (509)
++++|+|||++|||+++++..++ ..+++++++||+|+.|+ +++++|++|++|+++
T Consensus 308 ~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--------------------- 366 (536)
T TIGR02340 308 KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR--------------------- 366 (536)
T ss_pred CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC---------------------
Confidence 78999999999999999965433 23456677899999999 678899999988654
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHH
Q 010494 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (509)
Q Consensus 390 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~ 468 (509)
.++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++...++++|
T Consensus 367 --------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~- 431 (536)
T TIGR02340 367 --------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 431 (536)
T ss_pred --------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhH-
Confidence 489999999999999999999999999999999999 9999999999999999988777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Q 010494 469 IGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSA 502 (509)
Q Consensus 469 ~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~ 502 (509)
+++++|++||++||++||+|||+|+.+++.+|++
T Consensus 432 ~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~ 465 (536)
T TIGR02340 432 LAIAEFAEALLIIPKVLAVNAALDSTELVAKLRA 465 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999976
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-79 Score=663.99 Aligned_cols=407 Identities=21% Similarity=0.304 Sum_probs=363.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.++++.|+.+|..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~~GDGT 82 (515)
T cd03338 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIEAGDGT 82 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhHhcCCc
Confidence 678999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCC------chhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~l~~l 190 (509)
||+++|+++|++++.++++.|+||..|++||++|.+.++++|++++++++ +. .|.++|+||+++ ++.|+++
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~l 162 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPI 162 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 44 899999999984 5889999
Q ss_pred HHHHHHhhccCCc----------EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC----
Q 010494 191 ISDALQQVGRNGV----------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (509)
Q Consensus 191 i~~Ai~~v~~~g~----------I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 256 (509)
+++|+.++++++. |.+++|++++|+ ++++|++|+++|.+|++ +|+.++||+++++++++
T Consensus 163 i~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 163 AVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccc
Confidence 9999999998663 556799999999 99999999999999752 36678899999987754
Q ss_pred ---------CCH-----------HHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccc
Q 010494 257 ---------KNP-----------KDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (509)
Q Consensus 257 ---------~~~-----------~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~ 316 (509)
+++ +++.++++++.+.|+||||++++|++++++.++.|.+.+ .+|+||+ +++++
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~ 309 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----DIERE 309 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----cCCHH
Confidence 233 345567889999999999999999544444444444432 4789887 77889
Q ss_pred hHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHH
Q 010494 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNI 393 (509)
Q Consensus 317 ~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 393 (509)
+|+|||++|||++++ +++++++++||+|+.|++. +++++++.+|.+
T Consensus 310 ~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~-------------------------- 358 (515)
T cd03338 310 EIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN-------------------------- 358 (515)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCC--------------------------
Confidence 999999999999999 6888999999999999864 557889988753
Q ss_pred HHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHH
Q 010494 394 LNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAE 472 (509)
Q Consensus 394 l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~ 472 (509)
+++++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+++++..++.+| ++++
T Consensus 359 --------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~ 429 (515)
T cd03338 359 --------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQ-YCVR 429 (515)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHH-HHHH
Confidence 14689999999999999999999999999999999999 9999999999999999998877777777 5899
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 473 IFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 473 ~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+|++||+.||++|++|||+|+.+++.+|++.
T Consensus 430 ~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~ 460 (515)
T cd03338 430 AFADALEVIPYTLAENAGLNPISIVTELRNR 460 (515)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999774
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >PTZ00212 T-complex protein 1 subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-79 Score=659.50 Aligned_cols=398 Identities=21% Similarity=0.343 Sum_probs=361.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC-----CCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhh
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK-----YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL 114 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~-----~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~ 114 (509)
+++|..|+.||..++++|+|||||+||+|||+++ +|+++|||||+||+|+|+++||. |+|++++|++||++
T Consensus 21 ~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~a~~qd~~ 96 (533)
T PTZ00212 21 ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDISKTQDEE 96 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHhhhhh
Confidence 7899999999999999999999999999999998 59999999999999999999997 99999999999999
Q ss_pred cCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc-----H-HHHHHhhhhcCC-----
Q 010494 115 AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-----H-ELADVAAVSAGN----- 183 (509)
Q Consensus 115 ~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~-~l~~va~ts~~~----- 183 (509)
+||||||+|+|+++||+++.+++++|+||+.|++||++|.+.++++|+++++++++ . .|.++|+|++++
T Consensus 97 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~ 176 (533)
T PTZ00212 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTV 176 (533)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999999999999999999999999999999998864 3 789999988765
Q ss_pred -chhhhhHHHHHHHhhccC---Cc--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC-
Q 010494 184 -DYTVGKMISDALQQVGRN---GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI- 256 (509)
Q Consensus 184 -~~~l~~li~~Ai~~v~~~---g~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i- 256 (509)
.+.|++++++|+..+... .. |.+.+|++++|+ .+++|+++++++.+ .|+++++||+|+++|+++
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~--------~~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV--------GQPKRLENCKILVANTPMD 247 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------CCCccccCCcEEEEeCCCC
Confidence 378999999999988542 22 445699999999 89999999998643 357889999999999986
Q ss_pred -------------CCHHHHHH-----------HHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCccccc
Q 010494 257 -------------KNPKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGE 312 (509)
Q Consensus 257 -------------~~~~~l~~-----------~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~ 312 (509)
++++++.. .++.+.+.|+++++++++|++.++++|..+ +|+||+ +
T Consensus 248 ~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~------~I~avr-----~ 316 (533)
T PTZ00212 248 TDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA------GIMAIE-----H 316 (533)
T ss_pred CCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CCEEEe-----c
Confidence 56655432 366788999999999999999999998777 478887 4
Q ss_pred CccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHH
Q 010494 313 RKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (509)
Q Consensus 313 ~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~ 389 (509)
+++.+++|||++|||++++ +++++++++||+|+.|+ +++++|++|++|..
T Consensus 317 v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~---------------------- 369 (533)
T PTZ00212 317 ADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK---------------------- 369 (533)
T ss_pred CCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCC----------------------
Confidence 5578999999999999999 68899999999999998 67889999998753
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHH
Q 010494 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (509)
Q Consensus 390 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~ 468 (509)
+++|||+|||+|+.+++|.+|+++|||+++|+++++| +|||||++|+++|..|+++++..++.+|
T Consensus 370 -------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~- 435 (533)
T PTZ00212 370 -------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS- 435 (533)
T ss_pred -------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH-
Confidence 3689999999999999999999999999999999998 9999999999999999999877778777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Q 010494 469 IGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSA 502 (509)
Q Consensus 469 ~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~ 502 (509)
+++++|++||+.||++||+|||+|+.+++.+|++
T Consensus 436 ~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~ 469 (533)
T PTZ00212 436 LAIEAFAKALRQIPTIIADNGGYDSAELVSKLRA 469 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999985
|
|
| >TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-78 Score=657.81 Aligned_cols=402 Identities=22% Similarity=0.327 Sum_probs=363.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.+++..|+.+|..++++|++||||+||+|||+++.| ++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~~~~GDGT 91 (522)
T TIGR02345 17 KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQDSEVGDGT 91 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999 99999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC-----cH-HHHHHhhhhcC------Cchhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-----DH-ELADVAAVSAG------NDYTV 187 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~-~l~~va~ts~~------~~~~l 187 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +. .|.++|+|+++ +++.|
T Consensus 92 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l 171 (522)
T TIGR02345 92 TSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFF 171 (522)
T ss_pred hhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999987 33 79999999987 46899
Q ss_pred hhHHHHHHHhhccCC------cEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC----
Q 010494 188 GKMISDALQQVGRNG------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK---- 257 (509)
Q Consensus 188 ~~li~~Ai~~v~~~g------~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~---- 257 (509)
++++++|+.++++++ .|...+|++++|+ ++++|++|+++|.+|+|. .|++.++||+|+++|++++
T Consensus 172 ~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~----~~~~~~~n~kIll~~~~Le~~~~ 246 (522)
T TIGR02345 172 SKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFE----QQPKKFANPKILLLNVELELKAE 246 (522)
T ss_pred HHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCccccc----cCCceeccceEEEEecCcccCcc
Confidence 999999999998652 1333589999999 799999999999999874 3567899999999998753
Q ss_pred ---------CHHHH-----------HHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccch
Q 010494 258 ---------NPKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (509)
Q Consensus 258 ---------~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~ 317 (509)
+++++ .+.++.+.+.|+++|+++++|++.++++|..+ +|++++ ++.+++
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~~-----~v~~~d 315 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIFCAG-----RVSDED 315 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcEEEe-----cCCHHH
Confidence 34443 33456678889999999999999999998776 467665 667889
Q ss_pred HHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010494 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (509)
Q Consensus 318 L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 394 (509)
+++++++|||++++ +++++++++||+|+.++. .++++++|+||+++
T Consensus 316 l~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-------------------------- 364 (522)
T TIGR02345 316 LKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-------------------------- 364 (522)
T ss_pred HHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 99999999999999 688899999999999985 36789999987544
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhh-CccccCchhHHHHHHHHHhHhccCCcHHHHHHHHH
Q 010494 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE-GIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (509)
Q Consensus 395 ~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~-gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (509)
.++||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++.+|++++....+.+| +++++
T Consensus 365 ---------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~i~~ 434 (522)
T TIGR02345 365 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQ-LIIEA 434 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHH-HHHHH
Confidence 48899999999999999999999999999999998 59999999999999999998777778777 58999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 474 FKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 474 ~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|++||++||++||+|||+|+.+++.+|++.
T Consensus 435 ~a~aL~~ip~~La~NaG~d~~~vl~~l~~~ 464 (522)
T TIGR02345 435 FAKALEIIPRSLCENAGFDSIEILNKLRSR 464 (522)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999874
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=656.56 Aligned_cols=407 Identities=21% Similarity=0.312 Sum_probs=359.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.+++..|+.+|..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 678899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCCc------hhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGND------YTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~~------~~l~~l 190 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +. .|.++|+|+++++ +.|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 44 7999999998753 678999
Q ss_pred HHHHHHhhccC---Cc-----EE--EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC----
Q 010494 191 ISDALQQVGRN---GV-----VT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (509)
Q Consensus 191 i~~Ai~~v~~~---g~-----I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 256 (509)
+++|+..++++ +. |. ...|+++.|+ ++++|++|+++|.++. +||+.++||+|+++++++
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~~------~mpk~i~n~kI~ll~~~Le~~~ 236 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRSA------GGPTRIEKAKIGLIQFQISPPK 236 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEeccccccC------CCCccccCCcEEEEecCCCCCc
Confidence 99999999762 22 32 3488999999 9999999999998742 577889999999998754
Q ss_pred ---------CCH-----------HHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccc
Q 010494 257 ---------KNP-----------KDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (509)
Q Consensus 257 ---------~~~-----------~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~ 316 (509)
.++ +++.++++++.+.|+|||+|+++|++++++.++.|.+.+ .+|+||+ +++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~ 310 (517)
T TIGR02342 237 TDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK-----DIERE 310 (517)
T ss_pred ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----cCCHH
Confidence 232 234567889999999999999999544444444444433 4789987 77889
Q ss_pred hHHHHHHHhCCeeeecccCccccCCCccccCcceEEE-E--ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHH
Q 010494 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV-I--TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNI 393 (509)
Q Consensus 317 ~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~-v--~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 393 (509)
+|+|||++|||++++ ++++++++++|+|+.|+ + +++.++++.+|.+
T Consensus 311 ~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~-------------------------- 359 (517)
T TIGR02342 311 EVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQN-------------------------- 359 (517)
T ss_pred HHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEccCC--------------------------
Confidence 999999999999999 68888999999999998 3 3557778887753
Q ss_pred HHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHH
Q 010494 394 LNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAE 472 (509)
Q Consensus 394 l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~ 472 (509)
+++++||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|+++|.+|+++++..++.+| ++++
T Consensus 360 --------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i~ 430 (517)
T TIGR02342 360 --------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVES-YCVR 430 (517)
T ss_pred --------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHH-HHHH
Confidence 24689999999999999999999999999999999985 9999999999999999998877778787 5899
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 473 IFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 473 ~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+|++||++||++||+|||+|+.+++.+|++.
T Consensus 431 ~~a~al~~ip~~La~NaG~d~~~~l~~l~~~ 461 (517)
T TIGR02342 431 AFADALEVIPYTLAENAGLNPIDVVTELRNR 461 (517)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999874
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-80 Score=661.76 Aligned_cols=446 Identities=39% Similarity=0.607 Sum_probs=375.2
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
+++...|| ++||+.|+.|+..++++|++||||+||||||+++.|+|+|||||+||+|+|+++||. |+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~ 75 (524)
T COG0459 2 MGKERKFG--EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAK 75 (524)
T ss_pred Cccccccc--HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHH
Confidence 46778899 899999999999999999999999999999999977999999999999999999998 999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH--H----HHHHhhhhcCC
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH--E----LADVAAVSAGN 183 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~--~----l~~va~ts~~~ 183 (509)
+||+++||||||+|||+++||+++.+++++|+||+.|++||++|.+.++++|+++++++++. + ..++++.+.++
T Consensus 76 ~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~ 155 (524)
T COG0459 76 KQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANS 155 (524)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999864 2 23333444555
Q ss_pred chhhhhHHHHHHHhhcc-----CCcEEEe-cCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC
Q 010494 184 DYTVGKMISDALQQVGR-----NGVVTIE-KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (509)
Q Consensus 184 ~~~l~~li~~Ai~~v~~-----~g~I~v~-~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 257 (509)
++.|++++++|+.+++. ++++.++ .|++..|+ ++++|++|++||.+|||+++ +.++||+|+++|++|+
T Consensus 156 ~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~ 229 (524)
T COG0459 156 DEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLE 229 (524)
T ss_pred hHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCCCCc-----cccccceEEEEccccc
Confidence 78999999999999998 7776554 66666666 99999999999999997443 6899999999999988
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCcc
Q 010494 258 NPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLT 337 (509)
Q Consensus 258 ~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~ 337 (509)
..++..+ ++.....+.+++++++++.++++..++.|.+++..+++||+.|+|+|.+.+.|+|++++|+.++..++++
T Consensus 230 ~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~-- 306 (524)
T COG0459 230 IKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG-- 306 (524)
T ss_pred cccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH--
Confidence 8777666 6666666667777777777777777777777777777777777777777777777777777777776543
Q ss_pred ccCCCccccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhcCCeEEEEeccCChh
Q 010494 338 LDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEIT-EERFQKNILNERIARLSGGIAILQVGAQTVV 416 (509)
Q Consensus 338 ~~~~~~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~-~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~ 416 (509)
+ ....+|.|..+.+.++.+....|.+. ..++++. .++|+++.+++|.++ .++++||+|||+|+.
T Consensus 307 -~--~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate~ 371 (524)
T COG0459 307 -E--RLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATEV 371 (524)
T ss_pred -H--HHHHccCceEEeecccCceeecCccc-----------cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccHh
Confidence 1 34556666666666666655555320 1222333 567888899999988 899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Q 010494 417 ELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNF 495 (509)
Q Consensus 417 ~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ 495 (509)
+++|++|+++|||+++|+++++| +|||||++|++++..|+++....++.+|++|+++|++||+.||++|++|||+||.+
T Consensus 372 ~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~ 451 (524)
T COG0459 372 ELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIE 451 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999 99999999999999999884334342444699999999999999999999999999
Q ss_pred HHHHHhcccC
Q 010494 496 VVDQVSAHKC 505 (509)
Q Consensus 496 ii~~l~~~~~ 505 (509)
++.+|++.+.
T Consensus 452 v~~~L~~~~~ 461 (524)
T COG0459 452 VLSKLRSAHA 461 (524)
T ss_pred HHHHHHhccc
Confidence 9999999765
|
|
| >cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-79 Score=652.05 Aligned_cols=383 Identities=20% Similarity=0.311 Sum_probs=352.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
++++..|+.++..+++++++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~~GDGT 90 (480)
T cd03337 15 RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCC------chhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~l~~l 190 (509)
||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +. .|.++++|++++ ++.|+++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~l 170 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNL 170 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 799999999984 5789999
Q ss_pred HHHHHHhhccC--C---------cE--EEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC
Q 010494 191 ISDALQQVGRN--G---------VV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (509)
Q Consensus 191 i~~Ai~~v~~~--g---------~I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~ 257 (509)
+++|+..++++ + .| ...+|++++|+ ++++|++|++++.+| +|+++++||+|++++++++
T Consensus 171 v~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (480)
T cd03337 171 ALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLE 242 (480)
T ss_pred HHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcc
Confidence 99999999764 2 13 34579999998 999999999998876 4788999999999999887
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCcc
Q 010494 258 NPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLT 337 (509)
Q Consensus 258 ~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~ 337 (509)
. |||++++|++.++++|..| +|+||+ ++++++|+|||++|||++++ +
T Consensus 243 ~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~L~rIa~~tGa~ii~-----~ 289 (480)
T cd03337 243 Y-----------------LVITEKGVSDLAQHYLVKA------GITALR-----RVRKTDNNRIARACGATIVN-----R 289 (480)
T ss_pred e-----------------EEEeCCCccHHHHHHHHHC------CcEEEE-----eCCHHHHHHHHHHHCCEEec-----c
Confidence 5 8999999999999999887 478887 57789999999999999999 5
Q ss_pred ccCCCccccCc-ceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccC
Q 010494 338 LDKAGKEVLGT-AIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQ 413 (509)
Q Consensus 338 ~~~~~~~~lG~-~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~ 413 (509)
+++++++.||+ |+.+++ +++++++|++|+++ +++||+|||+
T Consensus 290 ~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~ 334 (480)
T cd03337 290 PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-----------------------------------KACTILLRGA 334 (480)
T ss_pred hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-----------------------------------CEEEEEEECC
Confidence 88889999999 455543 45788999998654 4889999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010494 414 TVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVN 492 (509)
Q Consensus 414 t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d 492 (509)
|+.+++|.+|+++||+++++++++++ +|||||++|+++|.+|+++++..++.+| +++++|++||++||++||+|||+|
T Consensus 335 t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~La~NaG~d 413 (480)
T cd03337 335 SKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQ-WPYKAVASALEVIPRTLAQNCGAN 413 (480)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999996 9999999999999999998877888888 489999999999999999999999
Q ss_pred hHHHHHHHhcc
Q 010494 493 GNFVVDQVSAH 503 (509)
Q Consensus 493 ~~~ii~~l~~~ 503 (509)
+.+++.+|++.
T Consensus 414 ~~~~l~~l~~~ 424 (480)
T cd03337 414 VIRTLTELRAK 424 (480)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-78 Score=650.06 Aligned_cols=399 Identities=22% Similarity=0.336 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC--CCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCC
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK--YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~--~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GD 117 (509)
+++|+.|+.|+..|+++|+|||||+||+|||+++ +|+++|||||+||+++|+++||. |+|++++|++||+++||
T Consensus 12 ~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GD 87 (517)
T cd03336 12 ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHHHhHhCC
Confidence 7899999999999999999999999999999998 59999999999999999999998 99999999999999999
Q ss_pred CcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC-----cH-HHHHHhhhhcCC------ch
Q 010494 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-----DH-ELADVAAVSAGN------DY 185 (509)
Q Consensus 118 GTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~-~l~~va~ts~~~------~~ 185 (509)
||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +. .|.++|+|++++ ++
T Consensus 88 GTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~ 167 (517)
T cd03336 88 GTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKE 167 (517)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHH
Confidence 9999999999999999999999999999999999999999999999999884 12 789999987764 58
Q ss_pred hhhhHHHHHHHhhccC---Cc--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC---
Q 010494 186 TVGKMISDALQQVGRN---GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK--- 257 (509)
Q Consensus 186 ~l~~li~~Ai~~v~~~---g~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~--- 257 (509)
.|++++++|+.+++.. .. |...+|++++|+ .+++|+++++++.+ .|+++++||+|+++|++++
T Consensus 168 ~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~--------~~~~~~~n~kIli~~~~le~~~ 238 (517)
T cd03336 168 HFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 238 (517)
T ss_pred HHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCC--------CCCCeeccccEEEEecCCCccc
Confidence 9999999999999632 22 344689999999 89999999988643 2577899999999999754
Q ss_pred -----------CHHHHHH-----------HHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCcc
Q 010494 258 -----------NPKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (509)
Q Consensus 258 -----------~~~~l~~-----------~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~ 315 (509)
+++++.+ .++.+.+.|++++++++.|++.++++|..+ +|+||++|+ +
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v~-----~ 307 (517)
T cd03336 239 IKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHAD-----F 307 (517)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecCC-----H
Confidence 5565533 367888999999999999999999998776 579998765 4
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHH
Q 010494 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (509)
Q Consensus 316 ~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 392 (509)
.+|+|||++|||++++ +++++++++||+|+.|+. +++++++|.+|+++
T Consensus 308 ~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~------------------------ 358 (517)
T cd03336 308 DGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAG------------------------ 358 (517)
T ss_pred HHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCCC------------------------
Confidence 5799999999999999 688999999999999984 46799999988643
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHH
Q 010494 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (509)
Q Consensus 393 ~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (509)
+++||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|..|+++++..++++| +++
T Consensus 359 -----------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 426 (517)
T cd03336 359 -----------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKS-LAI 426 (517)
T ss_pred -----------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHH-HHH
Confidence 589999999999999999999999999999999998 9999999999999999999877778888 589
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 472 EIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 472 ~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 427 ~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~ 458 (517)
T cd03336 427 EAFAKALRQLPTIIADNAGYDSAELVAQLRAA 458 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999864
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-78 Score=654.32 Aligned_cols=399 Identities=22% Similarity=0.325 Sum_probs=357.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
++++..|+.+|..|+++|++||||+||||||++++|+++|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~~~GDGT 92 (531)
T TIGR02346 17 EEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQENEIGDGT 92 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCCh
Confidence 569999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCc-ccCc---H-HHHHHhhhhcCC-----chhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR-EVED---H-ELADVAAVSAGN-----DYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~-~v~~---~-~l~~va~ts~~~-----~~~l~~ 189 (509)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++ ++++ . .|.+++++++++ ++.|++
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~ 172 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQ 172 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999986 7644 3 788998888743 789999
Q ss_pred HHHHHHHhhccCC--c-----E--EEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC----
Q 010494 190 MISDALQQVGRNG--V-----V--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (509)
Q Consensus 190 li~~Ai~~v~~~g--~-----I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 256 (509)
++++|+.++++++ . | ...+|++++|+ ++++|++|++++. .+++.++||||+++++++
T Consensus 173 l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~k~i~n~kI~l~~~~l~~~~ 242 (531)
T TIGR02346 173 LVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSVKRVKNAKVAVFSCPLDTAT 242 (531)
T ss_pred HHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCceeccCCCEEEEecCcCCCc
Confidence 9999999998754 2 2 23489999988 9999999999832 245689999999998753
Q ss_pred ---------CCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccc
Q 010494 257 ---------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (509)
Q Consensus 257 ---------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~ 316 (509)
+++++ +.++++++.+.|+||||++++|++.++++|..+ +|+||++|+++
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~~~----- 311 (531)
T TIGR02346 243 TETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPSKF----- 311 (531)
T ss_pred ccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCCHH-----
Confidence 34333 456788999999999999999999999988654 68999988754
Q ss_pred hHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHH
Q 010494 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNI 393 (509)
Q Consensus 317 ~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 393 (509)
+|+|||.+|||++++ +++++++++||+|+.|++. ++++.+|.++..
T Consensus 312 ~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~-------------------------- 360 (531)
T TIGR02346 312 ELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG-------------------------- 360 (531)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCC--------------------------
Confidence 789999999999998 5888999999999999863 568889987532
Q ss_pred HHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHH
Q 010494 394 LNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAE 472 (509)
Q Consensus 394 l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~ 472 (509)
.++++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+++++...+.+| ++++
T Consensus 361 --------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~-~~~~ 431 (531)
T TIGR02346 361 --------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQ-YAIK 431 (531)
T ss_pred --------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHH
Confidence 25789999999999999999999999999999999999 9999999999999999998877778777 5899
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 473 IFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 473 ~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+|++||++||++||+|||+|+.+++.+|++.
T Consensus 432 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 462 (531)
T TIGR02346 432 KFAEAFEIIPRTLAENAGLNPNEVIPKLYAA 462 (531)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999764
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-76 Score=636.55 Aligned_cols=399 Identities=24% Similarity=0.347 Sum_probs=357.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCC--CCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCC
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKY--GPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~--g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GD 117 (509)
++++..|+.|+..|+++|+|||||+||+|||+++. |+++|||||+||+++|+++||. |+|++++|++||+++||
T Consensus 13 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~qd~~~GD 88 (519)
T TIGR02341 13 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQDDEVGD 88 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHhHhhhCC
Confidence 78999999999999999999999999999999985 9999999999999999999998 99999999999999999
Q ss_pred CcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc-----H-HHHHHhhhhcCCc------h
Q 010494 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-----H-ELADVAAVSAGND------Y 185 (509)
Q Consensus 118 GTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~-~l~~va~ts~~~~------~ 185 (509)
||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++ . .|.++|+|+++++ +
T Consensus 89 GTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~ 168 (519)
T TIGR02341 89 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKD 168 (519)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999853 2 7899999988753 6
Q ss_pred hhhhHHHHHHHhhccC---CcEEE--ecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCC--
Q 010494 186 TVGKMISDALQQVGRN---GVVTI--EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN-- 258 (509)
Q Consensus 186 ~l~~li~~Ai~~v~~~---g~I~v--~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~-- 258 (509)
.|++++++|+..+... ..|.+ .+|++++|+ .+++|+++++++.+ +|++.++||+|+++|++++.
T Consensus 169 ~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~--------~~~~~~~n~~Ili~~~~Le~~~ 239 (519)
T TIGR02341 169 HFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV--------NQPKRIENAKILIANTPMDTDK 239 (519)
T ss_pred HHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------CCceeeccccEEEEecCCCCCc
Confidence 7999999999988432 23443 489999999 89999999998643 35778999999999997642
Q ss_pred ------------HHHHHH-----------HHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCcc
Q 010494 259 ------------PKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (509)
Q Consensus 259 ------------~~~l~~-----------~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~ 315 (509)
++++.. +++.+.+.|++++++++.|++.++++|..+ +|+||++|+ +
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~~-----~ 308 (519)
T TIGR02341 240 VKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA------GVMAIEHAD-----F 308 (519)
T ss_pred cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecCC-----H
Confidence 333322 366888999999999999999999988666 578998775 4
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHH
Q 010494 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (509)
Q Consensus 316 ~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 392 (509)
.+|+|||++|||++++ ++++++++++|+|+.|+. +++++++|.+|+++
T Consensus 309 ~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------------------------ 359 (519)
T TIGR02341 309 EGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLG------------------------ 359 (519)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCCC------------------------
Confidence 5899999999999999 688889899999999974 46789999988643
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHH
Q 010494 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (509)
Q Consensus 393 ~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (509)
+++||+|||+|+.+++|.+|+++||+++++++++++ +||||||+|++++..|+++++..++++| +++
T Consensus 360 -----------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 427 (519)
T TIGR02341 360 -----------EACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEA-LAV 427 (519)
T ss_pred -----------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHH-HHH
Confidence 589999999999999999999999999999999996 9999999999999999998877778787 589
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 472 EIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 472 ~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 428 ~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~ 459 (519)
T TIGR02341 428 EAFARALRQLPTIIADNAGFDSAELVAQLRAA 459 (519)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999874
|
Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. |
| >cd00309 chaperonin_type_I_II chaperonin families, type I and type II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-76 Score=632.18 Aligned_cols=388 Identities=37% Similarity=0.556 Sum_probs=356.9
Q ss_pred hccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhh
Q 010494 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTND 113 (509)
Q Consensus 34 i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~ 113 (509)
..+| ++++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||. ++|+++++++||+
T Consensus 3 ~~~~--~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~~ 76 (464)
T cd00309 3 REFG--EEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQDD 76 (464)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHHh
Confidence 4567 899999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcc--cCcH-HHHHHhhhhcC------Cc
Q 010494 114 LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSRE--VEDH-ELADVAAVSAG------ND 184 (509)
Q Consensus 114 ~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~--v~~~-~l~~va~ts~~------~~ 184 (509)
++||||||+++|+++|++++.+++++|+||+.|++||+.|.+.++++|++++++ +++. .|.++|+|+++ ++
T Consensus 77 ~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~ 156 (464)
T cd00309 77 EVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGD 156 (464)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccch
Confidence 999999999999999999999999999999999999999999999999999998 4455 89999999998 68
Q ss_pred hhhhhHHHHHHHhhcc------CCcEEE--ecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC
Q 010494 185 YTVGKMISDALQQVGR------NGVVTI--EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI 256 (509)
Q Consensus 185 ~~l~~li~~Ai~~v~~------~g~I~v--~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i 256 (509)
+.|++++++|+.++++ .+.|++ .+|+++.|| ++++|++|+++|.+|+| +.+++||+|+++++++
T Consensus 157 ~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~L 228 (464)
T cd00309 157 DFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKL 228 (464)
T ss_pred HHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCCC-------ceeecCceEEEEecCc
Confidence 8999999999999988 455554 489999999 89999999999999874 6789999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCc
Q 010494 257 KNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGL 336 (509)
Q Consensus 257 ~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~ 336 (509)
+. +|+++++|++.++++|..+ +|+||+ ++++++|+|||++|||++++
T Consensus 229 e~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~-----~~~~~~L~~Ia~~tGa~ii~----- 275 (464)
T cd00309 229 EY-----------------VVIAEKGIDDEALHYLAKL------GIMAVR-----RVRKEDLERIAKATGATIVS----- 275 (464)
T ss_pred ce-----------------EEecCCCcCHHHHHHHHHC------CeEEEE-----eCCHHHHHHHHHHhCCEEec-----
Confidence 87 7778888999999998775 578887 46789999999999999999
Q ss_pred cccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccC
Q 010494 337 TLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQ 413 (509)
Q Consensus 337 ~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~ 413 (509)
++++++++.+|+|+.+++. ++++++|.++.. +.++||+|||+
T Consensus 276 ~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-----------------------------------~~~~TIllrG~ 320 (464)
T cd00309 276 RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-----------------------------------GKVATILLRGA 320 (464)
T ss_pred ccccCCcccCccccEEEEEEEcCeeEEEEEecCC-----------------------------------CCEEEEEEeCC
Confidence 5788888999999999864 567888887643 35899999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010494 414 TVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVN 492 (509)
Q Consensus 414 t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d 492 (509)
|+.+++|++|+++||+++++++++++ +|||||++|+++++.|++++...++.+| +++++|++||+.||++|++|||+|
T Consensus 321 t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d 399 (464)
T cd00309 321 TEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQ-LGIEAFADALEVIPRTLAENAGLD 399 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999995 9999999999999999999877777777 589999999999999999999999
Q ss_pred hHHHHHHHhccc
Q 010494 493 GNFVVDQVSAHK 504 (509)
Q Consensus 493 ~~~ii~~l~~~~ 504 (509)
+.+++.+|++.+
T Consensus 400 ~~~~~~~l~~~~ 411 (464)
T cd00309 400 PIEVVTKLRAKH 411 (464)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. |
| >cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-76 Score=633.26 Aligned_cols=388 Identities=22% Similarity=0.311 Sum_probs=350.0
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhh
Q 010494 35 YFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL 114 (509)
Q Consensus 35 ~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~ 114 (509)
.++. ++++..|+.+|..|+++|++||||+||+|||++++|+++|||||+||+++|+++||+ ++|++++|++||++
T Consensus 3 ~~~~-~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~ 77 (472)
T cd03341 3 YSGL-EEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEE 77 (472)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhh
Confidence 3444 789999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcc-cCc---H-HHHHHhhhhcC-----Cc
Q 010494 115 AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSRE-VED---H-ELADVAAVSAG-----ND 184 (509)
Q Consensus 115 ~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~-v~~---~-~l~~va~ts~~-----~~ 184 (509)
+||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ +++ . .+.++++++++ ++
T Consensus 78 ~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 157 (472)
T cd03341 78 IGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNE 157 (472)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchH
Confidence 99999999999999999999999999999999999999999999999999876 543 2 67788887764 36
Q ss_pred hhhhhHHHHHHHhhccC--Cc-------EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc
Q 010494 185 YTVGKMISDALQQVGRN--GV-------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK 255 (509)
Q Consensus 185 ~~l~~li~~Ai~~v~~~--g~-------I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~ 255 (509)
+.|++++++|+.+++++ |. |...+|++++|| ++++|++|++.+. .++++++||+|++++++
T Consensus 158 ~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~ 227 (472)
T cd03341 158 DFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCP 227 (472)
T ss_pred HHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEecc
Confidence 79999999999999875 43 334589999999 9999999986532 34478999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccC
Q 010494 256 IKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMG 335 (509)
Q Consensus 256 i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~ 335 (509)
++. |+||||++++|+++++++|..+ +|+||++|+ +.+|+|||++|||++++
T Consensus 228 Le~--------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~~-----~~~Le~Ia~~tGa~ii~---- 278 (472)
T cd03341 228 FDI--------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKINS-----KFELRRLCRTVGATPLP---- 278 (472)
T ss_pred ccC--------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCEEec----
Confidence 877 8999999999999999987543 689998775 66899999999999999
Q ss_pred ccccCCCccccCcceEEEEec---CeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEecc
Q 010494 336 LTLDKAGKEVLGTAIKVVITK---DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGA 412 (509)
Q Consensus 336 ~~~~~~~~~~lG~~~~i~v~~---~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G 412 (509)
++++++++++|+|+.|++.+ ++|++|++|++. ++++||+|||
T Consensus 279 -~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------------------~~~~TI~lrG 323 (472)
T cd03341 279 -RLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED----------------------------------SKIATIVLRG 323 (472)
T ss_pred -ccccCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------------------------------CCeEEEEEEC
Confidence 58888899999999999754 899999987531 3689999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010494 413 QTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGV 491 (509)
Q Consensus 413 ~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~ 491 (509)
+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++...++.++ +++++|++||++||++|++|||+
T Consensus 324 ~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~L~~NaG~ 402 (472)
T cd03341 324 ATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQ-YAIKKFAEAFEVVPRTLAENAGL 402 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999 9999999999999999998777777776 58999999999999999999999
Q ss_pred ChHHHHHHHhc
Q 010494 492 NGNFVVDQVSA 502 (509)
Q Consensus 492 d~~~ii~~l~~ 502 (509)
|+.+++.+|++
T Consensus 403 d~~~~~~~l~~ 413 (472)
T cd03341 403 DATEVLSELYA 413 (472)
T ss_pred CHHHHHHHHHH
Confidence 99999999975
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. |
| >KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-72 Score=545.89 Aligned_cols=407 Identities=22% Similarity=0.316 Sum_probs=362.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+++|.+|+.+.+.++++++|||||+||||||.+..|+++|||||+|||+.|++-||+ |+|+++++..||.++||||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccccccCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCC------chhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~------~~~l~~l 190 (509)
||+|+||++||+.+.+|+++|+||+.|...|+.|.+.++++|++++.|++ |. .|.+-|+||+|+ ...++.+
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 99999999999999999999999999999999999999999999988765 55 688899999885 4788999
Q ss_pred HHHHHHhhccC--------CcEE--EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC----
Q 010494 191 ISDALQQVGRN--------GVVT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (509)
Q Consensus 191 i~~Ai~~v~~~--------g~I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i---- 256 (509)
.+||+.++-.. ..|+ ++.||.++|+ ++++|++|++.-... ..|..++++||-++.+.|
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEEEecCCC
Confidence 99999998542 1233 3599999999 999999999864421 246688999999987643
Q ss_pred ---------CCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccc
Q 010494 257 ---------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (509)
Q Consensus 257 ---------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~ 316 (509)
++..+ ++++++++++.|.|+++++++|=.++++.|..|-+. .++|++|+ |+.++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~-klkimvik-----dieRe 326 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLA-KLKIMVIK-----DIERE 326 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHH-hCcEEEEc-----cccHh
Confidence 33332 456788999999999999999988888877766653 46899998 78899
Q ss_pred hHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe----cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHH
Q 010494 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT----KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (509)
Q Consensus 317 ~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~----~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 392 (509)
++|.+++.+|+++++ +++.++++.||+++.++.. +.+++-+.|+.++
T Consensus 327 diefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~------------------------ 377 (534)
T KOG0358|consen 327 DIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA------------------------ 377 (534)
T ss_pred hHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecC------------------------
Confidence 999999999999999 6999999999999999753 4477888876543
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHH
Q 010494 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (509)
Q Consensus 393 ~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (509)
|..++|++||++...++|.+|++|||||++|+.++.. .+||||+.|++++..|.+++....+.+.+ .+
T Consensus 378 ----------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~y-c~ 446 (534)
T KOG0358|consen 378 ----------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAY-CW 446 (534)
T ss_pred ----------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhH-HH
Confidence 5678999999999999999999999999999999987 99999999999999999999988898886 59
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 472 EIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 472 ~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
+.|++|||.+|.+||||||++|.+++.+|++.+
T Consensus 447 rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~h 479 (534)
T KOG0358|consen 447 RAFADALEVIPYTLAENAGLNPIATVTELRNRH 479 (534)
T ss_pred HHHHHHHhcccHhHHhhCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999998763
|
|
| >PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=583.77 Aligned_cols=386 Identities=30% Similarity=0.499 Sum_probs=349.1
Q ss_pred HHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHH
Q 010494 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAE 132 (509)
Q Consensus 53 la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~ 132 (509)
|+++|++||||+|++|||+++.|+++|||||+||+++++++||+ ++|+++++++|++++||||||+|+|+++|+++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH--HHHHHhhhhcCCc------hhhhhHHHHHHHhhccC---
Q 010494 133 GVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH--ELADVAAVSAGND------YTVGKMISDALQQVGRN--- 201 (509)
Q Consensus 133 ~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~--~l~~va~ts~~~~------~~l~~li~~Ai~~v~~~--- 201 (509)
+.+++++|+||..|++||+.|.+.+++.|++++++++.. .++++|+|+++++ +.|++++++|+..+..+
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999988763 8999999999987 89999999999443221
Q ss_pred Cc--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHH------------------
Q 010494 202 GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKD------------------ 261 (509)
Q Consensus 202 g~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~------------------ 261 (509)
+. +....|++++|| ++++|++|+++|.++ +|++.+++|+|++++++++...+
T Consensus 157 ~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 228 (485)
T PF00118_consen 157 DNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSK 228 (485)
T ss_dssp GGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHH
T ss_pred cchhhhhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHh
Confidence 11 334588888998 899999999999887 46778899999999998876655
Q ss_pred -----HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCc
Q 010494 262 -----MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGL 336 (509)
Q Consensus 262 -----l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~ 336 (509)
+.++++++.+.|+|+||++++|++.++++|..++ |.+++ ++++++|++|+.+||+++++
T Consensus 229 ~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~------I~~i~-----~v~~~~l~~i~~~tg~~ii~----- 292 (485)
T PF00118_consen 229 QEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNG------ILVIR-----RVSKEDLERIARATGASIIS----- 292 (485)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCT------HEEES-----SEHHHHHHHHHHHHTSBEBS-----
T ss_pred hhhhhhccccceEeeeccceeeeecccccccchhhhhhh------hhccc-----cchHHHHHhhhcccCCcEec-----
Confidence 7889999999999999999999999999998875 45554 66789999999999999999
Q ss_pred cccCCCccccCcceEE---EEecCeEEEEec--CCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEec
Q 010494 337 TLDKAGKEVLGTAIKV---VITKDSTLIVTD--GSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVG 411 (509)
Q Consensus 337 ~~~~~~~~~lG~~~~i---~v~~~~~~~~~g--~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~ 411 (509)
++++++++.+|+|+.+ ++++++|+++++ | .++.++||+||
T Consensus 293 ~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~-----------------------------------~~~~~~Till~ 337 (485)
T PF00118_consen 293 SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGC-----------------------------------LSSKICTILLR 337 (485)
T ss_dssp SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSE-----------------------------------SSSSEEEEEEE
T ss_pred ccccccchhhhhhhhhhhcccccccccccccccc-----------------------------------cccCceEEEec
Confidence 5788888889999999 567899999984 3 24578999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010494 412 AQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAG 490 (509)
Q Consensus 412 G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG 490 (509)
|+|+.+++|++++++||+++++++++++ +|||||++|++|+++|++++...++.++ +++++|++||+.||++|++|||
T Consensus 338 g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG 416 (485)
T PF00118_consen 338 GPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQ-LAIEAFADALESIPKTLAQNAG 416 (485)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHTTHHHHHHHHHTT
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchh-hhHHHHHHHHHHhhhhhhhccC
Confidence 9999999999999999999999999987 9999999999999999988887777766 5899999999999999999999
Q ss_pred CChHHHHHHHhc
Q 010494 491 VNGNFVVDQVSA 502 (509)
Q Consensus 491 ~d~~~ii~~l~~ 502 (509)
+|+.+++++|++
T Consensus 417 ~~~~~~~~~l~~ 428 (485)
T PF00118_consen 417 LDSSEVISKLKS 428 (485)
T ss_dssp STHHHHHHHHHH
T ss_pred CCceeeehhhHh
Confidence 999999999988
|
Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A .... |
| >KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=508.09 Aligned_cols=400 Identities=24% Similarity=0.359 Sum_probs=352.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC--CCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCC
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK--YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~--~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GD 117 (509)
++||...|.|...+.|+|||||||+||+||+... .|.+.+||||+||||++.+++|+ ||+++++++-||.++||
T Consensus 17 e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~vQD~EvGD 92 (527)
T KOG0363|consen 17 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 92 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheeccccccccccCC
Confidence 8999999999999999999999999999999863 56799999999999999999999 99999999999999999
Q ss_pred CcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc---H---HHHHHhhhhcCC------ch
Q 010494 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED---H---ELADVAAVSAGN------DY 185 (509)
Q Consensus 118 GTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~---~---~l~~va~ts~~~------~~ 185 (509)
|||||++|+.+||+|+.+|+.+.+||+.|+.||+.|...+++.|.+.++..++ + +|.++|+|.+.+ ++
T Consensus 93 GTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~ke 172 (527)
T KOG0363|consen 93 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKE 172 (527)
T ss_pred CceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999988876542 1 899999998764 58
Q ss_pred hhhhHHHHHHHhhccCCc-----EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc-----
Q 010494 186 TVGKMISDALQQVGRNGV-----VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK----- 255 (509)
Q Consensus 186 ~l~~li~~Ai~~v~~~g~-----I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~----- 255 (509)
+|++++++|+.++...++ |.++.||+++|| .+-+|+.+++.+-. +.|+.++||+||+-|-+
T Consensus 173 hFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT~mDtDK 243 (527)
T KOG0363|consen 173 HFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 243 (527)
T ss_pred HHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecCCCcccc
Confidence 999999999999865432 445699999999 69999999886432 35778999999997642
Q ss_pred ---------CCCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCcc
Q 010494 256 ---------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (509)
Q Consensus 256 ---------i~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~ 315 (509)
+++..+ +...++++.+.|+|+.|-..=|-+...++|... +|+++....|.
