Citrus Sinensis ID: 010517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
Protein Sequence
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccccccHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHcccHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHcccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccEEEEcccccEEEEEEccccccHHHHHHHHHHHcccccccccccHHHHHHHcccccccccHHHcccccccccccccccHHHHccccHHcccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccEEEEEccccEEEEcccccHHHHHHHHHHHHHcccccccEEEcEcEEEEEEEc
Coil and Loop (DISEMBL)
mgqslnsmnqhqqrqsKDELLYQWVIAGDVDAIRALRSQGaslewmdkegktpLIVACMDSGLINVAKTLIELGAninayrpggrggtplhhaakrgLEPTVRLLLSCGanalvrnddchtALGVARIKGHINVVRAIESHICYFCgwlrefygpsflEALAPQLMSRKIWVVVIpcgtanpskplrfelviypslqdvqPRAVIALWKAKidepkfhqpdpsltiyDQATKIRYKFasanegdkhQLQWLDNacrgtsqflpsannhqsaeainangwgnsanaeshngwgaaarteascsgwmdepkkedykgwgdeqakedyngwgasnsepvcgkredgqthntpapilqtstrisgkedyngwgvpnfepifkqsqdvqtlanpapfsqisnrnsssasaapsappipevesgegpirypsvensvadlhlpvledgvsasnvkddgsssscvicweapvegacvpcghmagcmSCLSeikakkgdcpvcrtkINQVIRLYTV
Flexible Loop (DISEMBL)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIdepkfhqpdpslTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKRedgqthntpapilqtstrisgKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEikakkgdcpvcrtkinqvirlytv
Low Complexity Region (SEG)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNsssasaapsappipEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered region (IsUnstruct)
*******************LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGT*********************************************************************************************************DYNGWGVPNFEPIF******************************************************************************SCVICWEAPVEGACV**************************************
Disordered Region (DISOPRED)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLP***************************************************************************************************************************************************************************************************ICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered Region (DISEMBL)
*****************DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESH**************GWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQI*********************SGEGPIRYPSVENSVADLHLPVLEDGVSAS*********SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered Region (DISPRO)
*****NSMNQH*QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEP***************************************************SG**DYNGWGVPNF**************NPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLH******************SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	508	2.2.26 [Sep-21-2011]
Q7XI08	513	Probable E3 ubiquitin-pro	yes	no	0.911	0.902	0.448	1e-121
Q4FE47	462	Putative E3 ubiquitin-pro	no	no	0.488	0.536	0.584	2e-89
Q9FPH0	376	Putative E3 ubiquitin-pro	no	no	0.492	0.664	0.527	2e-76
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.230	0.342	0.35	3e-11
Q9VCA8	4001	Ankyrin repeat and KH dom	yes	no	0.214	0.027	0.369	2e-10
O75179	2603	Ankyrin repeat domain-con	no	no	0.246	0.048	0.338	2e-09
Q99NH0	2603	Ankyrin repeat domain-con	no	no	0.246	0.048	0.338	2e-09
Q505D1	1053	Serine/threonine-protein	no	no	0.220	0.106	0.362	3e-09
Q8IWZ3	2542	Ankyrin repeat and KH dom	no	no	0.259	0.051	0.313	7e-09
O44997	1425	Death-associated protein	yes	no	0.212	0.075	0.333	8e-09

>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/542 (44%), Positives = 318/542 (58%), Gaps = 79/542 (14%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ V  G+ D IRALR+QGA LEW+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 184 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 243

Query: 254 ACRGTSQF---------------------------LPSANNHQSAEAINANGWGNSANAE 286
           AC G  Q                             PS  + + A AINA+    SA AE
Sbjct: 244 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASIL--SAIAE 301

Query: 287 SHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 346