T Consensus 244 vKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHADFd---- 313 (527)
T KOG0363|consen 244 VKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA------GIMAIEHADFD---- 313 (527)
T ss_pred eeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc------Ccceeecccch----
Confidence 334322 334578899999999887776776667766544 57888766553
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHH
Q 010494 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (509)
Q Consensus 316 ~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 392 (509)
-+||++..|||.+.+ ++++++...+|+|+.++ ++++++.-|.||.
T Consensus 314 -GiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~-------------------------- 361 (527)
T KOG0363|consen 314 -GIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVK-------------------------- 361 (527)
T ss_pred -hHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeecccc--------------------------
Confidence 579999999999999 79999999999999997 5899999999984
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHH
Q 010494 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (509)
Q Consensus 393 ~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (509)
.|..|||++||+|.+.++|.+|++|||||++...+++. ++.||||.||..+..+.+++...++++-. ++
T Consensus 362 ---------~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~-Ai 431 (527)
T KOG0363|consen 362 ---------LGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEAL-AI 431 (527)
T ss_pred ---------cccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhH-HH
Confidence 24578999999999999999999999999999999997 99999999999999999999999888874 89
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 472 EIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 472 ~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
++|++||.++|.+||.|+|+|+.+++.+|++.+
T Consensus 432 eAfarAL~qlPtiiaDNaG~dsaelva~Lra~h 464 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYDSAELVAQLRAEH 464 (527)
T ss_pred HHHHHHHHhcchhhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
|
|
| >KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-64 Score=505.50 Aligned_cols=405 Identities=23% Similarity=0.324 Sum_probs=357.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
+.+|.+|..++..++++|++||||-|+|||++++.|++.+||||+|||+.+.++||+ +|++++.++.||+++||||
T Consensus 18 ~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~evgDgt 93 (545)
T KOG0360|consen 18 ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDEEVGDGT 93 (545)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhccccccCCc
Confidence 678999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-cCcccCcH---HHHHHhhhhcCC------chhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL-TSREVEDH---ELADVAAVSAGN------DYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~-~s~~v~~~---~l~~va~ts~~~------~~~l~~ 189 (509)
|++++++++|++.+.+|+..++||+.|+.||+.|+..+++++.+ .++|++.. .|.++++|++++ .++|++
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~ 173 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTE 173 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHH
Confidence 99999999999999999999999999999999999999999976 57777653 789999999875 489999
Q ss_pred HHHHHHHhhcc---CC---------cEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc--
Q 010494 190 MISDALQQVGR---NG---------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-- 255 (509)
Q Consensus 190 li~~Ai~~v~~---~g---------~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-- 255 (509)
+++||+..+.- +| +|-+-.|.+..|| .++.|+.+.+...+. .|+..++|+||+++|+.
T Consensus 174 ~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq-------~m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 174 MVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQ-------MMPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred HHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhh-------ccccccccceeeeEecccc
Confidence 99999998742 22 1334589999999 799999999886654 57889999999999974
Q ss_pred -----------CCCHHHHHHH-----------HHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 256 -----------IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 256 -----------i~~~~~l~~~-----------le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
|.+++++.++ ++++...|+|+|+++++|||.++.+|+.+. ++||| +.
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veag------amAVr-----R~ 314 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RC 314 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcc------hhhhH-----HH
Confidence 4566554432 567889999999999999999999998884 67776 78
Q ss_pred ccchHHHHHHHhCCeeeecccCcc-ccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHH
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGLT-LDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~~-~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~ 389 (509)
++.+|++|+++||++++++..++. -+.+.+..+|+|+.|. +++|++.++.|..-
T Consensus 315 ~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka---------------------- 372 (545)
T KOG0360|consen 315 KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA---------------------- 372 (545)
T ss_pred HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc----------------------
Confidence 899999999999999999643331 1356778999999996 46889999987421
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHH
Q 010494 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (509)
Q Consensus 390 ~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~ 468 (509)
..|.|++||++++.++|.+|+++||++++|..++++ +|||||++|.+++-+|++++.+..++||.
T Consensus 373 --------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~l 438 (545)
T KOG0360|consen 373 --------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQL 438 (545)
T ss_pred --------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHH
Confidence 267899999999999999999999999999999999 99999999999999999999988899997
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 469 IGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 469 ~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
++.-|+.||..+|++|+-|++.|+.|++.++++.+
T Consensus 439 -aiaefa~all~ipktla~naa~Dstelvt~lra~H 473 (545)
T KOG0360|consen 439 -AIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYH 473 (545)
T ss_pred -HHHHHHHHHhcchHHHhhhhccccccccccccCCc
Confidence 57778889999999999999999999999998764
|
|
| >KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-62 Score=493.04 Aligned_cols=402 Identities=23% Similarity=0.318 Sum_probs=352.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCC
Q 010494 39 DGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDG 118 (509)
Q Consensus 39 ~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDG 118 (509)
++++...|+++|++++++++|+|||+||||||+|..|++.+|||.+||+|+++++||+ |||++++++.|+++.|||
T Consensus 24 ~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~iGDg 99 (537)
T KOG0362|consen 24 EEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEIGDG 99 (537)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhhCCC
Confidence 4889999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCc-ccCcH-HHHHHhhhh-----cCCchhhhhHH
Q 010494 119 CTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR-EVEDH-ELADVAAVS-----AGNDYTVGKMI 191 (509)
Q Consensus 119 TTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~-~v~~~-~l~~va~ts-----~~~~~~l~~li 191 (509)
|+++|+|+++||++|.++|..|++|.+|++||+.|.+.+++.|.++.+ .+.|. +...+++++ ..+++.+++++
T Consensus 100 tnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lV 179 (537)
T KOG0362|consen 100 TNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLV 179 (537)
T ss_pred ceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754 22222 222333333 34579999999
Q ss_pred HHHHHhhccCC-----c--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc---------
Q 010494 192 SDALQQVGRNG-----V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK--------- 255 (509)
Q Consensus 192 ~~Ai~~v~~~g-----~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~--------- 255 (509)
++|+..+.+.+ + +.+..|+++++| .+++|++|++. +++....-+.++|.++.|+
T Consensus 180 a~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~---------~eG~v~~ak~arvAvf~cP~d~~~TEtk 249 (537)
T KOG0362|consen 180 AKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRD---------PEGEVKSAKDARVAVFACPFDIAQTETK 249 (537)
T ss_pred HHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccc---------cCCcccccccceeEEEecCCCcccccCc
Confidence 99999998863 1 345699999999 89999999987 3455567788999999987
Q ss_pred ----CCCHHHHHHH-----------HHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHH
Q 010494 256 ----IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDD 320 (509)
Q Consensus 256 ----i~~~~~l~~~-----------le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ 320 (509)
|++++++.+| ++.+...|+++|++...+++.+|.++ |++ +|++++.++ +.+|.|
T Consensus 250 gTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~S-----k~eLrr 318 (537)
T KOG0362|consen 250 GTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQINS-----KFDLRR 318 (537)
T ss_pred ceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEecc-----HhhHHH
Confidence 6777776653 56778899999999999999888664 765 699999876 678999
Q ss_pred HHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010494 321 IAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNER 397 (509)
Q Consensus 321 ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r 397 (509)
+++..||.+++ .+..+.+..+|+|+++.. +++.++.|.....
T Consensus 319 lcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~------------------------------ 363 (537)
T KOG0362|consen 319 LCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST------------------------------ 363 (537)
T ss_pred HHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccC------------------------------
Confidence 99999999999 588888899999999964 5666666653211
Q ss_pred HhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHH
Q 010494 398 IARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKR 476 (509)
Q Consensus 398 ~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~ 476 (509)
.+.++||++||+|+..+|+.||.+.|++++.+...+++ ++||+|++|+++++.|.++....++.+|+ +++.|++
T Consensus 364 ----~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~-Aik~fa~ 438 (537)
T KOG0362|consen 364 ----GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQL-AIKKFAE 438 (537)
T ss_pred ----CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchh-HHHHHHH
Confidence 13589999999999999999999999999999999998 99999999999999999999999999996 7999999
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcccC
Q 010494 477 ALSYPTKLIAKNAGVNGNFVVDQVSAHKC 505 (509)
Q Consensus 477 AL~~~~~~L~~NaG~d~~~ii~~l~~~~~ 505 (509)
||+.+|++|+||||++..+++.+|++-+.
T Consensus 439 Ale~~PktlaEnagl~~~evia~ly~~h~ 467 (537)
T KOG0362|consen 439 ALEVLPKTLAENAGLAVTEVIAKLYAVHQ 467 (537)
T ss_pred HhccccHhHHHhcCCcHHHHHHHHHHhhc
Confidence 99999999999999999999999977543
|
|
| >KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=487.18 Aligned_cols=417 Identities=19% Similarity=0.284 Sum_probs=373.3
Q ss_pred CCcceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccch
Q 010494 4 LSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDG 83 (509)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG 83 (509)
|-.|+|.++.+++|.+ | ..+...|+++.++++|.++++|||+.|.||+.++.|.+..||||
T Consensus 1 m~apv~~~~~~~~re~-----------------g--~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg 61 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRES-----------------G--RKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDG 61 (527)
T ss_pred CCCceeecccccCcCc-----------------c--ccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCc
Confidence 6789999999999986 2 23445788899999999999999999999999999999999999
Q ss_pred hhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Q 010494 84 ETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL 163 (509)
Q Consensus 84 ~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~ 163 (509)
..|+++|++.||+ |+-+.+++.+||+++|||||||++|++++|.++..++++|+||+.|+++|.+|++.++..+++
T Consensus 62 ~ailrei~Vahpa----aksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~ 137 (527)
T KOG0364|consen 62 NAILREIDVAHPA----AKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDK 137 (527)
T ss_pred HHHHHHHhhcCcc----hhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCcH---HHHHHhhhhcC------CchhhhhHHHHHHHhhccC-Cc---------EEEecCCCcccceEEeeceEE
Q 010494 164 TSREVEDH---ELADVAAVSAG------NDYTVGKMISDALQQVGRN-GV---------VTIEKGKCTENSLEIVEGMRF 224 (509)
Q Consensus 164 ~s~~v~~~---~l~~va~ts~~------~~~~l~~li~~Ai~~v~~~-g~---------I~v~~g~~~~ds~~li~Gi~~ 224 (509)
++++++.+ .+.++...+.. +.+..+++..+|+++++.+ |. +.+.+|+.+++| ++++|+.+
T Consensus 138 ~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~ 216 (527)
T KOG0364|consen 138 ISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMI 216 (527)
T ss_pred hcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccccc-ceecceee
Confidence 98887743 66666666543 4578899999999999876 32 234699999999 89999999
Q ss_pred eccCCCCccccCcCCceeEeeceeeEeecccCCC------------------------HHHHHHHHHHHHhcCCCeEEEe
Q 010494 225 DRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN------------------------PKDMFKILDSAVKEKYPIVIVA 280 (509)
Q Consensus 225 ~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~------------------------~~~l~~~le~i~~~~~~lvi~~ 280 (509)
.+...||. |+..++||+|+++|+++.. -+++..+.+.+....+++|++.
T Consensus 217 nkdv~Hpk-------mrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVite 289 (527)
T KOG0364|consen 217 NKDVTHPK-------MRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITE 289 (527)
T ss_pred ccccCcHH-------HHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEec
Confidence 99999984 6778999999999997521 1234567788889999999999
Q ss_pred ccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc-ceEEEE---ec
Q 010494 281 EDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT-AIKVVI---TK 356 (509)
Q Consensus 281 ~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~-~~~i~v---~~ 356 (509)
+++++.+.++|..++ +.++| ++|+.+-.|++++||+++++ +++++...+.|+ |+.+++ ++
T Consensus 290 kG~sdla~hyl~k~~------iT~~r-----r~rKtDn~ria~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gd 353 (527)
T KOG0364|consen 290 KGVSDLAQHYLLKAN------ITAIR-----RLRKTDNNRIARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGD 353 (527)
T ss_pred cchhHHHHHHHHhcC------chhhh-----hhhccccchhhhhcCceecc-----ChhhCchhccCcccceeeeeccCc
Confidence 999999999998885 45544 88999999999999999999 699999999995 888886 57
Q ss_pred CeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHH
Q 010494 357 DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAI 436 (509)
Q Consensus 357 ~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al 436 (509)
+.|+||+.|.+|+ .|||++||+|..+++|.+|.+.||+.++|+.+
T Consensus 354 eyf~f~~~Ck~pk-----------------------------------aCtillrg~skdil~e~ernlqda~~varn~i 398 (527)
T KOG0364|consen 354 EYFTFFTDCKEPK-----------------------------------ACTILLRGPSKDILNEVERNLQDAMGVARNVI 398 (527)
T ss_pred hhhhhhhhcCCCc-----------------------------------ceEEEeccCchhHHHHHHHHhhhHHHHHHHhc
Confidence 8999999999884 68999999999999999999999999999999
Q ss_pred hhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 437 EEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 437 ~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
-++ ++|||||+||.+|+.|.+.+...++.+|+ .+++++.||+.+|++|++|||.++...+..+++.
T Consensus 399 i~PklvPGGGAtEMAvs~~L~qksa~~~GVekw-PY~Ava~AlEviPrtliqncGan~Ir~lTalr~k 465 (527)
T KOG0364|consen 399 INPKLVPGGGATEMAVSHELRQKSALMTGVEKW-PYGAVAGALEVIPRTLIQNCGANPIRALTALRAK 465 (527)
T ss_pred cCCcccCCccHHHHHHHHHHHHHHhhccchhcc-chhhhhcCceeccHHHHhhcCccHHHHHHHHHHH
Confidence 998 99999999999999999988788888887 5999999999999999999999999999988765
|
|
| >KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-58 Score=455.40 Aligned_cols=400 Identities=21% Similarity=0.340 Sum_probs=352.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
..|.+.|+.+...+.+.+++.+||+|..||++++.|++++|+||.+.+++|+++||. +-++..+|..||+..||||
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~tGDGt 91 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDITGDGT 91 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhcccCCCc
Confidence 357778888888999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHhhhhcCCc------hhhhhHHHH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND------YTVGKMISD 193 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~l~~va~ts~~~~------~~l~~li~~ 193 (509)
||+|+|.++|+++|...+..|+||..|..||+.|.+.++++|++.+.+++.+.|..+++++++.+ +.+++++++
T Consensus 92 tS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~ 171 (520)
T KOG0359|consen 92 TSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVD 171 (520)
T ss_pred ceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHh
Confidence 99999999999999999999999999999999999999999998888887778999999999863 678889999
Q ss_pred HHHhhcc-CCcEE-------EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCC--------
Q 010494 194 ALQQVGR-NGVVT-------IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK-------- 257 (509)
Q Consensus 194 Ai~~v~~-~g~I~-------v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~-------- 257 (509)
|+..+.+ ++.|. .-+..+..|+ .+++|+++|+|-.||- ||+.++|++||++|.+++
T Consensus 172 aVl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~Eins 243 (520)
T KOG0359|consen 172 SVLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEINS 243 (520)
T ss_pred hheeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeecccccccccccc
Confidence 9998873 33321 1255677888 7999999999999984 788999999999997532
Q ss_pred -----CHHHHH-----------HHHHHHHhcCC---CeEEE-eccchHHHHHHHHHhcccccceeeeecCcccccCccch
Q 010494 258 -----NPKDMF-----------KILDSAVKEKY---PIVIV-AEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (509)
Q Consensus 258 -----~~~~l~-----------~~le~i~~~~~---~lvi~-~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~ 317 (509)
+.+|-. +-+.++.+.+. .+|++ +++|||..|+.|..+ +|+|+| +-++..
T Consensus 244 gffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~------gIlaLR-----RAKRRN 312 (520)
T KOG0359|consen 244 GFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKS------GILALR-----RAKRRN 312 (520)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhc------chHHHH-----HHhhhh
Confidence 233211 12334444432 45555 899999999999877 467776 667889
Q ss_pred HHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010494 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (509)
Q Consensus 318 L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 394 (509)
|||+..+|||..+. +++|++++.||+|+.+++ ++++|+|+++|.+|
T Consensus 313 mERL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p-------------------------- 361 (520)
T KOG0359|consen 313 MERLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP-------------------------- 361 (520)
T ss_pred HHHHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCC--------------------------
Confidence 99999999999998 699999999999999985 69999999999988
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHH
Q 010494 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (509)
Q Consensus 395 ~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (509)
+.|||+++|||.+.+.+.+++++|++++++++++++ ++||+|+.|..++.+|+...++.+++.+ +|+++
T Consensus 362 ---------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~-~g~~a 431 (520)
T KOG0359|consen 362 ---------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAY-LGVKA 431 (520)
T ss_pred ---------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhh-hhHHH
Confidence 368999999999999999999999999999999998 9999999999999999988888888888 59999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 474 FKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 474 ~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|++||..+|++|++|+|+|+.+.+.+|...
T Consensus 432 fa~all~ipk~La~nsg~D~qe~l~~l~~e 461 (520)
T KOG0359|consen 432 FANALLVIPKTLAKNSGLDEQETLVSLKKE 461 (520)
T ss_pred HHhhhhhhhHHHHHhcCCchHHHHHHHHHh
Confidence 999999999999999999999999887554
|
|
| >KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=420.33 Aligned_cols=313 Identities=25% Similarity=0.357 Sum_probs=288.3
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhh
Q 010494 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (509)
Q Consensus 32 k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~ 111 (509)
|...+| -++.++++-+..+++.++++|+||+|++|+++.+.|++.+|||| .|+. ++|+...+.+|
T Consensus 21 ~~Ri~G--~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I----akLmv~LS~sq 85 (400)
T KOG0357|consen 21 KDRLFG--LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI----AKLIVILSKSQ 85 (400)
T ss_pred CchhhH--HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH----HHHHHHhcccc
Confidence 345667 68899999999999999999999999999999999999999999 6788 99999999999
Q ss_pred hhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHhhhhcCCchhhhhHH
Q 010494 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMI 191 (509)
Q Consensus 112 d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~l~~va~ts~~~~~~l~~li 191 (509)
|.++|||||.+++|++.+++++..++..|+||..|..||+.+...+++.|++.+.+++
T Consensus 86 d~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------------- 143 (400)
T KOG0357|consen 86 DDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------------- 143 (400)
T ss_pred hhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------------
Confidence 9999999999999999999999999999999999999999999999999887665432
Q ss_pred HHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHHh
Q 010494 192 SDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVK 271 (509)
Q Consensus 192 ~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~ 271 (509)
+..+++.+++
T Consensus 144 ----------------------------------------------------------------------f~emi~~vK~ 153 (400)
T KOG0357|consen 144 ----------------------------------------------------------------------FEEMIQQIKE 153 (400)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHh
Confidence 3557889999
Q ss_pred cCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceE
Q 010494 272 EKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIK 351 (509)
Q Consensus 272 ~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~ 351 (509)
.|.+++||+|+|||+|-++|..|++ -||||. ...++|-||++|||+++. ++++++++.||+|+.
T Consensus 154 ~ga~l~icqwgfddeanhll~~n~l------pavrwV-----GGpEiEliAiaT~grIVp-----rF~eL~~~kLG~agl 217 (400)
T KOG0357|consen 154 TGANLAICQWGFDDEANHLLLQNNL------PAVRWV-----GGPEIELIAIATGGRIVP-----RFSELTAEKLGFAGL 217 (400)
T ss_pred hCCcEEEEecccCchhhhHHhhcCC------Cceeec-----CCcceEEEEeecCCeeec-----cHhhhCHhhccccce
Confidence 9999999999999999999999965 477744 466889999999999999 699999999999999
Q ss_pred EEE-----ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHH
Q 010494 352 VVI-----TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIE 426 (509)
Q Consensus 352 i~v-----~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~ 426 (509)
|.. ++|++.+++.|++.+ ..||.|||.+..+++|.+|++|
T Consensus 218 VrE~sfgttkdkmlviEqc~nsk-----------------------------------aVTifvRg~Nkmii~Eakrslh 262 (400)
T KOG0357|consen 218 VREISFGTTKDKMLVIEQCKNSK-----------------------------------AVTIFVRGGNKMIIEEAKRSLH 262 (400)
T ss_pred EEEEecccccceEEEEEecCCCc-----------------------------------eEEEEEecCcceeHHHHHHHhh
Confidence 974 489999999998764 5689999999999999999999
Q ss_pred HHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 427 DALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 427 dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
||||++|+.+++. +|+|||++|+.||-++...+.++++.||+ ++.+|++||++||..||||+|++|.+.++++++.
T Consensus 263 dalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqy-a~rafa~ale~ipmalaensgl~pi~~ls~~ka~ 339 (400)
T KOG0357|consen 263 DALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQY-AFRAFADALESIPMALAENSGLDPIETLSDVKAR 339 (400)
T ss_pred hhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHH-HHHHHHHHHhhcchhhhhccCCCchhhhhHhHHH
Confidence 9999999999998 99999999999999999999999999997 7999999999999999999999999999998765
|
|
| >cd03333 chaperonin_like chaperonin_like superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=234.42 Aligned_cols=191 Identities=33% Similarity=0.462 Sum_probs=168.2
Q ss_pred HHHHHhhhhcC-----CchhhhhHHHHHHHhhccC------CcE--EEecCCCcccceEEeeceEEeccCCCCccccCcC
Q 010494 172 ELADVAAVSAG-----NDYTVGKMISDALQQVGRN------GVV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQ 238 (509)
Q Consensus 172 ~l~~va~ts~~-----~~~~l~~li~~Ai~~v~~~------g~I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~ 238 (509)
.|.++|+|+++ +++.|++++++|+..++++ +.| ...+|+++.|| ++++|++|+++|.+|+
T Consensus 3 ~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~------ 75 (209)
T cd03333 3 LLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY------ 75 (209)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC------
Confidence 47889999998 7899999999999999872 444 44699999999 8999999999999986
Q ss_pred CceeEeeceeeEeecccCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchH
Q 010494 239 KRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL 318 (509)
Q Consensus 239 ~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L 318 (509)
|+..++||+|+++++++.. +|+++++|++.++++|..+ +|+||+ ++++++|
T Consensus 76 -m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~-----~~~~~~l 126 (209)
T cd03333 76 -MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVR-----RVKKEDL 126 (209)
T ss_pred -CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEE-----eCCHHHH
Confidence 5778999999999999876 8888999999999998775 578887 5678999
Q ss_pred HHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 010494 319 DDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILN 395 (509)
Q Consensus 319 ~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 395 (509)
+|||++|||++++ ++++++++.||+|+++++. ++++++|.+|..+
T Consensus 127 ~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~--------------------------- 174 (209)
T cd03333 127 ERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG--------------------------- 174 (209)
T ss_pred HHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCCC---------------------------
Confidence 9999999999999 5888889999999999975 4568899887543
Q ss_pred HHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhh
Q 010494 396 ERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438 (509)
Q Consensus 396 ~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~ 438 (509)
..+||+|||+|+.+++|.+|+++||++++++++++
T Consensus 175 --------~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 --------KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred --------CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 58899999999999999999999999999999864
|
Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. |
| >cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=229.48 Aligned_cols=198 Identities=16% Similarity=0.179 Sum_probs=167.1
Q ss_pred CchhhhhHHHHHHHhhccC----------CcE--EEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeE
Q 010494 183 NDYTVGKMISDALQQVGRN----------GVV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLL 250 (509)
Q Consensus 183 ~~~~l~~li~~Ai~~v~~~----------g~I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIl 250 (509)
+.+.|++++++|+..+.++ ..| .+.+|+++.|| ++++|++++++..++ +|++.++||||+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 4688999999999988532 123 44699999999 999999999997765 578899999999
Q ss_pred eecccCCC------HHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccC
Q 010494 251 LVDKKIKN------PKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (509)
Q Consensus 251 l~d~~i~~------~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~ 313 (509)
++++++.. +.+ +..+++++.+.|+++|+++++|++.++++|..+ +|++|+ ++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~-----~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVL-----NV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEE-----ec
Confidence 99997642 222 334678899999999999999999999999877 467776 66
Q ss_pred ccchHHHHHHHhCCeeeecccCcc-ccCCCccccCcceEEEEe---c-----CeEEEEecCCChhHHHHHHHHHHHHHhh
Q 010494 314 KSHYLDDIAILTGGLVIRDEMGLT-LDKAGKEVLGTAIKVVIT---K-----DSTLIVTDGSTRAAVEKRISEIRSLAEI 384 (509)
Q Consensus 314 ~~~~L~~ia~~tG~~ii~~~~~~~-~~~~~~~~lG~~~~i~v~---~-----~~~~~~~g~~~~~~i~~ri~~l~~~~~~ 384 (509)
++.+|+|||++|||++++ + .++++++.||+|+.|++. + +++++|+||+.+
T Consensus 160 ~~~dl~rIa~~tGa~ii~-----~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~---------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIIS-----SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE---------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEec-----ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC----------------
Confidence 789999999999999999 4 347888999999999864 2 589999998654
Q ss_pred hhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC
Q 010494 385 TEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG 439 (509)
Q Consensus 385 ~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g 439 (509)
..+||+|||+|+..++|.+|+++||+++++++..++
T Consensus 219 -------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 478999999999999999999999999999998775
|
Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. |
| >KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-10 Score=130.09 Aligned_cols=207 Identities=14% Similarity=0.219 Sum_probs=161.6
Q ss_pred chhhhhHHHHHHHhhccC----------Cc--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEe
Q 010494 184 DYTVGKMISDALQQVGRN----------GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLL 251 (509)
Q Consensus 184 ~~~l~~li~~Ai~~v~~~----------g~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll 251 (509)
.+.+..++.+|...+.++ +. |+.+.+|+..|+ +++.|+++.+...+. .|..++++|+|++
T Consensus 334 ~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~k-------~M~~~~e~prill 405 (1598)
T KOG0230|consen 334 LDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAHK-------RMATKYENPRILL 405 (1598)
T ss_pred HHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhhh-------hhhhhccCCceEE
Confidence 467788888888888764 22 455688898999 999999999886653 5778899999999
Q ss_pred ecccC---------CCHHH--------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCc
Q 010494 252 VDKKI---------KNPKD--------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERK 314 (509)
Q Consensus 252 ~d~~i---------~~~~~--------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~ 314 (509)
+.+++ .+.+. +...+.++...+++++++.++|++.|.++|..- |+.-++ +++
T Consensus 406 l~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~I~lvl--------nvK 474 (1598)
T KOG0230|consen 406 LGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---GISLVL--------NVK 474 (1598)
T ss_pred EecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---CeEEEE--------ecc
Confidence 88753 23222 334567778889999999999999999887443 322222 788
Q ss_pred cchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe--------cCeEEEEecCCChhHHHHHHHHHHHHHhhhh
Q 010494 315 SHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT--------KDSTLIVTDGSTRAAVEKRISEIRSLAEITE 386 (509)
Q Consensus 315 ~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~--------~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~ 386 (509)
...|+||+++|||.|+. +++.++...+|+|..+++. ...++||+||+.+.
T Consensus 475 ~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l----------------- 532 (1598)
T KOG0230|consen 475 RSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL----------------- 532 (1598)
T ss_pred HHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC-----------------
Confidence 89999999999999998 6888999999999999863 23567889987652
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHH-hhCccccCchhHH
Q 010494 387 ERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAI-EEGIVVGGGCSLL 449 (509)
Q Consensus 387 ~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al-~~gvvpGGGa~e~ 449 (509)
=|||++||.+..+++++++-+.-++-++.+.. +.-++.--|+...
T Consensus 533 ------------------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 533 ------------------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred ------------------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 25899999999999999999999988888654 4457777776443
|
|
| >COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00033 Score=76.26 Aligned_cols=90 Identities=20% Similarity=0.172 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCC-eEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchH-HHHHHHhCCeeeecccCcccc
Q 010494 262 MFKILDSAVKEKYP-IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL-DDIAILTGGLVIRDEMGLTLD 339 (509)
Q Consensus 262 l~~~le~i~~~~~~-lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L-~~ia~~tG~~ii~~~~~~~~~ 339 (509)
+..+++.+.+.|.| +++++++|+|.++++|..+ .|++++ ++.++++ ++|+.+|||++++ .++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~-----~v~~~dl~~~l~~~~ga~~v~-----~~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGR-----RVKKEDLGERLAKLGGAKIVS-----VLK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecc-----eecchhhHHHHHHccCceEEe-----ecc
Confidence 34456677889999 8899999999999998776 467665 5667788 7999999999999 689
Q ss_pred CCCccccCc--ceEEEEe---cCeEEEEecCCC
Q 010494 340 KAGKEVLGT--AIKVVIT---KDSTLIVTDGST 367 (509)
Q Consensus 340 ~~~~~~lG~--~~~i~v~---~~~~~~~~g~~~ 367 (509)
+.++..+|. |+.++.. ++++++|.+|.+
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~ 355 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERKA 355 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhhh
Confidence 999999999 9999863 667777777653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 509 | ||||
| 1iok_A | 545 | Crystal Structure Of Chaperonin-60 From Paracoccus | 1e-120 | ||
| 1we3_A | 543 | Crystal Structure Of The Chaperonin Complex Cpn60CP | 1e-118 | ||
| 1aon_A | 547 | Crystal Structure Of The Asymmetric Chaperonin Comp | 1e-117 | ||
| 2eu1_A | 548 | Crystal Structure Of The Chaperonin Groel-E461k Len | 1e-117 | ||
| 1pcq_A | 524 | Crystal Structure Of Groel-Groes Length = 524 | 1e-117 | ||
| 3c9v_A | 526 | C7 Symmetrized Structure Of Unliganded Groel At 4.7 | 1e-117 | ||
| 1sx3_A | 525 | Groel14-(Atpgammas)14 Length = 525 | 1e-117 | ||
| 1ss8_A | 524 | Groel Length = 524 | 1e-117 | ||
| 2yey_A | 524 | Crystal Structure Of The Allosteric-Defective Chape | 1e-117 | ||
| 1gr5_A | 547 | Solution Structure Of Apo Groel By Cryo-Electron Mi | 1e-117 | ||
| 4aaq_A | 548 | Atp-Triggered Molecular Mechanics Of The Chaperonin | 1e-116 | ||
| 1grl_A | 548 | The Crystal Structure Of The Bacterial Chaperonin G | 1e-116 | ||
| 1kp8_A | 547 | Structural Basis For Groel-Assisted Protein Folding | 1e-116 | ||
| 1oel_A | 547 | Conformational Variability In The Refined Structure | 1e-116 | ||
| 3cau_A | 526 | D7 Symmetrized Structure Of Unliganded Groel At 4.2 | 1e-116 | ||
| 1j4z_A | 547 | Structural And Mechanistic Basis For Allostery In T | 1e-116 | ||
| 3rtk_A | 546 | Crystal Structure Of Cpn60.2 From Mycobacterium Tub | 1e-110 | ||
| 1sjp_A | 504 | Mycobacterium Tuberculosis Chaperonin60.2 Length = | 6e-99 | ||
| 1la1_A | 192 | Gro-El Fragment (Apical Domain) Comprising Residues | 3e-45 | ||
| 1fy9_A | 193 | Crystal Structure Of The Hexa-Substituted Mutant Of | 5e-44 | ||
| 1fya_A | 193 | Crystal Structure Of The Hexa-Substituted Mutant Of | 1e-43 | ||
| 1kid_A | 203 | Groel (Hsp60 Class) Fragment (Apical Domain) Compri | 2e-43 | ||
| 3osx_A | 201 | Crystal Structure Of Apical Domain Of Insecticidal | 3e-43 | ||
| 1jon_A | 155 | Groel (Hsp60 Class) Fragment Comprising Residues 19 | 4e-37 | ||
| 3m6c_A | 194 | Crystal Structure Of Mycobacterium Tuberculosis Gro | 1e-36 | ||
| 1dk7_A | 146 | Crystal Structure Of An Isolated Apical Domain Of G | 3e-36 | ||
| 1srv_A | 145 | Thermus Thermophilus Groel (Hsp60 Class) Fragment ( | 2e-32 | ||
| 3p9d_E | 562 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 2e-12 | ||
| 3iyg_H | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 2e-12 | ||
| 3p9d_G | 550 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 5e-11 | ||
| 1q3r_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 6e-10 | ||
| 3iyg_E | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 1e-09 | ||
| 3iyg_D | 518 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 2e-09 | ||
| 1q2v_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 5e-09 | ||
| 1q3s_A | 548 | Crystal Structure Of The Chaperonin From Thermococc | 7e-09 | ||
| 1a6d_B | 543 | Thermosome From T. Acidophilum Length = 543 | 7e-09 | ||
| 3ko1_A | 553 | Cystal Structure Of Thermosome From Acidianus Tengc | 9e-09 | ||
| 3p9d_H | 568 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 3e-08 | ||
| 1a6d_A | 545 | Thermosome From T. Acidophilum Length = 545 | 4e-08 | ||
| 3los_A | 543 | Atomic Model Of Mm-Cpn In The Closed State Length = | 4e-08 | ||
| 3iyf_A | 521 | Atomic Model Of The Lidless Mm-Cpn In The Open Stat | 5e-08 | ||
| 3p9d_D | 528 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 8e-08 | ||
| 3izh_A | 513 | Mm-Cpn D386a With Atp Length = 513 | 1e-07 | ||
| 3j02_A | 491 | Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun | 1e-07 | ||
| 3izn_A | 491 | Mm-Cpn Deltalid With Atp Length = 491 | 1e-07 | ||
| 3izk_A | 491 | Mm-Cpn Rls Deltalid With Atp Length = 491 | 1e-07 | ||
| 3iyg_B | 513 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 2e-07 | ||
| 3iyg_Z | 517 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 3e-07 | ||
| 3p9d_B | 527 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 1e-06 | ||
| 3p9d_C | 590 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 1e-06 | ||
| 3p9d_F | 546 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 5e-06 | ||
| 3iyg_G | 515 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 9e-06 | ||
| 3iyg_A | 529 | Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST | 2e-05 | ||
| 3p9d_A | 559 | The Crystal Structure Of Yeast Cct Reveals Intrinsi | 3e-05 |
| >pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 | Back alignment and structure |
|
| >pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 | Back alignment and structure |
|
| >pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 | Back alignment and structure |
|
| >pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 | Back alignment and structure |
|
| >pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 | Back alignment and structure |
|
| >pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 | Back alignment and structure |
|
| >pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 | Back alignment and structure |
|
| >pdb|1SS8|A Chain A, Groel Length = 524 | Back alignment and structure |
|
| >pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 | Back alignment and structure |
|
| >pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 | Back alignment and structure |
|
| >pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 | Back alignment and structure |
|
| >pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 | Back alignment and structure |
|
| >pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 | Back alignment and structure |
|
| >pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 | Back alignment and structure |
|
| >pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 | Back alignment and structure |
|
| >pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 | Back alignment and structure |
|
| >pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 | Back alignment and structure |
|
| >pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 | Back alignment and structure |
|
| >pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 | Back alignment and structure |
|
| >pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 | Back alignment and structure |
|
| >pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 | Back alignment and structure |
|
| >pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 | Back alignment and structure |
|
| >pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 | Back alignment and structure |
|
| >pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 | Back alignment and structure |
|
| >pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 | Back alignment and structure |
|
| >pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 | Back alignment and structure |
|
| >pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 | Back alignment and structure |
|
| >pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 | Back alignment and structure |
|
| >pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 | Back alignment and structure |
|
| >pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 | Back alignment and structure |
|
| >pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 | Back alignment and structure |
|
| >pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 | Back alignment and structure |
|
| >pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 | Back alignment and structure |
|
| >pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 | Back alignment and structure |
|
| >pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 | Back alignment and structure |
|
| >pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 | Back alignment and structure |
|
| >pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 | Back alignment and structure |
|
| >pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 | Back alignment and structure |
|
| >pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 | Back alignment and structure |
|
| >pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 | Back alignment and structure |
|
| >pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 | Back alignment and structure |
|
| >pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 | Back alignment and structure |
|
| >pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 | Back alignment and structure |
|
| >pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 | Back alignment and structure |
|
| >pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 | Back alignment and structure |
|
| >pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 | Back alignment and structure |
|
| >pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 | Back alignment and structure |
|
| >pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 | Back alignment and structure |
|
| >pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 | Back alignment and structure |
|
| >pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 | Back alignment and structure |
|
| >pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 | Back alignment and structure |
|
| >pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 | Back alignment and structure |
|---|
Score = 566 bits (1462), Expect = 0.0
Identities = 212/474 (44%), Positives = 320/474 (67%), Gaps = 5/474 (1%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
K+V F +D A K+ GV+++A+ V VTLGPKGRNVVL +G P I DG +V +EIE
Sbjct: 3 KDVKFGND--AGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIE 60
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LED EN+G ++V++ ++ ND AGDG TT+ +LAQ +I EG+K +AAGMNP+ + RGI+
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 152 KTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
K + ELK S D +A V +SA +D TVGK+I++A+ +VG+ GV+T+E G
Sbjct: 121 KAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
++ L++VEGM+FDRG+LSPYF+ + VE +LL DKKI N ++M +L++
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
K P++I+AED+E +ALA L+ N +RG++K AA+KAP FG+R+ L DIA LTGG VI
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390
+E+G+ L+KA E LG A +VVI KD+T I+ AA++ R+++IR E +
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450
+ L ER+A+L+GG+A+++VGA T VE+K+K+ R+EDAL+AT+AA+EEG+V GGG +L+R
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
+++K+ ++ N +Q +G ++ RA+ P + I N G + V + V
Sbjct: 421 VASKLADLRG--QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGD 472
|
| >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 | Back alignment and structure |
|---|
Score = 565 bits (1459), Expect = 0.0
Identities = 219/474 (46%), Positives = 326/474 (68%), Gaps = 5/474 (1%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
KEV FN D A ++ GV+++A+ V VTLGPKGRNVV+ +G P+I DG +V KEIE
Sbjct: 4 KEVKFNSD--ARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIE 61
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
L D EN+G ++VR+ +RTND AGDG TT+ +LAQ ++ EG+K +AAGMNP+ + RGI+
Sbjct: 62 LSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGID 121
Query: 152 KTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
+ ++ +K +R V D E+A V +SA + +G+ I++A+Q+VG GV+T+E+ K
Sbjct: 122 VATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENK 181
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
E +E+VEGM+FDRG+LSPYFVT+ K E D +LL +KK+ + + M +L+S +
Sbjct: 182 GMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVI 241
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
+ + P++IVAED+E +ALA L+ NKLRG LK AA+KAP FG+R+ L DIAILTGG VI
Sbjct: 242 QSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVI 301
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390
+++G+ L+ ++LG A KV I KD+T IV +A +E R+S+IR E T +
Sbjct: 302 SEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYD 361
Query: 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450
+ L ER+A+L+GG+A+++VG T +E+K+++ R++DALNAT+AA++EGIVVGGG +L++
Sbjct: 362 REKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQ 421
Query: 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
+ +EG+ N +Q G I +RAL P + IA+NAGV+G V +V
Sbjct: 422 GAKVLEGLSG--ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESS 473
|
| >1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 | Back alignment and structure |
|---|
Score = 565 bits (1458), Expect = 0.0
Identities = 221/476 (46%), Positives = 325/476 (68%), Gaps = 5/476 (1%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M K + F+ A + L+ GV+ VA V VTLGP+GRNVVL+ K+G P I DG TV KE
Sbjct: 1 MAKILVFDEA--ARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKE 58
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
+ELED LENIG +L+++ ++TND+AGDG TT+ +LAQ ++ EG+K +AAG NP+ + RG
Sbjct: 59 VELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRG 118
Query: 150 IEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
IEK +A + ++K + VED + +VA +SA ND VGK+I+DA+++VG+ G++T+E+
Sbjct: 119 IEKAVEAAVEKIKALAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEE 177
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
K E L+ VEG +FD+G++SPYFVT+ + D +L+V+KK+ N +++ IL+
Sbjct: 178 SKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQ 237
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
+ P++I+AED+E +ALA L+ NKLRG L AA+KAP FG+R+ L DIA +TGG
Sbjct: 238 VAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGT 297
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
VI +E+G L+ A +LG A +V ITKD T IV + +E RI+ I+ E T+
Sbjct: 298 VISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSE 357
Query: 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSL 448
+ + L ER+A+L+GG+A+++VGA T ELK+K+ R EDALNAT+AA+EEGIV GGG +L
Sbjct: 358 YAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTL 417
Query: 449 LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
LR + VE + + L ++ GA+I +RAL P + IA+NAG G+ +V Q+ A
Sbjct: 418 LRAISAVEELIKKL-EGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAET 472
|
| >3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 | Back alignment and structure |
|---|
Score = 562 bits (1450), Expect = 0.0
Identities = 207/476 (43%), Positives = 315/476 (66%), Gaps = 7/476 (1%)
Query: 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKE 89
M K + ++ + A + L+ G++ +A+ V VTLGPKGRNVVL+ K+G P I NDG ++ KE
Sbjct: 1 MAKTIAYDEE--ARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKE 58
Query: 90 IELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARG 149
IELEDP E IG +LV++ +T+D+AGDG TT+ +LAQ L+ EG++ +AAG NP+ + RG
Sbjct: 59 IELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRG 118
Query: 150 IEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEK 208
IEK + + L ++EVE ++A AA+SA D ++G +I++A+ +VG GV+T+E+
Sbjct: 119 IEKAVEKVTETLLKGAKEVETKEQIAATAAISA-GDQSIGDLIAEAMDKVGNEGVITVEE 177
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268
LE+ EGMRFD+G++S YFVTD +++ D +LLV K+ KD+ +L+
Sbjct: 178 SNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEK 237
Query: 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328
+ P++I+AED+E +AL+ L+ NK+RG K+ A+KAP FG+R+ L D+AILTGG
Sbjct: 238 VIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQ 297
Query: 329 VIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388
VI +E+GLTL+ A +LG A KVV+TKD T IV A+ R+++IR E ++
Sbjct: 298 VISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSD 357
Query: 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSL 448
+ + L ER+A+L+GG+A+++ GA T VELK+++ RIEDA+ KAA+EEGIV GGG +L
Sbjct: 358 YDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTL 417
Query: 449 LRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504
L+ + ++ +K ++ GA I K AL P K IA N+G+ V ++V
Sbjct: 418 LQAAPTLDELKL---EGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLP 470
|
| >3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 1e-72
Identities = 84/196 (42%), Positives = 127/196 (64%)
Query: 212 TENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVK 271
+ EGM+FDRG+LSPYF+ + +VE + +LLVDKKI N +++ +L+ K
Sbjct: 5 HHHHHHGSEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAK 64
Query: 272 EKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIR 331
P+VI+AED+E +ALA L+ N +RG++K A++KAP FG+R+ L DIA LT G VI
Sbjct: 65 ASKPLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVIS 124
Query: 332 DEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQK 391
+E+GL L+KA E LG A +VVI KD+T I+ A+ R+++IR E + + +
Sbjct: 125 EEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQIEESTSDYDR 184
Query: 392 NILNERIARLSGGIAI 407
L ER+A+L+GG+ +
Sbjct: 185 EKLQERVAKLAGGVKL 200
|
| >3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 1e-71
Identities = 80/193 (41%), Positives = 124/193 (64%)
Query: 216 LEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYP 275
LE EG+ FD+GFLS YFVTD + D +LL KI + D+ +L+ P
Sbjct: 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKP 61
Query: 276 IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMG 335
++IVAED+E +ALA L+ N +R LKA A+K P FG+R+ +L+D+A++TGG V+ + G
Sbjct: 62 LLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAG 121
Query: 336 LTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILN 395
+ L + G EVLG+A +VV++KD T+IV G T AV R +R+ + ++ + + L
Sbjct: 122 MVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKLG 181
Query: 396 ERIARLSGGIAIL 408
ER+A+L+GG+A++
Sbjct: 182 ERLAKLAGGVAVI 194
|
| >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 2e-56
Identities = 67/145 (46%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Query: 221 GMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVA 280
G +FD+G++SPYFVT+ + D +L+V+KK+ N +++ IL+ + P++I+A
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 281 EDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDK 340
ED+E +ALA L+ NKLRG L AA+KAP FG+R+ L DIA +TGG VI +E+G L+
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120
Query: 341 AGKEVLGTAIKVVITKDSTLIVTDG 365
A +LG A +V ITKD T IV G
Sbjct: 121 ATLSMLGRAERVRITKDETTIV-GG 144
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 7e-17
Identities = 101/494 (20%), Positives = 191/494 (38%), Gaps = 126/494 (25%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+A+ V TLGPKG + +L + G I NDG T+LKE+++E P + V++ ++
Sbjct: 34 IADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEV-----SKAQ 88
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH 171
D GDG TT+++L+ L+ + ++ G++P I+ G + + + D
Sbjct: 89 DTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDD 148
Query: 172 E-LADVAA-------VSAGNDYTVGKMISDALQQV-----GRNGV----VTIEK--GKCT 212
L +A ND+ + ++ A+ V G+ V + ++K G
Sbjct: 149 ATLRKIALTALSGKNTGLSNDF-LADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSV 207
Query: 213 ENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IKNP 259
++ + + G+ D+ + + V+ + K+ L+D KK I +P
Sbjct: 208 NDT-QFISGIVIDKEKVHS-----KMPDVVK--NAKIALIDSALEIKKTEIEAKVQISDP 259
Query: 260 KDMFKILD---SAVKEKYP--------IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAP 308
+ L+ + K+ +V+ + I+ A L + +
Sbjct: 260 SKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGI-----------Y 308
Query: 309 AFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTR 368
A K ++ +A TG ++ LD VLG A V
Sbjct: 309 AVRRVKKSDMEKLAKATGAKIV-----TDLDDLTPSVLGEAETV---------------- 347
Query: 369 AAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIA------ILQVGAQTVV-ELKDK 421
E++I + +R+ + G +++ G VV E++
Sbjct: 348 --EERKIGD------------------DRMTFVMGCKNPKAVSILIRGGTDHVVSEVE-- 385
Query: 422 QLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL- 478
R + DA+ E+G + GGG L+ ++ + EQ + E F +AL
Sbjct: 386 --RALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQ-LAIEAFAKALE 442
Query: 479 SYPTKLIAKNAGVN 492
P L A+NAG++
Sbjct: 443 IIPRTL-AENAGID 455
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 7e-17
Identities = 103/502 (20%), Positives = 181/502 (36%), Gaps = 139/502 (27%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
V E + TLGP G ++++ I NDG T+LK +++ P V + +R
Sbjct: 36 VQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDI-----SRAQ 90
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH 171
D GDG T+ ILA L+ E + G++ I +G K + ++ + ++
Sbjct: 91 DAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSE 150
Query: 172 ELAD------VAA-------VSAGNDYTVGKMISDALQQVGRNGV----VTIEK--GKCT 212
+ + A + D+ KM DA+ + RN + + I+K G
Sbjct: 151 KSSGRELLERCARTAMSSKLIHNNADF-FVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAM 209
Query: 213 ENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IKNP 259
E S + G+ F + F F ++Q + + K+L ++ K +++
Sbjct: 210 EES-LFINGVAFKKTFSYAGF--EQQPKKFN--NPKILSLNVELELKAEKDNAEVRVEHV 264
Query: 260 KDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA---IKAPAFGERKSH 316
+D I+ D E Q LI KLR V + A + G+ +
Sbjct: 265 EDYQAIV---------------DAEWQ----LIFEKLRQVEETGANIVLSKLPIGDLATQ 305
Query: 317 YLDD----------------IAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTL 360
+ D + GG + T E LGT
Sbjct: 306 FFADRNIFCAGRVSADDMNRVIQAVGGSIQS-----TTSDIKPEHLGTCALF-------- 352
Query: 361 IVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIA------ILQVGAQT 414
E +I ER G +L+ GA+
Sbjct: 353 ----------EEMQIGS------------------ERYNLFQGCPQAKTCTLLLRGGAEQ 384
Query: 415 VV-ELKDKQLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471
V+ E++ R + DA+ K A++ IV GGG + + +S + + + ++Q +
Sbjct: 385 VIAEVE----RSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQ-MII 439
Query: 472 EIFKRAL-SYPTKLIAKNAGVN 492
F +AL P +L +NAG +
Sbjct: 440 NAFAKALEVIPRQL-CENAGFD 460
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 2e-16
Identities = 96/507 (18%), Positives = 180/507 (35%), Gaps = 140/507 (27%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA +V +LGP G + +L + G + NDG T+L ++++ P I V+L A+
Sbjct: 36 VANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVEL-----AQQQ 90
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEK-TSKAL--LSELKLTSREV 168
D GDG T+ +I+A L+ +++ ++P I G +A+ ++E+ TS +
Sbjct: 91 DREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDT 150
Query: 169 EDHE-LADVAA-------VSAGNDYTVGKMISDALQQVGRNGV----------VTIEK-- 208
E L ++A + A +D+ M+ DAL V V + K
Sbjct: 151 LGKETLINIAKTSMSSKIIGADSDF-FSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAH 209
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK-------- 255
GK S +V G + S + + + K+ +D +
Sbjct: 210 GKSATES-LLVPGYALNCTVASQ-----AMPKRIAGGNVKIACLDLNLQKARMAMGVQIN 263
Query: 256 IKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA---IKAPAFGE 312
I +P+ + +I E ++ +++ ++ A A + +
Sbjct: 264 IDDPEQLEQIR---------------KREAG----IVLERVKKIIDAGAQVVLTTKGIDD 304
Query: 313 RKSHYLDD----------------IAILTGGLVIRDEMGLTLDKAGKE-VLGTAIKVVIT 355
+ IA TG ++ L ++ + LG +V
Sbjct: 305 LCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEV--- 361
Query: 356 KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIA------ILQ 409
V+ + S+ + + G IL+
Sbjct: 362 ---------------VQAKFSD------------------DECILIKGTSKHSSSSIILR 388
Query: 410 VGAQTVV-ELKDKQLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEE 466
+ E++ R + D+L+ K +E G +V GGGC L+ ++ + + E
Sbjct: 389 GANDYSLDEME----RSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSRE 444
Query: 467 QKIGAEIFKRAL-SYPTKLIAKNAGVN 492
Q + F AL P L A NA +
Sbjct: 445 Q-LAIAEFAAALLIIPKTL-AVNAAKD 469
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 6e-16
Identities = 95/485 (19%), Positives = 188/485 (38%), Gaps = 101/485 (20%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+ +++ LGPKG +L + G K+ DG +L E++++ P ++ K+ A
Sbjct: 22 LQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKV-----ATAQ 76
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK--LTSREVE 169
D GDG T+++++ L+ + I+ G++P I G E + L L+ S+E++
Sbjct: 77 DDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMD 136
Query: 170 DHELADVAA------VSAGNDYTVGKMISDALQQVGRNGV------VTIEK--GKCTENS 215
L DVA V A + + + D++ + + V I + K ++
Sbjct: 137 RETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDT 196
Query: 216 LEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IKNPKDM 262
++ G+ D G P K+ VE D +L + +K K+ ++
Sbjct: 197 -SLIRGLVLDHGARHP-----DMKKRVE--DAYILTCNVSLEYEKTEVNSGFFYKSAEER 248
Query: 263 FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAI-----------KAPAFG 311
K++ + + K+ V + IE + +K V+ I A
Sbjct: 249 EKLVKA--ERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALR 306
Query: 312 ERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTR 368
K ++ + + GG+ + +LD + L V + ++ + +
Sbjct: 307 RAKRRNMERLTLACGGIALN-----SLDDLNPDCLLGHAGVYEYTLGEEKFTFIEKCNNP 361
Query: 369 AAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428
+V +L + G T+ ++KD I D
Sbjct: 362 RSV--------------------TLL------IKGP------NKHTLTQIKDA---IRDG 386
Query: 429 LNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAK 487
L A K AI++G +V G G + ++ + K + Q +G + F AL K++A+
Sbjct: 387 LRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQ-LGVQAFADALLIIPKVLAQ 445
Query: 488 NAGVN 492
N+G +
Sbjct: 446 NSGFD 450
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 7e-16
Identities = 90/493 (18%), Positives = 183/493 (37%), Gaps = 120/493 (24%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+A+++ LGPK +L + G + NDG +L+EI+++ P +++ +RT
Sbjct: 21 IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEI-----SRTQ 75
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-- 169
D GDG T+ IILA +++ + M+P + K ++S LK S V+
Sbjct: 76 DEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTS 135
Query: 170 DHE-LADVAA-------VSAGNDYTVGKMISDALQQVGRNG----------VVTIEK--G 209
+ + + ++ +S + + DA++ V +EK G
Sbjct: 136 NRDTMLNIINSSITTKVISRWSSL-ACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPG 194
Query: 210 KCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------I 256
E+S ++ G+ ++ P R +R ++ + +++L+D KK I
Sbjct: 195 GIIEDS-CVLRGVMINKDVTHP-----RMRRYIK--NPRIVLLDSSLEYKKGESQTDIEI 246
Query: 257 KNPKDMFKILDS---AVKEKYP--------IVIVAEDIEQQALALLIRNKLRGVLKAAAI 305
+D +IL +++ +VI + I A L+R +
Sbjct: 247 TREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANI--------- 297
Query: 306 KAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV----ITKDSTLI 361
A + + IA G ++ ++ +E +GT ++ I +
Sbjct: 298 --TAIRRVRKTDNNRIARACGARIVS-----RPEELREEDVGTGAGLLEIKKIGDEYFTF 350
Query: 362 VTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDK 421
+T+ A IL L G + + E++
Sbjct: 351 ITECKDPKAC--------------------TIL------LRGA------SKEILSEVERN 378
Query: 422 QLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL-S 479
++DA+ + + + +V GGG S + ++ + + + EQ +AL
Sbjct: 379 ---LQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQ-WPYRAVAQALEV 434
Query: 480 YPTKLIAKNAGVN 492
P L +N G +
Sbjct: 435 IPRTL-IQNCGAS 446
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 95/524 (18%), Positives = 192/524 (36%), Gaps = 99/524 (18%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA+++ LGPK +L + G + NDG +L+EI++ P ++L +RT
Sbjct: 31 VADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLEL-----SRTQ 85
Query: 113 DL-AGDGCTTSIILAQGLIAEGV-KVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE- 169
D GDG TT IILA ++A+ +I ++PV I + ++K L +K S+ V+
Sbjct: 86 DEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDV 145
Query: 170 --DHELADVAA------VSAGNDYTVGKMISDALQQVGRNGV----------------VT 205
D + + + ++ DA++ V ++ V
Sbjct: 146 ENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVR 205
Query: 206 IEK--GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--- 255
+EK G +S +++G+ ++ + P + R +E + +++L+D KK
Sbjct: 206 VEKIPGGDVLDS-RVLKGVLLNKDVVHP-----KMSRHIE--NPRVVLLDCPLEYKKGES 257
Query: 256 -----IKNPKDMFKILDS---AVKEKYP--------IVIVAEDIEQQALALLIRNKLRGV 299
I+ +D +IL V+ +VI + + A L++
Sbjct: 258 QTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGC--- 314
Query: 300 LKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGK-------EVLGTAIKV 352
K + IA +TG ++ L G E++G
Sbjct: 315 --------SVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFS 366
Query: 353 VITK----DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAIL 408
+ S + KR + +A RF+K + +
Sbjct: 367 FLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHH 426
Query: 409 QVGAQTVVELKDKQLR---------IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGI 458
+ + + ++DA+ + + + GGG + + +S K+
Sbjct: 427 HGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEK 486
Query: 459 KELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSA 502
+ L+ +Q + A+ + + +NAG + ++ Q+ A
Sbjct: 487 AKQLEGIQQ-WPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRA 529
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 100/497 (20%), Positives = 180/497 (36%), Gaps = 125/497 (25%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA+ + +LGPKG + ++Q+ G I NDG T+LK++++ P + V+L ++
Sbjct: 23 VADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVEL-----SKAQ 77
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-- 169
D+ AGDG T+ +I+A L+ K++ G++P I+ +K + + L SR VE
Sbjct: 78 DIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELS 137
Query: 170 -DHELADVAA------VSAGNDYTVGKMISDALQQV----GRNGV----VTIEK--GKCT 212
L + AA V + + M DA+ +V V + I K G
Sbjct: 138 DRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTI 197
Query: 213 ENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV-- 270
++ E+VEG+ + + +++ K ++ +
Sbjct: 198 DDC-ELVEGLVLTQKVANSGI--------------------TRVEKAKIG--LIQFCLSA 234
Query: 271 -KEKYPIVIVAEDIEQQALAL-----LIRNKLRGVLKAAA--------IKAPAFGERKSH 316
K IV D Q L I N ++ + K I A + H
Sbjct: 235 PKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALH 294
Query: 317 YLDD----------------IAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTL 360
+L+ I G + +D+ ++LG+A
Sbjct: 295 FLNKMKIMVVKDIEREDIEFICKTIGTKPV-----AHVDQFTADMLGSAELA-------- 341
Query: 361 IVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGA--QTVVEL 418
E + + I A + I+ G+ + E
Sbjct: 342 ----------EEVSL--------NGSGKL---IKITGCASPGKTVTIVVRGSNKLVIEEA 380
Query: 419 KDKQLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKR 476
+ R I DAL + +++ ++ GGG + L+ ++ L E F
Sbjct: 381 E----RSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES-YCIRAFAD 435
Query: 477 AL-SYPTKLIAKNAGVN 492
A+ P+ L A+NAG+N
Sbjct: 436 AMEVIPSTL-AENAGLN 451
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 4e-15
Identities = 87/499 (17%), Positives = 181/499 (36%), Gaps = 127/499 (25%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA+ + +LGPKG + +++ G I NDG T+LK++ + P+ + V++ +
Sbjct: 31 VADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEV-----SAAQ 85
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-- 169
D AGDG T+ +IL L+ +++ G++P IA + +K + L +V
Sbjct: 86 DSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLS 145
Query: 170 -DHELADVAA-------VSAGNDYTVGKMISDALQQV---GRNGV----VTIEK--GKCT 212
+L A+ VS + + + + D++ ++ V + + K G
Sbjct: 146 DREQLVRAASTSLSSKIVSQYSSF-LAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTI 204
Query: 213 ENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IKNP 259
+++ E+++G+ + + E K+ L+ K + +
Sbjct: 205 DDT-EMIDGVVLTQTAIKS----AGGPTRKE--KAKIGLIQFQISPPKPDTENNIIVNDY 257
Query: 260 KDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA--------IKAPAFG 311
+ M KIL E+ + N + + KA I A
Sbjct: 258 RQMDKIL---------------KEERA----YLLNICKKIKKAKCNVLLIQKSILRDAVN 298
Query: 312 ERKSHYLDD----------------IAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT 355
+ H+L ++ G I ++ ++ L +A V
Sbjct: 299 DLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIA-----DIELFTEDRLDSADLV--- 350
Query: 356 KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTV 415
E + + +T R + +++ +
Sbjct: 351 ---------------EEIDSDGSK-IVRVTGIRNNNARPTVSV--------VIRGANNMI 386
Query: 416 VELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIF 474
++ ++ L DAL + ++E ++ GGG + +S ++ ++ + + F
Sbjct: 387 IDETERSL--HDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQA-FIWQEF 443
Query: 475 KRAL-SYPTKLIAKNAGVN 492
AL PT L A+NAG+N
Sbjct: 444 ASALEVIPTTL-AENAGLN 461
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 7e-15
Identities = 104/496 (20%), Positives = 203/496 (40%), Gaps = 128/496 (25%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
++ V +LGP+G + +L + G I NDG T+LKE+++E P + V++ ++T
Sbjct: 33 ISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEV-----SKTQ 87
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-- 169
D GDG TT++I+A GL+ + +I ++P I+ G S+ + S ++
Sbjct: 88 DSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGAD 147
Query: 170 -DHELADVAA-------VSAGNDYTVGKMISDALQQV-----GRNGV----VTIEK--GK 210
L +A S D + ++ +A++ V G+ V + + K G
Sbjct: 148 EKALLLKMAQTSLNSKSASVAKDK-LAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGG 206
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IK 257
+++ +++ G+ D+ + P V+ D K+ L+D KK I+
Sbjct: 207 AIDDT-QLINGIIVDKEKVHP-----GMPDVVK--DAKIALLDAPLEIKKPEFDTNLRIE 258
Query: 258 NPKDMFKILD---SAVKEKYP--------IVIVAEDIEQQALALLIRNKLRGVLKAAAIK 306
+P + K L + ++E +VI + I+ A L R +
Sbjct: 259 DPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGI---------- 308
Query: 307 APAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGS 366
A K +D +A TG ++ T+D+ LGTA +V
Sbjct: 309 -YAVRRVKKSDMDKLAKATGASIVS-----TIDEISSSDLGTAERV-------------- 348
Query: 367 TRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIA------ILQVGAQTVV-ELK 419
+ ++ E + + ++G +++ + VV E++
Sbjct: 349 ----EQVKVGE------------------DYMTFVTGCKNPKAVSILVRGETEHVVDEME 386
Query: 420 DKQLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRA 477
R I D+L+ +A+E+G GGG + ++ ++ + + +Q + E F A
Sbjct: 387 ----RSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQ-LAIEKFADA 441
Query: 478 L-SYPTKLIAKNAGVN 492
+ P L A+NAG++
Sbjct: 442 IEEIPRAL-AENAGLD 456
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 7e-15
Identities = 101/496 (20%), Positives = 199/496 (40%), Gaps = 128/496 (25%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
V E + T GP+G + +L + G I NDG T+L +++L+ P + V++ A+
Sbjct: 42 VEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQI-----AKGQ 96
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-- 169
D DG T++I + L+ + ++ ++P I G +K + L ++ ++ V
Sbjct: 97 DEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSIN 156
Query: 170 -DHELADVAA-------VSAGNDYTVGKMISDALQQV-----GRNGV----VTIEK--GK 210
L +A V+ +Y + ++ A+ QV + V + I K G
Sbjct: 157 DTDLLRKIAMTSLSSKAVAGAREY-IADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGG 215
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IK 257
++ ++V G+ D+ + P + +E + K+ L+D +K I
Sbjct: 216 SINDT-QLVYGIVVDKEVVHP-----GMPKRLE--NAKIALIDASLEVEKPELDAEIRIN 267
Query: 258 NPKDMFKILD---SAVKEKYP--------IVIVAEDIEQQALALLIRNKLRGVLKAAAIK 306
+P M K LD + +KEK ++I + I++ A + L + +
Sbjct: 268 DPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGV---------- 317
Query: 307 APAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGS 366
A K L+ +A TGG V+ +D+ ++ LG A +
Sbjct: 318 -LAVRRAKKSDLEKLARATGGRVVS-----NIDEISEQDLGYASLI-------------- 357
Query: 367 TRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIA------ILQVGAQTVV-ELK 419
E+++ E +++ + G +++ G + +V E +
Sbjct: 358 ----EERKVGE------------------DKMVFVEGAKNPKSISILIRGGLERLVDETE 395
Query: 420 DKQLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRA 477
R + DAL I++G + GGG + ++ K+ + +EQ + E + A
Sbjct: 396 ----RALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQ-LAVEAYANA 450
Query: 478 L-SYPTKLIAKNAGVN 492
L S + L +NAG +
Sbjct: 451 LESLVSIL-IENAGFD 465
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 1e-14
Identities = 109/491 (22%), Positives = 200/491 (40%), Gaps = 118/491 (24%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+AE V TLGPKG + +L + G + ND T+L +I+L+ P + V++ A+T
Sbjct: 35 IAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEV-----AKTQ 89
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-- 169
D AGDG TT++++A L+ + +++ ++P I +G ++ L + V+
Sbjct: 90 DKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPD 149
Query: 170 -DHELADVAA-------VSAGNDYTVGKMISDALQQV-----GRNGV----VTIEK--GK 210
+ L +AA + + + K+ +A++QV G+ V + EK G+
Sbjct: 150 DEETLLKIAATSITGKNAESHKEL-LAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGE 208
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IK 257
E S E+V G+ D+ + P R + VE + K+ L++ KK I
Sbjct: 209 GVEES-ELVRGVVIDKEVVHP-----RMPKRVE--NAKIALINEALEVKKTETDAKINIT 260
Query: 258 NPKDMFKILD---SAVKEKYP--------IVIVAEDIEQQALALLIRNKLRGVLKAAAIK 306
+P + L+ +K+ +V V + I+ A L + +
Sbjct: 261 SPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGI---------- 310
Query: 307 APAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITK---DSTLIVT 363
A K ++ +A TG ++ + E LG A V K ++ + V
Sbjct: 311 -MAVRRVKKSDMEKLAKATGAKIVT-----NVKDLTPEDLGYAEVVEERKLAGENMIFVE 364
Query: 364 DGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQL 423
AV IL + GG + E++
Sbjct: 365 GCKNPKAV--------------------TIL------IRGG------TEHVIDEVERA-- 390
Query: 424 RIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL-SYP 481
+EDA+ K +E+G ++ GG + L+ +++ + + +E + E F AL P
Sbjct: 391 -LEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEA-LAIENFADALKIIP 448
Query: 482 TKLIAKNAGVN 492
L A+NAG++
Sbjct: 449 KTL-AENAGLD 458
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 1e-14
Identities = 84/502 (16%), Positives = 182/502 (36%), Gaps = 120/502 (23%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+A+ GP G N ++ N + ND T+L+E+E++ P K++ A +
Sbjct: 23 LAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHP----AAKMIVMA-SHMQ 77
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK----LTSRE 167
+ GDG ++ A L+ +++ G++ ++ G E K L +++
Sbjct: 78 EQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKN 137
Query: 168 VEDHE-LADVAAVS-----AGNDYTVGKMISDALQQV--GRNGV----VTIEK--GKCTE 213
+ D + ++ + S GN+ + K+I+ A + + + K G
Sbjct: 138 LRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVH 197
Query: 214 NSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IKNPK 260
+S ++ GM F + +V+ D K+ + IK+ +
Sbjct: 198 SS-SVLHGMVFKKETEG-------DVTSVK--DAKIAVYSCPFDGMITETKGTVLIKSAE 247
Query: 261 DMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA---IKAPAFGERKSHY 317
++ E+ L+ +++ + A + + HY
Sbjct: 248 ELMNFS---------------KGEEN----LMDAQVKAIADTGANVVVTGGRVADMALHY 288
Query: 318 LDDIAILTGGLVIRDEMGL-----------TLDKAGKEVLGTAIKVVITKDSTLIVTDGS 366
+ I+ L + ++ L+ E +G V +++ G
Sbjct: 289 ANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSE-------VGD 341
Query: 367 TRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVV-ELKDKQLR- 424
T+ V K E +++ I +L+ ++ +++ R
Sbjct: 342 TQVVVFKHEKEDGAISTI----------------------VLRGSTDNLMDDIE----RA 375
Query: 425 IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL-SYPT 482
++D +N K + +V GGG + + L+ ++ E EQ + F A + P
Sbjct: 376 VDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQ-YAIKKFAEAFEAIPR 434
Query: 483 KLIAKNAGVNGNFVVDQV-SAH 503
L A+N+GV N V+ ++ + H
Sbjct: 435 AL-AENSGVKANEVISKLYAVH 455
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 104/497 (20%), Positives = 195/497 (39%), Gaps = 120/497 (24%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA ++ +LGP+G + +L + G I NDG T+L ++EL++ + + V+L +++
Sbjct: 57 VASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQL-----SKSQ 111
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-- 169
D GDG T ++LA L+ + +++I G++P++IA G ++ +K +S+L+ T ++
Sbjct: 112 DDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISAS 171
Query: 170 -----DHELADVAA-------VSAGNDYTVGKMISDALQQV---GRNGV----VTIEK-- 208
L A VS +D +M +A+ V R V + ++
Sbjct: 172 NDELFRDFLLRAAKTSLGSKIVSKDHDR-FAEMAVEAVINVMDKDRKDVDFDLIKMQGRV 230
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK-------- 255
G +S +++ G+ D+ F P KL ++ K
Sbjct: 231 GGSISDS-KLINGVILDKDFSHPQMPK-CVLPKEGSDGVKLAILTCPFEPPKPKTKHKLD 288
Query: 256 IKNPKDMFKILD---SAVKEKYP--------IVIVAEDIEQQALALLIRNKLRGVLKAAA 304
I + ++ K+ KE +VI + +A LL++N L
Sbjct: 289 ISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDL-------- 340
Query: 305 IKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTA-----IKVVITKDST 359
PA L+ IAI T G ++ K+ LGT + TKD
Sbjct: 341 ---PAVRWVGGQELEHIAISTNGRIVP-----RFQDLSKDKLGTCSRIYEQEFGTTKDRM 392
Query: 360 LIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVV-EL 418
LI+ V + ++ + +V E
Sbjct: 393 LIIEQSKETKTV--------TC-------------------------FVRGSNKMIVDEA 419
Query: 419 KDKQLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKR 476
+ R + D+L + +++ +V GGG + + +S V + +Q F +
Sbjct: 420 E----RALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQ-YAFRGFAQ 474
Query: 477 AL-SYPTKLIAKNAGVN 492
AL + P L A+N+G++
Sbjct: 475 ALDTIPMTL-AENSGLD 490
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 2e-14
Identities = 100/493 (20%), Positives = 197/493 (39%), Gaps = 125/493 (25%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+AE V TLGPKG + +L + G + NDG T+L+E+ +E P + +++ A+T
Sbjct: 31 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEV-----AKTQ 85
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-- 169
+ GDG TT++++A L+ + +++ ++P + +G + ++ LK + EV
Sbjct: 86 EKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQ 145
Query: 170 -DHELADVAA-------VSAGNDYTVGKMISDALQQVGRNGV------VTIEK--GKCTE 213
L +A + + ++I +A+ V + + IEK G +
Sbjct: 146 DKEILTKIAMTSITGKGAEKAKEK-LAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASID 204
Query: 214 NSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IKNPK 260
++ E+++G+ D+ +S + + V D K+ L++ K+ I +P
Sbjct: 205 DT-ELIKGVLVDKERVSA-----QMPKKVT--DAKIALLNCAIEIKETETDAEIRITDPA 256
Query: 261 DMFKILD---SAVKEKYP--------IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA 309
+ + ++ +K+ ++ + I+ A L + + A
Sbjct: 257 KLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI-----------VA 305
Query: 310 FGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRA 369
K ++ +A TG VI + + LG A V
Sbjct: 306 ARRVKKSDMEKLAKATGANVIA-----AIAALSAQDLGDAGLV----------------- 343
Query: 370 AVEKRISEIRSLAEITEERFQKNILNERIARLSGGIA------ILQVGAQTVV-ELKDKQ 422
E++IS + + + +++ + V+ E+
Sbjct: 344 -EERKISG------------------DSMIFVEECKHPKAVTMLIRGTTEHVIEEVA--- 381
Query: 423 LR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL-S 479
R ++DA+ IE+G IV GGG + + LS K+ E + EQ + F AL
Sbjct: 382 -RAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQ-LAVRAFADALEV 439
Query: 480 YPTKLIAKNAGVN 492
P L A+NAG++
Sbjct: 440 IPRTL-AENAGLD 451
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 4e-14
Identities = 91/507 (17%), Positives = 177/507 (34%), Gaps = 142/507 (28%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+A +V +LGP G + +L + G I NDG T+LK +E+E P + +L A
Sbjct: 22 IANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCEL-----ADLQ 76
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEK-TSKAL--LSELKLTSREV 168
D GDG T+ +I+A L+ +++ ++P + G +A+ +SE + + +
Sbjct: 77 DKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDE 136
Query: 169 EDHE-LADVAA-------VSAGNDYTVGKMISDALQQVGRNGV----------VTIEK-- 208
+ L + A + D+ ++ DA+ + + + + K
Sbjct: 137 LGRDCLINAAKTSMSSKVIGINGDF-FANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAH 195
Query: 209 GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK-------- 255
G+ S ++ G + + + + + K+ +D K
Sbjct: 196 GRSQMES-MLINGYALNC-----VVGSQGMPKRIV--NAKIACLDFSLQKTKMKLGVQVV 247
Query: 256 IKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA---IKAPAFGE 312
I +P+ + +I E + + +++ +L A + +
Sbjct: 248 ITDPEKLDQIR---------------QRESD----ITKERIQKILATGANVILTTGGIDD 288
Query: 313 RKSHYLDD----------------IAILTGGLVIRDEMGLTLDKAGKEV-LGTAIKVVIT 355
Y + IA +G V+ L ++ + LG A +V
Sbjct: 289 MCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEV--- 345
Query: 356 KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIA------ILQ 409
V++RI + + + + A IL+
Sbjct: 346 ---------------VQERICD------------------DELILIKNTKARTSASVILR 372
Query: 410 VGAQTVV-ELKDKQLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEE 466
+ E++ R + DAL K +E +V GGG LS +E + + E
Sbjct: 373 GANDFMCDEME----RSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSRE 428
Query: 467 QKIGAEIFKRAL-SYPTKLIAKNAGVN 492
Q + F R+L P L A NA +
Sbjct: 429 Q-LAIAEFARSLLVIPNTL-AVNAAQD 453
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 7e-14
Identities = 96/502 (19%), Positives = 180/502 (35%), Gaps = 139/502 (27%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+AE V TLGP+G + ++ + G I NDG T+LK +++ P V + A++
Sbjct: 23 IAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDI-----AKSQ 77
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH 171
D GDG T+ +LA + + + G++P I R ++ ++++K + V+
Sbjct: 78 DAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKE 137
Query: 172 -------ELADVAA-------VSAGNDYTVGKMISDALQQVGRNG---VVTIEK--GKCT 212
L A +S + KM+ DA+ + ++ I+K G
Sbjct: 138 DKVEQRKLLEKCAMTALSSKLISQQKAF-FAKMVVDAVMMLDDLLQLKMIGIKKVQGGAL 196
Query: 213 ENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IKNP 259
E S ++V G+ F + F F + Q + + + L++ K +
Sbjct: 197 EES-QLVAGVAFKKTFSYAGF--EMQPKKYH--NPMIALLNVELELKAEKDNAEIRVHTV 251
Query: 260 KDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA---IKAPAFGERKSH 316
+D I+ D E ++ +KL + + A + G+ +
Sbjct: 252 EDYQAIV---------------DAEWN----ILYDKLEKIHHSGAKVVLSKLPIGDVATQ 292
Query: 317 YLDD----------------IAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTL 360
Y D + GG + +++ +VLG
Sbjct: 293 YFADRDMFCAGRVPEEDLKRTMMACGGSIQT-----SVNALSSDVLGRCQVF-------- 339
Query: 361 IVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIA------ILQVGAQT 414
E +I ER +G IL+ GA+
Sbjct: 340 ----------EETQIGG------------------ERYNFFTGCPKAKTCTIILRGGAEQ 371
Query: 415 VV-ELKDKQLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471
+ E + R + DA+ + AI+ +V GGG + LS + + ++Q +
Sbjct: 372 FMEETE----RSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQ-LLI 426
Query: 472 EIFKRAL-SYPTKLIAKNAGVN 492
+ +AL P +L NAG +
Sbjct: 427 GAYAKALEIIPRQL-CDNAGFD 447
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 9e-14
Identities = 99/495 (20%), Positives = 184/495 (37%), Gaps = 127/495 (25%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIV--NDGETVLKEIELEDPLENIGVKLVRQAGAR 110
+ +LV TLGPKG + +L + ++ NDG T+LK I +++P + V + +R
Sbjct: 22 IGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDM-----SR 76
Query: 111 TNDL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE 169
D GDG T+ +LA L+ E +IA ++P I G + +KA L ++ +
Sbjct: 77 VQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHG 136
Query: 170 DHELAD------VAA-------VSAGNDYTVGKMISDALQQVGRNG---VVTIEK--GKC 211
E+ +A ++ D+ K+ +A+ ++ +G + + K G
Sbjct: 137 SDEVKFRQDLMNIAGTTLSSKLLTHHKDH-FTKLAVEAVLRLKGSGNLEAIHVIKKLGGS 195
Query: 212 TENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KKIKNPKDMFKIL 266
+S + EG D+ Q + +E + K+L+ + KIK ++
Sbjct: 196 LADS-YLDEGFLLDKKIGVN------QPKRIE--NAKILIANTGMDTDKIKIFGSRVRVD 246
Query: 267 DSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA---IKAPAFGERKSHYLDD--- 320
+A + E E++ ++ K+ +LK I
Sbjct: 247 STAKVAEI------EHAEKE----KMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGV 296
Query: 321 -------------IAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGST 367
+A++TGG + T D LG+ +
Sbjct: 297 MAIEHADFVGVERLALVTGGEIAS-----TFDHPELVKLGSCKLI--------------- 336
Query: 368 RAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIA------ILQVGAQTVV-ELKD 420
E I E +++ SG +L+ Q ++ E +
Sbjct: 337 ---EEVMIGE------------------DKLIHFSGVALGEACTIVLRGATQQILDEAE- 374
Query: 421 KQLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL 478
R + DAL +++ V GGGCS + ++ V + +E + E + +AL
Sbjct: 375 ---RSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEA-VAMESYAKAL 430
Query: 479 -SYPTKLIAKNAGVN 492
PT + A NAG +
Sbjct: 431 RMLPTII-ADNAGYD 444
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 1e-13
Identities = 51/253 (20%), Positives = 97/253 (38%), Gaps = 50/253 (19%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+ ++ ++GP GRN ++ N G I ND T+L+E+++ P VK++ A
Sbjct: 38 LHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHP----AVKVLVMA-TEQQ 92
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK----LTSRE 167
+ GDG +ILA L+ K+I+ G++ V+I +G K L EL +
Sbjct: 93 KIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITD 152
Query: 168 VEDHE-LADVAAVS-----AGNDYTVGKMISDALQQVGRNGV------------VTIEK- 208
D L + G++ + +++S+A+ V + + K
Sbjct: 153 KNDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKI 212
Query: 209 -GKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK------- 255
G NS +++GM F+R + + K+ +
Sbjct: 213 MGGSLSNS-TVIKGMVFNRE----PEGHVKSLSEDK--KHKVAVFTCPLDIANTETKGTV 265
Query: 256 -IKNPKDMFKILD 267
+ N ++M
Sbjct: 266 LLHNAQEMLDFSK 278
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 88/491 (17%), Positives = 168/491 (34%), Gaps = 105/491 (21%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
+ ++ LGPKG +L + G K+ DG+ +L E++++ P + + A
Sbjct: 29 LQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARA-----AAAQ 83
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEK-TSKAL--LSELKLT-SRE 167
D GDG TT + L L+ + + I G++P I G E +++ L E K++ +
Sbjct: 84 DEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNL 143
Query: 168 VEDHE-LADVAA------VSAGNDYTVGKMISDALQQVGRNG-------VVTIEK--GKC 211
D E L VA V A + +++DA+ V +V I +
Sbjct: 144 SNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLS 203
Query: 212 TENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IKN 258
+++ ++G+ D G P V+ + +L+++ +K +
Sbjct: 204 PKDT-TFIKGLVLDHGGRHP-----DMPTRVK--NAYVLILNVSLEYEKTEVNSGFFYSS 255
Query: 259 PKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL 318
K+ S + K+ + + I+ + + V+ I
Sbjct: 256 ADQRDKLAAS--ERKFVDAKLKKIIDLKNEVCGMDPDKGFVI----INQKGIDPMSLDVF 309
Query: 319 DDIAILTGGLVIRDEMGL-----------TLDKAGKEVLGTAIKVVITK---DSTLIVTD 364
IL R M +++ ++LG + V + VT+
Sbjct: 310 AKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTE 369
Query: 365 GSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLR 424
+ + IL + G + + KD
Sbjct: 370 NTDPKSC--------------------TIL------IKGS------THYALAQTKDA--- 394
Query: 425 IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEE--QKIGAEIFKRALSYP 481
+ D L A +++ I+ G G + LS + + K G E F AL
Sbjct: 395 VRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVI 454
Query: 482 TKLIAKNAGVN 492
K + KN+G +
Sbjct: 455 PKTLVKNSGFD 465
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 3e-13
Identities = 103/495 (20%), Positives = 196/495 (39%), Gaps = 124/495 (25%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112
VA + +LGP G + ++ +K G + NDG T+L ++++ + + V+L +++
Sbjct: 22 VANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVEL-----SKSQ 76
Query: 113 DL-AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREV--- 168
D GDG T ++LA L+ E +++ G++P++IA G E+ ++ + L S V
Sbjct: 77 DDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVD 136
Query: 169 -EDHE-LADVAA-------VSAGNDYTVGKMISDALQQV---GRNGV----VTIEK--GK 210
++ E L A V++ + + ++ +A+ V R V + +E G
Sbjct: 137 MKNTEPLIQTAKTTLGSKVVNSCHRQ-MAEIAVNAVLTVADMQRRDVDFELIKVEGKVGG 195
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD-----KK--------IK 257
E++ ++++G+ D+ F P + + VE D K+ ++ K +
Sbjct: 196 RLEDT-KLIKGVIVDKDFSHP-----QMPKQVE--DAKIAILTCPFEPPKPKTKHKLDVT 247
Query: 258 NPKDMFKILD---SAVKEKYP--------IVIVAEDIEQQALALLIRNKLRGVLKAAAIK 306
+ +D + +E + + + +A LL++N L
Sbjct: 248 SVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDL---------- 297
Query: 307 APAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTA-----IKVVITKDSTLI 361
PA ++ IAI TGG ++ + E LG A I TKD L+
Sbjct: 298 -PAVRWVGGPEIELIAIATGGRIV-----PRFSELTAEKLGFAGLVKEISFGTTKDKMLV 351
Query: 362 VTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVV-ELKD 420
+ AV ++ ++ G + ++ E K
Sbjct: 352 IEQCKNSRAV--------TI-------------------------FIRGGNKMIIEEAK- 377
Query: 421 KQLR-IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL 478
R + DAL + I + +V GGG + + + V + EQ F AL
Sbjct: 378 ---RSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQ-YAMRAFADAL 433
Query: 479 -SYPTKLIAKNAGVN 492
P L A+N+G+N
Sbjct: 434 EVIPMAL-AENSGMN 447
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 108/491 (21%), Positives = 190/491 (38%), Gaps = 119/491 (24%)
Query: 53 VAELVGVTLGPKGRNVVLQNKYGPPKIV-NDGETVLKEIELEDPLENIGVKLVRQAGART 111
V +LV TLGPKG + +LQ+ +V NDG T+LK I L++P + V + ++
Sbjct: 29 VGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNI-----SKV 83
Query: 112 NDL-AGDGCTTSIILAQGLIAEGVKVIAAG-MNPVQIARGIEKTSKALLSELKLTSREVE 169
D GDG T+ +L+ L+ E K+I ++P I G S A L L + +
Sbjct: 84 QDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNS 143
Query: 170 DHE------LADVAA-------VSAGNDYTVGKMISDALQQVGRNG---VVTIEK--GKC 211
+ L +A +S D+ ++ ++A+ ++ + + I K G
Sbjct: 144 HDKTMFREDLIHIAKTTLSSKILSQDKDH-FAELATNAILRLKGSTNLEHIQIIKILGGK 202
Query: 212 TENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVK 271
+S + EG + F + Q + +E + K+L+ + + K KI + K
Sbjct: 203 LSDS-FLDEGFILAKKFGNN------QPKRIE--NAKILIANTTLDTDKV--KIFGTKFK 251
Query: 272 -EKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA---IKAPAFGERKSHYLDD------- 320
+ + E E++ ++NK+ + K I + D
Sbjct: 252 VDSTAKLAQLEKAERE----KMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIE 307
Query: 321 ---------IAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAV 371
+A++TGG V+ T D+ K LG +
Sbjct: 308 HADFEGVERLALVTGGEVVS-----TFDEPSKCKLGECDVI------------------E 344
Query: 372 EKRISEIRSLAEITEERFQKNILNERIARLSGGIA------ILQVGAQTVV-ELKDKQLR 424
E + E + + SG A +L+ + E + R
Sbjct: 345 EIMLGE------------------QPFLKFSGCKAGEACTIVLRGATDQTLDEAE----R 382
Query: 425 -IEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL-SYP 481
+ DAL+ +E V+GGGC+ + +S V+ + +D ++ + E F RAL P
Sbjct: 383 SLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKS-LAVEAFARALRQLP 441
Query: 482 TKLIAKNAGVN 492
T L A NAG +
Sbjct: 442 TIL-ADNAGFD 451
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 99/471 (21%), Positives = 179/471 (38%), Gaps = 129/471 (27%)
Query: 79 IVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL-AGDGCTTSIILAQGLIAEGVKVI 137
I NDG T+LKE++++ P + V++ ++T D GDG TT+ +L+ L+++ ++I
Sbjct: 11 ITNDGATILKEMDIQHPAAKMIVEV-----SKTQDAEVGDGTTTAAVLSGELLSKAEELI 65
Query: 138 AAGMNPVQIARGIEKTSKALLSELKLTSREVE---DHELADVAA-------VSAGNDYTV 187
G++ I+ G ++ L+ + + + L +A A + +
Sbjct: 66 MKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAYKEK-L 124
Query: 188 GKMISDALQQVGRNGV----------VTIEK--GKCTENSLEIVEGMRFDRGFLSPYFVT 235
+ A++ + + IEK G ++S E+++G+ D+ P
Sbjct: 125 SALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDS-ELIDGLVIDKERSHP---- 179
Query: 236 DRQKRTVEFHDGKLLLVD-----KK--------IKNPKDMFKILD---SAVKEKYP---- 275
VE + K+LL+ +K I +P M LD ++E
Sbjct: 180 -NMPEKVE--NAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIA 236
Query: 276 ----IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIR 331
+V + I+ A + + + A K L ++ +TG +I+
Sbjct: 237 SGANVVFCQKGIDDMAQYYIEKAGI-----------YAVRRVKKSDLKRLSKVTGATIIQ 285
Query: 332 DEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQK 391
LD+ E +GTA V EK +
Sbjct: 286 -----DLDQITTEDVGTAGLV------------------EEKEVRG-------------- 308
Query: 392 NILNERIARLSGGIA------ILQVGAQTVV-ELKDKQLR-IEDALNATKAAIEEG-IVV 442
++ ++G +L G + VV L + DAL+ IE+G +VV
Sbjct: 309 ----GKMTYVTGCQNSKAVTVLLHGGTEHVVDSLD----HALNDALHVVGVVIEDGKVVV 360
Query: 443 GGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL-SYPTKLIAKNAGVN 492
GGG S + LS ++ L EQ + F AL P L A+NAG++
Sbjct: 361 GGGSSEVELSLRLSEYASTLKGREQ-LAVSKFAEALEVIPVAL-AENAGLD 409
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 509 | |||
| 1kp8_A | 547 | Groel protein; chaperonin, assisted protein foldin | 100.0 | |
| 1we3_A | 543 | CPN60(groel); chaperonin, chaperone, groel, HSP60, | 100.0 | |
| 3rtk_A | 546 | 60 kDa chaperonin 2; heat shock protein, chaperone | 100.0 | |
| 1iok_A | 545 | Chaperonin 60; chaperone; 3.20A {Paracoccus denitr | 100.0 | |
| 3p9d_C | 590 | T-complex protein 1 subunit gamma; HSP60, eukaryot | 100.0 | |
| 3ko1_A | 553 | Chaperonin; 9-fold symmetry, double ring, ATP hydr | 100.0 | |
| 1q3q_A | 548 | Thermosome alpha subunit; chaperone, chaperonin; H | 100.0 | |
| 3ruv_A | 543 | Chaperonin, CPN; double-ring, protein folding mach | 100.0 | |
| 1a6d_B | 543 | Thermosome (beta subunit); group II chaperonin, CC | 100.0 | |
| 1a6d_A | 545 | Thermosome (alpha subunit); group II chaperonin, C | 100.0 | |
| 3iyg_H | 515 | T-complex protein 1 subunit ETA; TRIC/CCT, asymmet | 100.0 | |
| 3p9d_G | 550 | T-complex protein 1 subunit ETA; HSP60, eukaryotic | 100.0 | |
| 3p9d_A | 559 | T-complex protein 1 subunit alpha; HSP60, eukaryot | 100.0 | |
| 3iyg_B | 513 | T-complex protein 1 subunit beta; TRIC/CCT, asymme | 100.0 | |
| 3p9d_D | 528 | T-complex protein 1 subunit delta; HSP60, eukaryot | 100.0 | |
| 3iyg_A | 529 | T-complex protein 1 subunit alpha; TRIC/CCT, asymm | 100.0 | |
| 3iyg_E | 515 | T-complex protein 1 subunit; TRIC/CCT, asymmetric, | 100.0 | |
| 3p9d_E | 562 | T-complex protein 1 subunit epsilon; HSP60, eukary | 100.0 | |
| 3iyg_G | 515 | T-complex protein 1 subunit gamma; TRIC/CCT, asymm | 100.0 | |
| 3iyg_D | 518 | T-complex protein 1 subunit delta; TRIC/CCT, asymm | 100.0 | |
| 3p9d_B | 527 | T-complex protein 1 subunit beta; HSP60, eukaryoti | 100.0 | |
| 3iyg_Q | 512 | T-complex protein 1 subunit theta; TRIC/CCT, asymm | 100.0 | |
| 3p9d_H | 568 | T-complex protein 1 subunit theta; HSP60, eukaryot | 100.0 | |
| 3iyg_Z | 517 | T-complex protein 1 subunit zeta; TRIC/CCT, asymme | 100.0 | |
| 3p9d_F | 546 | T-complex protein 1 subunit zeta; HSP60, eukaryoti | 100.0 | |
| 3aq1_B | 500 | Thermosome subunit; group II chaperonin, protein f | 100.0 | |
| 3m6c_A | 194 | 60 kDa chaperonin 1; chaperone, ATP-binding, nucle | 100.0 | |
| 3osx_A | 201 | 60 kDa chaperonin; alpha, beta, apical domain, cha | 100.0 | |
| 1srv_A | 145 | Protein (groel (HSP60 class)); chaperone, cell div | 100.0 | |
| 1gml_A | 178 | T-complex protein 1 subunit gamma; chaperone, chap | 99.89 | |
| 1ass_A | 159 | Thermosome; chaperonin, HSP60, TCP1, groel, thermo | 99.8 |
| >1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-109 Score=894.06 Aligned_cols=470 Identities=44% Similarity=0.766 Sum_probs=458.4
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
++|.|.|| +++|++|+.||..|+++|++||||+||||||++++|+|+|||||+||+|+|+++||+|||||+|++++|+
T Consensus 1 ~~k~~~~g--~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~ 78 (547)
T 1kp8_A 1 AAKDVKFG--NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVAS 78 (547)
T ss_dssp CCEEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred CCcccccc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHH
Confidence 36899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|+++. .|.++|++|+++++.|+
T Consensus 79 ~qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~ 158 (547)
T 1kp8_A 79 KANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVG 158 (547)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHH
T ss_pred hhccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
++++||+.+++++|.|++++|++++|++++++|++|+++|.||||.+++++|+++++||+|+++|++|++++++.+++++
T Consensus 159 ~liadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~ 238 (547)
T 1kp8_A 159 KLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEA 238 (547)
T ss_dssp HHHHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++|+++|+.|+++|.++|+|||+|+||++++.+|+|||++|||+++++++|++++++++++||+
T Consensus 239 i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~ 318 (547)
T 1kp8_A 239 VAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQ 318 (547)
T ss_dssp HHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEE
T ss_pred HHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.|++++++|++|+||++++.+++|+++++.+++.++++|+||+|+||+++|+|++|||+|||+|+.+++|++|+++||
T Consensus 319 a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DA 398 (547)
T 1kp8_A 319 AKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDA 398 (547)
T ss_dssp EEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred eeEEEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
||++|+++++|+|||||++|++++.+|++++. .++.+| +++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 399 l~~~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~g~~q-~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~ 471 (547)
T 1kp8_A 399 LHATRAAVEEGVVAGGGVALIRVASKLADLRG-QNADQN-VGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG 471 (547)
T ss_dssp HHHHHHHHHHCEEETTTHHHHHHHHHTTTCCC-SSHHHH-HHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred HHHHHHhccCCEEeCCcHHHHHHHHHHHHHhc-cCchHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 99999999999999999999999999998875 555555 69999999999999999999999999999999875
|
| >1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-108 Score=888.60 Aligned_cols=470 Identities=47% Similarity=0.779 Sum_probs=458.4
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|.|.|| +++|++|+.||..|+++|++||||+||||||++++|+|+|||||+||+|+|+++||+|||||+|++++|+
T Consensus 1 ~~k~~~~g--~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~ 78 (543)
T 1we3_A 1 MAKILVFD--EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVAS 78 (543)
T ss_dssp -CEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred CCcccccc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHH
Confidence 57999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+|+||++||+++.+++++|+||+.|++||++|++.++++|+++++++++. .|.++|++|++ ++.|+
T Consensus 79 ~qd~e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~l~~vA~iS~~-~~~i~ 157 (543)
T 1we3_A 79 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISAN-DPEVG 157 (543)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHH
T ss_pred hhheecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHhhhhhcC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999998 89999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
++++||+.+++++|.|++++|++++|++++++|++|+++|.||||.+++++|+++++||+|+++|++|++++++.+++++
T Consensus 158 ~li~dAv~~V~~~g~I~Ve~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~Is~~~~l~~~le~ 237 (543)
T 1we3_A 158 KLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQ 237 (543)
T ss_dssp HHHHHHHHTTCTTSEEEEEECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEecCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++.+|+|||++|||+++++++|++++++++++||+
T Consensus 238 i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~ 317 (543)
T 1we3_A 238 VAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGR 317 (543)
T ss_dssp HHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEE
T ss_pred HHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.|++++++|++|+||++++.+.+|+++++.+++.++++|++++|+||+++|+|++|||+|||+|+.+++|++|+++||
T Consensus 318 a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DA 397 (543)
T 1we3_A 318 AERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDA 397 (543)
T ss_dssp EEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
||++|+++++|+|||||++|++++.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 398 l~~~r~av~~giVpGGGa~e~~~s~~L~~~~~~~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~ 471 (543)
T 1we3_A 398 LNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEA-TGAKIVRRALEEPARQIAENAGYEGSVIVQQILAE 471 (543)
T ss_dssp HHHHHHHHHHCEEETTTHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHhccCcCCCccHHHHHHHHHHHHHhhccCchHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999876666666 59999999999999999999999999999999974
|
| >3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-110 Score=897.65 Aligned_cols=468 Identities=45% Similarity=0.761 Sum_probs=388.4
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|.|.|| ++||+.|+.|++.|+++|++||||+||||||+++.|+|+|||||+||+|+|+++||++||||+|++++|+
T Consensus 1 ~~k~~~~~--~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~ 78 (546)
T 3rtk_A 1 MAKTIAYD--EEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAK 78 (546)
T ss_dssp --------------------------------------------------------------CCCHHHHHHHHHHHHHHT
T ss_pred CCceeecc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHH
Confidence 68999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|+++. .|.++|++|++ ++.++
T Consensus 79 ~qd~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~~~e~L~~vA~iS~~-~~~i~ 157 (546)
T 3rtk_A 79 KTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAG-DQSIG 157 (546)
T ss_dssp SCC-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHH
T ss_pred hhhhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHhHeEEeCC-chHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877 89999999998 88999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
++++||+.+++.+|.|+++.+....+.+++++|++|+++|.||||.+++++|+++++||+|+++|++|++++++.+++++
T Consensus 158 ~liadAv~~V~~dgvI~Ve~~~~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs~~~~l~~~le~ 237 (546)
T 3rtk_A 158 DLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEK 237 (546)
T ss_dssp HHHHHHHHHSCTTSEEEEECCSSSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEECCSTTTHHHHHH
T ss_pred HHHHHHHHHhccCCceEEEecCCcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCccCCHHHHHHHHHH
Confidence 99999999999999999887766654459999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+|||||+++|+++++++|+.|+++|+++|+|||+|+||+.++.+|+|||++|||+++++++|++++++++++||+
T Consensus 238 I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~ 317 (546)
T 3rtk_A 238 VIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGK 317 (546)
T ss_dssp HHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEE
T ss_pred HHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.|++++++|++|+||++++.++.|+++|++++++++++|++++|+||+++|+|++|||+|||+|+.+++|++|+++||
T Consensus 318 a~~v~i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DA 397 (546)
T 3rtk_A 318 ARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDA 397 (546)
T ss_dssp EEEEEECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHH
T ss_pred eEEEEEcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
||++|+++++|+|||||++|++++.+|++++ .++.+| +++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 398 l~a~r~av~~giVpGGGa~e~~~s~~L~~~~--~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~ 469 (546)
T 3rtk_A 398 VRNAKAAVEEGIVAGGGVTLLQAAPTLDELK--LEGDEA-TGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNL 469 (546)
T ss_dssp HHHHHHHHHHCEEETTTHHHHTTGGGSTTSC--CCTTHH-HHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS
T ss_pred HHHHHHHHhCCcccCCcHHHHHHHHHHHHhc--cccHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999887 566666 59999999999999999999999999999999885
|
| >1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-110 Score=897.88 Aligned_cols=471 Identities=46% Similarity=0.781 Sum_probs=417.3
Q ss_pred cchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 30 ~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
|+|.|.|| +++|++|+.||..|+++|++||||+||||||++++|+|+|||||+||+|+|+++||+|||||+|++++|+
T Consensus 2 ~~k~~~~g--~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~ 79 (545)
T 1iok_A 2 AAKEVKFN--SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVAS 79 (545)
T ss_dssp CCEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred Cchhhhcc--HHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHH
Confidence 68999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH-HHHHHhhhhcCCchhhh
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~l~~va~ts~~~~~~l~ 188 (509)
+||+++||||||+||||++||+++.+++.+|+||+.|++||++|++.++++|+++++|+++. .|.++|++|+++++.|+
T Consensus 80 ~qd~e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~va~iS~~~~~~i~ 159 (545)
T 1iok_A 80 RTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIG 159 (545)
T ss_dssp HGGGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCCSTTTTTHHHHHTTTTCHHHH
T ss_pred hhccccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHhhcCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 89999999999999999
Q ss_pred hHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHH
Q 010494 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (509)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~ 268 (509)
++++||+.+++++|.|++++|++++|++++++|++|+++|.||||.+++++|+++++||+|+++|++|++++++.+++++
T Consensus 160 ~li~dAv~~V~~~g~I~Ve~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~~~~~l~~~le~ 239 (545)
T 1iok_A 160 QQIAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLES 239 (545)
T ss_dssp HHHHHHHHHHCTTSCCCCEECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC-------
T ss_pred HHHHHHHHHhccCCeEEEEeCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc
Q 010494 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (509)
Q Consensus 269 i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (509)
+.+.|+||||++++|+++|+++|+.|+++|.++|+|||+|+||++++.+|+|||++|||+++++++|++++++++++||+
T Consensus 240 i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~ 319 (545)
T 1iok_A 240 VIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGR 319 (545)
T ss_dssp ----CCCCEEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEE
T ss_pred HHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred ceEEEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 010494 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (509)
Q Consensus 349 ~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dA 428 (509)
|+.|++++++|++|+||++++.+++|+++++++++.++++|+|++|+||+++|+|++|||+|||+|+.+++|++|+++||
T Consensus 320 a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DA 399 (545)
T 1iok_A 320 AKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDA 399 (545)
T ss_dssp EEEEEECSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred CcEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 429 l~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
||++|+++++|+|||||++|++++.+|++++. .++.+| +++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 400 l~~~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~ 473 (545)
T 1iok_A 400 LNATRAAVQEGIVVGGGVALVQGAKVLEGLSG-ANSDQD-AGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESS 473 (545)
T ss_dssp HHHHHHHHHHCEEETTTHHHHHHGGGGGSCCC-SSHHHH-HHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCC
T ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHHHhc-cCchHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999998875 555555 699999999999999999999999999999999764
|
| >3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-93 Score=773.46 Aligned_cols=447 Identities=19% Similarity=0.297 Sum_probs=379.0
Q ss_pred CCcceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccch
Q 010494 4 LSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDG 83 (509)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG 83 (509)
|..|+++++++.++.+ | .+||..|+.||..|+++|++||||+||||||+++.|+|+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~-----------------g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG 61 (590)
T 3p9d_C 1 MQAPVVFMNASQERTT-----------------G--RQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDG 61 (590)
T ss_dssp -----CCSCTTCCBCT-----------------T--HHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCH
T ss_pred CCCCeEeecCCcchhh-----------------H--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCH
Confidence 6789999999988877 6 89999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHH
Q 010494 84 ETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKV-IAAGMNPVQIARGIEKTSKALLSELK 162 (509)
Q Consensus 84 ~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~l-i~~Gi~p~~I~~G~~~a~~~~l~~L~ 162 (509)
+||+|+|+++||+ |+|++++|++||+++||||||+||||++||+++.++ +.+|+||+.|++||++|++.++++|+
T Consensus 62 ~TIlk~i~~~hP~----Akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~ 137 (590)
T 3p9d_C 62 HAILREIDVAHPA----AKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIK 137 (590)
T ss_dssp HHHHHHSCCCCHH----HHTHHHHTTTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHH----HHHHHHHHHhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hcCcccCc--H-HHHHHhhhhcCC------chhhhhHHHHHHHhhccCCc------------------EEEecCCCcccc
Q 010494 163 LTSREVED--H-ELADVAAVSAGN------DYTVGKMISDALQQVGRNGV------------------VTIEKGKCTENS 215 (509)
Q Consensus 163 ~~s~~v~~--~-~l~~va~ts~~~------~~~l~~li~~Ai~~v~~~g~------------------I~v~~g~~~~ds 215 (509)
+++++++. . .|.++|+||+++ ++.|+++++||+.++++++. |...+|+++.|+
T Consensus 138 ~~s~~v~~~~~e~L~~vA~tslsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds 217 (590)
T 3p9d_C 138 QVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDS 217 (590)
T ss_dssp HHCCTTTTCCTHHHHHHHTTTSTTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGC
T ss_pred HHhhccccCCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccc
Confidence 99999874 3 899999998754 68999999999999987642 233579999998
Q ss_pred eEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc-------------CCCHHHHHHHH-----------HHHHh
Q 010494 216 LEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKDMFKIL-----------DSAVK 271 (509)
Q Consensus 216 ~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~l~~~l-----------e~i~~ 271 (509)
++++|++|++++.+| +|+++++||||+++|++ |++++++.+++ +++.+
T Consensus 218 -~lv~Gmvfdk~~~~~-------~m~~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~ 289 (590)
T 3p9d_C 218 -RVLKGVLLNKDVVHP-------KMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILA 289 (590)
T ss_dssp -BCCSSEEECCCCSCT-------TSCSCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -eeeeEEEEecccCCC-------CCcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998876 47889999999999984 45667766655 67888
Q ss_pred cCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCc-ce
Q 010494 272 EKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT-AI 350 (509)
Q Consensus 272 ~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~-~~ 350 (509)
.|++|||++++|+++++++|..++ |+| |+++++.+|+|||++|||++++ +++++++++||+ |+
T Consensus 290 ~g~~vII~e~~I~d~Al~~L~k~~------I~a-----v~~~~k~~le~ia~~TGa~iis-----~l~~~~~~~LG~~a~ 353 (590)
T 3p9d_C 290 VRPTLVITEKGVSDLAQHYLLKGG------CSV-----LRRVKKSDNNRIARVTGATIVN-----RVEDLKESDVGTNCG 353 (590)
T ss_dssp TCCSEECCSSCCCTHHHHHHHHTT------CCC-----CCCCCHHHHHHHHHHHTCCCCS-----CSTTCCTTSCBCCCS
T ss_pred cCCcEEEecCCcCHHHHHHHHhcc------cee-----eccCCHHHHHHHHHHhCCceee-----cccCCCHHHhCCcCC
Confidence 999999999999999999998874 555 4588999999999999999999 689999999999 99
Q ss_pred EEE---EecCeEEEEecCCChhH--------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Q 010494 351 KVV---ITKDSTLIVTDGSTRAA--------------------------VEKRISEIRSLAEITEERFQKNILNERIARL 401 (509)
Q Consensus 351 ~i~---v~~~~~~~~~g~~~~~~--------------------------i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l 401 (509)
.|+ +++++|++|+||++++. |++|+++++.+++.++++|+++ +++|
T Consensus 354 ~v~~~~ig~d~~~~i~g~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~~~~~~~~~~~~~-----~~~l 428 (590)
T 3p9d_C 354 LFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHH-----HHHG 428 (590)
T ss_dssp EEECCEETTEECEEECC--------------------------------------------------------------C
T ss_pred EEEEEEEcCcEEEEEeCCCCccccccccccccccccchhhhhcchhhHHHHHHHHHHHHHHhccCCHHHHH-----HHhh
Confidence 997 47899999999999988 9999999999999999999966 4789
Q ss_pred cCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHH
Q 010494 402 SGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSY 480 (509)
Q Consensus 402 ~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~ 480 (509)
+|++|||+|||+|+.+++|++|+++||||++|+++++| +|||||++|++++.+|++++...++.+|+ |+++|++||+.
T Consensus 429 ~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~-~i~~~a~ALe~ 507 (590)
T 3p9d_C 429 SGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQW-PYQAVADAMEC 507 (590)
T ss_dssp CCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCSTTHH-HHHHHHHHTTH
T ss_pred cCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCChHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 99999999999999999988778887775 89999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHhcc
Q 010494 481 PTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 481 ~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
||++||+|||+|+.+++.+|++.
T Consensus 508 ip~~La~NaG~d~~~vv~~l~~~ 530 (590)
T 3p9d_C 508 IPRTLIQNAGGDPIRLLSQLRAK 530 (590)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999874
|
| >3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-89 Score=741.99 Aligned_cols=417 Identities=21% Similarity=0.362 Sum_probs=374.0
Q ss_pred CcceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchh
Q 010494 5 STPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGE 84 (509)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~ 84 (509)
.+|+++++++.++.+ | .+||..|+.||+.|+++|++||||+||||||+++.|+|+|||||+
T Consensus 13 ~~~~~~l~~~~~~~~-----------------g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~ 73 (553)
T 3ko1_A 13 GIPVIILKEGSSRTY-----------------G--KEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGA 73 (553)
T ss_dssp --------------------------------C--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHH
T ss_pred CCeEEEEecCcccch-----------------h--HHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCcc
Confidence 469999999877766 7 789999999999999999999999999999999999999999999
Q ss_pred hhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhc
Q 010494 85 TVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLT 164 (509)
Q Consensus 85 tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~ 164 (509)
||||+|+++||+ |+|++++|++||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++
T Consensus 74 tIlk~i~v~hP~----Akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~ 149 (553)
T 3ko1_A 74 TILDKMDLQHPA----AKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQEL 149 (553)
T ss_dssp HHHHSSCCCSHH----HHHHHHHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhhccChh----HHHHHHHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHh
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccC--cH-HHHHHhhhhcCC------chhhhhHHHHHHHhhccC--Cc-------EEEe--cCCCcccceEEeeceEE
Q 010494 165 SREVE--DH-ELADVAAVSAGN------DYTVGKMISDALQQVGRN--GV-------VTIE--KGKCTENSLEIVEGMRF 224 (509)
Q Consensus 165 s~~v~--~~-~l~~va~ts~~~------~~~l~~li~~Ai~~v~~~--g~-------I~v~--~g~~~~ds~~li~Gi~~ 224 (509)
+++++ +. .|.++|+||+++ ++.|+++++||+.+++++ |. |+++ +|+++.|+ ++++|++|
T Consensus 150 s~~v~~~d~e~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds-~lv~G~v~ 228 (553)
T 3ko1_A 150 AQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDT-QLVYGIVV 228 (553)
T ss_dssp CEECCTTCHHHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGC-EEESEEEE
T ss_pred cCCCCCCcHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccc-eeeEEEEe
Confidence 99987 55 899999999986 689999999999999985 65 6654 78898888 99999999
Q ss_pred eccCCCCccccCcCCceeEeeceeeEeecc-------------cCCCHHH-----------HHHHHHHHHhcCCCeEEEe
Q 010494 225 DRGFLSPYFVTDRQKRTVEFHDGKLLLVDK-------------KIKNPKD-----------MFKILDSAVKEKYPIVIVA 280 (509)
Q Consensus 225 ~~~~~~p~~~~~~~~~~~~~~~~kIll~d~-------------~i~~~~~-----------l~~~le~i~~~~~~lvi~~ 280 (509)
+++|.|||| +++++||||+++|+ .|+++++ +.++++++.+.|+||||++
T Consensus 229 dk~~~~~~m-------~~~ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~ 301 (553)
T 3ko1_A 229 DKEVVHPGM-------PKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQ 301 (553)
T ss_dssp CSCBSCTTS-------CSCCBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECS
T ss_pred cccccCCCC-------ccccccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEec
Confidence 999999974 66899999999998 4677777 4556789999999999999
Q ss_pred ccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cC
Q 010494 281 EDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KD 357 (509)
Q Consensus 281 ~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~ 357 (509)
++|+++++++|..+ +|++|+ ++++.+|+|||++|||++++ +++++++++||+|+.|++. ++
T Consensus 302 ~~I~~~al~~L~~~------gI~~v~-----~v~k~~leria~~tGa~ivs-----~l~~l~~~~LG~a~~v~~~~ig~d 365 (553)
T 3ko1_A 302 KGIDEVAQSYLAKK------GVLAVR-----RAKKSDLEKLARATGGRVVS-----NIDEISEQDLGYASLIEERKVGED 365 (553)
T ss_dssp SCBCSHHHHHHHHH------TCEEEC-----CCCHHHHHHHHTTTTCCEES-----CGGGCCSSSSEECSEEECCCCSSS
T ss_pred cChHHHHHHHHHhc------chhhhh-----hhhhhhHHHHHHhhCCeeec-----ccccCChhhcchHHHHHHhhcCcc
Confidence 99999999999865 467776 67899999999999999999 6899999999999999975 88
Q ss_pred eEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHh
Q 010494 358 STLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIE 437 (509)
Q Consensus 358 ~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~ 437 (509)
+|+||+||+++ ..+||+|||+|+.+++|++|+++||||++|++++
T Consensus 366 ~~~~i~g~~~~-----------------------------------~~~TI~lrG~te~~l~E~er~l~DAl~~~r~av~ 410 (553)
T 3ko1_A 366 KMVFVEGAKNP-----------------------------------KSISILIRGGLERLVDETERALRDALGTVADVIK 410 (553)
T ss_dssp CCEEEESCSSS-----------------------------------SCEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeccCCCC-----------------------------------ceEEEeeeccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999876 3679999999999999999999999999999999
Q ss_pred hC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 438 EG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 438 ~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
+| +|||||++|++++.+|++++...++.+|+ ++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 411 ~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~-~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h 477 (553)
T 3ko1_A 411 DGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQL-AVEAYANALESLVSILIENAGFDPIDLLMKLRSTH 477 (553)
T ss_dssp HCEEEETTTHHHHHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred cCceecCCceeEeHHHHHHHHhccccCChhHh-HHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 99 99999999999999999998878888875 89999999999999999999999999999998753
|
| >1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-89 Score=743.05 Aligned_cols=420 Identities=23% Similarity=0.378 Sum_probs=383.2
Q ss_pred CCC-CCcceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEe
Q 010494 1 MAA-LSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKI 79 (509)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~i 79 (509)
|++ |.+|+++++++.+ +.|| ++||..|+.|+..|+++|+|||||+||||||+++.|+++|
T Consensus 1 m~~~~~~~~~~l~~~~~-----------------~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~i 61 (548)
T 1q3q_A 1 MAQLSGQPVVILPEGTQ-----------------RYVG--RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVV 61 (548)
T ss_dssp --------CCCSCTTCE-----------------EEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEE
T ss_pred CCCcCCCCcccccCCcc-----------------eech--HHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEE
Confidence 666 7778877777633 4558 8999999999999999999999999999999999999999
Q ss_pred ccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 010494 80 VNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLS 159 (509)
Q Consensus 80 TnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~ 159 (509)
||||+||+|+|+++||+ |+|++++|++||+++||||||+|+||++||+++.+++++|+||+.|++||++|++.+++
T Consensus 62 TnDG~tIlk~i~v~hP~----Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~ 137 (548)
T 1q3q_A 62 TNDCATILDKIDLQHPA----AKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQE 137 (548)
T ss_dssp ESCHHHHHHHSCCCSHH----HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHhhccchH----HHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcccCc--H-HHHHHhhhhcCC------chhhhhHHHHHHHhhccC--C-------cEEEe--cCCCcccceEEe
Q 010494 160 ELKLTSREVED--H-ELADVAAVSAGN------DYTVGKMISDALQQVGRN--G-------VVTIE--KGKCTENSLEIV 219 (509)
Q Consensus 160 ~L~~~s~~v~~--~-~l~~va~ts~~~------~~~l~~li~~Ai~~v~~~--g-------~I~v~--~g~~~~ds~~li 219 (509)
+|++++++++. . .|.++|+|++++ ++.|+++++||+.+++++ | .|+++ +|++++|| +++
T Consensus 138 ~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds-~lv 216 (548)
T 1q3q_A 138 ILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEES-ELV 216 (548)
T ss_dssp HHHHHCEECCTTCHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGC-EEE
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccce-EEE
Confidence 99999999874 4 899999988654 589999999999999875 4 57665 99999999 999
Q ss_pred eceEEeccCCCCccccCcCCceeEeeceeeEeeccc-------------CCCHHHH-----------HHHHHHHHhcCCC
Q 010494 220 EGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKDM-----------FKILDSAVKEKYP 275 (509)
Q Consensus 220 ~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~l-----------~~~le~i~~~~~~ 275 (509)
+|++|+++|.|||| +++++||||+++|++ |++++++ .++++++.+.|+|
T Consensus 217 ~G~v~dk~~~~~~m-------~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~ 289 (548)
T 1q3q_A 217 RGVVIDKEVVHPRM-------PKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGAN 289 (548)
T ss_dssp SSEEESCCCSSTTS-------CSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred eeEEEeccCCCCCC-------cceecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 99999999999985 567999999999998 7788886 6788999999999
Q ss_pred eEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe
Q 010494 276 IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT 355 (509)
Q Consensus 276 lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~ 355 (509)
|||++++|+++++++|+.|+ |+||+ ++++++|+|||++|||++++ +++++++++||+|+.|++.
T Consensus 290 lvi~~~~I~~~al~~L~~~~------I~av~-----~~~k~~le~ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~ 353 (548)
T 1q3q_A 290 VVFVQKGIDDLAQHYLAKYG------IMAVR-----RVKKSDMEKLAKATGAKIVT-----NVKDLTPEDLGYAEVVEER 353 (548)
T ss_dssp EEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHCCCCBS-----SGGGCCGGGCEEESEEEEE
T ss_pred EEEEcCCcCHHHHHHHHHCC------cEEEc-----cCCHHHHHHHHHHhCCeEec-----ccccCCHHHCCCceEEEEE
Confidence 99999999999999999884 68875 78899999999999999999 6899999999999999975
Q ss_pred ---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHH
Q 010494 356 ---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNAT 432 (509)
Q Consensus 356 ---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~ 432 (509)
+++|++|+||+++ ++|||+|||+|+.+++|++|+++|||+++
T Consensus 354 ~ig~~~~~~~~g~~~~-----------------------------------~~~TI~lrG~te~~l~E~er~l~DAl~~~ 398 (548)
T 1q3q_A 354 KLAGENMIFVEGCKNP-----------------------------------KAVTILIRGGTEHVIDEVERALEDAVKVV 398 (548)
T ss_dssp EETTEEEEEEECCSSC-----------------------------------SSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EecCceEEEEecCCCC-----------------------------------CeEEEEECCCChHHHHHHHHHHHHHHHHH
Confidence 8899999999754 58999999999999999999999999999
Q ss_pred HHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 433 KAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 433 ~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|+++++| +|||||++|++++.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 399 r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~ 469 (548)
T 1q3q_A 399 KDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEA-LAIENFADALKIIPKTLAENAGLDTVEMLVKVISE 469 (548)
T ss_dssp HHHHHSCEEEECTTHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHCCCcccCCcHHHHHHHHHHHHHhhhcCCcHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999 9999999999999999999877777676 58999999999999999999999999999999864
|
| >3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-89 Score=737.76 Aligned_cols=415 Identities=24% Similarity=0.361 Sum_probs=381.3
Q ss_pred cceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhh
Q 010494 6 TPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGET 85 (509)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~t 85 (509)
+| ++++++.++.+ | .+||..|+.||+.|+++|++||||+||||||+++.|+|+|||||+|
T Consensus 4 ~p-~~l~~~~~~~~-----------------g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~t 63 (543)
T 3ruv_A 4 QP-GVLPENMKRYM-----------------G--RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVT 63 (543)
T ss_dssp CC-CSSCSSEEEEE-----------------T--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHH
T ss_pred CC-eeecCCcchhc-----------------c--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHH
Confidence 56 66777655544 7 8899999999999999999999999999999999999999999999
Q ss_pred hhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcC
Q 010494 86 VLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTS 165 (509)
Q Consensus 86 Ilk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s 165 (509)
|||+|+++||+ |+|++++|++||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++
T Consensus 64 Ilk~i~v~hP~----Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s 139 (543)
T 3ruv_A 64 ILREMSVEHPA----AKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIA 139 (543)
T ss_dssp HHHHSCCCCHH----HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCcCHH----HHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC--cH-HHHHHhhhhcCC------chhhhhHHHHHHHhhccC-Cc-----EEEe--cCCCcccceEEeeceEEeccC
Q 010494 166 REVE--DH-ELADVAAVSAGN------DYTVGKMISDALQQVGRN-GV-----VTIE--KGKCTENSLEIVEGMRFDRGF 228 (509)
Q Consensus 166 ~~v~--~~-~l~~va~ts~~~------~~~l~~li~~Ai~~v~~~-g~-----I~v~--~g~~~~ds~~li~Gi~~~~~~ 228 (509)
++++ +. .|.++|+||+++ ++.|+++++||+.+++++ |. |+++ +|+++.|+ ++++|++|+++|
T Consensus 140 ~~v~~~d~~~L~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~~ds-~lv~G~v~dk~~ 218 (543)
T 3ruv_A 140 CEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT-ELIKGVLVDKER 218 (543)
T ss_dssp EECCTTCHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCTTSCCCGGGEEEEEEECSCGGGC-EEESSEEESCCC
T ss_pred CCCCCCCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhccCCCcccceEEEEEcCCCCcccc-eeecceEEeccc
Confidence 9987 45 899999999875 789999999999999987 64 6554 88898888 999999999999
Q ss_pred CCCccccCcCCceeEeeceeeEeeccc-------------CCCHHH-----------HHHHHHHHHhcCCCeEEEeccch
Q 010494 229 LSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIE 284 (509)
Q Consensus 229 ~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~ 284 (509)
.|||| +++++||||+++|++ |+++++ +.++++++.+.|+||||++++|+
T Consensus 219 ~~~~m-------~~~~~n~kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~ 291 (543)
T 3ruv_A 219 VSAQM-------PKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGID 291 (543)
T ss_dssp SCTTS-------CSEEEEEEEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBC
T ss_pred cCccc-------cccccCcEEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99974 678999999999984 566666 55667899999999999999999
Q ss_pred HHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEE
Q 010494 285 QQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLI 361 (509)
Q Consensus 285 ~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~ 361 (509)
++++++|..+ +|++|+ ++++.+|+|||++|||++++ +++++++++||+|+.|++. +++|+|
T Consensus 292 ~~al~~L~~~------gI~~v~-----~v~k~~le~ia~~tGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~ 355 (543)
T 3ruv_A 292 DLAQHYLAKE------GIVAAR-----RVKKSDMEKLAKATGANVIA-----AIAALSAQDLGDAGLVEERKISGDSMIF 355 (543)
T ss_dssp HHHHHHHHHT------TCEEEC-----SCCHHHHHHHHHHHCCCEES-----CGGGCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHc------CcEEEe-----eCCHHHHHHHHHHhCCceec-----ccccCCHHHCCcccEEEEEEeCCceEEE
Confidence 9999999765 467776 67899999999999999999 6899999999999999975 889999
Q ss_pred EecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-c
Q 010494 362 VTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-I 440 (509)
Q Consensus 362 ~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-v 440 (509)
|+||+++ ..+||+|||+|+.+++|++|+++||||++|+++++| +
T Consensus 356 i~g~~~~-----------------------------------~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~i 400 (543)
T 3ruv_A 356 VEECKHP-----------------------------------KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRI 400 (543)
T ss_dssp EECCSSC-----------------------------------SSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred EECCCCC-----------------------------------ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 9999876 367999999999999999999999999999999999 9
Q ss_pred cccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 441 VVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 441 vpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
|||||++|++++.+|++++.+.++.+|+ ++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 401 VpGGGa~e~~~s~~L~~~~~~~~g~eq~-~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h 463 (543)
T 3ruv_A 401 VSGGGSTEVELSMKLREYAEGISGREQL-AVRAFADALEVIPRTLAENAGLDAIEILVKVRAAH 463 (543)
T ss_dssp EETTTHHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ecCCcHHHHHHHHHHHHHhhcCChHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999999999999999998888888874 89999999999999999999999999999998753
|
| >1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-88 Score=734.53 Aligned_cols=416 Identities=23% Similarity=0.372 Sum_probs=374.5
Q ss_pred CcceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchh
Q 010494 5 STPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGE 84 (509)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~ 84 (509)
.+|+++++++.++. || ++||..|+.|+..|+++|+|||||+||||||+++.|+++|||||+
T Consensus 4 ~~~~~~l~~~~~~~-----------------~g--~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~ 64 (543)
T 1a6d_B 4 GQPIFILKEGTKRE-----------------SG--KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGV 64 (543)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHH
T ss_pred CcchhhcCCcchhh-----------------hh--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHH
Confidence 46777777775443 47 789999999999999999999999999999999999999999999
Q ss_pred hhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhc
Q 010494 85 TVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLT 164 (509)
Q Consensus 85 tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~ 164 (509)
||+|+|+++||+ |+|++++|++||+++||||||+|+||++||+++.+++++|+||+.|++||++|++.++++|+++
T Consensus 65 tIlk~i~v~hP~----Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~ 140 (543)
T 1a6d_B 65 TILKEMDVEHPA----AKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEI 140 (543)
T ss_dssp HHHHHSCCCSHH----HHHHHHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccchH----HHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCc--H-HHHHHhhhhcCC------chhhhhHHHHHHHhhccC--Cc-------EEEe--cCCCcccceEEeeceEE
Q 010494 165 SREVED--H-ELADVAAVSAGN------DYTVGKMISDALQQVGRN--GV-------VTIE--KGKCTENSLEIVEGMRF 224 (509)
Q Consensus 165 s~~v~~--~-~l~~va~ts~~~------~~~l~~li~~Ai~~v~~~--g~-------I~v~--~g~~~~ds~~li~Gi~~ 224 (509)
+++++. . .|.++|+|++++ ++.|+++++||+.+++++ |. |+++ +|++++|+ ++++|++|
T Consensus 141 a~~v~~~~~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds-~lv~G~v~ 219 (543)
T 1a6d_B 141 STKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDT-QLINGIIV 219 (543)
T ss_dssp CEECCTTHHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGC-EEESEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccce-eEEccEEE
Confidence 999874 3 899999988653 689999999999999876 53 6665 99999999 99999999
Q ss_pred eccCCCCccccCcCCceeEeeceeeEeeccc-------------CCCHHHH-----------HHHHHHHHhcCCCeEEEe
Q 010494 225 DRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKDM-----------FKILDSAVKEKYPIVIVA 280 (509)
Q Consensus 225 ~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~l-----------~~~le~i~~~~~~lvi~~ 280 (509)
+++|.|||| +++++||||+++|++ |++++++ .++++++.+.|+||||++
T Consensus 220 dk~~~~~~m-------~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~ 292 (543)
T 1a6d_B 220 DKEKVHPGM-------PDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQ 292 (543)
T ss_dssp SCCCSSTTS-------CSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred ecCCCCCCC-------cceecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 999999985 567999999999998 7777775 678899999999999999
Q ss_pred ccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cC
Q 010494 281 EDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KD 357 (509)
Q Consensus 281 ~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~ 357 (509)
++|+++++++|+.|+ |+||+ ++++.+|+|||++|||++++ +++++++++||+|+.|++. ++
T Consensus 293 ~~I~~~al~~L~~~~------I~av~-----~v~k~~le~ia~~tGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~~ 356 (543)
T 1a6d_B 293 KGIDDMAQHYLSRAG------IYAVR-----RVKKSDMDKLAKATGASIVS-----TIDEISSSDLGTAERVEQVKVGED 356 (543)
T ss_dssp SCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHTCCEES-----CGGGCCGGGCEEEEEEEEEEETTE
T ss_pred CCcCHHHHHHHHHCC------eeEec-----cCCHHHHHHHHHHhCCceec-----ccccCCHHHCCCceEEEEEEecCc
Confidence 999999999999884 68875 78899999999999999999 6899999999999999974 88
Q ss_pred eEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHh
Q 010494 358 STLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIE 437 (509)
Q Consensus 358 ~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~ 437 (509)
+|++|+||+++ ++|||+|||+|+.+++|++|+++|||+++|++++
T Consensus 357 ~~~~~~g~~~~-----------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~~ 401 (543)
T 1a6d_B 357 YMTFVTGCKNP-----------------------------------KAVSILVRGETEHVVDEMERSITDSLHVVASALE 401 (543)
T ss_dssp EEEEEEEESSS-----------------------------------SCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCC-----------------------------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998754 5899999999999999999999999999999999
Q ss_pred hC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 438 EG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 438 ~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+| +|||||++|++++.+|++++...++.+| +++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 402 ~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~ 467 (543)
T 1a6d_B 402 DGAYAAGGGATAAEIAFRLRSYAQKIGGRQQ-LAIEKFADAIEEIPRALAENAGLDPIDILLKLRAE 467 (543)
T ss_dssp HCEEEETTTHHHHHHHHHHHHHHHHTCSSHH-HHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCCccHHHHHHHHHHHHHhhhcCChHH-HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 99 9999999999999999999887778777 48999999999999999999999999999999865
|
| >1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-88 Score=734.78 Aligned_cols=413 Identities=21% Similarity=0.358 Sum_probs=375.9
Q ss_pred ceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhh
Q 010494 7 PIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETV 86 (509)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tI 86 (509)
|+++++++.++ .|| ++||..|+.|+..|+++|+|||||+||||||+++.|+++|||||+||
T Consensus 7 ~~~~l~~~~~~-----------------~~g--~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tI 67 (545)
T 1a6d_A 7 PILVLKEGTQR-----------------EQG--KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATI 67 (545)
T ss_dssp ----------C-----------------EEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHH
T ss_pred cccccCCcchh-----------------hch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHH
Confidence 77777776443 457 89999999999999999999999999999999999999999999999
Q ss_pred hccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCc
Q 010494 87 LKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR 166 (509)
Q Consensus 87 lk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~ 166 (509)
+|+|+++||+ |+|++++|++||+++||||||+|+||++||+++.+++++|+||+.|++||++|++.++++|+++++
T Consensus 68 lk~i~v~hP~----Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~ 143 (545)
T 1a6d_A 68 LKEMDVEHPT----AKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAE 143 (545)
T ss_dssp HHHSCCCSHH----HHHHHGGGGCTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHhhhccchH----HHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-cH-HHHHHhhhhcC------CchhhhhHHHHHHHhhccC---------CcEEEe--cCCCcccceEEeeceEEecc
Q 010494 167 EVE-DH-ELADVAAVSAG------NDYTVGKMISDALQQVGRN---------GVVTIE--KGKCTENSLEIVEGMRFDRG 227 (509)
Q Consensus 167 ~v~-~~-~l~~va~ts~~------~~~~l~~li~~Ai~~v~~~---------g~I~v~--~g~~~~ds~~li~Gi~~~~~ 227 (509)
+ + +. .|.++|+||++ +++.|+++++||+.+++++ +.|+++ +|++++|| ++++|++|+++
T Consensus 144 ~-~~~~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds-~lv~G~v~dk~ 221 (545)
T 1a6d_A 144 K-STDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDT-QFISGIVIDKE 221 (545)
T ss_dssp E-CCCHHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTC-EEESEEEESCC
T ss_pred C-CCCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceee-EEEeeEEEecc
Confidence 9 7 55 89999998865 4689999999999999875 367765 99999999 99999999999
Q ss_pred CCCCccccCcCCceeEeeceeeEeeccc-------------CCCHHHH-----------HHHHHHHHhcCCCeEEEeccc
Q 010494 228 FLSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKDM-----------FKILDSAVKEKYPIVIVAEDI 283 (509)
Q Consensus 228 ~~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~l-----------~~~le~i~~~~~~lvi~~~~i 283 (509)
|.|||| +++++||||+++|++ |++++++ .++++++.+.|+||||++++|
T Consensus 222 ~~~~~m-------~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I 294 (545)
T 1a6d_A 222 KVHSKM-------PDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI 294 (545)
T ss_dssp CSCTTS-------CSEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB
T ss_pred CCCCCC-------cceecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 999985 567999999999998 7777775 678899999999999999999
Q ss_pred hHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEE
Q 010494 284 EQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTL 360 (509)
Q Consensus 284 ~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~ 360 (509)
+++++++|+.|+ |+||+ ++++.+|+|||++|||++++ +++++++++||+|+.|++. +++|+
T Consensus 295 ~~~al~~L~~~~------I~av~-----~~~k~~le~ia~~tGa~iis-----~l~~~~~~~LG~a~~v~~~~ig~~~~~ 358 (545)
T 1a6d_A 295 DDVAQHYLAKEG------IYAVR-----RVKKSDMEKLAKATGAKIVT-----DLDDLTPSVLGEAETVEERKIGDDRMT 358 (545)
T ss_dssp CHHHHHHHHHHT------CEEEC-----SCCHHHHHHHHHHHCCCEES-----SGGGCCGGGCEEEEEEEEEEETTEEEE
T ss_pred cHHHHHHHHHCC------eeEec-----cCCHHHHHHHHHHhCCeeec-----ccccCCHHHCCCceEEEEEEecCceEE
Confidence 999999999884 68875 78899999999999999999 6899999999999999975 78999
Q ss_pred EEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-
Q 010494 361 IVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG- 439 (509)
Q Consensus 361 ~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g- 439 (509)
+|+||+++ ++|||+|||+|+.+++|++|+++|||+++|+++++|
T Consensus 359 ~~~g~~~~-----------------------------------~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~~~g~ 403 (545)
T 1a6d_A 359 FVMGCKNP-----------------------------------KAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGK 403 (545)
T ss_dssp EEEEESCS-----------------------------------SCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred EEecCCCC-----------------------------------ceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99998754 589999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 440 IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 440 vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+|||||++|++++.+|++++...++.+| +++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 404 iVpGGGa~e~~~~~~L~~~~~~~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~ 466 (545)
T 1a6d_A 404 FLWGGGAVEAELAMRLAKYANSVGGREQ-LAIEAFAKALEIIPRTLAENAGIDPINTLIKLKAD 466 (545)
T ss_dssp EEETTTHHHHHHHHHHHHHHHTSCHHHH-HHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred EEeCcCHHHHHHHHHHHHHhhccCccHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999877777777 58999999999999999999999999999999865
|
| >3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-87 Score=722.17 Aligned_cols=403 Identities=20% Similarity=0.316 Sum_probs=369.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.+++..|+.||..|+++|+|||||+||||||+++.|+|+|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 10 ~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~~~GDGT 85 (515)
T 3iyg_H 10 IPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPA----AKTLVDIAKSQDAEVGDGT 85 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHH----HHHHHHHHHHhhceeCcch
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--c----H-HHHHHhhhhcC------Cchh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--D----H-ELADVAAVSAG------NDYT 186 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~----~-~l~~va~ts~~------~~~~ 186 (509)
||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ + . .|.++|+||++ +++.
T Consensus 86 TtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s~~~~~ 165 (515)
T 3iyg_H 86 TSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAF 165 (515)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHhcCCcccccHHH
Confidence 99999999999999999999999999999999999999999999999984 4 3 67999999875 4689
Q ss_pred hhhHHHHHHHhhccC---CcEEEe--cCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc------
Q 010494 187 VGKMISDALQQVGRN---GVVTIE--KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK------ 255 (509)
Q Consensus 187 l~~li~~Ai~~v~~~---g~I~v~--~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~------ 255 (509)
|+++++||+.+++.+ +.|+++ +|+++.|+ ++++|++|+++|.||||.++ |.+++||||+++|++
T Consensus 166 i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~~ds-~lv~G~~~dk~~~~p~~~~~----p~~~en~kIll~~~~Le~~k~ 240 (515)
T 3iyg_H 166 FAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEES-QLVAGVAFKKTFSYAGFEMQ----PKKYHNPMIALLNVELELKAE 240 (515)
T ss_pred HHHHHHHHHHHhcccCCcceEEEEecCCCCccce-EEEeeeEEecCccCcccccC----CccccccEEEEEccccccccc
Confidence 999999999999876 666654 68899998 99999999999999998654 458999999999994
Q ss_pred -------CCCHHHH-----------HHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccch
Q 010494 256 -------IKNPKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (509)
Q Consensus 256 -------i~~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~ 317 (509)
|++++++ .++++++.+.|+||||++++|++.++++|..+ +|+++ +++++.+
T Consensus 241 e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~------gI~~v-----~~~~k~~ 309 (515)
T 3iyg_H 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADR------DMFCA-----GRVPEED 309 (515)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHc------CCccc-----ccccHHH
Confidence 6777776 45688999999999999999999887777433 35555 4788999
Q ss_pred HHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010494 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (509)
Q Consensus 318 L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 394 (509)
|+|||++|||++++ +++++++++||+|+.|++. +++|++|+||+++
T Consensus 310 leria~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-------------------------- 358 (515)
T 3iyg_H 310 LKRTMMACGGSIQT-----SVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKA-------------------------- 358 (515)
T ss_pred HHHHHHHhCCEEee-----ccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCC--------------------------
Confidence 99999999999999 6899999999999999865 7899999999765
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHH
Q 010494 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (509)
Q Consensus 395 ~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (509)
..|||+|||+|+.+++|++|+++||||++|++++++ +|||||++|++++.+|++++...++.+|+ ++++
T Consensus 359 ---------~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~-~i~~ 428 (515)
T 3iyg_H 359 ---------KTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQL-LIGA 428 (515)
T ss_pred ---------ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCeecCCcHHHHHHHHHHHHHHhcCChHHHH-HHHH
Confidence 478999999999999999999999999999999985 99999999999999999998888888875 8999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 474 FKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 474 ~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|++||+.||++||+|||+|+.+++.+|++.
T Consensus 429 ~a~ALe~ip~~La~NaG~d~~~~v~~l~~~ 458 (515)
T 3iyg_H 429 YAKALEIIPRQLCDNAGFDATNILNKLRAR 458 (515)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999875
|
| >3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-89 Score=738.37 Aligned_cols=422 Identities=20% Similarity=0.277 Sum_probs=373.0
Q ss_pred CCC--CCcceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcE
Q 010494 1 MAA--LSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPK 78 (509)
Q Consensus 1 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~ 78 (509)
|++ |..|++++++++++.+ | .++|..|+.||..|+++|++||||+||||||+++.|+|+
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~-----------------g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ 61 (550)
T 3p9d_G 1 MNFGSQTPTIVVLKEGTDASQ-----------------G--KGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTT 61 (550)
T ss_dssp ---------------CCCEEE-----------------S--HHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEE
T ss_pred CCcccCCcchhhhcCCcchhh-----------------h--HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeE
Confidence 667 8999999999987766 6 789999999999999999999999999999999999999
Q ss_pred eccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 010494 79 IVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALL 158 (509)
Q Consensus 79 iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l 158 (509)
|||||+||+|+|+++||+ |+|++++|++||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++
T Consensus 62 ITnDG~TIlk~i~v~hP~----Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~ 137 (550)
T 3p9d_G 62 ISNDGATILKLLDVVHPA----AKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAV 137 (550)
T ss_dssp EECCHHHHTTTSCCCSHH----HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHccCCCHH----HHHHHHHHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccC--c---H-HHHHHhhhhcC------CchhhhhHHHHHHHhhccC-------CcEEEecCCCcccceEEe
Q 010494 159 SELKLTSREVE--D---H-ELADVAAVSAG------NDYTVGKMISDALQQVGRN-------GVVTIEKGKCTENSLEIV 219 (509)
Q Consensus 159 ~~L~~~s~~v~--~---~-~l~~va~ts~~------~~~~l~~li~~Ai~~v~~~-------g~I~v~~g~~~~ds~~li 219 (509)
++|++++++++ + . .|.++|+||++ +++.|+++++||+.+++++ +++++ +|++++|| +++
T Consensus 138 ~~L~~~s~~v~~~~~~~~~~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~dl~~I~Vikv-~Gg~~~ds-~lv 215 (550)
T 3p9d_G 138 EKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKI-PGGAMEES-LFI 215 (550)
T ss_dssp HHHHHSEECCCCC------CHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHCCSSSCCGGGCCCCBC-CSSCGGGC-CCC
T ss_pred HHHHHhcccCCCCcchhHHHHHHHHHHhccCccccccHhHHHHHHHHHHHHhCccccCchheeEEEe-cCCCccce-eEE
Confidence 99999999875 2 4 79999999875 3689999999999999843 44554 69999999 999
Q ss_pred eceEEeccCCCCccccCcCCceeEeeceeeEeeccc-------------CCCHHHHHH-----------HHHHHHhcCCC
Q 010494 220 EGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKDMFK-----------ILDSAVKEKYP 275 (509)
Q Consensus 220 ~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~l~~-----------~le~i~~~~~~ 275 (509)
+|++|+++|.||||.+ |+..++||+|+++|++ |++++++.+ +++++.+.|++
T Consensus 216 ~G~~~dk~~~s~yf~~----~~~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~ 291 (550)
T 3p9d_G 216 NGVAFKKTFSYAGFEQ----QPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGAN 291 (550)
T ss_dssp SSEEECCCSSCTTCSC----SCSCCSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred eeEEEecccccccccc----CcccccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999865 4556999999999997 566666655 57788999999
Q ss_pred eEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE-
Q 010494 276 IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI- 354 (509)
Q Consensus 276 lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v- 354 (509)
|||++++|++.++++|..+ +|+++ +++++.+|+|||++|||++++ +++++++++||+|+.+++
T Consensus 292 vVi~~~~I~dla~~~L~~~------gI~~v-----~~v~k~~lerIa~~tGa~iis-----~l~~l~~~~LG~a~~v~~~ 355 (550)
T 3p9d_G 292 IVLSKLPIGDLATQFFADR------NIFCA-----GRVSADDMNRVIQAVGGSIQS-----TTSDIKPEHLGTCALFEEM 355 (550)
T ss_dssp EEEESSCCCHHHHHTTGGG------TCEEE-----ECCCTTHHHHHHHHTCCCCBS-----SGGGCCGGGCCCCSBCCCC
T ss_pred EEEECCCccHHHHHHHHHc------CCccc-----cCcCHHHHHHHHHHhCCceec-----chhhCCHHHcCCceEEEEE
Confidence 9999999999888776433 45655 478899999999999999999 689999999999999986
Q ss_pred --ecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHH
Q 010494 355 --TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNAT 432 (509)
Q Consensus 355 --~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~ 432 (509)
+++++++|+||+++ ++|||+|||+|+.+++|++|+++||||++
T Consensus 356 ~ig~e~~~~~~g~~~~-----------------------------------~~~tI~lrG~te~~l~E~kr~l~DAl~~~ 400 (550)
T 3p9d_G 356 QIGSERYNLFQGCPQA-----------------------------------KTCTLLLRGGAEQVIAEVERSLHDAIMIV 400 (550)
T ss_dssp CCSSSCCEEEBCCTTC-----------------------------------CCCCCCBCSSSHHHHHHHHHHHHHHHHHH
T ss_pred EeCCeEEEEEecCCCC-----------------------------------ceeEEEEeCCcHHHHHHHHHHHHhHHHHH
Confidence 58899999999754 57899999999999999999999999999
Q ss_pred HHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 433 KAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 433 ~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|+++++| +|||||++|++++.+|++++...++.+|+ ++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 401 r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~-~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~ 471 (550)
T 3p9d_G 401 KRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQM-IINAFAKALEVIPRQLCENAGFDAIEILNKLRLA 471 (550)
T ss_dssp HHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHH-HHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHH
T ss_pred HHHHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999 99999999999999999998888888885 8999999999999999999999999999999875
|
| >3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-88 Score=736.14 Aligned_cols=412 Identities=21% Similarity=0.314 Sum_probs=380.3
Q ss_pred chhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHh
Q 010494 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR 110 (509)
Q Consensus 31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~ 110 (509)
+|...|| ++||..|+.||..|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |+|++++|++
T Consensus 16 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~ 89 (559)
T 3p9d_A 16 GGEKISG--DDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPA----GKILVELAQQ 89 (559)
T ss_dssp SCEEEET--HHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHH----HHHHHHHHHH
T ss_pred cccccch--HHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHH----HHHHHHHHHH
Confidence 6889999 999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-cCcccCc--H-HHHHHhhhhcCC---
Q 010494 111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL-TSREVED--H-ELADVAAVSAGN--- 183 (509)
Q Consensus 111 ~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~-~s~~v~~--~-~l~~va~ts~~~--- 183 (509)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++ ++++++. . .|.++|+||+++
T Consensus 90 qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~L~~vA~tsl~sK~~ 169 (559)
T 3p9d_A 90 QDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKII 169 (559)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CTTHHHHHHHTTSSSGG
T ss_pred HHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999 9999875 3 899999999986
Q ss_pred ---chhhhhHHHHHHHhhcc-----CCc-----EE--EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEee--c
Q 010494 184 ---DYTVGKMISDALQQVGR-----NGV-----VT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFH--D 246 (509)
Q Consensus 184 ---~~~l~~li~~Ai~~v~~-----~g~-----I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~--~ 246 (509)
++.|+++++||+.++++ ++. |+ ..+|++++|+ ++++|++|+++|.||| |+++++ |
T Consensus 170 ~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds-~lv~G~v~dk~~~~~~-------m~~~ie~~n 241 (559)
T 3p9d_A 170 GADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATES-LLVPGYALNCTVASQA-------MPKRIAGGN 241 (559)
T ss_dssp GTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCC-BCCSEECCCCCCSSTT-------SCSEECSSS
T ss_pred cchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccce-eEeccEEEeecccCCC-------cceeeccCC
Confidence 78999999999999984 243 33 3469999998 9999999999999997 466888 9
Q ss_pred eeeEeecccC-------------CCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhccccccee
Q 010494 247 GKLLLVDKKI-------------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKA 302 (509)
Q Consensus 247 ~kIll~d~~i-------------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i 302 (509)
|||+++|+++ +++++ +.++++++.+.|+||||++++|+++++++|+.|+ |
T Consensus 242 ~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~------I 315 (559)
T 3p9d_A 242 VKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAK------I 315 (559)
T ss_dssp BCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTT------C
T ss_pred ceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcC------C
Confidence 9999999986 45544 5778999999999999999999999999999985 5
Q ss_pred eeecCcccccCccchHHHHHHHhCCeeeecccCccc-cCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHH
Q 010494 303 AAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTL-DKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEI 378 (509)
Q Consensus 303 ~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~-~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l 378 (509)
+||+ ++++.+|+|||++|||+++++..++.+ +++++++||+|+.|+ +++++|++|+||+++
T Consensus 316 ~av~-----~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~---------- 380 (559)
T 3p9d_A 316 MGVR-----RCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKH---------- 380 (559)
T ss_dssp EEES-----SCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESSS----------
T ss_pred ceEc-----cCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCCC----------
Confidence 7765 788999999999999999997655554 889999999999998 578999999998754
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHh
Q 010494 379 RSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEG 457 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~ 457 (509)
++|||+|||+|+.+++|++|+++|||+++|+++++| +|||||++|++++.+|++
T Consensus 381 -------------------------~~~tI~lrG~te~~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~ 435 (559)
T 3p9d_A 381 -------------------------SSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDN 435 (559)
T ss_dssp -------------------------CCCCEEEEESCHHHHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHH
T ss_pred -------------------------CEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999 999999999999999999
Q ss_pred HhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 458 IKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 458 ~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++.+.++.+|+ ++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 436 ~~~~~~g~eq~-~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~ 480 (559)
T 3p9d_A 436 FATTVGSREQL-AIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSY 480 (559)
T ss_dssp HHTTSCTTHHH-HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HhcccChHHHH-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 98888787774 8999999999999999999999999999999875
|
| >3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-87 Score=716.77 Aligned_cols=403 Identities=22% Similarity=0.312 Sum_probs=373.0
Q ss_pred hccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCC--CCcEeccchhhhhccccccCcccchHhHHHHHHHHhh
Q 010494 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKY--GPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (509)
Q Consensus 34 i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~--g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~ 111 (509)
-.|| .++|..|+.||+.|+++|+|||||+||||||+++. |+|+|||||+||+|+|+++||. |+|++++|++|
T Consensus 5 ~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~----Akll~e~a~~q 78 (513)
T 3iyg_B 5 EERA--ETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPA----AKVLVDMSRVQ 78 (513)
T ss_pred hhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHH----HHHHHHHHHHh
Confidence 4578 89999999999999999999999999999999999 9999999999999999999998 99999999999
Q ss_pred hhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC-----cH-HHHHHhhhhcC---
Q 010494 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-----DH-ELADVAAVSAG--- 182 (509)
Q Consensus 112 d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~-~l~~va~ts~~--- 182 (509)
|+++||||||+|+||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ +. .|.++|+||++
T Consensus 79 d~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~tslssK~ 158 (513)
T 3iyg_B 79 DDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKL 158 (513)
T ss_pred hhhhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999986 34 89999998875
Q ss_pred ---CchhhhhHHHHHHHhhccC---CcEEEe--cCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecc
Q 010494 183 ---NDYTVGKMISDALQQVGRN---GVVTIE--KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDK 254 (509)
Q Consensus 183 ---~~~~l~~li~~Ai~~v~~~---g~I~v~--~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~ 254 (509)
+++.|+++++||+.+++++ +.|+++ +|+++.|+ ++++|++|+++|.+| |+++++||||+++|+
T Consensus 159 ~~~~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds-~lv~G~v~dk~~~~~--------m~~~~en~kIll~~~ 229 (513)
T 3iyg_B 159 LTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANT 229 (513)
T ss_pred cccchHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccce-eEEeeEEEeccccCC--------CceeecCceEEEEcC
Confidence 4589999999999999987 777654 69999999 999999999999876 678899999999998
Q ss_pred --------------cCCCHHHHHH-----------HHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcc
Q 010494 255 --------------KIKNPKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA 309 (509)
Q Consensus 255 --------------~i~~~~~l~~-----------~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~ 309 (509)
.|++++++.+ +++++.+.|+||||++++|+++++++|..+ +|+||++|+
T Consensus 230 ~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~------~I~av~~~~ 303 (513)
T 3iyg_B 230 GMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAA------GVMAIEHAD 303 (513)
T ss_pred CcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHc------CceEEecCC
Confidence 3667777755 688899999999999999999999999765 589999886
Q ss_pred cccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhhhh
Q 010494 310 FGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITE 386 (509)
Q Consensus 310 ~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~ 386 (509)
+ .+|+|||++|||++++ +++++++++||+|+.|+ ++++++++|.||+++
T Consensus 304 ~-----~~le~ia~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~------------------ 355 (513)
T 3iyg_B 304 F-----VGVERLALVTGGEIAS-----TFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALG------------------ 355 (513)
T ss_pred H-----HHHHHHHHHhCCEEec-----ccccCCHhHCCcccEEEEEEECCeEEEEEecCCCC------------------
Confidence 4 5799999999999999 68999999999999998 578999999998643
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhh-CccccCchhHHHHHHHHHhHhccCCcH
Q 010494 387 ERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE-GIVVGGGCSLLRLSAKVEGIKELLDNE 465 (509)
Q Consensus 387 ~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~-gvvpGGGa~e~~ls~~L~~~~~~~~~~ 465 (509)
++|||+|||+|+.+++|++|+++|||+++|+++++ ++|||||++|++++.+|++++.+.++.
T Consensus 356 -----------------~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~ 418 (513)
T 3iyg_B 356 -----------------EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGK 418 (513)
T ss_pred -----------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCCcHHHHHHHHHHHHHhhccCcH
Confidence 58999999999999999999999999999999999 599999999999999999998878787
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 466 EQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 466 ~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+|+ ++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 419 ~q~-~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~ 455 (513)
T 3iyg_B 419 EAV-AMESYAKALRMLPTIIADNAGYDSADLVAQLRAA 455 (513)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 775 8999999999999999999999999999999875
|
| >3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-88 Score=727.21 Aligned_cols=412 Identities=19% Similarity=0.296 Sum_probs=377.2
Q ss_pred chhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHh
Q 010494 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR 110 (509)
Q Consensus 31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~ 110 (509)
.|+..|| ++||..|+.|+..|+++|++||||+||||||+++.|+|+|||||+||+|+|+++||+ |+|++++|++
T Consensus 11 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----akll~e~a~~ 84 (528)
T 3p9d_D 11 FKNKEKP--QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPV----ARMLVEVSAA 84 (528)
T ss_dssp SCBCCCH--HHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTT----HHHHHHHHHH
T ss_pred cchhcch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHH----HHHHHHHHHH
Confidence 4677889 899999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCC----
Q 010494 111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN---- 183 (509)
Q Consensus 111 ~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~---- 183 (509)
||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ +. .|.++|+||+++
T Consensus 85 qd~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~l~~va~tsl~sK~~~ 164 (528)
T 3p9d_D 85 QDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVS 164 (528)
T ss_dssp HHHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCHHHHHHHHHHHSCSSSCS
T ss_pred hhhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999987 55 899999999986
Q ss_pred --chhhhhHHHHHHHhhcc--CCcEE-------EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEee
Q 010494 184 --DYTVGKMISDALQQVGR--NGVVT-------IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLV 252 (509)
Q Consensus 184 --~~~l~~li~~Ai~~v~~--~g~I~-------v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~ 252 (509)
++.|+++++||+.++++ +|.|. ..+|++++|+ ++++|++|+++|.||+| |++.++||||+++
T Consensus 165 ~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds-~lv~G~v~dk~~~~~~~------m~~~ien~kIll~ 237 (528)
T 3p9d_D 165 QYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDT-EMIDGVVLTQTAIKSAG------GPTRKEKAKIGLI 237 (528)
T ss_dssp TTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCC-EEESSCBCCCCCCCSSS------CCSEESSEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccce-EEEeeeEEeecccCccc------CcccccCceEEEE
Confidence 68999999999999987 34432 2359999998 99999999999999985 7789999999999
Q ss_pred cccCC-------------CHHH-----------HHHHHHHHHhcCCCeEEEeccc-----hHHHHHHHHHhcccccceee
Q 010494 253 DKKIK-------------NPKD-----------MFKILDSAVKEKYPIVIVAEDI-----EQQALALLIRNKLRGVLKAA 303 (509)
Q Consensus 253 d~~i~-------------~~~~-----------l~~~le~i~~~~~~lvi~~~~i-----~~~al~~l~~n~~~~~~~i~ 303 (509)
|++++ ++++ +.++++++.+.|+||||++++| +++++++|..| +|+
T Consensus 238 ~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~------~I~ 311 (528)
T 3p9d_D 238 QFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKL------NIM 311 (528)
T ss_dssp CCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTT------SCC
T ss_pred eccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHc------CcE
Confidence 99765 4443 6778999999999999999999 99999999876 478
Q ss_pred eecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE---ecCeEEEEecCCChhHHHHHHHHHHH
Q 010494 304 AIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRS 380 (509)
Q Consensus 304 aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v---~~~~~~~~~g~~~~~~i~~ri~~l~~ 380 (509)
||+ ++++.+|+|||++|||++++ +++++++++||+|+.|++ +++++++|++|.+..
T Consensus 312 av~-----~~~k~~le~ia~~tGa~ii~-----~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~----------- 370 (528)
T 3p9d_D 312 VVK-----DIEREEIEFLSKGLGCKPIA-----DIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNN----------- 370 (528)
T ss_dssp EEE-----CCCTHHHHHHHHHHTCCCCS-----CSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGG-----------
T ss_pred EEE-----eCCHHHHHHHHHHHCCEEec-----ccccCCHHHCCcccEEEEEEECCEEEEEEEcccccC-----------
Confidence 887 66789999999999999999 588999999999999985 467889999876210
Q ss_pred HHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHh
Q 010494 381 LAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIK 459 (509)
Q Consensus 381 ~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~ 459 (509)
.+++|||+|||+|+.+++|++|+++|||+++|+++++| +|||||++|++++.+|++++
T Consensus 371 ---------------------~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~ 429 (528)
T 3p9d_D 371 ---------------------ARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEA 429 (528)
T ss_dssp ---------------------GCCCCEEECCCSSTTHHHHHHHHHTTTHHHHHHHHHSSCEEETTTHHHHHHHHHHHHCC
T ss_pred ---------------------CCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHHh
Confidence 14689999999999999999999999999999999999 99999999999999999998
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 460 ELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 460 ~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
.+.++.+| +++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 430 ~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h 473 (528)
T 3p9d_D 430 RSMEGVQA-FIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKH 473 (528)
T ss_dssp TTSCHHHH-TTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCC
T ss_pred hccChHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77777777 589999999999999999999999999999998853
|
| >3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-86 Score=717.29 Aligned_cols=408 Identities=21% Similarity=0.300 Sum_probs=372.3
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhh
Q 010494 35 YFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL 114 (509)
Q Consensus 35 ~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~ 114 (509)
.|| .++|..|+.|+..|+++|+|||||+||+|||+++.|+++|||||+||||+|+++||+ |+|++++|++||++
T Consensus 6 ~~g--~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~----akll~~~a~~qd~e 79 (529)
T 3iyg_A 6 STG--EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKVLCELADLQDKE 79 (529)
T ss_pred hch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChH----HHHHHHHHHHhhhh
Confidence 468 899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-cCcccC--cH-HHHHHhhhhcC------Cc
Q 010494 115 AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL-TSREVE--DH-ELADVAAVSAG------ND 184 (509)
Q Consensus 115 ~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~-~s~~v~--~~-~l~~va~ts~~------~~ 184 (509)
+||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++ ++++++ +. .|.++|+||++ ++
T Consensus 80 ~GDGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~~~~~~ 159 (529)
T 3iyg_A 80 VGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGING 159 (529)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcccccH
Confidence 9999999999999999999999999999999999999999999999999 999987 44 89999999986 36
Q ss_pred hhhhhHHHHHHHhhc---cCC-----c--EE--EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEee
Q 010494 185 YTVGKMISDALQQVG---RNG-----V--VT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLV 252 (509)
Q Consensus 185 ~~l~~li~~Ai~~v~---~~g-----~--I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~ 252 (509)
+.|+++++||+.+++ ++| . |+ ..+|+++.|| ++++|++|+++|.||+ |++.++||||+++
T Consensus 160 ~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIlll 231 (529)
T 3iyg_A 160 DFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMES-MLINGYALNCVVGSQG-------MPKRIVNAKIACL 231 (529)
T ss_pred HHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccce-EEEeeeEEecCccccc-------CCcccCCceEEEe
Confidence 899999999999997 333 2 44 3589999998 9999999999999997 4567999999999
Q ss_pred cccC-------------CCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCc
Q 010494 253 DKKI-------------KNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAP 308 (509)
Q Consensus 253 d~~i-------------~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~ 308 (509)
|+++ +++++ +.++++++.+.|+||||++++|+++++++|..|+ |+||+
T Consensus 232 ~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~g------I~av~-- 303 (529)
T 3iyg_A 232 DFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAG------AMAVR-- 303 (529)
T ss_pred cCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC------Cceec--
Confidence 9964 44444 4567889999999999999999999999999884 78886
Q ss_pred ccccCccchHHHHHHHhCCeeeecccCcc-ccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHhh
Q 010494 309 AFGERKSHYLDDIAILTGGLVIRDEMGLT-LDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEI 384 (509)
Q Consensus 309 ~~~~~~~~~L~~ia~~tG~~ii~~~~~~~-~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~ 384 (509)
++++.+|+|||++|||+++++..+++ .+++++++||+|+.|+ +++++|++|+||+++
T Consensus 304 ---~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~---------------- 364 (529)
T 3iyg_A 304 ---RVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKAR---------------- 364 (529)
T ss_pred ---cCCHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCC----------------
Confidence 67899999999999999999654443 2456678999999998 678999999999765
Q ss_pred hhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCC
Q 010494 385 TEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLD 463 (509)
Q Consensus 385 ~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~ 463 (509)
++|||+|||+|+.+++|.+|+++|||+++|+++++| +||||||+|+++|.+|++++.+.+
T Consensus 365 -------------------~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~ 425 (529)
T 3iyg_A 365 -------------------TSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMG 425 (529)
T ss_pred -------------------ceEEEEECCchHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHHHHhhhcC
Confidence 478999999999999999999999999999999999 999999999999999999998888
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 464 NEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 464 ~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+.+|+ ++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 426 g~eq~-~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~ 464 (529)
T 3iyg_A 426 SREQL-AIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAF 464 (529)
T ss_pred ChHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88885 8999999999999999999999999999999875
|
| >3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-86 Score=710.31 Aligned_cols=405 Identities=22% Similarity=0.343 Sum_probs=369.8
Q ss_pred hhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhh
Q 010494 33 EVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTN 112 (509)
Q Consensus 33 ~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d 112 (509)
.-.|| .+||..|+.|++.|+++|++||||+||||||+++.|+|+|||||+||+|+|+++||+ |+|++++|++||
T Consensus 4 ~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~----Akll~~~a~~qd 77 (515)
T 3iyg_E 4 SRLMG--LEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI----AKLMVELSKSQD 77 (515)
T ss_pred hhhch--HHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHH----HHHHHHHHHHhh
Confidence 34578 899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc----H-HHHHHhhhhcCC----
Q 010494 113 DLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED----H-ELADVAAVSAGN---- 183 (509)
Q Consensus 113 ~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~----~-~l~~va~ts~~~---- 183 (509)
+++||||||+||||++||+++.+++.+|+||+.|++||++|++.++++|++++++++. . .|.++|+||+++
T Consensus 78 ~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~l~~vA~tsl~sK~i~ 157 (515)
T 3iyg_E 78 DEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVN 157 (515)
T ss_pred hhhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCHHHHHHHHHHHhcccchh
Confidence 9999999999999999999999999999999999999999999999999999998753 3 899999999986
Q ss_pred --chhhhhHHHHHHHhhccC-------CcEE--EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEee
Q 010494 184 --DYTVGKMISDALQQVGRN-------GVVT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLV 252 (509)
Q Consensus 184 --~~~l~~li~~Ai~~v~~~-------g~I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~ 252 (509)
.+.|+++++||+..+.+. +.|+ ..+|+++.|+ ++++|++|+++|.|||| ++.++||+|+++
T Consensus 158 ~~~~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds-~lv~G~~~dk~~~~~~m-------~~~~~~~kIall 229 (515)
T 3iyg_E 158 SCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDT-KLIKGVIVDKDFSHPQM-------PKQVEDAKIAIL 229 (515)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccc-eEEeeEEEecccccccc-------cccCCCceEEEE
Confidence 378999999999998652 2344 3589999998 99999999999999985 456778899888
Q ss_pred ccc-------------CCCHHHH-----------HHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCc
Q 010494 253 DKK-------------IKNPKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAP 308 (509)
Q Consensus 253 d~~-------------i~~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~ 308 (509)
+++ |++++++ .++++++.+.|+||||++++|+++++++|+.|+ +.+|+
T Consensus 230 ~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~------I~~v~-- 301 (515)
T 3iyg_E 230 TCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQND------LPAVR-- 301 (515)
T ss_pred cCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCC------CEEEe--
Confidence 764 5667775 567899999999999999999999999999985 46666
Q ss_pred ccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE-----ecCeEEEEecCCChhHHHHHHHHHHHHHh
Q 010494 309 AFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI-----TKDSTLIVTDGSTRAAVEKRISEIRSLAE 383 (509)
Q Consensus 309 ~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v-----~~~~~~~~~g~~~~~~i~~ri~~l~~~~~ 383 (509)
++++.+|+|||++|||++++ +++++++++||+|+.|++ ++++|++|+||+++
T Consensus 302 ---~v~k~~le~ia~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~--------------- 358 (515)
T 3iyg_E 302 ---WVGGPEIELIAIATGGRIVP-----RFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNS--------------- 358 (515)
T ss_pred ---ccCHHHHHHHHHHhCCEEec-----ccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCC---------------
Confidence 45688999999999999999 689999999999999987 45899999999865
Q ss_pred hhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccC
Q 010494 384 ITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELL 462 (509)
Q Consensus 384 ~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~ 462 (509)
..+||+|||+|+.+++|++|+++|||+++|+++++| +|||||++|++++.+|++++...
T Consensus 359 --------------------~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~~~~L~~~~~~~ 418 (515)
T 3iyg_E 359 --------------------RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKC 418 (515)
T ss_pred --------------------ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHhccC
Confidence 367999999999999999999999999999999999 99999999999999999998888
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 463 DNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 463 ~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++.+| +|+++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 419 ~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~ 458 (515)
T 3iyg_E 419 PTLEQ-YAMRAFADALEVIPMALAENSGMNPIQTMTEVRAR 458 (515)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88887 58999999999999999999999999999999874
|
| >3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-86 Score=718.84 Aligned_cols=412 Identities=23% Similarity=0.356 Sum_probs=371.2
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhh
Q 010494 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (509)
Q Consensus 32 k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~ 111 (509)
+...|| ++||..|+.||..|+++|+|||||+||||||+++.|+|+|||||+||+|+|+++||+ |+|++++|++|
T Consensus 38 ~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~q 111 (562)
T 3p9d_E 38 KKRQHG--LEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEI----AKLLVQLSKSQ 111 (562)
T ss_dssp CSCSHH--HHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHH----HHHHHHHHHHH
T ss_pred ceecch--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHH----HHHHHHHHHHH
Confidence 567789 899999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc-------HHHHHHhhhhcCC-
Q 010494 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-------HELADVAAVSAGN- 183 (509)
Q Consensus 112 d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-------~~l~~va~ts~~~- 183 (509)
|+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++. +.|.++|+||+++
T Consensus 112 d~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e~L~~vA~tSl~sK 191 (562)
T 3p9d_E 112 DDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSK 191 (562)
T ss_dssp HHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHHHHHHHHHHHHSSS
T ss_pred HhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999998864 3699999999986
Q ss_pred -----chhhhhHHHHHHHhhccC-------CcE--EEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceee
Q 010494 184 -----DYTVGKMISDALQQVGRN-------GVV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKL 249 (509)
Q Consensus 184 -----~~~l~~li~~Ai~~v~~~-------g~I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kI 249 (509)
.+.|+++++||+..+.+. +.| ...+|++++|| ++++|++|+++|.||||.++.+ .+..+++|+|
T Consensus 192 ~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds-~lveGmv~dk~~~sp~m~~~~~-~~~~~~~~kI 269 (562)
T 3p9d_E 192 IVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDS-KLINGVILDKDFSHPQMPKCVL-PKEGSDGVKL 269 (562)
T ss_dssp TTTTTHHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGC-EEESSEEESSCCCTTSCCC------TTCSSCEE
T ss_pred hhHHHHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhh-ceeeeEEEecCCCCCCcCcccc-cccccccceE
Confidence 368999999999998652 233 34589999999 9999999999999999755321 1112389999
Q ss_pred Eeeccc-------------CCCHHH-----------HHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeee
Q 010494 250 LLVDKK-------------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAI 305 (509)
Q Consensus 250 ll~d~~-------------i~~~~~-----------l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV 305 (509)
++++++ |+++++ +.++++++.+.|+||||++++|+++++++|+.|+ +.+|
T Consensus 270 all~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~------I~~v 343 (562)
T 3p9d_E 270 AILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQND------LPAV 343 (562)
T ss_dssp CEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTT------CCCE
T ss_pred EEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCC------CEEE
Confidence 998874 455666 5678999999999999999999999999999885 4566
Q ss_pred cCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE-----ecCeEEEEecCCChhHHHHHHHHHHH
Q 010494 306 KAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI-----TKDSTLIVTDGSTRAAVEKRISEIRS 380 (509)
Q Consensus 306 ~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v-----~~~~~~~~~g~~~~~~i~~ri~~l~~ 380 (509)
+ ++++.+|+|||++|||++++ +++++++++||+|+.|++ ++++|++|+||+++
T Consensus 344 ~-----~v~k~~le~ia~~TGa~iis-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~------------ 401 (562)
T 3p9d_E 344 R-----WVGGQELEHIAISTNGRIVP-----RFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKET------------ 401 (562)
T ss_dssp E-----CCCTTTHHHHHHHHCCCEEE-----SSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCC------------
T ss_pred e-----ccCHHHHHHHHHHhCCEEEe-----ccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCC------------
Confidence 6 44688999999999999999 689999999999999998 36899999999865
Q ss_pred HHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHh
Q 010494 381 LAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIK 459 (509)
Q Consensus 381 ~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~ 459 (509)
..+||+|||+|+.+++|++|+++|||+++|+++++| +|||||++|++++.+|++++
T Consensus 402 -----------------------~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~ 458 (562)
T 3p9d_E 402 -----------------------KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEA 458 (562)
T ss_dssp -----------------------SCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHH
T ss_pred -----------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999 99999999999999999998
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 460 ELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 460 ~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
.+.++.+| +++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 459 ~~~~g~eq-~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~ 501 (562)
T 3p9d_E 459 DKQRGIDQ-YAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSK 501 (562)
T ss_dssp HTTCTTHH-HHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred ccCccHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 88888887 48999999999999999999999999999999864
|
| >3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-85 Score=706.45 Aligned_cols=400 Identities=20% Similarity=0.300 Sum_probs=368.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
.++|..|+.||..|+++|||||||+||||||+++.|+++|||||+|||++|+++||+ |+|++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~e~GDGT 83 (515)
T 3iyg_G 8 RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPA----AKSMIEISRTQDEEVGDGT 83 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHH----HHHHHHHHHHhhhhhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc--H-HHHHHhhhhcCC------chhhhhH
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED--H-ELADVAAVSAGN------DYTVGKM 190 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~--~-~l~~va~ts~~~------~~~l~~l 190 (509)
||+|+||++||+++.+++++|+||+.|++||++|++.++++|++++++++. . .|.++|+||+++ .+.++++
T Consensus 84 TtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~va~tsl~sK~i~~~~~~~~~i 163 (515)
T 3iyg_G 84 TSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNI 163 (515)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998874 3 899999999875 3577899
Q ss_pred HHHHHHhhccC--C--------cE--EEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecc----
Q 010494 191 ISDALQQVGRN--G--------VV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDK---- 254 (509)
Q Consensus 191 i~~Ai~~v~~~--g--------~I--~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~---- 254 (509)
++||+..+.++ + +| ...+|++++|+ ++++|++|+++|.||. |+++++||||+++|+
T Consensus 164 ~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds-~lv~G~v~dk~~~~~~-------m~~~ien~kIll~~~~Le~ 235 (515)
T 3iyg_G 164 ALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDS-CVLRGVMINKDVTHPR-------MRRYIKNPRIVLLDSSLEY 235 (515)
T ss_pred HHHHHHhcccccCCCcccchhheeEEEEecCCCcccc-eEEeeEEEeCCCCCCC-------CcceeeeeEEEEEcccccc
Confidence 99999988632 2 13 34589999999 9999999999999984 678999999999998
Q ss_pred ---------cCCCHHHHHHHHH-----------HHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCc
Q 010494 255 ---------KIKNPKDMFKILD-----------SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERK 314 (509)
Q Consensus 255 ---------~i~~~~~l~~~le-----------~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~ 314 (509)
.|++++++.++++ ++.+.|+++||++++|++.++++|..+ +|+|| ++++
T Consensus 236 ~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~------~I~av-----~~~~ 304 (515)
T 3iyg_G 236 KKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRA------NITAI-----RRVR 304 (515)
T ss_pred cccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHC------Cceee-----ccCC
Confidence 5778888888776 888999999999999999999998765 46776 4888
Q ss_pred cchHHHHHHHhCCeeeecccCccccCCCccccCc-ceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHH
Q 010494 315 SHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT-AIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390 (509)
Q Consensus 315 ~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~-~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 390 (509)
+.+|+|||++|||++++ +++++++++||+ |+.|++. +++|+||+||+++
T Consensus 305 k~~leria~~tGa~ii~-----~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~---------------------- 357 (515)
T 3iyg_G 305 KTDNNRIARACGARIVS-----RPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP---------------------- 357 (515)
T ss_pred HHHHHHHHHHhCCeeec-----cccccChhhcCCcccEEEEEEECCceEEEEeCCCCC----------------------
Confidence 99999999999999999 689999999999 9999864 5689999999866
Q ss_pred HHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHH
Q 010494 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKI 469 (509)
Q Consensus 391 ~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~ 469 (509)
..|||+|||+|+.+++|++|+++|||+++|++++++ +|||||++|++++.+|++++...++.+|+
T Consensus 358 -------------~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~eq~- 423 (515)
T 3iyg_G 358 -------------KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQW- 423 (515)
T ss_pred -------------CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhccCcHHHH-
Confidence 478999999999999999999999999999999775 99999999999999999998888888885
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 470 GAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 470 ~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 424 ~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~ 457 (515)
T 3iyg_G 424 PYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAK 457 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999875
|
| >3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-85 Score=706.13 Aligned_cols=402 Identities=21% Similarity=0.315 Sum_probs=368.8
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhc
Q 010494 36 FNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLA 115 (509)
Q Consensus 36 ~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~ 115 (509)
.| .++|..|+.||..|+++|++||||+||||||+++.|+|+|||||+||+|+|+++||+ |+|++++|++||+++
T Consensus 8 ~g--~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----akll~~~a~~qd~~~ 81 (518)
T 3iyg_D 8 KP--AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPA----ARMLVELSKAQDIEA 81 (518)
T ss_pred hh--HHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHH----HHHHHHHHHHhhhhh
Confidence 46 789999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--cH-HHHHHhhhhcCCc------hh
Q 010494 116 GDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGND------YT 186 (509)
Q Consensus 116 GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~l~~va~ts~~~~------~~ 186 (509)
||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|++ +. .|.++|+||++++ +.
T Consensus 82 GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~vA~tsl~sK~~~~~~~~ 161 (518)
T 3iyg_D 82 GDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSL 161 (518)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCCCChHHHHHHhHhhhccccchhhHHH
Confidence 999999999999999999999999999999999999999999999999999987 44 8999999999875 89
Q ss_pred hhhHHHHHHHhhcc---CCc-----EEEe--cCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC
Q 010494 187 VGKMISDALQQVGR---NGV-----VTIE--KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI 256 (509)
Q Consensus 187 l~~li~~Ai~~v~~---~g~-----I~v~--~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i 256 (509)
|+++++||+.++++ +|. |+++ +|++..|+ ++++|++|+++|.| +||..++||||+++++++
T Consensus 162 i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds-~lv~G~~~dk~~~~--------~mp~~i~n~kIlll~~~L 232 (518)
T 3iyg_D 162 LSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDC-ELVEGLVLTQKVAN--------SGITRVEKAKIGLIQFCL 232 (518)
T ss_pred HHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhh-eEeccEEEeccccc--------CCCccccCceEEEEEeec
Confidence 99999999999985 454 5543 78899998 99999999999987 256678999999998864
Q ss_pred -------------CCHH-----------HHHHHHHHHHhcCCCeEEE-----eccchHHHHHHHHHhcccccceeeeecC
Q 010494 257 -------------KNPK-----------DMFKILDSAVKEKYPIVIV-----AEDIEQQALALLIRNKLRGVLKAAAIKA 307 (509)
Q Consensus 257 -------------~~~~-----------~l~~~le~i~~~~~~lvi~-----~~~i~~~al~~l~~n~~~~~~~i~aV~~ 307 (509)
++++ ++.++++++.+.|+||||+ +++|+++++++|..+ +|+||++
T Consensus 233 e~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~------~I~av~~ 306 (518)
T 3iyg_D 233 SAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKM------KIMVVKD 306 (518)
T ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHc------CcEEEec
Confidence 4454 3567889999999999999 899999999999887 5899997
Q ss_pred cccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---c-CeEEEEecCCChhHHHHHHHHHHHHHh
Q 010494 308 PAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---K-DSTLIVTDGSTRAAVEKRISEIRSLAE 383 (509)
Q Consensus 308 ~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~-~~~~~~~g~~~~~~i~~ri~~l~~~~~ 383 (509)
|++ .+|+|||++|||++++ +++++++++||+|+.|++. + +++++|+||++
T Consensus 307 ~~~-----~~le~ia~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~---------------- 360 (518)
T 3iyg_D 307 IER-----EDIEFICKTIGTKPVA-----HVDQFTADMLGSAELAEEVSLNGSGKLIKITGCAS---------------- 360 (518)
T ss_pred CCH-----HHHHHHHHHhCCEEec-----ccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCC----------------
Confidence 764 5799999999999999 6899999999999999863 4 68899999864
Q ss_pred hhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccC
Q 010494 384 ITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELL 462 (509)
Q Consensus 384 ~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~ 462 (509)
++++|||+|||+|+.+++|++|+++|||+++|+++++| +|||||++|++++.+|++++.+.
T Consensus 361 ------------------~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~ 422 (518)
T 3iyg_D 361 ------------------PGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTL 422 (518)
T ss_pred ------------------CCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEeecCcHHHHHHHHHHHHHhhcC
Confidence 24689999999999999999999999999999999999 99999999999999999998878
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 463 DNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 463 ~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++.+|+ ++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 423 ~g~~q~-~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~ 462 (518)
T 3iyg_D 423 SGMESY-CIRAFADAMEVIPSTLAENAGLNPISTVTELRNR 462 (518)
T ss_pred ChHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 787774 8999999999999999999999999999999883
|
| >3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-86 Score=718.05 Aligned_cols=406 Identities=23% Similarity=0.325 Sum_probs=372.2
Q ss_pred chhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeec-CCCCcEeccchhhhhccccccCcccchHhHHHHHHHH
Q 010494 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQN-KYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (509)
Q Consensus 31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~-~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~ 109 (509)
.+...|| ++||..|+.||+.|+++|++||||+||||||++ +.|+|+|||||+||+|+|+++||. |+|++++|+
T Consensus 9 ~~~~~~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~----Akll~e~a~ 82 (527)
T 3p9d_B 9 QVTEERA--ENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPA----AKVLVNISK 82 (527)
T ss_dssp CEEEEES--HHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHH----HHHHHHHHH
T ss_pred cchhhhh--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHH----HHHHHHHHH
Confidence 4567789 899999999999999999999999999999999 899999999999999999999998 999999999
Q ss_pred hhhhhcCCCcchHHhHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHhcCcccCc-----H-HHHHHhhhhcC
Q 010494 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAA-GMNPVQIARGIEKTSKALLSELKLTSREVED-----H-ELADVAAVSAG 182 (509)
Q Consensus 110 ~~d~~~GDGTTt~viLa~~Ll~~~~~li~~-Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~-~l~~va~ts~~ 182 (509)
+||+++||||||+||||++||+++.+++.+ |+||+.|++||++|++.++++|+++++++++ . .|.++|+||++
T Consensus 83 ~qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~vA~tSl~ 162 (527)
T 3p9d_B 83 VQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLS 162 (527)
T ss_dssp HHHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HhHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHhccc
Confidence 999999999999999999999999999999 9999999999999999999999999999874 4 89999999998
Q ss_pred C------chhhhhHHHHHHHhhccCC---cEEEe--cCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEe
Q 010494 183 N------DYTVGKMISDALQQVGRNG---VVTIE--KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLL 251 (509)
Q Consensus 183 ~------~~~l~~li~~Ai~~v~~~g---~I~v~--~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll 251 (509)
+ ++.|+++++||+.++++++ .|+++ .|+++.|+ ++++|++|+++|.||| +..++||+|++
T Consensus 163 sK~~~~~~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~ds-~lv~G~~~dk~~~~~~--------p~~~~n~kIll 233 (527)
T 3p9d_B 163 SKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDS-FLDEGFILAKKFGNNQ--------PKRIENAKILI 233 (527)
T ss_dssp TSGGGGGHHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSSCC-CEESSCCCSCCCSSSC--------CSCCSSCEEEE
T ss_pred cCcccchHHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCcccc-EEEEeEEEecccCCCC--------CeeeecceEEE
Confidence 6 6899999999999999887 66654 69999998 9999999999999996 23578999999
Q ss_pred eccc--------------CCCHHHH-----------HHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeec
Q 010494 252 VDKK--------------IKNPKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIK 306 (509)
Q Consensus 252 ~d~~--------------i~~~~~l-----------~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~ 306 (509)
++++ |++++++ .++++++.+.|+||||++++|+++++++|..+ +|+||+
T Consensus 234 l~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~------~i~av~ 307 (527)
T 3p9d_B 234 ANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDL------GINSIE 307 (527)
T ss_dssp ECSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHT------CBCCCC
T ss_pred eccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHC------CCEEEe
Confidence 8875 3455655 46788889999999999999999999999888 478998
Q ss_pred CcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHHHHHHh
Q 010494 307 APAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAE 383 (509)
Q Consensus 307 ~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~ 383 (509)
+|++ .+|+|||++|||++++ +++++++++||+|+.|+ ++++++++|.||+++
T Consensus 308 ~~~~-----~dle~ia~~tGa~iv~-----~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~--------------- 362 (527)
T 3p9d_B 308 HADF-----EGVERLALVTGGEVVS-----TFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAG--------------- 362 (527)
T ss_dssp CCHH-----HHHHHHHHHTCCCCCS-----TTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCCS---------------
T ss_pred cCCH-----HHHHHHHHHhCCEEec-----chhhCCHHHCCCCcEEEEEEecceEEEEEECCCCC---------------
Confidence 6654 5799999999999999 68999999999999998 468999999998643
Q ss_pred hhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccC
Q 010494 384 ITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELL 462 (509)
Q Consensus 384 ~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~ 462 (509)
++|||+|||+|+.+++|++|+++||||++|+++++| +|||||++|++++.+|++++...
T Consensus 363 --------------------~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~ 422 (527)
T 3p9d_B 363 --------------------EACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNI 422 (527)
T ss_dssp --------------------CCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCCCEEETTTHHHHHHHHHHHHHHHHH
T ss_pred --------------------CEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999 99999999999999999998777
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 463 DNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 463 ~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++.+|+ |+++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 423 ~g~eq~-~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~ 462 (527)
T 3p9d_B 423 DGKKSL-AVEAFARALRQLPTILADNAGFDSSELVSKLRSS 462 (527)
T ss_dssp CSHHHH-HHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 787774 8999999999999999999999999999999875
|
| >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-84 Score=699.12 Aligned_cols=399 Identities=19% Similarity=0.297 Sum_probs=363.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
++||..|+.||+.|+++|++||||+||||||+++.|+|+|||||+||+|+|+++||+ |+|++++|++||+++||||
T Consensus 10 ~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~~~GDGT 85 (512)
T 3iyg_Q 10 EEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPA----AKMIVMASHMQEQEVGDGT 85 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHH----HHHHHHHHHHhhhhhCCCh
Confidence 689999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhc----CcccCcH-HHHHHhhhhcCC-----chhhhh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLT----SREVEDH-ELADVAAVSAGN-----DYTVGK 189 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~----s~~v~~~-~l~~va~ts~~~-----~~~l~~ 189 (509)
||+||||++||+++.+++++|+||+.|++||++|++.++++|+++ ++++++. .|.++|+||+++ ++.|++
T Consensus 86 TtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~i~~ 165 (512)
T 3iyg_Q 86 NFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAK 165 (512)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCCccchHHHHH
Confidence 999999999999999999999999999999999999999999998 5566666 899999999987 789999
Q ss_pred HHHHHHHhhccC-CcEE-------EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc------
Q 010494 190 MISDALQQVGRN-GVVT-------IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK------ 255 (509)
Q Consensus 190 li~~Ai~~v~~~-g~I~-------v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~------ 255 (509)
+++||+.+++++ +.|. +.+|+++.|+ ++++|++|+++|.+ |++.++||+|++++++
T Consensus 166 livdAv~~V~~~~~~i~v~~I~i~k~~Ggs~~ds-~lv~G~~~dk~~~~---------~~~~~~n~kI~ll~~~le~~~~ 235 (512)
T 3iyg_Q 166 LIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSS-SVLHGMVFKKETEG---------DVTSVKDAKIAVYSCPFDGMIT 235 (512)
T ss_pred HHHHHHHHHhccCCcccHhHeeEeeccCCCcccc-eEEeeEEEecCcCC---------CCcccccCceEEEecccccccc
Confidence 999999999886 4332 3469999888 99999999999864 4557889999998875
Q ss_pred -------CCCHHHHHHH-------HH----HHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccch
Q 010494 256 -------IKNPKDMFKI-------LD----SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (509)
Q Consensus 256 -------i~~~~~l~~~-------le----~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~ 317 (509)
|++++++.++ ++ ++.+.|+||||++++|++.++++|..+ +|+||++|++ .+
T Consensus 236 e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~------~I~av~~~~~-----~d 304 (512)
T 3iyg_Q 236 ETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKY------NIMLVRLNSK-----WD 304 (512)
T ss_pred cccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHC------CeEEEEeCCH-----HH
Confidence 5677887776 54 888999999999999999998877543 6899997764 56
Q ss_pred HHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 010494 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (509)
Q Consensus 318 L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 394 (509)
|+|||++|||++++ +++++++++||+|+.|++. ++++++|++|+.
T Consensus 305 le~ia~~tGa~iis-----~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~--------------------------- 352 (512)
T 3iyg_Q 305 LRRLCKTVGATALP-----RLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKE--------------------------- 352 (512)
T ss_pred HHHHHHHhCCEEec-----ccccCCHHHCCcccEEEEEEeCCeEEEEEEcccC---------------------------
Confidence 99999999999999 6899999999999999874 668999998742
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHH
Q 010494 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (509)
Q Consensus 395 ~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (509)
++++|||+|||+|+.+++|++|+++||||++|+++++| +|||||++|++++.+|++++.+.++.+| +++++
T Consensus 353 -------~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq-~~i~~ 424 (512)
T 3iyg_Q 353 -------DGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQ-YAIKK 424 (512)
T ss_pred -------CCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCcHHHHHHHHHHHHHhccCCcHHH-HHHHH
Confidence 35799999999999999999999999999999999999 9999999999999999999887888887 58999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 474 FKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 474 ~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
|++||+.||++||+|||+|+.+++.+|++.
T Consensus 425 ~a~ALe~ip~~La~NaG~d~~~~v~~l~~~ 454 (512)
T 3iyg_Q 425 FAEAFEAIPRALAENSGVKANEVISKLYAV 454 (512)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999874
|
| >3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-85 Score=712.07 Aligned_cols=416 Identities=21% Similarity=0.289 Sum_probs=376.6
Q ss_pred ceEEecCCCCCCCCCCCCCcccccchhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhh
Q 010494 7 PIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETV 86 (509)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tI 86 (509)
++.++++++++.+ |. ++||..|+.||..|+++|+|||||+||||||+++.|+++|||||+||
T Consensus 10 ~~~~l~~~~~~~~-----------------g~-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TI 71 (568)
T 3p9d_H 10 NAGLFKQGYNSYS-----------------NA-DGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATM 71 (568)
T ss_dssp CCSSCCSSCCBCC-----------------CH-HHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHH
T ss_pred hhhhhhcCccccc-----------------cH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHH
Confidence 3677788887776 42 67999999999999999999999999999999999999999999999
Q ss_pred hccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCc
Q 010494 87 LKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR 166 (509)
Q Consensus 87 lk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~ 166 (509)
||+|+++||+ |+|++++|++||+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++
T Consensus 72 lk~i~v~hP~----Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~ 147 (568)
T 3p9d_H 72 LRELDIVHPA----VKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVV 147 (568)
T ss_dssp TTTCCCCCHH----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHcccCCHH----HHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc----CcH-HHHHHhhhhcCC-----chhhhhHHHHHHHhhccC-----C-------cEEE--ecCCCcccceEEeece
Q 010494 167 EV----EDH-ELADVAAVSAGN-----DYTVGKMISDALQQVGRN-----G-------VVTI--EKGKCTENSLEIVEGM 222 (509)
Q Consensus 167 ~v----~~~-~l~~va~ts~~~-----~~~l~~li~~Ai~~v~~~-----g-------~I~v--~~g~~~~ds~~li~Gi 222 (509)
++ ++. .|.++|+||+++ ++.|+++++||+.+++++ + .|++ .+|++++|| ++++|+
T Consensus 148 ~v~~~~~~~~~l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS-~lv~G~ 226 (568)
T 3p9d_H 148 GEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNS-TVIKGM 226 (568)
T ss_dssp SCCCCCCTTHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGC-EEESSC
T ss_pred ccCCCCCCHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchh-eeeccE
Confidence 76 344 899999999753 589999999999999874 3 4554 469999999 999999
Q ss_pred EEeccCCCCccccCcCCceeEee---ceeeEeeccc-------------CCCHHHHHH-----------HHHHHHhcCCC
Q 010494 223 RFDRGFLSPYFVTDRQKRTVEFH---DGKLLLVDKK-------------IKNPKDMFK-----------ILDSAVKEKYP 275 (509)
Q Consensus 223 ~~~~~~~~p~~~~~~~~~~~~~~---~~kIll~d~~-------------i~~~~~l~~-----------~le~i~~~~~~ 275 (509)
+|+++|. +|+++++ ||||+++|++ |++++++.+ +++++.+.|+|
T Consensus 227 v~dk~~~---------~m~~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~ 297 (568)
T 3p9d_H 227 VFNREPE---------GHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVE 297 (568)
T ss_dssp CBSSCBS---------SGGGSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEeeccc---------CCcEEEecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 9999863 4677888 9999999987 677777765 67889999999
Q ss_pred eEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEe
Q 010494 276 IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT 355 (509)
Q Consensus 276 lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~ 355 (509)
|||++++|++.++++|..+ +|+||++|+ +.+|+|||++|||++++ +++++++++||+|+.|++.
T Consensus 298 vvi~~~~I~~~al~~L~~~------gI~av~~v~-----~~~leria~~tGa~ivs-----~l~~l~~~~LG~a~~v~~~ 361 (568)
T 3p9d_H 298 CIVAGAGVGELALHYLNRY------GILVLKVPS-----KFELRRLCRVCGATPLP-----RLGAPTPEELGLVETVKTM 361 (568)
T ss_dssp EEEECSCCCHHHHHHHHHH------TCEEECCCC-----HHHHHHHHHHHSCCCCS-----SSSCCCGGGCEECSCCCCC
T ss_pred EEEECCCcChHHHHHHHHC------CeEEEecCC-----HHHHHHHHHHhCCEEEe-----ccccCCHHHCCcceEEEEE
Confidence 9999999999999999887 479998664 67899999999999999 6899999999999999754
Q ss_pred ---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHH
Q 010494 356 ---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNAT 432 (509)
Q Consensus 356 ---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~ 432 (509)
+++|++|+||+. |++++|||+|||+|+.+++|.+|+++|||+++
T Consensus 362 ~ig~~~~~~~~g~~~---------------------------------l~~~~~TIllrG~t~~~l~E~er~i~DAL~vv 408 (568)
T 3p9d_H 362 EIGGDRVTVFKQEQG---------------------------------EISRTSTIILRGATQNNLDDIERAIDDGVAAV 408 (568)
T ss_dssp EETTEECBCCCCCSS---------------------------------SCCSSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred EecCceEEEEecCCC---------------------------------CCCCeEEEEECCCcHHHHHHHHHHHHHHHHHH
Confidence 589999999862 23578999999999999999999999999999
Q ss_pred HHHHh--hC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Q 010494 433 KAAIE--EG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHK 504 (509)
Q Consensus 433 ~~al~--~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~ 504 (509)
|++++ ++ +|||||++|++++.+|++++.+.++.+|+ ++++|++||+.||++||+|||+|+.+++.+|++.+
T Consensus 409 r~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~-~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h 482 (568)
T 3p9d_H 409 KGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQL-AIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAH 482 (568)
T ss_dssp HHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHH-HHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHHCC
T ss_pred HHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 99999 65 99999999999999999998888888885 89999999999999999999999999999998864
|
| >3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-84 Score=694.41 Aligned_cols=402 Identities=22% Similarity=0.356 Sum_probs=360.9
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhh
Q 010494 35 YFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL 114 (509)
Q Consensus 35 ~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~ 114 (509)
..| .+|+..|+.||..|+++|+|||||+||||||+++.|+++|||||+||+|+|+++||+ |+|++++|++||++
T Consensus 6 ~~~--~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~----akll~~~a~~qd~e 79 (517)
T 3iyg_Z 6 ARA--QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPT----ASLIAKVATAQDDI 79 (517)
T ss_pred hhH--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHH----HHHHHHHHHHHHHH
Confidence 346 799999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC-cH-HHHHHhhhhcCC------chh
Q 010494 115 AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-DH-ELADVAAVSAGN------DYT 186 (509)
Q Consensus 115 ~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~-~~-~l~~va~ts~~~------~~~ 186 (509)
+||||||+|+||++||+++.+++++|+||+.|++||++|++.++++|++++++++ +. .|.++|+||+++ .+.
T Consensus 80 ~GDGTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~L~~va~tsl~sKi~~~~~d~ 159 (517)
T 3iyg_Z 80 TGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADV 159 (517)
T ss_pred hCCCceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCCCHHHHHHHHHHHhccccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999887 55 899999999876 378
Q ss_pred hhhHHHHHHHhhccCC------c--EEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC--
Q 010494 187 VGKMISDALQQVGRNG------V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI-- 256 (509)
Q Consensus 187 l~~li~~Ai~~v~~~g------~--I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i-- 256 (509)
|+++++||+..+.+.+ . |...+|++..|+ ++++|++|+++|.||+ |+++++||+|+++|+++
T Consensus 160 la~l~vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~~ds-~lv~G~v~dk~~~~p~-------m~~~ien~kIll~~~~le~ 231 (517)
T 3iyg_Z 160 LTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDT-SLIRGLVLDHGARHPD-------MKKRVEDAYILTCNVSLEY 231 (517)
T ss_pred HHHHHHHHhheeccCCCcCChhHheeeeecCCCcccc-ceEeeEEEeccCCCCC-------ccccccCCeEEEecccccc
Confidence 9999999999886532 1 445689999999 9999999999999997 67889999999999875
Q ss_pred -----------CCHHHHHH-----------HHHHHHhcCC--------Ce-EEEeccchHHHHHHHHHhcccccceeeee
Q 010494 257 -----------KNPKDMFK-----------ILDSAVKEKY--------PI-VIVAEDIEQQALALLIRNKLRGVLKAAAI 305 (509)
Q Consensus 257 -----------~~~~~l~~-----------~le~i~~~~~--------~l-vi~~~~i~~~al~~l~~n~~~~~~~i~aV 305 (509)
++++++.+ .++++...+. |+ ||++++|+++++++|..+ +|++|
T Consensus 232 ~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~------gI~~v 305 (517)
T 3iyg_Z 232 EKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKE------GIIAL 305 (517)
T ss_pred cccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHC------CCEEE
Confidence 34555443 3445544443 44 555799999999999876 46777
Q ss_pred cCcccccCccchHHHHHHHhCCeeeecccCccccCCCccc-cCcceEE---EEecCeEEEEecCCChhHHHHHHHHHHHH
Q 010494 306 KAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEV-LGTAIKV---VITKDSTLIVTDGSTRAAVEKRISEIRSL 381 (509)
Q Consensus 306 ~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~-lG~~~~i---~v~~~~~~~~~g~~~~~~i~~ri~~l~~~ 381 (509)
+ ++++.+|+|||++|||++++ +++++++++ ||+|+ | .+++++|+||+||++++
T Consensus 306 ~-----~v~~~~leria~~tGa~iv~-----~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~~------------ 362 (517)
T 3iyg_Z 306 R-----RAKRRNMERLTLACGGIALN-----SLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNPR------------ 362 (517)
T ss_pred E-----ecCHHHHHHHHHHhCCEEec-----chhhCcccccCCcce-EEEEEEcCceEEEEeCCCCch------------
Confidence 6 55688999999999999999 689999999 99999 9 46789999999998763
Q ss_pred HhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhc
Q 010494 382 AEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKE 460 (509)
Q Consensus 382 ~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~ 460 (509)
.+||+|||+|+.+++|.+|+++||||++|+++++| +|||||++|++++.+|++++.
T Consensus 363 -----------------------~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~ 419 (517)
T 3iyg_Z 363 -----------------------SVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKP 419 (517)
T ss_pred -----------------------hheeeecCCcHHHHHHHHHHHHHHHHHHHHHHhcceEecCccHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999 999999999999999999988
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 461 LLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 461 ~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
+.++.+| +++++|++||+.+|+|||+|||+|+.+++.+|++.
T Consensus 420 ~~~g~eq-~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~ 461 (517)
T 3iyg_Z 420 SVKGRAQ-LGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAE 461 (517)
T ss_pred cCCHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7777777 58999999999999999999999999999999875
|
| >3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-84 Score=701.33 Aligned_cols=402 Identities=21% Similarity=0.313 Sum_probs=357.6
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhc
Q 010494 36 FNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLA 115 (509)
Q Consensus 36 ~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~ 115 (509)
.| .+|+..|+.||..|+++|+|||||+||||||+++.|+|+|||||+||||+|+++||+ |+|++++|++||+++
T Consensus 14 ~g--~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~----akll~e~a~~qd~e~ 87 (546)
T 3p9d_F 14 RR--DAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPT----AVLIARAAAAQDEIT 87 (546)
T ss_dssp EH--HHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHH----HHHHHHHHHHHHHHC
T ss_pred hH--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHH----HHHHHHHHHHHHHHh
Confidence 36 899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC----cH-HHHHHhhhhcCC------c
Q 010494 116 GDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE----DH-ELADVAAVSAGN------D 184 (509)
Q Consensus 116 GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~----~~-~l~~va~ts~~~------~ 184 (509)
||||||+||||++||+++.+++++|+||+.|++||++|++.++++|++++++++ +. .|.++|+||+++ .
T Consensus 88 GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi~~~~~ 167 (546)
T 3p9d_F 88 GDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLT 167 (546)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTTHHHHC
T ss_pred CCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHhCCCcchhHH
Confidence 999999999999999999999999999999999999999999999999999885 33 899999999986 4
Q ss_pred hhhhhHHHHHHHhhccC-------CcEE--EecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc
Q 010494 185 YTVGKMISDALQQVGRN-------GVVT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK 255 (509)
Q Consensus 185 ~~l~~li~~Ai~~v~~~-------g~I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~ 255 (509)
+.|+++++||+..+.+. ..|+ ..+|++..|+ ++++|++|+++|.||. |+++++||+|+++|++
T Consensus 168 d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds-~lv~G~v~dk~~~~~~-------m~~~~en~kIll~~~~ 239 (546)
T 3p9d_F 168 EVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDT-TFIKGLVLDHGGRHPD-------MPTRVKNAYVLILNVS 239 (546)
T ss_dssp SSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTC-CCCSSCEESCCCCSSS-------SCSSBCSCCCCEECCC
T ss_pred HHHHHHHHHhheEeecCCCCcccchheEEEEecCCCcccc-EEEeeEEEeccccccc-------CcceecCceEEEecCc
Confidence 78999999999988631 1243 3589999999 9999999999999984 7788999999999986
Q ss_pred C-------------CCHHHHH-----------HHHHHHHh---------cCCC-eEEEeccchHHHHHHHHHhcccccce
Q 010494 256 I-------------KNPKDMF-----------KILDSAVK---------EKYP-IVIVAEDIEQQALALLIRNKLRGVLK 301 (509)
Q Consensus 256 i-------------~~~~~l~-----------~~le~i~~---------~~~~-lvi~~~~i~~~al~~l~~n~~~~~~~ 301 (509)
+ ++++++. ..++++.. .|+| +||++++|+++++++|..|+
T Consensus 240 Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~g------ 313 (546)
T 3p9d_F 240 LEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHN------ 313 (546)
T ss_dssp SSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTT------
T ss_pred ccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCC------
Confidence 4 3333332 23455544 3455 66667899999999998884
Q ss_pred eeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEE---EecCeEEEEecCCChhHHHHHHHHH
Q 010494 302 AAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEI 378 (509)
Q Consensus 302 i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~---v~~~~~~~~~g~~~~~~i~~ri~~l 378 (509)
|++|+ ++++.+|+|||++|||++++ +++++++++||+|+.|+ +++++|+||+||+++
T Consensus 314 I~~vr-----~v~~~~leria~~tGa~ii~-----~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~---------- 373 (546)
T 3p9d_F 314 ILALR-----RAKRRNMERLQLVTGGEAQN-----SVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP---------- 373 (546)
T ss_dssp CEEEC-----CCCHHHHHHHHHTTTBCCCC-----CCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCC----------
T ss_pred CeeEe-----cCCHHHHHHHHHHhCCEEec-----chhhCCHhHCCcccEEEEEEecCceEEEEecCCCC----------
Confidence 57776 56788999999999999999 68999999999999994 678999999999876
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHh
Q 010494 379 RSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEG 457 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~ 457 (509)
..|||+|||+|+.+++|++|+++||||++|+++++| +|||||++|++++.+|++
T Consensus 374 -------------------------~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~ 428 (546)
T 3p9d_F 374 -------------------------KSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRS 428 (546)
T ss_dssp -------------------------SCEEEECCCSCHHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHHHHHHHH
T ss_pred -------------------------ceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHh
Confidence 368999999999999999999999999999999999 999999999999999998
Q ss_pred ---HhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 458 ---IKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 458 ---~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
++...++.+|+ ++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 429 ~~~~~~~~~g~eq~-~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~ 476 (546)
T 3p9d_F 429 ANMNKLGAKGKTKT-GIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDE 476 (546)
T ss_dssp HHTTTTTTTSHHHH-HHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHH
T ss_pred hhhhhhcCchHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 47777787774 8999999999999999999999999999999864
|
| >3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-78 Score=645.57 Aligned_cols=371 Identities=23% Similarity=0.357 Sum_probs=298.8
Q ss_pred EeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHH
Q 010494 69 VLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIAR 148 (509)
Q Consensus 69 ~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~ 148 (509)
||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++||||||+|+||++||+++.+++++|+||+.|++
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~----Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~ 76 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPA----AKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISE 76 (500)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHH----HHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 6888899999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccCc--H-HHHHHhhhhcC------CchhhhhHHHHHHHhhccC--Cc--------EEEe--
Q 010494 149 GIEKTSKALLSELKLTSREVED--H-ELADVAAVSAG------NDYTVGKMISDALQQVGRN--GV--------VTIE-- 207 (509)
Q Consensus 149 G~~~a~~~~l~~L~~~s~~v~~--~-~l~~va~ts~~------~~~~l~~li~~Ai~~v~~~--g~--------I~v~-- 207 (509)
||++|++.++++|++++++++. . .|.++|+||++ +++.|+++++||+.+++++ |. |+++
T Consensus 77 G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~ 156 (500)
T 3aq1_B 77 GYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKR 156 (500)
T ss_dssp HHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEe
Confidence 9999999999999999999874 4 89999998855 4789999999999999876 42 4554
Q ss_pred cCCCcccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeeccc-------------CCCHHHH-----------H
Q 010494 208 KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKDM-----------F 263 (509)
Q Consensus 208 ~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~l-----------~ 263 (509)
+|++++|+ ++++|++|+++|.||+| +++++||||+++|++ |++++++ .
T Consensus 157 ~G~~~~ds-~lv~G~v~dk~~~~~~m-------~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~ 228 (500)
T 3aq1_B 157 AGGSIDDS-ELIDGLVIDKERSHPNM-------PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMR 228 (500)
T ss_dssp ESSCGGGC-EEESEEEESCCCSSTTS-------CSEEEEEEEEEESSCBCC-------------------------CHHH
T ss_pred cCCCccce-EEEeeeEEeecCCCCCC-------cccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHH
Confidence 89999988 99999999999999974 668999999999998 6777775 7
Q ss_pred HHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCc
Q 010494 264 KILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGK 343 (509)
Q Consensus 264 ~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~ 343 (509)
++++++.+.|+||||++++|+++++++|..++ |+||+ ++++.+|+|||++|||++++ +++++++
T Consensus 229 ~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~-----~~~k~~le~ia~~tGa~iis-----~l~~~~~ 292 (500)
T 3aq1_B 229 EMAEKVIASGANVVFCQKGIDDMAQYYIEKAG------IYAVR-----RVKKSDLKRLSKVTGATIIQ-----DLDQITT 292 (500)
T ss_dssp HHHHHHHTTCCSEEEESSCBCHHHHHHHHHTT------CEEEC-----SCCHHHHHHHHHHHCCCCBS-----CTTCCCS
T ss_pred HHHHHHHHhCcCEEEECCCcCHHHHHHHHHCC------EEEEE-----eCCHHHHHHHHHHhCCeEec-----ccccCCH
Confidence 88999999999999999999999999999884 68875 88899999999999999999 6899999
Q ss_pred cccCcceEEEEe---cCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHH
Q 010494 344 EVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKD 420 (509)
Q Consensus 344 ~~lG~~~~i~v~---~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E 420 (509)
++||+|+.|++. +++|++|+||+++ ++|||+|||+|+.+++|
T Consensus 293 ~~LG~a~~v~~~~ig~~~~~~~~g~~~~-----------------------------------~~~TI~lrG~t~~~l~E 337 (500)
T 3aq1_B 293 EDVGTAGLVEEKEVRGGKMTYVTGCQNS-----------------------------------KAVTVLLHGGTEHVVDS 337 (500)
T ss_dssp TTCEEEEEEEEEECSSSEEEEEEEETTC-----------------------------------CCEEEEEEESSHHHHHH
T ss_pred hHCCCceEEEEEEecCeEEEEEECCCCC-----------------------------------ceEEEEecCCcHHHHHH
Confidence 999999999975 8999999998754 58999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhC-ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 010494 421 KQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQ 499 (509)
Q Consensus 421 ~~~~~~dAl~a~~~al~~g-vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~ 499 (509)
++|+++|||+++|+++++| +|||||++|++++.+|++++.+.++.+| +++++|++||+.||++||+|||+|+.+++.+
T Consensus 338 ~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q-~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~ 416 (500)
T 3aq1_B 338 LDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQ-LAVSKFAEALEVIPVALAENAGLDPIDIMVE 416 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHH-HHHHHHHHHTTHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999 9999999999999999999887878777 5899999999999999999999999999999
Q ss_pred Hhcc
Q 010494 500 VSAH 503 (509)
Q Consensus 500 l~~~ 503 (509)
|++.
T Consensus 417 l~~~ 420 (500)
T 3aq1_B 417 LRSQ 420 (500)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
|
| >3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=349.79 Aligned_cols=193 Identities=41% Similarity=0.739 Sum_probs=189.6
Q ss_pred eEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhc
Q 010494 216 LEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNK 295 (509)
Q Consensus 216 ~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~ 295 (509)
+++++||.||+||+||||++++++|..+++||+||++|.+|+++++++|+||.+.+.+.||+|+++||+++||++|+.|+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs~i~~ilP~LE~~~~~~kpLlIIAedvegeaLatLvvNk 81 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNA 81 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEecccccchhhhhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEecCeEEEEecCCChhHHHHHH
Q 010494 296 LRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRI 375 (509)
Q Consensus 296 ~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri 375 (509)
++|.++|+|||+|+||+.|+..|+|||.+|||+++++++|+++++++.++||+|+++.+++|+|++++|.++++.|++|+
T Consensus 82 lrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~T~iv~G~g~~~~I~~Rv 161 (194)
T 3m6c_A 82 IRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRA 161 (194)
T ss_dssp HHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred ccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccEEEEcCCceEEecCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEE
Q 010494 376 SEIRSLAEITEERFQKNILNERIARLSGGIAIL 408 (509)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~l~~r~~~l~~~~~tI 408 (509)
++|+.+++.++|+|+||+|+||+++|+|++|+|
T Consensus 162 ~qIr~~ie~t~s~ydkEKLqERlAkLsGGVAVI 194 (194)
T 3m6c_A 162 KHLRAEIDKSDSDWDREKLGERLAKLAGGVAVI 194 (194)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHBCCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCcEEC
Confidence 999999999999999999999999999999864
|
| >3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=341.62 Aligned_cols=190 Identities=44% Similarity=0.765 Sum_probs=185.8
Q ss_pred EeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhccc
Q 010494 218 IVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLR 297 (509)
Q Consensus 218 li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~ 297 (509)
=.+|+.||+||+||||++++++|..+++||+||++|.+|+++++++|+||.+.+.+.||||+++||+++||++|+.|+++
T Consensus 11 ~~~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs~i~~ilP~LE~v~~~~rpLlIIAEDvegEALatLvvNklr 90 (201)
T 3osx_A 11 GSEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNMR 90 (201)
T ss_dssp -CCCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEECCHHHHHHHHHHHHTSSCCEEEEEEEECHHHHHHHHHHHHH
T ss_pred CccccEecCccCChheeecccCCEEEecCCeEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEeccccchhhhHHHHhhcc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEecCeEEEEecCCChhHHHHHHHH
Q 010494 298 GVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISE 377 (509)
Q Consensus 298 ~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~ 377 (509)
|.++|+|||+|+||+.|+..|+|||.+|||+++++++|+++++++.++||+|++|.+++|+|++++|.++++.|++|+++
T Consensus 91 g~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vtkd~TtIv~G~G~~~~I~~Rv~q 170 (201)
T 3osx_A 91 GIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQ 170 (201)
T ss_dssp TSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEcCCceEEecCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhcCCeEE
Q 010494 378 IRSLAEITEERFQKNILNERIARLSGGIAI 407 (509)
Q Consensus 378 l~~~~~~~~~~~~~~~l~~r~~~l~~~~~t 407 (509)
|+.+++.++|+|+||+|+||+++|+|++|+
T Consensus 171 Ir~qie~t~S~ydkEKLqERLAKLsGGVAV 200 (201)
T 3osx_A 171 IRQQIEESTSDYDREKLQERVAKLAGGVKL 200 (201)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999999999999873
|
| >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=258.46 Aligned_cols=144 Identities=46% Similarity=0.788 Sum_probs=142.0
Q ss_pred ceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccc
Q 010494 221 GMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVL 300 (509)
Q Consensus 221 Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~ 300 (509)
|+.||+||+||||++++++|..+++||+||++|++|+++++++|+||++.+.|.||+|+++||+.+||++|+.|+++|.+
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs~i~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklrg~l 80 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTL 80 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSC
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEecccccCHHHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEecCeEEEEec
Q 010494 301 KAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTD 364 (509)
Q Consensus 301 ~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~~~~~~~~~g 364 (509)
+|+|||+|+||+.|+..|+|||.+|||+++++++|+++++++.++||+|+++.+++++|++++|
T Consensus 81 ~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~TtIv~G 144 (145)
T 1srv_A 81 SVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGG 144 (145)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred eEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
|
| >1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-23 Score=189.34 Aligned_cols=133 Identities=19% Similarity=0.313 Sum_probs=111.9
Q ss_pred cccceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC-------------CCHHHH-----------HHHHH
Q 010494 212 TENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI-------------KNPKDM-----------FKILD 267 (509)
Q Consensus 212 ~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i-------------~~~~~l-----------~~~le 267 (509)
++|| ++++|++|++++.+| +||+.++||||+++++++ ++++++ ..+++
T Consensus 1 ~~dS-~lv~Gvvl~k~~~~~-------~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~ 72 (178)
T 1gml_A 1 MEDS-CVLRGVMINKDVTHP-------RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCE 72 (178)
T ss_dssp --CC-SEEEEEEESCCCSST-------TSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHH
T ss_pred CCCc-EEEEEEEEeccccCC-------CCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 3678 899999999998876 478899999999999864 333333 34578
Q ss_pred HHHhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccC
Q 010494 268 SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLG 347 (509)
Q Consensus 268 ~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG 347 (509)
++.+.|+|+|+++++|++.|+++|..+ +|+||+ ++++.+|+|||++|||++++ ++++++++.||
T Consensus 73 kI~~~g~nVVl~~k~I~d~a~~~l~k~------gI~~vr-----~v~~~dleria~atGa~iv~-----~~~~l~~~~LG 136 (178)
T 1gml_A 73 DIIQLKPDVVITEKGISDLAQHYLMRA------NVTAIR-----RVRKTDNNRIARACGARIVS-----RPEELREDDVG 136 (178)
T ss_dssp HHHTTCCSEEEESSCBCHHHHHHHHHT------TCEEEC-----CCCHHHHHHHHHHHCCCEES-----CGGGCCGGGSB
T ss_pred HHhhcCCcEEEECCcccHHHHHHHHHC------CCEEEe-----cCCHHHHHHHHHHhCCeEeC-----ChhhCChhhhC
Confidence 899999999999999999999999877 468776 77899999999999999999 68999999999
Q ss_pred c-ceEEEE---ecCeEEEEecCCCh
Q 010494 348 T-AIKVVI---TKDSTLIVTDGSTR 368 (509)
Q Consensus 348 ~-~~~i~v---~~~~~~~~~g~~~~ 368 (509)
+ |+.+++ +++++++|+||+++
T Consensus 137 ~~~~~v~~~~ig~~~~~~~~gc~~~ 161 (178)
T 1gml_A 137 TGAGLLEIKKIGDEYFTFITDCKDP 161 (178)
T ss_dssp CCEEEEEEEEETTEEEEEEEEESST
T ss_pred CcccEEEEEEECCeEEEEEECCCCC
Confidence 9 999984 57899999999765
|
| >1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=163.30 Aligned_cols=127 Identities=20% Similarity=0.319 Sum_probs=109.1
Q ss_pred eeceEEeccCCCCccccCcCCceeEeeceeeEeecccC-------------CCHHHH-----------HHHHHHHHhcCC
Q 010494 219 VEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI-------------KNPKDM-----------FKILDSAVKEKY 274 (509)
Q Consensus 219 i~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i-------------~~~~~l-----------~~~le~i~~~~~ 274 (509)
++|++|++++.+| +||+.++||||+++++++ ++++++ ...++++.+.|+
T Consensus 1 i~Gvv~~k~~~~~-------~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~ 73 (159)
T 1ass_A 1 MSGIVIDKEKVHS-------KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA 73 (159)
T ss_dssp CCCEEESCCCSCT-------TSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEecccCCC-------CCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCC
Confidence 5799999998886 478899999999999864 445444 345778999999
Q ss_pred CeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE
Q 010494 275 PIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI 354 (509)
Q Consensus 275 ~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v 354 (509)
|+||++++|++.|+++|..+ +|+||+ ++++.+|+|||++|||++++ ++++++++.||+|+.|++
T Consensus 74 nVVl~~k~I~d~a~~~l~k~------gI~~v~-----~v~~~dleria~atGa~iv~-----~~~~l~~~~LG~~~~v~e 137 (159)
T 1ass_A 74 NVVLCQKGIDDVAQHYLAKE------GIYAVR-----RVKKSDMEKLAKATGAKIVT-----DLDDLTPSVLGEAETVEE 137 (159)
T ss_dssp SEEEESSCBCHHHHHHHHHT------TCEEEC-----SCCHHHHHHHHHHHTCCCBS-----STTSCCTTSCEEEEEEEE
T ss_pred eEEEECCccCHHHHHHHHHC------CCEEEc-----cCCHHHHHHHHHHhCCeeeC-----ccccCCcccCccceEEEE
Confidence 99999999999999999877 468876 77899999999999999999 689999999999999985
Q ss_pred ---ecCeEEEEecCCCh
Q 010494 355 ---TKDSTLIVTDGSTR 368 (509)
Q Consensus 355 ---~~~~~~~~~g~~~~ 368 (509)
+++++++|+||++.
T Consensus 138 ~~ig~~~~~~~~g~~~~ 154 (159)
T 1ass_A 138 RKIGDDRMTFVMGCKNH 154 (159)
T ss_dssp EEETTEEEEEEESCC--
T ss_pred EEECCeEEEEEECCCCc
Confidence 57899999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 509 | ||||
| d1sjpa2 | 184 | c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium | 3e-65 | |
| d1kida_ | 193 | c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta | 6e-65 | |
| d1ioka2 | 176 | c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de | 4e-64 | |
| d1srva_ | 145 | c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus | 8e-55 | |
| d1kp8a1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc | 2e-44 | |
| d1kp8a1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc | 7e-08 | |
| d1we3a1 | 255 | a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The | 9e-37 | |
| d1we3a1 | 255 | a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The | 7e-06 | |
| d1ioka1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par | 9e-36 | |
| d1ioka1 | 252 | a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par | 1e-09 | |
| d1q3qa1 | 258 | a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain | 6e-29 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 1e-22 | |
| d1a6da1 | 245 | a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai | 7e-07 | |
| d1a6db1 | 243 | a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai | 2e-21 | |
| d1sjpa3 | 89 | d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My | 2e-20 | |
| d1sjpa3 | 89 | d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My | 5e-04 | |
| d1sjpa1 | 180 | a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My | 2e-17 | |
| d1we3a3 | 86 | d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th | 7e-16 | |
| d1we3a3 | 86 | d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th | 1e-04 | |
| d1kp8a3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es | 2e-12 | |
| d1kp8a3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es | 2e-09 | |
| d1ioka3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa | 2e-11 | |
| d1ioka3 | 97 | d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa | 2e-09 |
| >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 207 bits (528), Expect = 3e-65
Identities = 81/184 (44%), Positives = 122/184 (66%)
Query: 221 GMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVA 280
GMRFD+G++S YFVTD +++ D +LLV K+ KD+ +L+ + P++I+A
Sbjct: 1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60
Query: 281 EDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDK 340
ED+E +AL+ L+ NK+RG K+ A+KAP FG+R+ L D+AILTGG VI +E+GLTL+
Sbjct: 61 EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 120
Query: 341 AGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIAR 400
A +LG A KVV+TKD T IV A+ R+++IR E ++ + + L ER+A+
Sbjct: 121 ADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAK 180
Query: 401 LSGG 404
L+GG
Sbjct: 181 LAGG 184
|
| >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Escherichia coli [TaxId: 562]
Score = 206 bits (527), Expect = 6e-65
Identities = 85/191 (44%), Positives = 125/191 (65%)
Query: 215 SLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKY 274
EGM+FDRG+LSPYF+ + VE +LL DKKI N ++M +L++ K
Sbjct: 3 VPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGK 62
Query: 275 PIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEM 334
P++I+AED+E +ALA L+ N +RG++K AA+KAP FG+R+ L DIA LTGG VI +E+
Sbjct: 63 PLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEI 122
Query: 335 GLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394
G+ L+KA E LG A +VVI KD+T I+ AA++ R+++IR E + + L
Sbjct: 123 GMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKL 182
Query: 395 NERIARLSGGI 405
ER+A+L+GG+
Sbjct: 183 QERVAKLAGGV 193
|
| >d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Paracoccus denitrificans [TaxId: 266]
Score = 203 bits (519), Expect = 4e-64
Identities = 83/175 (47%), Positives = 118/175 (67%)
Query: 220 EGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIV 279
EGM+FDRG+LSPYFVT+ K E D +LL +KK+ + + M +L+S ++ + P++IV
Sbjct: 1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIV 60
Query: 280 AEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLD 339
AED+E +ALA L+ NKLRG LK AA+KAP FG+R+ L DIAILTGG VI +++G+ L+
Sbjct: 61 AEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLE 120
Query: 340 KAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394
++LG A KV I KD+T IV +A +E R+S+IR E T + + L
Sbjct: 121 NVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKL 175
|
| >d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Thermus thermophilus [TaxId: 274]
Score = 178 bits (454), Expect = 8e-55
Identities = 66/142 (46%), Positives = 96/142 (67%)
Query: 221 GMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVA 280
G +FD+G++SPYFVT+ + D +L+V+KK+ N +++ IL+ + P++I+A
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 281 EDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDK 340
ED+E +ALA L+ NKLRG L AA+KAP FG+R+ L DIA +TGG VI +E+G L+
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120
Query: 341 AGKEVLGTAIKVVITKDSTLIV 362
A +LG A +V ITKD T IV
Sbjct: 121 ATLSMLGRAERVRITKDETTIV 142
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Score = 154 bits (391), Expect = 2e-44
Identities = 86/250 (34%), Positives = 124/250 (49%), Gaps = 24/250 (9%)
Query: 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEI 90
K+V F +D A K+ GV+++A+ V VTLGPKGRNVVL +G P I DG +V +EI
Sbjct: 2 AKDVKFGND--AGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREI 59
Query: 91 ELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGI 150
ELED EN+G ++V++ ++ ND AGDG TT+ +LAQ +I EG+K +AAGMNP+ + RGI
Sbjct: 60 ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGI 119
Query: 151 EKTSKALLSELKLTSREVEDHELADVAAV--------SAGNDYTVG-KMISDALQQVGRN 201
+K + ELK S V + V D VG K+ A++ R
Sbjct: 120 DKAVTVAVEELKALSVGVVAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQ 179
Query: 202 GVVTI-------------EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGK 248
V+ G N+ G D G L P VT + G
Sbjct: 180 IVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 239
Query: 249 LLLVDKKIKN 258
++ + + +
Sbjct: 240 MITTECMVTD 249
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Score = 51.3 bits (122), Expect = 7e-08
Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 12/206 (5%)
Query: 304 AIKAPAFG-ERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIV 362
A K FG + L + +L ++ +G + + ITKD +
Sbjct: 1 AAKDVKFGNDAGVKMLRGVNVLAD--AVKVTLGPKGRN--VVLDKSFGAPTITKDGVSVA 56
Query: 363 T----DGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVEL 418
+ + + E+ S A A ++ G+ + G +
Sbjct: 57 REIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLK 116
Query: 419 KDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAL 478
+ + A+ A+ G+V GGG +L+R+++K+ ++ N +Q +G ++ RA+
Sbjct: 117 RGIDKAVTVAV-EELKALSVGVVAGGGVALIRVASKLADLR--GQNADQNVGIKVALRAM 173
Query: 479 SYPTKLIAKNAGVNGNFVVDQVSAHK 504
P + I N G + V + V
Sbjct: 174 EAPLRQIVLNCGEEPSVVANTVKGGD 199
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Score = 134 bits (337), Expect = 9e-37
Identities = 82/254 (32%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
K + F+ A + L+ GV+ VA V VTLGP+GRNVVL+ K+G P I DG TV KE+E
Sbjct: 2 KILVFDEA--ARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVE 59
Query: 92 LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
LED LENIG +L+++ ++TND+AGDG TT+ +LAQ ++ EG+K +AAG NP+ + RGIE
Sbjct: 60 LEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIE 119
Query: 152 KTSKALLSELKLTSREVED-----------HELADVAAVSAGNDYTVG-KMISDALQQVG 199
K +A + ++K + V + D G K++ AL++
Sbjct: 120 KAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPA 179
Query: 200 RNGVVTIEKG------------KCTENSLEIVEGMRFD---RGFLSPYFVTDRQKRTVEF 244
R K G D G + P VT +
Sbjct: 180 RQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAAS 239
Query: 245 HDGKLLLVDKKIKN 258
+L + +
Sbjct: 240 IGALILTTEAVVAE 253
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Score = 45.3 bits (106), Expect = 7e-06
Identities = 41/208 (19%), Positives = 76/208 (36%), Gaps = 15/208 (7%)
Query: 306 KAPAFGE--RKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVL--GTAIKVVITKDSTLI 361
K F E R++ + + + + +TL G+ V+ ITKD +
Sbjct: 2 KILVFDEAARRA-LERGVNAVA------NAVKVTLGPRGRNVVLEKKFGSPTITKDGVTV 54
Query: 362 VTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERI----ARLSGGIAILQVGAQTVVE 417
+ +E +++ + A + G+ + GA +
Sbjct: 55 AKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLAL 114
Query: 418 LKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRA 477
+ + +E A+ KA +V GG L + ++ GA+I +RA
Sbjct: 115 KRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRA 174
Query: 478 LSYPTKLIAKNAGVNGNFVVDQVSAHKC 505
L P + IA+NAG G+ +V Q+ A
Sbjct: 175 LEEPARQIAENAGYEGSVIVQQILAETK 202
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Score = 131 bits (331), Expect = 9e-36
Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 25/251 (9%)
Query: 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEI 90
KEV FN D A ++ GV+++A+ V VTLGPKGRNVV+ +G P+I DG +V KEI
Sbjct: 2 AKEVKFNSD--ARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEI 59
Query: 91 ELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGI 150
EL D EN+G ++VR+ +RTND AGDG TT+ +LAQ ++ EG+K +AAGMNP+ + RGI
Sbjct: 60 ELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGI 119
Query: 151 EKTSKALLSELKLTSREVEDHEL--------ADVAAVSAGNDYTVG-KMISDALQQ---- 197
+ + ++ +K +R + A +D G +I AL+
Sbjct: 120 DVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQ 179
Query: 198 ----VGRNGVVTIEKGKCTENSLEIVE------GMRFDRGFLSPYFVTDRQKRTVEFHDG 247
G +G V K + + + G F G + P V G
Sbjct: 180 IAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAG 239
Query: 248 KLLLVDKKIKN 258
L+ + I
Sbjct: 240 LLITTEAMIAE 250
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Score = 56.7 bits (136), Expect = 1e-09
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 16/203 (7%)
Query: 304 AIKAPAFG-ERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIV 362
A K F + + L + IL ++ +G + A + ITKD +
Sbjct: 1 AAKEVKFNSDARDRMLKGVNILAD--AVKVTLGPKGRNVVIDKSFGAPR--ITKDGVSVA 56
Query: 363 TDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVE----- 417
+ E +++ R + AI++ G + V
Sbjct: 57 KEIELSDKFENMGAQMV---REVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPM 113
Query: 418 -LKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKR 476
LK + + GIVVGGG +L++ + +EG+ N +Q G I +R
Sbjct: 114 DLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSG--ANSDQDAGIAIIRR 171
Query: 477 ALSYPTKLIAKNAGVNGNFVVDQ 499
AL P + IA+NAGV+G V +
Sbjct: 172 ALEAPMRQIAENAGVDGAVVAGK 194
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Score = 112 bits (282), Expect = 6e-29
Identities = 46/243 (18%), Positives = 95/243 (39%), Gaps = 32/243 (13%)
Query: 42 ATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGV 101
A + ++AE V TLGPKG + +L + G + ND T+L +I+ L++
Sbjct: 16 AQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKID----LQHPAA 71
Query: 102 KLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSEL 161
K++ + + AGDG TT++++A L+ + +++ ++P I +G ++ L
Sbjct: 72 KMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEIL 131
Query: 162 KLTSRE----VEDHELADVAAVSAGNDYTVGKMISDALQQVGR----------------- 200
+ ++A VG + A++
Sbjct: 132 DEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDT 191
Query: 201 ----NGVVTIEKGKCTENSLEIVEGMRFD---RGFLSPYFVTDRQKRTVEFHDGKLLLVD 253
V++ K + +++ EG D +G + P V + ++ +L +D
Sbjct: 192 VEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRID 251
Query: 254 KKI 256
I
Sbjct: 252 DVI 254
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 94.8 bits (235), Expect = 1e-22
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 42 ATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGV 101
A + +A+ V TLGPKG + +L + G I NDG T+LKE+++E P
Sbjct: 7 AQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTA---- 62
Query: 102 KLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSEL 161
K++ + + GDG TT+++L+ L+ + ++ G++P I+ G +
Sbjct: 63 KMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKII 122
Query: 162 KLTSREVEDH-----------ELADVAAVSAGNDYTVGKMISDALQQVGRN 201
+ + LA A G + + + AL+ + R
Sbjct: 123 DEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRT 173
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Score = 48.2 bits (114), Expect = 7e-07
Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 3/185 (1%)
Query: 321 IAILTGGLVIRDEMGLTLDKAGKEVL--GTAIKVVITKDSTLIVTDGSTRAAVEKRISEI 378
+ I D + TL G + + + ++I+ D I+ + K I E+
Sbjct: 9 RNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEV 68
Query: 379 RSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438
+ + L +L G V +L + +A E+
Sbjct: 69 SKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK 128
Query: 439 GIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVD 498
+ GGG L+ ++ + EQ + E F +AL + +A+NAG++ +
Sbjct: 129 SFLWGGGAVEAELAMRLAKYANSVGGREQ-LAIEAFAKALEIIPRTLAENAGIDPINTLI 187
Query: 499 QVSAH 503
++ A
Sbjct: 188 KLKAD 192
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Score = 90.9 bits (225), Expect = 2e-21
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 4/158 (2%)
Query: 42 ATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGV 101
A K+ ++ V +LGP+G + +L + G I NDG T+LKE+++E P
Sbjct: 3 AMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHP----AA 58
Query: 102 KLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSEL 161
K++ + + GDG TT++I+A GL+ + +I ++P I+ G S+ +
Sbjct: 59 KMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVI 118
Query: 162 KLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVG 199
S ++ A QQ+
Sbjct: 119 DEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLA 156
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 83.6 bits (207), Expect = 2e-20
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 167 EVEDHE-LADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFD 225
EVE E +A AA+SAG D ++G +I++A+ +VG GV+T+E+ LE+ E
Sbjct: 1 EVETKEQIAATAAISAG-DQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEVAVIK 59
Query: 226 RGFLSPYFVTDRQKR-TVEFHDGKLLLVD 253
G + + +R+ R + K + +
Sbjct: 60 AGAATEVELKERKHRIEDAVRNAKAAVEE 88
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 37.0 bits (86), Expect = 5e-04
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 405 IAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG 439
+A+++ GA T VELK+++ RIEDA+ KAA+EEG
Sbjct: 55 VAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG 89
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Score = 77.9 bits (191), Expect = 2e-17
Identities = 34/98 (34%), Positives = 57/98 (58%)
Query: 94 DPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKT 153
DP E IG +LV++ +T+D+AGDG TT+ +LAQ L+ EG++ +AAG NP+ + RGIEK
Sbjct: 1 DPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKA 60
Query: 154 SKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMI 191
+ + L ++ V + + A ++ +
Sbjct: 61 VEKVTETLLKGAKIVAGGGVTLLQAAPTLDELKLEGDE 98
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Score = 70.5 bits (173), Expect = 7e-16
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 172 ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSP 231
+ +VA +SA ND VGK+I+DA+++VG+ G++T+E+ K E L+ V
Sbjct: 5 AIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVGVAVIRV---GA 60
Query: 232 YFVTDRQKRTVEFHD 246
T+ +++ F D
Sbjct: 61 ATETELKEKKHRFED 75
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Score = 38.9 bits (91), Expect = 1e-04
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 404 GIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438
G+A+++VGA T ELK+K+ R EDALNAT+AA+EE
Sbjct: 52 GVAVIRVGAATETELKEKKHRFEDALNATRAAVEE 86
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Score = 61.2 bits (148), Expect = 2e-12
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 168 VEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDR 226
D +A V +SA +D TVGK+I++A+ +VG+ GV+T+E G ++ L++VE +
Sbjct: 2 CSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLA 61
Query: 227 GFLSPYFVTDRQKRTVEFHDGKLLLVD 253
G ++ V + VE + K + D
Sbjct: 62 GGVAVIKVGAATE--VEMKEKKARVED 86
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Score = 52.3 bits (125), Expect = 2e-09
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 370 AVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDAL 429
A++K E E + + ER+A+L+GG+A+++VGA T VE+K+K+ R+EDAL
Sbjct: 29 AMDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATEVEMKEKKARVEDAL 88
Query: 430 NATKAAIEE 438
+AT+AA+EE
Sbjct: 89 HATRAAVEE 97
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Score = 58.1 bits (140), Expect = 2e-11
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 168 VEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDR 226
V D E+A V +SA + +G+ I++A+Q+VG GV+T+E+ K E +E+VE +
Sbjct: 2 VNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVERVAKLA 61
Query: 227 GFLSPYFVTDRQKRTVEFHDGKLLLVD 253
G ++ V + +E + K + D
Sbjct: 62 GGVAVIRVGGMTE--IEVKERKDRVDD 86
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.7 bits (126), Expect = 2e-09
Identities = 25/69 (36%), Positives = 49/69 (71%)
Query: 370 AVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDAL 429
A+++ +E E + + + ER+A+L+GG+A+++VG T +E+K+++ R++DAL
Sbjct: 29 AMQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDAL 88
Query: 430 NATKAAIEE 438
NAT+AA++E
Sbjct: 89 NATRAAVQE 97
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 509 | |||
| d1kida_ | 193 | GroEL, A domain {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1sjpa2 | 184 | GroEL, A domain {Mycobacterium tuberculosis, GroEL | 100.0 | |
| d1a6db1 | 243 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1ioka2 | 176 | GroEL, A domain {Paracoccus denitrificans [TaxId: | 100.0 | |
| d1a6da1 | 245 | Thermosome, E domain {Archaeon Thermoplasma acidop | 100.0 | |
| d1kp8a1 | 252 | GroEL, E domain {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1q3qa1 | 258 | Thermosome, E domain {Archaeon Thermococcus sp. ks | 100.0 | |
| d1ioka1 | 252 | GroEL, E domain {Paracoccus denitrificans [TaxId: | 100.0 | |
| d1srva_ | 145 | GroEL, A domain {Thermus thermophilus [TaxId: 274] | 99.98 | |
| d1we3a1 | 255 | GroEL, E domain {Thermus thermophilus [TaxId: 274] | 99.97 | |
| d1gmla_ | 168 | Thermosome, A-domain {Mouse (Mus musculus), gamma | 99.82 | |
| d1a6db2 | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.79 | |
| d1q3qa2 | 153 | Thermosome, A-domain {Archaeon Thermococcus sp. ks | 99.79 | |
| d1assa_ | 152 | Thermosome, A-domain {Archaeon Thermoplasma acidop | 99.78 | |
| d1sjpa1 | 180 | GroEL, E domain {Mycobacterium tuberculosis, GroEL | 99.59 | |
| d1sjpa3 | 89 | GroEL, I domain {Mycobacterium tuberculosis, GroEL | 99.41 | |
| d1we3a3 | 86 | GroEL, I domain {Thermus thermophilus [TaxId: 274] | 99.14 | |
| d1kp8a3 | 97 | GroEL, I domain {Escherichia coli [TaxId: 562]} | 99.14 | |
| d1ioka1 | 252 | GroEL, E domain {Paracoccus denitrificans [TaxId: | 99.13 | |
| d1we3a1 | 255 | GroEL, E domain {Thermus thermophilus [TaxId: 274] | 99.13 | |
| d1ioka3 | 97 | GroEL, I domain {Paracoccus denitrificans [TaxId: | 99.06 | |
| d1kp8a1 | 252 | GroEL, E domain {Escherichia coli [TaxId: 562]} | 98.71 | |
| d1sjpa1 | 180 | GroEL, E domain {Mycobacterium tuberculosis, GroEL | 98.6 | |
| d1q3qa1 | 258 | Thermosome, E domain {Archaeon Thermococcus sp. ks | 98.57 | |
| d1q3qa3 | 107 | Thermosome, I domain {Archaeon Thermococcus sp. ks | 98.36 | |
| d1a6da3 | 105 | Thermosome, I domain {Archaeon Thermoplasma acidop | 98.3 | |
| d1a6db3 | 107 | Thermosome, I domain {Archaeon Thermoplasma acidop | 98.2 | |
| d1ioka3 | 97 | GroEL, I domain {Paracoccus denitrificans [TaxId: | 97.39 | |
| d1kp8a3 | 97 | GroEL, I domain {Escherichia coli [TaxId: 562]} | 96.71 |
| >d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-41 Score=313.41 Aligned_cols=189 Identities=45% Similarity=0.764 Sum_probs=185.4
Q ss_pred EEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcc
Q 010494 217 EIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKL 296 (509)
Q Consensus 217 ~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~ 296 (509)
++.+|+.|++||.||||+++++++..+++||+||++|.+|++++++.|+|+.+.+.+.||||++++|+++||++|+.|+.
T Consensus 5 ~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~ 84 (193)
T d1kida_ 5 RGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM 84 (193)
T ss_dssp SCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHH
T ss_pred cccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEecCeEEEEecCCChhHHHHHHH
Q 010494 297 RGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRIS 376 (509)
Q Consensus 297 ~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~ 376 (509)
+|.++|+||++|+||+.|++.|+|||.+|||++++++.|.++++++.++||+|+++++++++|++++|.++++.|++|+.
T Consensus 85 kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri~ 164 (193)
T d1kida_ 85 RGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVA 164 (193)
T ss_dssp TTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred ccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhcCCe
Q 010494 377 EIRSLAEITEERFQKNILNERIARLSGGI 405 (509)
Q Consensus 377 ~l~~~~~~~~~~~~~~~l~~r~~~l~~~~ 405 (509)
+|+.++++++++|++++|++|+++|+|++
T Consensus 165 ~Lk~~l~~~~~~~~~e~L~eRlakLsGGV 193 (193)
T d1kida_ 165 QIRQQIEEATSDYDREKLQERVAKLAGGV 193 (193)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999874
|
| >d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=100.00 E-value=9.8e-40 Score=301.94 Aligned_cols=184 Identities=44% Similarity=0.771 Sum_probs=181.1
Q ss_pred ceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccc
Q 010494 221 GMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVL 300 (509)
Q Consensus 221 Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~ 300 (509)
|+.|++||.||||+++++++..+++||+||++|.+|++++++.|+|+.+.+.+.||||++++|+++||++|+.|+.+|.+
T Consensus 1 G~~~d~Gy~Sp~Fvt~~~~~~~~~~~p~ili~d~ki~~~~~i~p~Le~~~~~~rPLlIIA~di~~~aL~~Lv~N~~~g~l 80 (184)
T d1sjpa2 1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTF 80 (184)
T ss_dssp EEEESCCBSCGGGCSBTTTTBEEEESCEEEEESSCBCCSTTTHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHTTSS
T ss_pred CCccCcCccCcccccCCCCCEEEecCCEEEEecCccCcHHHHHHHHHHhhccCCcEEEEcchhhHHHHHHHHHHHhcCch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHH
Q 010494 301 KAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRS 380 (509)
Q Consensus 301 ~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~ 380 (509)
+|+||++|+||+.+++.|+|||.+|||++++++.|..+++++.++||+|+++++++++|+++++.++++.|++|+++|+.
T Consensus 81 ~v~aVkaPgfG~~r~~~L~DlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~~~g~~~~I~~Ri~~Lk~ 160 (184)
T d1sjpa2 81 KSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQ 160 (184)
T ss_dssp CCEEEECSSCHHHHHHHHHHHHHHHTCCEEBTTTTBCSSSCCTTTSEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHH
T ss_pred heecccCCCCCcchHHHHHHHHHHhCCEEecccccccccccchhhCCeeeEEEEecCceEEecCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhcCC
Q 010494 381 LAEITEERFQKNILNERIARLSGG 404 (509)
Q Consensus 381 ~~~~~~~~~~~~~l~~r~~~l~~~ 404 (509)
+++.+.++|++++|++||++|+||
T Consensus 161 ~l~~~~~~~e~~~L~eRLAkLsGG 184 (184)
T d1sjpa2 161 EIENSDSDYDREKLQERLAKLAGG 184 (184)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999986
|
| >d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=100.00 E-value=2.8e-37 Score=298.96 Aligned_cols=122 Identities=29% Similarity=0.476 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCcc
Q 010494 41 SATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCT 120 (509)
Q Consensus 41 ~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGTT 120 (509)
++++.|+.++..|+++|++||||+||+|||+++.|+++|||||+||++++.++||. ++++++++++|++++|||||
T Consensus 2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~~~~~~~~~GDGtt 77 (243)
T d1a6db1 2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKTQDSFVGDGTT 77 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHH----HHHHHHHHTCTTCCCTTHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchH----HHHHHHHHHHHHHHhhcCCc
Confidence 68999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCc
Q 010494 121 TSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR 166 (509)
Q Consensus 121 t~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~ 166 (509)
|+++|+++||+++.+++..|+||..|++||+.|.+.+++.|++++.
T Consensus 78 t~~vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~ 123 (243)
T d1a6db1 78 TAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEIST 123 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999987766433
|
| >d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=6.4e-38 Score=287.21 Aligned_cols=176 Identities=47% Similarity=0.771 Sum_probs=130.5
Q ss_pred eceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhccccc
Q 010494 220 EGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGV 299 (509)
Q Consensus 220 ~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~ 299 (509)
+|+.|++||.||||+++++++..+++||+||++|.+|++++++.|+|+.+.+.+.||||++++|+++||++|+.|+++|.
T Consensus 1 EG~~~d~Gy~SpyFvtd~~~~~~~l~np~ILi~d~kI~~~~~i~p~Le~~~~~~~PLlIIA~di~~~aL~~Lv~N~~~g~ 80 (176)
T d1ioka2 1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGG 80 (176)
T ss_dssp CCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC-----------CCCCEEEESCBC---------------
T ss_pred CCcccccCccCccceeCCcCCEEEeeCcEEEEEccccCcHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHHHhcCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEecCeEEEEecCCChhHHHHHHHHHH
Q 010494 300 LKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIR 379 (509)
Q Consensus 300 ~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~ 379 (509)
++|+|||+|+||+.+++.|+|||.+|||++++.+.|.++++++.++||+|+++++++++|++++|.++++.|++|+++|+
T Consensus 81 l~v~aVkaP~fG~~r~~~LeDlA~~tGa~vi~~~~g~~l~~~~~~~LG~a~kv~vtk~~T~ii~g~g~~~~i~~Ri~~Lk 160 (176)
T d1ioka2 81 LKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIR 160 (176)
T ss_dssp --CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEECSSCEEEESCCCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhhCCEEEecccCCChhhCCHHHCceeeEEEEecCceEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHH
Q 010494 380 SLAEITEERFQKNILN 395 (509)
Q Consensus 380 ~~~~~~~~~~~~~~l~ 395 (509)
.++++++++|+|++|+
T Consensus 161 ~~i~~~~s~~~rekLq 176 (176)
T d1ioka2 161 QQIEETTSDYDREKLQ 176 (176)
T ss_dssp HHHTTCCCSSHHHHHH
T ss_pred HHHHHcCCHHHHHhhC
Confidence 9999999999999885
|
| >d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=100.00 E-value=5.7e-36 Score=290.56 Aligned_cols=120 Identities=28% Similarity=0.477 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhhhhhcCCCc
Q 010494 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (509)
Q Consensus 40 ~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~d~~~GDGT 119 (509)
++||..|+.|++.|+++|++||||+||+|||+++.|+++|||||+||++++.++||. ++++++++++|+.++||||
T Consensus 5 ~~a~~~~~~~~~~i~~~v~~tlGP~G~~~~i~~~~g~~~it~Dg~ti~~~~~~~~~~----a~~~~~~~~~~~~~~GDGt 80 (245)
T d1a6da1 5 KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT----AKMIVEVSKAQDTAVGDGT 80 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHH----HHHHHGGGGCTTTCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCCCCeEEeccHhHHhhhcchhhHH----HHHHHHHHHhhHHhhcccc
Confidence 899999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Q 010494 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL 163 (509)
Q Consensus 120 Tt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~ 163 (509)
||+++|+++||+++.+++..|+||..|++||+.|.+.+++.|++
T Consensus 81 tt~ivla~~ll~~~~~ll~~G~~p~~i~~g~~~a~~~a~~~L~~ 124 (245)
T d1a6da1 81 TTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE 124 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHCCCCchhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988864
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-37 Score=303.84 Aligned_cols=226 Identities=39% Similarity=0.591 Sum_probs=186.9
Q ss_pred chhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHh
Q 010494 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR 110 (509)
Q Consensus 31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~ 110 (509)
+|.+.|| +++|+++++|+..|+++|++||||+|++|||.+..|.|.|||||+||++++.++||++++|++++++++.+
T Consensus 2 ak~~~fg--~dar~~ll~gi~~la~~v~~TLGP~g~~~~i~~~~g~~~iTkDg~ti~~~i~~~d~~e~~~a~~~~~~a~~ 79 (252)
T d1kp8a1 2 AKDVKFG--NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASK 79 (252)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred CccccCC--HHHHHHHHHHHHHHHhhHHhccCCCCCeEEEEcCCCCeEEEecchheeecccccchHHHHHHHHHHHHHHh
Confidence 6899999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH---HHHHHhhhh-----cC
Q 010494 111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH---ELADVAAVS-----AG 182 (509)
Q Consensus 111 ~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~---~l~~va~ts-----~~ 182 (509)
+++++||||||+++|++++++++.+++..|+||..|++||+.+.+.+++.|+++++++... .+...+.++ .|
T Consensus 80 ~~~~~GDgttt~~vla~~ll~~~~~~i~~G~~p~~i~~gi~~a~~~v~~~L~~~s~~i~~~~~~~~v~~~~~~~~~k~~n 159 (252)
T d1kp8a1 80 ANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVGVVAGGGVALIRVASKLADLRGQN 159 (252)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCEEETTTHHHHHHHHHTTTCCCSS
T ss_pred hhHHhccccchhHHHHHHHHHHHHHHHHcCCcchhhhhhhhhHHHHHHHHHHhcceeeccCchhhhhHHHHHhhhhcccC
Confidence 9999999999999999999999999999999999999999999999999999999998765 333333332 25
Q ss_pred Cchhhh-hHHHHHHHhh--------ccCCcE---EEe--cCCCcccceEEeeceEEeccCCCCccccCcCCceeEeecee
Q 010494 183 NDYTVG-KMISDALQQV--------GRNGVV---TIE--KGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGK 248 (509)
Q Consensus 183 ~~~~l~-~li~~Ai~~v--------~~~g~I---~v~--~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~k 248 (509)
+|+.++ +++.+|+... +.+|.. .++ +++...+...-..|..|++||++|+|+++...+...+.+|.
T Consensus 160 ~d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~~~v~~~~~~~g~~~~~~~~g~~~~~G~idP~~Vt~~al~~a~~~~~~ 239 (252)
T d1kp8a1 160 ADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGL 239 (252)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHH
T ss_pred ccHHHhHHHHHHHHHHHHHHHHHhhhhcccccceeeeecCCCeeEEEEEEEEEEEEeeccCCcceeccHhhhhheeccce
Confidence 577777 5666776553 333321 111 23222333233448889999999999887655555677778
Q ss_pred eEeecccCCC
Q 010494 249 LLLVDKKIKN 258 (509)
Q Consensus 249 Ill~d~~i~~ 258 (509)
+|.+++.|.+
T Consensus 240 iL~te~~i~~ 249 (252)
T d1kp8a1 240 MITTECMVTD 249 (252)
T ss_dssp HHTEEEEEEE
T ss_pred eEeecccccC
Confidence 8888776544
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=100.00 E-value=4.4e-37 Score=300.70 Aligned_cols=219 Identities=23% Similarity=0.373 Sum_probs=172.8
Q ss_pred hhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHhh
Q 010494 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (509)
Q Consensus 32 k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~~ 111 (509)
+...|| +++|..|+.|+..|+++|++||||+||+|||++++|+++|||||+||+++++++||. |+|++++|++|
T Consensus 8 ~~~~~g--~~a~~~~~~a~~~ia~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~a~~~ 81 (258)
T d1q3qa1 8 TQRYVG--RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA----AKMMVEVAKTQ 81 (258)
T ss_dssp CEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHH----HHHHHHHHHHH
T ss_pred CccccC--HHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEeccHHHHHHHhhhhHHH----HHHHHHHHHHH
Confidence 345678 899999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred hhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCc----ccCcH-HHH------HHhhhh
Q 010494 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR----EVEDH-ELA------DVAAVS 180 (509)
Q Consensus 112 d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~----~v~~~-~l~------~va~ts 180 (509)
++++||||||+++|+++||+++.+++..|+||..|++||+.|.+.+++.|+++++ |..+. .+. ..++..
T Consensus 82 ~~~~GDGttt~~vLa~~ll~~~~~li~~G~~p~~i~~g~~~a~~~~~~~l~~~~~~~~~~~~g~~ei~~a~~l~~~a~~~ 161 (258)
T d1q3qa1 82 DKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQV 161 (258)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHccccchhHHhHHHHHhhhHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999875 33333 232 223332
Q ss_pred cCCchhhhhHHHHHHHhhcc--------CCc--E----EEecCCCcccceEEeeceEEe---ccCCCCccccCcCCceeE
Q 010494 181 AGNDYTVGKMISDALQQVGR--------NGV--V----TIEKGKCTENSLEIVEGMRFD---RGFLSPYFVTDRQKRTVE 243 (509)
Q Consensus 181 ~~~~~~l~~li~~Ai~~v~~--------~g~--I----~v~~g~~~~ds~~li~Gi~~~---~~~~~p~~~~~~~~~~~~ 243 (509)
.+.+....+.+++|+..+.. ++. + ....++..+..+.+.+|..++ +||.+|+|.++..-+...
T Consensus 162 ~~~~~~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~~l~~~~~~~~~~~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~A~ 241 (258)
T d1q3qa1 162 GGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSAS 241 (258)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhccchhhhhhhhcCCccceehhhhhhhcccCCCceEEEEECCEEeEchHcCccccHHHHHHHHHHHH
Confidence 33234444667777776643 211 1 111233445556788999999 899999987653322223
Q ss_pred eeceeeEeecccC
Q 010494 244 FHDGKLLLVDKKI 256 (509)
Q Consensus 244 ~~~~kIll~d~~i 256 (509)
..++.||.+|..|
T Consensus 242 e~a~~IL~iD~iI 254 (258)
T d1q3qa1 242 EAAIMILRIDDVI 254 (258)
T ss_dssp HHHHHHHTCCEEE
T ss_pred HHhCcceeEccEE
Confidence 4456666666544
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=5e-34 Score=278.13 Aligned_cols=203 Identities=40% Similarity=0.649 Sum_probs=172.5
Q ss_pred chhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHh
Q 010494 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR 110 (509)
Q Consensus 31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~ 110 (509)
+|.+.|| +++|+.+++|+..|+++|++||||+|+||||.+..|.++|||||+||++++.+.||++++|++++++++.+
T Consensus 2 ~k~~~fg--~~ar~~~l~gi~~l~~~v~~tlGp~G~~v~i~~~~g~~~ITkDg~TI~~~i~~~~~~e~~~a~l~~~~a~~ 79 (252)
T d1ioka1 2 AKEVKFN--SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASR 79 (252)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCcccCC--HHHHHHHHHHHHHHHHhHHhccCCCcCeEEEEcCCCCceEEcCCceeeeccccCChHHHHHHHHHHHHHHH
Confidence 6899999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH---HHHHHhhh-----hcC
Q 010494 111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH---ELADVAAV-----SAG 182 (509)
Q Consensus 111 ~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~---~l~~va~t-----s~~ 182 (509)
|++++||||||.++|+.+|++++.+++..|+||..+.+|++.+.+.+++.|++++.++... .+.+++.+ +.|
T Consensus 80 ~~~~~gDgttt~~vla~~ll~~g~~~l~~G~~p~~i~~g~~~a~~~v~~~l~~~a~~i~~~g~~al~~~~~~l~~~~~~~ 159 (252)
T d1ioka1 80 TNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGAN 159 (252)
T ss_dssp GGGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCEEETTTHHHHHHGGGGGSCCCSS
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHHcCCCcchhhhhHHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999887643 56665543 334
Q ss_pred Cchhhh-hHH--------HHHHHhhccCCcEEEecCCCcccceEEee------ceEEeccCCCCcccc
Q 010494 183 NDYTVG-KMI--------SDALQQVGRNGVVTIEKGKCTENSLEIVE------GMRFDRGFLSPYFVT 235 (509)
Q Consensus 183 ~~~~l~-~li--------~~Ai~~v~~~g~I~v~~g~~~~ds~~li~------Gi~~~~~~~~p~~~~ 235 (509)
+++.++ +++ .+++..+|.+|.+.+......++....++ |..|++||.+|++++
T Consensus 160 ~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~~~~~~~~~~g~~~~~~~~g~~~~~GiidP~kVt 227 (252)
T d1ioka1 160 SDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVV 227 (252)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCCSTTEEEETTTTEEEEHHHHTCEEEHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEeecccCcCCEEEEceeeeEeeeecccccCcHHHH
Confidence 455555 444 44555678888765433222333334444 777899999998754
|
| >d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: GroEL-like chaperone, apical domain domain: GroEL, A domain species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=1.2e-32 Score=243.62 Aligned_cols=144 Identities=46% Similarity=0.788 Sum_probs=141.8
Q ss_pred ceEEeccCCCCccccCcCCceeEeeceeeEeecccCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHHhcccccc
Q 010494 221 GMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVL 300 (509)
Q Consensus 221 Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~ 300 (509)
|+.|++||.||||++++++|..+++||+||++|.+|++.+++.|+|+.+.+.+.||||++++|+++||++|+.|+++|.+
T Consensus 1 G~~~d~Gy~Sp~Fvtd~~~~~~~l~~p~ILi~d~kI~~~~~ilp~Le~~~~~~rPLlIIA~di~~eaL~~Lv~N~~~g~l 80 (145)
T d1srva_ 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTL 80 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSC
T ss_pred CCccccCccCCccccCcccCEEEecCceeeecccccccHHHHHHHHHHHHHhCCcEEEEeCccCHHHHHHHHHHHhcCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEEecCeEEEEec
Q 010494 301 KAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTD 364 (509)
Q Consensus 301 ~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v~~~~~~~~~g 364 (509)
+|+|||+|+||+.|++.|+|||.+|||++++++.+..+++++.++||+|+++++++++|++++|
T Consensus 81 ~v~aVkaP~fG~~r~~~L~DlAi~tGa~v~~~~~g~~l~~~~~~~LGsa~kv~vtkd~T~ii~G 144 (145)
T d1srva_ 81 SVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGG 144 (145)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEeCCCccHHHHHHHhhhhhhhCCEeeccccCcccccCCHHHCCcccEEEEeCCccEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999987
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=2e-32 Score=267.40 Aligned_cols=224 Identities=38% Similarity=0.580 Sum_probs=187.9
Q ss_pred chhhccCCcHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCcEeccchhhhhccccccCcccchHhHHHHHHHHh
Q 010494 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR 110 (509)
Q Consensus 31 ~k~i~~g~~~~a~~~~~~~~~~la~~v~stlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~~p~~~~ga~ll~~~a~~ 110 (509)
+|.+.|| +++|+.++++++.|+++|++||||+|+||||.++.|.+.|||||.||+++++++++++++|++++++++.+
T Consensus 1 ak~~~f~--~~ar~~l~~gv~~la~av~~tlGP~G~~v~i~~~~g~~~itkdg~ti~~~i~l~d~~e~~~a~~~~~~~~~ 78 (255)
T d1we3a1 1 AKILVFD--EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASK 78 (255)
T ss_dssp CEEEEEH--HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCccccC--HHHHHHHHHhHHHHHHHHhcccCCCcCeEEEEcCCCCceEecchhhhhhhccccchhhhhHHHHHHHhhhh
Confidence 5889999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCc-----H------HHHHHhhh
Q 010494 111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-----H------ELADVAAV 179 (509)
Q Consensus 111 ~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~------~l~~va~t 179 (509)
+++++||||||.++|++++++++..++..|+||..+++|++++.+.+++.|++++.+... . ........
T Consensus 79 ~~~~~gDgttt~~vl~~~~l~~~~~~i~~G~~~~~i~~g~~~a~~~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~~~~~ 158 (255)
T d1we3a1 79 TNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIK 158 (255)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCEEETTTHHHHHHHHHHHHHHT
T ss_pred hHHHhhcchhHHHHHHHHHHHhhhhHHhcCCccchhhhhhhhhhHHHHHHHHHHhhhcceeccchhhhhhhhhhhHhhcc
Confidence 999999999999999999999999999999999999999999999999999999887652 0 23334455
Q ss_pred hcCCchhhh-hHHHHHHHhhccC--------CcEE----EecCCCcccceEEeeceEEe---ccCCCCccccCcCCceeE
Q 010494 180 SAGNDYTVG-KMISDALQQVGRN--------GVVT----IEKGKCTENSLEIVEGMRFD---RGFLSPYFVTDRQKRTVE 243 (509)
Q Consensus 180 s~~~~~~l~-~li~~Ai~~v~~~--------g~I~----v~~g~~~~ds~~li~Gi~~~---~~~~~p~~~~~~~~~~~~ 243 (509)
+.++++.++ +++++|+...... +.+. ..........+.+.+|..+| +||++|||++++..+...
T Consensus 159 ~~~g~~~~g~~iva~Al~~~~~~~~~nag~~~~~~~~~~~~~~~~~~~g~d~~~g~~~D~~e~Giidp~~V~~~a~~~A~ 238 (255)
T d1we3a1 159 KLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAA 238 (255)
T ss_dssp TCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhhhHHHHHhhcccccceeeeeeeecccCCceeEEeeccEEeehhhcCCcCchHhhHHHHHHHH
Confidence 667777777 8899999875432 1110 11222222345778898877 899999998876555556
Q ss_pred eeceeeEeecccC
Q 010494 244 FHDGKLLLVDKKI 256 (509)
Q Consensus 244 ~~~~kIll~d~~i 256 (509)
..++.||.+|+.|
T Consensus 239 ~~a~~iL~~d~~I 251 (255)
T d1we3a1 239 SIGALILTTEAVV 251 (255)
T ss_dssp HHHHHHHTEEEEE
T ss_pred HHhchHhhcchhh
Confidence 7778888877654
|
| >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Mouse (Mus musculus), gamma chain [TaxId: 10090]
Probab=99.82 E-value=3.3e-20 Score=168.69 Aligned_cols=131 Identities=18% Similarity=0.307 Sum_probs=108.5
Q ss_pred cceEEeeceEEeccCCCCccccCcCCceeEeeceeeEeecccC-------------CCHHH-----------HHHHHHHH
Q 010494 214 NSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI-------------KNPKD-----------MFKILDSA 269 (509)
Q Consensus 214 ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i-------------~~~~~-----------l~~~le~i 269 (509)
|| ++++|++|++.+.|+ +|++.++||||+++++++ +++++ +.++++++
T Consensus 1 DS-~li~Gvvi~k~~~~~-------~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I 72 (168)
T d1gmla_ 1 DS-CVLRGVMINKDVTHP-------RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDI 72 (168)
T ss_dssp CC-SEEEEEEESCCCSST-------TSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-EEEEEEEEecccCCc-------CCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 799999999998876 588899999999999864 33333 33457888
Q ss_pred HhcCCCeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcc
Q 010494 270 VKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTA 349 (509)
Q Consensus 270 ~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~ 349 (509)
.+.|+++|+++++|++.++++|..+ +|+|++ ++++.+|++||++|||++++ ++++++++++|+|
T Consensus 73 ~~~g~~vv~~~~~I~~~a~~~L~~~------gI~~~~-----rv~~~dl~ria~~tga~iv~-----si~~l~~~~lG~~ 136 (168)
T d1gmla_ 73 IQLKPDVVITEKGISDLAQHYLMRA------NVTAIR-----RVRKTDNNRIARACGARIVS-----RPEELREDDVGTG 136 (168)
T ss_dssp HTTCCSEEEESSCBCHHHHHHHHHT------TCEEEC-----CCCHHHHHHHHHHHCCCEES-----CGGGCCGGGSBCC
T ss_pred HhcCCceEEEcCCCCHHHHHHHHHC------CCeeec-----cCCHHHHHHHHHHHCCceeC-----chhhcCccccccc
Confidence 9999999999999999999999887 467776 77899999999999999999 6899999999995
Q ss_pred -eEEEE---ecCeEEEEecCCCh
Q 010494 350 -IKVVI---TKDSTLIVTDGSTR 368 (509)
Q Consensus 350 -~~i~v---~~~~~~~~~g~~~~ 368 (509)
+.+++ +++.+++|+||+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
T d1gmla_ 137 AGLLEIKKIGDEYFTFITDCKDP 159 (168)
T ss_dssp EEEEEEEEETTEEEEEEEEESST
T ss_pred ccEEEEEEECCeEEEEEEecCCC
Confidence 55543 46789999998765
|
| >d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=99.79 E-value=1.9e-19 Score=160.83 Aligned_cols=125 Identities=26% Similarity=0.337 Sum_probs=108.8
Q ss_pred ceEEeccCCCCccccCcCCceeEeeceeeEeeccc-------------CCCHHHHH-----------HHHHHHHhcCCCe
Q 010494 221 GMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKDMF-----------KILDSAVKEKYPI 276 (509)
Q Consensus 221 Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~-------------i~~~~~l~-----------~~le~i~~~~~~l 276 (509)
|++|++++.|+ +||+.++||||++++++ +++++++. ..++++.+.|+++
T Consensus 1 Gvv~~k~~~~~-------~mpk~i~~~kIlll~~~Le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nv 73 (152)
T d1a6db2 1 GIIVDKEKVHP-------GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANV 73 (152)
T ss_dssp EEEESCCCSST-------TSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEeccCCCC-------CCCCcccCCcEEEEecccccccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCce
Confidence 88999998876 58899999999999985 35555543 3567888999999
Q ss_pred EEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE--
Q 010494 277 VIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI-- 354 (509)
Q Consensus 277 vi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v-- 354 (509)
|+++++|++.++++|..+ +|+|++ ++++.+|+|||++|||++++ +++++++++||+|+.+++
T Consensus 74 v~~~k~Idd~a~~~l~k~------gI~~v~-----~v~~~dl~rla~~tGa~iv~-----s~~~l~~~~LG~~~~v~~~~ 137 (152)
T d1a6db2 74 VITQKGIDDMAQHYLSRA------GIYAVR-----RVKKSDMDKLAKATGASIVS-----TIDEISSSDLGTAERVEQVK 137 (152)
T ss_dssp EEESSCBCHHHHHHHHHT------TCEEEC-----SCCHHHHHHHHHHHTCCEES-----CGGGCCGGGCEEEEEEEEEE
T ss_pred EEecCCCcHHHHHHHHHc------Ccchhc-----cCCHHHHHHHHHHhCCeeec-----chhhCCcccCcCceEEEEEE
Confidence 999999999999999887 467776 77899999999999999999 699999999999999985
Q ss_pred -ecCeEEEEecCCCh
Q 010494 355 -TKDSTLIVTDGSTR 368 (509)
Q Consensus 355 -~~~~~~~~~g~~~~ 368 (509)
++++++||+||++|
T Consensus 138 ~g~~~~~~~~gc~np 152 (152)
T d1a6db2 138 VGEDYMTFVTGCKNP 152 (152)
T ss_dssp ETTEEEEEEEEESSS
T ss_pred ECCEEEEEEeCCCCC
Confidence 57789999999876
|
| >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=99.79 E-value=2.6e-19 Score=160.18 Aligned_cols=126 Identities=18% Similarity=0.335 Sum_probs=110.0
Q ss_pred eceEEeccCCCCccccCcCCceeEeeceeeEeecccC-------------CCHHHHHH-----------HHHHHHhcCCC
Q 010494 220 EGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI-------------KNPKDMFK-----------ILDSAVKEKYP 275 (509)
Q Consensus 220 ~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i-------------~~~~~l~~-----------~le~i~~~~~~ 275 (509)
+|++|++...|+ +||+.++||||+++++++ ++++++.. +++++.+.|+|
T Consensus 1 kGvv~~k~~~~~-------~mp~~i~n~kIlll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~n 73 (153)
T d1q3qa2 1 RGVVIDKEVVHP-------RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGAN 73 (153)
T ss_dssp SSEEESCCCSST-------TSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEeCCCCCc-------cCCcccCCccEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 599999998876 588999999999999864 55665543 46788899999
Q ss_pred eEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE-
Q 010494 276 IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI- 354 (509)
Q Consensus 276 lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v- 354 (509)
+|+++++|++.++++|..+ +|+|++ ++++.+|++||++|||++++ +++++++++||+|+.+++
T Consensus 74 vvl~~k~I~~~a~~~l~~~------gI~~v~-----~v~~~dl~ria~~tGa~iv~-----si~~l~~~~LG~~~~~~~~ 137 (153)
T d1q3qa2 74 VVFVQKGIDDLAQHYLAKY------GIMAVR-----RVKKSDMEKLAKATGAKIVT-----NVKDLTPEDLGYAEVVEER 137 (153)
T ss_dssp EEEESSCBCHHHHHHHHHT------TCEEEC-----SCCHHHHHHHHHHHCCCCBS-----SGGGCCGGGCEEESEEEEE
T ss_pred ceeecCCCcHHHHHHHHHc------CCceec-----cCCHHHHHHHHHhhCCEEec-----chhhCCcccCeeeEEEEEE
Confidence 9999999999999999887 467776 77899999999999999999 699999999999999975
Q ss_pred --ecCeEEEEecCCCh
Q 010494 355 --TKDSTLIVTDGSTR 368 (509)
Q Consensus 355 --~~~~~~~~~g~~~~ 368 (509)
+++++++|+||++|
T Consensus 138 ~~g~~~~~~~~gc~~P 153 (153)
T d1q3qa2 138 KLAGENMIFVEGCKNP 153 (153)
T ss_dssp EETTEEEEEEECCSSC
T ss_pred EECCeeEEEEeCCCCC
Confidence 57899999999876
|
| >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: GroEL apical domain-like family: Group II chaperonin (CCT, TRIC), apical domain domain: Thermosome, A-domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=99.78 E-value=4.4e-19 Score=158.47 Aligned_cols=125 Identities=21% Similarity=0.323 Sum_probs=108.6
Q ss_pred eeceEEeccCCCCccccCcCCceeEeeceeeEeecccC-------------CCHHHHH-----------HHHHHHHhcCC
Q 010494 219 VEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI-------------KNPKDMF-----------KILDSAVKEKY 274 (509)
Q Consensus 219 i~Gi~~~~~~~~p~~~~~~~~~~~~~~~~kIll~d~~i-------------~~~~~l~-----------~~le~i~~~~~ 274 (509)
++|+++++...|+ +||+.++||+|+++++++ ++++++. .+++++.+.|+
T Consensus 1 i~Gvv~~k~~~~~-------~mp~~i~~~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~ 73 (152)
T d1assa_ 1 MSGIVIDKEKVHS-------KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA 73 (152)
T ss_dssp CCCEEESCCCSCT-------TSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEeCccCCC-------CCCccccCceEEEEecccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5899999998876 588999999999999864 4555443 35778899999
Q ss_pred CeEEEeccchHHHHHHHHHhcccccceeeeecCcccccCccchHHHHHHHhCCeeeecccCccccCCCccccCcceEEEE
Q 010494 275 PIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI 354 (509)
Q Consensus 275 ~lvi~~~~i~~~al~~l~~n~~~~~~~i~aV~~~~~~~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~i~v 354 (509)
++|+++++|++.++++|..+ +|.|++ ++++.+|+|||++|||++++ +++++++++||+|+++++
T Consensus 74 nvvl~~~~I~~~a~~~l~k~------gI~~v~-----~v~~~dl~ria~atGa~iv~-----s~~~l~~~~LG~~~~v~~ 137 (152)
T d1assa_ 74 NVVLCQKGIDDVAQHYLAKE------GIYAVR-----RVKKSDMEKLAKATGAKIVT-----DLDDLTPSVLGEAETVEE 137 (152)
T ss_dssp SEEEESSCBCHHHHHHHHHT------TCEEEC-----SCCHHHHHHHHHHHTCCCBS-----STTSCCTTSCEEEEEEEE
T ss_pred ceEEEeccccHHHHHHHHHc------CCcccc-----CCCHHHHHHHHHHhCCceeC-----CcccCCcccCeeeeEEEE
Confidence 99999999999999999887 467776 78899999999999999998 699999999999999985
Q ss_pred ---ecCeEEEEecCC
Q 010494 355 ---TKDSTLIVTDGS 366 (509)
Q Consensus 355 ---~~~~~~~~~g~~ 366 (509)
+++++++|+||.
T Consensus 138 ~~ig~~~~~~~~GCk 152 (152)
T d1assa_ 138 RKIGDDRMTFVMGCK 152 (152)
T ss_dssp EEETTEEEEEEESCC
T ss_pred EEECCEEEEEEecCC
Confidence 578999999984
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=99.59 E-value=7.3e-16 Score=140.99 Aligned_cols=105 Identities=36% Similarity=0.577 Sum_probs=79.6
Q ss_pred CcccchHhHHHHHHHHhhhhhcCCCcchHHhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCcH--
Q 010494 94 DPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-- 171 (509)
Q Consensus 94 ~p~~~~ga~ll~~~a~~~d~~~GDGTTt~viLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-- 171 (509)
||+||+||+|+++++.++++++||||||+++|++++++++.+++..|+||..|.+||+.|.+.+++.|++.++++...
T Consensus 1 d~~e~~ga~lv~~~a~~~~~~~GDGTTTatVLa~~i~~e~~~~i~~g~~p~~i~~Gi~~A~~~v~~~L~~~a~~v~g~~~ 80 (180)
T d1sjpa1 1 DPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKIVAGGGV 80 (180)
T ss_dssp CHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBEEETTTT
T ss_pred CcchhHhHHHHHHHHHhhHHHcCCCchHHHHHHHHHHHHHHHHhhCCCChHHHHhhHHHHHHHHHHHHHHHHhhhcchhh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred HHHH----HhhhhcCCch-hhhhHHHHHHHhh
Q 010494 172 ELAD----VAAVSAGNDY-TVGKMISDALQQV 198 (509)
Q Consensus 172 ~l~~----va~ts~~~~~-~l~~li~~Ai~~v 198 (509)
.+.+ +.....++++ .-.+++.+|+...
T Consensus 81 ~~l~a~~al~~~~~~~~e~~g~~i~~~Al~~p 112 (180)
T d1sjpa1 81 TLLQAAPTLDELKLEGDEATGANIVKVALEAP 112 (180)
T ss_dssp TTTTTGGGGGGSCCCTHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 2221 2222333443 3445677777763
|
| >d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=99.41 E-value=7e-15 Score=117.11 Aligned_cols=85 Identities=26% Similarity=0.423 Sum_probs=76.3
Q ss_pred CcH-HHHHHhhhhcCCchhhhhHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCc-CCceeEeec
Q 010494 169 EDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDR-QKRTVEFHD 246 (509)
Q Consensus 169 ~~~-~l~~va~ts~~~~~~l~~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~-~~~~~~~~~ 246 (509)
+++ ++.+||++|. +|..++++|++|+.++|.+|.|.++.+.+.++++++++|+.|++||.||||.++. .++...++|
T Consensus 3 ~~~e~i~~VAtISa-~D~~iG~lIa~A~~kVG~dGvItvEe~~~~~t~le~veG~~~d~Gy~Sp~fvtd~k~r~e~~l~~ 81 (89)
T d1sjpa3 3 ETKEQIAATAAISA-GDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEVAVIKAGAATEVELKERKHRIEDAVRN 81 (89)
T ss_dssp CSHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTSCEEEEEESSSSEEEEEESEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhheec-CCHHHHHHHHHHHHhcCCCCceEEEeccccceEEEEEEEEEecCCccCceEEcccHHhhHHHHhC
Confidence 444 7999999998 6999999999999999999999999999999999999999999999999999864 445667999
Q ss_pred eeeEeecc
Q 010494 247 GKLLLVDK 254 (509)
Q Consensus 247 ~kIll~d~ 254 (509)
|+||++|+
T Consensus 82 p~ili~dG 89 (89)
T d1sjpa3 82 AKAAVEEG 89 (89)
T ss_dssp HHHHHHHC
T ss_pred ceEeeecC
Confidence 99998763
|
| >d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Thermus thermophilus [TaxId: 274]
Probab=99.14 E-value=4.8e-12 Score=99.26 Aligned_cols=72 Identities=32% Similarity=0.549 Sum_probs=66.4
Q ss_pred HHHHHhhhhcCCchhhhhHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCceeEeece
Q 010494 172 ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDG 247 (509)
Q Consensus 172 ~l~~va~ts~~~~~~l~~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~~~~~~~~ 247 (509)
+|.+||++|.| |+.+++||++|+.++|++|+|+++.|.+.++++++++|+.|+ .+|||.++.++|..+++||
T Consensus 5 ~i~~VAtISAn-D~~iG~lIAeA~~kVG~dGvItVEes~t~~t~levveG~~~~---~s~~fvtd~~~~~~elenp 76 (86)
T d1we3a3 5 AIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVGVAVIR---VGAATETELKEKKHRFEDA 76 (86)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHTTCTTSEEEEEECSSSSCEEEEECEEEEE---ECCSSHHHHHHHHHHHHHH
T ss_pred HHhhheeeecC-CHHHHHHHHHHHHHcCCCceEEEEecCCCCeEEEEEEeeecc---cceeeeeehhhcEEEEeCc
Confidence 78999999995 999999999999999999999999999999999999999885 5578988888888888887
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=6.4e-12 Score=101.85 Aligned_cols=72 Identities=33% Similarity=0.521 Sum_probs=67.8
Q ss_pred ccCcH-HHHHHhhhhcCCchhhhhHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcC
Q 010494 167 EVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQ 238 (509)
Q Consensus 167 ~v~~~-~l~~va~ts~~~~~~l~~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~ 238 (509)
|++++ +|.+||++|.|+|..++++|++|+.++|.+|.|.++.|.+.++++++++|+.|++||.+|||++++.
T Consensus 1 Pv~~~~~i~~VAtISan~D~~iG~lIa~a~~~vg~dGvitvee~~~~~~~~~ivEG~~~d~G~vS~~fvt~~t 73 (97)
T d1kp8a3 1 PCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAAT 73 (97)
T ss_dssp CCCSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSEEEEECCSSSSCEEEEEHHHHHHHHCEEEEECCCSS
T ss_pred CCCCHHHHhhheeEecCCcHHHHHHHHHHHHHhcccceEEEeccccchhHHHHHHHHHhhcCCccceeecCcc
Confidence 56776 8999999999999999999999999999999999999999999999999999999999999988754
|
| >d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.13 E-value=2.7e-11 Score=116.11 Aligned_cols=188 Identities=23% Similarity=0.322 Sum_probs=136.2
Q ss_pred eecCcccc-cCccchHHHHHHHhCCeeeecccCccccCCCc-cccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHHH
Q 010494 304 AIKAPAFG-ERKSHYLDDIAILTGGLVIRDEMGLTLDKAGK-EVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSL 381 (509)
Q Consensus 304 aV~~~~~~-~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~-~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~ 381 (509)
|+|.|.|| +.|+..|++++.++++ +...+|..-.+.-. ...| ...+++|.+++..+...+..++.++.++..+
T Consensus 1 a~k~~~fg~~ar~~~l~gi~~l~~~--v~~tlGp~G~~v~i~~~~g---~~~ITkDg~TI~~~i~~~~~~e~~~a~l~~~ 75 (252)
T d1ioka1 1 AAKEVKFNSDARDRMLKGVNILADA--VKVTLGPKGRNVVIDKSFG---APRITKDGVSVAKEIELSDKFENMGAQMVRE 75 (252)
T ss_dssp CCEEEEEHHHHHHHHHHHHHHHHHH--HGGGCSTTCCEEEECCSSS---SCEEECCHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHh--HHhccCCCcCeEEEEcCCC---CceEEcCCceeeeccccCChHHHHHHHHHHH
Confidence 56788899 5588999999999865 33333332221111 1223 3457788888888888888888999998888
Q ss_pred HhhhhHHH-----------HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhhCccccCchhHHH
Q 010494 382 AEITEERF-----------QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450 (509)
Q Consensus 382 ~~~~~~~~-----------~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~gvvpGGGa~e~~ 450 (509)
....+++. -.+.+++.+..+. .|.+..++.+-.++..|++.....++..|++||||.+.++
T Consensus 76 ~a~~~~~~~gDgttt~~vla~~ll~~g~~~l~--------~G~~p~~i~~g~~~a~~~v~~~l~~~a~~i~~~g~~al~~ 147 (252)
T d1ioka1 76 VASRTNDEAGDGTTTATVLAQAIVREGLKAVA--------AGMNPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQ 147 (252)
T ss_dssp HHHHGGGGCSTHHHHHHHHHHHHHHHHHHHHH--------TTCCHHHHHHHHHHHHHHHHHHHHTTCBCEEETTTHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH--------cCCCcchhhhhHHHHHHHHHHHHHHhcCCCCCchHHhhHH
Confidence 77764432 2234455443332 4667777777777777777766666777999999999999
Q ss_pred HHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccCC
Q 010494 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAHKCI 506 (509)
Q Consensus 451 ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~~~~ 506 (509)
++..+.... ..+.++.+|++++.+||++|.+++++|+|.|+..++.+.....++
T Consensus 148 ~~~~l~~~~--~~~~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~~~~~~~~ 201 (252)
T d1ioka1 148 GAKVLEGLS--GANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDK 201 (252)
T ss_dssp HGGGGGSCC--CSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCCST
T ss_pred HHHHHHhhh--cccchHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEeecccCcC
Confidence 988776543 336677789999999999999999999999999999998776543
|
| >d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Thermus thermophilus [TaxId: 274]
Probab=99.13 E-value=1.3e-11 Score=118.57 Aligned_cols=144 Identities=29% Similarity=0.417 Sum_probs=112.8
Q ss_pred EEEecCeEEEEecCCChhHHHHHHHHHHHHHhhhhHHHHH-----------HHHHHHHhhhcCCeEEEEeccCChhhHHH
Q 010494 352 VVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQK-----------NILNERIARLSGGIAILQVGAQTVVELKD 420 (509)
Q Consensus 352 i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~~~~~~~~~~~-----------~~l~~r~~~l~~~~~tI~v~G~t~~~l~E 420 (509)
..++++..+++....-+..++.+...+..++..+++++.. ..+++.... |..|.....++++
T Consensus 45 ~~itkdg~ti~~~i~l~d~~e~~~a~~~~~~~~~~~~~~gDgttt~~vl~~~~l~~~~~~-------i~~G~~~~~i~~g 117 (255)
T d1we3a1 45 PTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKN-------VAAGANPLALKRG 117 (255)
T ss_dssp CEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH-------HHTTCCHHHHHHH
T ss_pred ceEecchhhhhhhccccchhhhhHHHHHHHhhhhhHHHhhcchhHHHHHHHHHHHhhhhH-------HhcCCccchhhhh
Confidence 4566777777776666667788888888888887776532 334443332 2224445688899
Q ss_pred HHHHHHHHHHHHHHHHhh-CccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 010494 421 KQLRIEDALNATKAAIEE-GIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQ 499 (509)
Q Consensus 421 ~~~~~~dAl~a~~~al~~-gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~ 499 (509)
.++++++|+++++...+. +++||||+++++++..+..+....++.+| +|++++++||+.||+++++|+|+++..+..+
T Consensus 118 ~~~a~~~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~~~~~~~~g~~~-~g~~iva~Al~~~~~~~~~nag~~~~~~~~~ 196 (255)
T d1we3a1 118 IEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEA-TGAKIVRRALEEPARQIAENAGYEGSVIVQQ 196 (255)
T ss_dssp HHHHHHHHHHHHHHTCBCCCEEETTTHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHTTHHHHHHHHHHTSCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhhcceeccchhhhhhhhhhhHhhccCCChHHH-HHHHHHHHHHhhhHHHHHhhcccccceeeee
Confidence 999999999999997776 59999999999999999988776656555 6999999999999999999999999988887
Q ss_pred Hhcc
Q 010494 500 VSAH 503 (509)
Q Consensus 500 l~~~ 503 (509)
....
T Consensus 197 ~~~~ 200 (255)
T d1we3a1 197 ILAE 200 (255)
T ss_dssp HHHC
T ss_pred eeec
Confidence 6554
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.06 E-value=8.9e-12 Score=100.62 Aligned_cols=74 Identities=32% Similarity=0.459 Sum_probs=68.1
Q ss_pred ccCcH-HHHHHhhhhcCCchhhhhHHHHHHHhhccCCcEEEecCCCcccceEEeeceEEeccCCCCccccCcCCc
Q 010494 167 EVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKR 240 (509)
Q Consensus 167 ~v~~~-~l~~va~ts~~~~~~l~~li~~Ai~~v~~~g~I~v~~g~~~~ds~~li~Gi~~~~~~~~p~~~~~~~~~ 240 (509)
|++++ ++.+||++|.|+|..++++|++|+.++|.+|.|+++.+.++++++++++|+.|++||.+|||.++++.+
T Consensus 1 Pv~~~~~i~~VAtISan~d~~IG~lIa~a~~~Vg~~GvitvEe~~~~~t~~~ivEG~~~~~GyiS~~fv~~~t~~ 75 (97)
T d1ioka3 1 PVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETEVEVVERVAKLAGGVAVIRVGGMTEI 75 (97)
T ss_dssp CCCSTTTTTHHHHHTTTTCHHHHHHHHHHHHHHCTTSCCCCEECSSSCCEEEEEHHHHTTSSCEEEEEECCSSHH
T ss_pred CCCCHHHhheeeeeecCCchHHHHHHHHHHHHhCCCceEEeccccchhhhhhHhhhhhhhhccccccccCCCcee
Confidence 56666 899999999999999999999999999999999999999999999999999999999999998876543
|
| >d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=3.7e-09 Score=100.93 Aligned_cols=182 Identities=20% Similarity=0.345 Sum_probs=122.8
Q ss_pred eecCcccc-cCccchHHHHHHHhCCeeeecccCccccCCCc-cccCcceEEEEecCeEEEEecCCChhHHHHHHHHHHHH
Q 010494 304 AIKAPAFG-ERKSHYLDDIAILTGGLVIRDEMGLTLDKAGK-EVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSL 381 (509)
Q Consensus 304 aV~~~~~~-~~~~~~L~~ia~~tG~~ii~~~~~~~~~~~~~-~~lG~~~~i~v~~~~~~~~~g~~~~~~i~~ri~~l~~~ 381 (509)
|.|.|.|| +.|+..|++++.++++ +...+|..-.+.-. ...| ...+++|.+++...-..+..++.+..++.++
T Consensus 1 ~ak~~~fg~dar~~ll~gi~~la~~--v~~TLGP~g~~~~i~~~~g---~~~iTkDg~ti~~~i~~~d~~e~~~a~~~~~ 75 (252)
T d1kp8a1 1 AAKDVKFGNDAGVKMLRGVNVLADA--VKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDKFENMGAQMVKE 75 (252)
T ss_dssp CCEEEEEHHHHHHHHHHHHHHHHHH--HHTTCSTTCCEEEECCSSS---SCEEECCHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHHhh--HHhccCCCCCeEEEEcCCC---CeEEEecchheeecccccchHHHHHHHHHHH
Confidence 46788999 6688999999998865 33323332111111 1222 3456677777665555566667777777777
Q ss_pred HhhhhHHH-----------HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhh---CccccCchh
Q 010494 382 AEITEERF-----------QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE---GIVVGGGCS 447 (509)
Q Consensus 382 ~~~~~~~~-----------~~~~l~~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~---gvvpGGGa~ 447 (509)
+...+.++ -++.+++-...+ -.|.+.. +.++.++.|...+...++. ++.+|++..
T Consensus 76 ~a~~~~~~~GDgttt~~vla~~ll~~~~~~i--------~~G~~p~---~i~~gi~~a~~~v~~~L~~~s~~i~~~~~~~ 144 (252)
T d1kp8a1 76 VASKANDAAGDGTTTATVLAQAIITEGLKAV--------AAGMNPM---DLKRGIDKAVTVAVEELKALSVGVVAGGGVA 144 (252)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH--------HTTCCHH---HHHHHHHHHHHHHHHHHHHHCBCEEETTTHH
T ss_pred HHHhhhHHhccccchhHHHHHHHHHHHHHHH--------HcCCcch---hhhhhhhhHHHHHHHHHHhcceeeccCchhh
Confidence 66665543 223344433322 3455554 4455666666666666654 799999999
Q ss_pred HHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Q 010494 448 LLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVVDQVSAH 503 (509)
Q Consensus 448 e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii~~l~~~ 503 (509)
.++++..+.... ..+.++.+|.+++.+||+.|.+++++|+|.++..++.++...
T Consensus 145 ~v~~~~~~~~~k--~~n~d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~~~v~~~ 198 (252)
T d1kp8a1 145 LIRVASKLADLR--GQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG 198 (252)
T ss_dssp HHHHHHHTTTCC--CSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHhhhhc--ccCccHHHhHHHHHHHHHHHHHHHHHhhhhcccccceeeeec
Confidence 999988765443 335677789999999999999999999999999999888654
|
| >d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: GroEL chaperone, ATPase domain domain: GroEL, E domain species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]
Probab=98.60 E-value=1.8e-08 Score=91.07 Aligned_cols=82 Identities=33% Similarity=0.522 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHhhC--ccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Q 010494 420 DKQLRIEDALNATKAAIEEG--IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNGNFVV 497 (509)
Q Consensus 420 E~~~~~~dAl~a~~~al~~g--vvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~~~ii 497 (509)
+.++.+++|+..+...++++ .+||||..++++...+.... ..+ +|..|+++|++||+.|+++|++|||+|+..++
T Consensus 52 ~i~~Gi~~A~~~v~~~L~~~a~~v~g~~~~~l~a~~al~~~~--~~~-~e~~g~~i~~~Al~~p~~~I~~NaG~~~~~v~ 128 (180)
T d1sjpa1 52 GLKRGIEKAVEKVTETLLKGAKIVAGGGVTLLQAAPTLDELK--LEG-DEATGANIVKVALEAPLKQIAFNSGLEPGVVA 128 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCBEEETTTTTTTTTGGGGGGSC--CCT-HHHHHHHHHHHHTTHHHHHHHHTTTSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHhhhh--hhh-HHHHHHHHHHHHHHHHHHHHHHhcCCCchhhh
Confidence 77899999999999999886 79999999998777665433 434 45569999999999999999999999999999
Q ss_pred HHHhccc
Q 010494 498 DQVSAHK 504 (509)
Q Consensus 498 ~~l~~~~ 504 (509)
.++++.+
T Consensus 129 ~~~~~~~ 135 (180)
T d1sjpa1 129 EKVRNLP 135 (180)
T ss_dssp HHHHTSC
T ss_pred hhhhccc
Confidence 9987653
|
| >d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GroEL equatorial domain-like superfamily: GroEL equatorial domain-like family: Group II chaperonin (CCT, TRIC), ATPase domain domain: Thermosome, E domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=98.57 E-value=3.7e-08 Score=94.11 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=78.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhCccccCchhHHHHHHHHHhHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q 010494 414 TVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGVNG 493 (509)
Q Consensus 414 t~~~l~E~~~~~~dAl~a~~~al~~gvvpGGGa~e~~ls~~L~~~~~~~~~~~q~~~~~~~~~AL~~~~~~L~~NaG~d~ 493 (509)
...+.+..+.+++++++.++......++||||++|+..+..+..++....+.++. +++.|++||+.||++|++|+|+|+
T Consensus 113 p~~i~~g~~~a~~~~~~~l~~~~~~~~~~~~g~~ei~~a~~l~~~a~~~~~~~~~-a~~~~a~Al~~Ip~~la~N~G~d~ 191 (258)
T d1q3qa1 113 PSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEAL-AIENFADALKIIPKTLAENAGLDT 191 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHTTHHHHHHHHHTTCCH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHhhhcccchHHHH-HHHHHHHhccchhhhhhhhcCCcc
Confidence 3455577888888888888888777899999999999999999999888787775 899999999999999999999999
Q ss_pred HHHHHHHhcc
Q 010494 494 NFVVDQVSAH 503 (509)
Q Consensus 494 ~~ii~~l~~~ 503 (509)
.+++.++++.
T Consensus 192 i~~v~~l~~~ 201 (258)
T d1q3qa1 192 VEMLVKVISE 201 (258)
T ss_dssp HHHHHHHHHH
T ss_pred ceehhhhhhh
Confidence 9999998753
|
| >d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]
Probab=98.36 E-value=2.9e-08 Score=81.81 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=63.0
Q ss_pred CcH-HHHHHhhhhcCC------chhhhhHHHHHHHhhccC---------CcEE--EecCCCcccceEEeeceEEeccCCC
Q 010494 169 EDH-ELADVAAVSAGN------DYTVGKMISDALQQVGRN---------GVVT--IEKGKCTENSLEIVEGMRFDRGFLS 230 (509)
Q Consensus 169 ~~~-~l~~va~ts~~~------~~~l~~li~~Ai~~v~~~---------g~I~--v~~g~~~~ds~~li~Gi~~~~~~~~ 230 (509)
+|. .|.++|+||+++ .+.|++++++|+..+.+. ..|+ +.+||+++|| ++++|++|++.
T Consensus 4 ~D~e~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~Iki~K~~Ggsv~dS-~lv~G~vl~k~--- 79 (107)
T d1q3qa3 4 DDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEES-ELVKAVTILIR--- 79 (107)
T ss_dssp TCHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGC-EEESSEEEEEE---
T ss_pred cHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhcccCCCcccchHHEEEEEecCCChhhC-EEEccEEEEcc---
Confidence 344 799999999976 379999999999998642 1243 4689999999 99999999873
Q ss_pred CccccCcCCceeEeeceeeEeecccC
Q 010494 231 PYFVTDRQKRTVEFHDGKLLLVDKKI 256 (509)
Q Consensus 231 p~~~~~~~~~~~~~~~~kIll~d~~i 256 (509)
| +||..++||+|+++|+++
T Consensus 80 ~-------~mp~~i~n~ki~lld~~l 98 (107)
T d1q3qa3 80 G-------GTEHVIDEVERALEDAVK 98 (107)
T ss_dssp E-------SSHHHHHHHHHHHHHHHH
T ss_pred C-------CCCcccCCcCEeeccCcH
Confidence 2 478889999999999865
|
| >d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]
Probab=98.30 E-value=7.9e-08 Score=78.79 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=60.6
Q ss_pred HHHHHhhhhcCC------chhhhhHHHHHHHhhccC--C-------cEE--EecCCCcccceEEeeceEEeccCCCCccc
Q 010494 172 ELADVAAVSAGN------DYTVGKMISDALQQVGRN--G-------VVT--IEKGKCTENSLEIVEGMRFDRGFLSPYFV 234 (509)
Q Consensus 172 ~l~~va~ts~~~------~~~l~~li~~Ai~~v~~~--g-------~I~--v~~g~~~~ds~~li~Gi~~~~~~~~p~~~ 234 (509)
.|.++|+||+++ .+.|++++++|+..+.++ | .|+ ...|++++|| ++++|+++++. |
T Consensus 5 ~L~~va~Tsl~~K~~~~~~d~ls~l~vdAv~~v~~~~~g~~~~d~~~I~i~k~~Ggs~~dS-~lv~G~vl~k~---~--- 77 (105)
T d1a6da3 5 TLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDT-QFISAVSILIR---G--- 77 (105)
T ss_dssp HHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTC-EEESCEEEEEC---C---
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHhccccCCCceecHHHhhhhhccCCChhhe-eeeeccceecc---C---
Confidence 688999999876 379999999999998542 1 243 4699999999 99999999873 3
Q ss_pred cCcCCceeEeeceeeEeecccC
Q 010494 235 TDRQKRTVEFHDGKLLLVDKKI 256 (509)
Q Consensus 235 ~~~~~~~~~~~~~kIll~d~~i 256 (509)
+||+.++|++|+++|+.+
T Consensus 78 ----~mp~~~~~~kialld~~~ 95 (105)
T d1a6da3 78 ----GTDHVVSEVERALNDAIR 95 (105)
T ss_dssp ----SSSTTHHHHHHHHHHHHH
T ss_pred ----CCCcccCCcCeeEecchh
Confidence 477789999999999754
|
| >d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: Group II chaperonin (CCT, TRIC), intermediate domain domain: Thermosome, I domain species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]
Probab=98.20 E-value=3.8e-08 Score=81.06 Aligned_cols=76 Identities=13% Similarity=0.234 Sum_probs=59.4
Q ss_pred HHHHHhhhhcCC------chhhhhHHHHHHHhhccC--C-------cEE--EecCCCcccceEEeeceEE-----eccCC
Q 010494 172 ELADVAAVSAGN------DYTVGKMISDALQQVGRN--G-------VVT--IEKGKCTENSLEIVEGMRF-----DRGFL 229 (509)
Q Consensus 172 ~l~~va~ts~~~------~~~l~~li~~Ai~~v~~~--g-------~I~--v~~g~~~~ds~~li~Gi~~-----~~~~~ 229 (509)
.|.++|+||+++ .+.|++++++|+..+.++ | .|+ ..+|++++|| ++++|+++ ++...
T Consensus 7 ~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~IkI~k~~Ggs~~dS-~li~G~v~~~~~~~k~~~ 85 (107)
T d1a6db3 7 LLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDT-QLINKAVSILVRGETEHV 85 (107)
T ss_dssp HHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGC-EEESSCEEEEEEESSHHH
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhcccCCCcccCHHHeEEEeecCCChhhc-EEEeccceeeccCCceec
Confidence 788999999876 378999999999998532 1 244 4589999999 99999776 33333
Q ss_pred CCccccCcCCceeEeeceeeEeecccC
Q 010494 230 SPYFVTDRQKRTVEFHDGKLLLVDKKI 256 (509)
Q Consensus 230 ~p~~~~~~~~~~~~~~~~kIll~d~~i 256 (509)
+| +||+.++|+ |+++|+++
T Consensus 86 ~~-------~Mpk~i~n~-I~lld~~L 104 (107)
T d1a6db3 86 VD-------EMERSITDS-LHVVASAL 104 (107)
T ss_dssp HH-------HHHHHHHHH-HHHHHHHH
T ss_pred cC-------CCCccccCc-EEEEecCC
Confidence 33 588999998 99999865
|
| >d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.39 E-value=0.00013 Score=57.85 Aligned_cols=43 Identities=51% Similarity=0.919 Sum_probs=40.3
Q ss_pred HHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhh
Q 010494 396 ERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438 (509)
Q Consensus 396 ~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~ 438 (509)
+++.+++|.++.+.++++++.+++|++.+++|||+++|+|+++
T Consensus 55 EG~~~~~GyiS~~fv~~~t~~E~~ekk~~veDAl~a~raa~~e 97 (97)
T d1ioka3 55 ERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQE 97 (97)
T ss_dssp HHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccCCCceeeeeeccceeecCHHHHHHHhcC
Confidence 5688899999999999999999999999999999999999864
|
| >d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: GroEL-intermediate domain like superfamily: GroEL-intermediate domain like family: GroEL-like chaperone, intermediate domain domain: GroEL, I domain species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00091 Score=52.94 Aligned_cols=43 Identities=60% Similarity=0.977 Sum_probs=39.4
Q ss_pred HHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhh
Q 010494 396 ERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438 (509)
Q Consensus 396 ~r~~~l~~~~~tI~v~G~t~~~l~E~~~~~~dAl~a~~~al~~ 438 (509)
+|+.+++|.++.+.+.++++.+++|.+.+++|+|+++|+|+++
T Consensus 55 EG~~~d~G~vS~~fvt~~te~E~~ekk~~veDaL~a~~aA~~e 97 (97)
T d1kp8a3 55 ERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEE 97 (97)
T ss_dssp HHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCccceeecCcchhhhhhceeEEechHHHHHHHhcC
Confidence 4567778999999999999999999999999999999999874
|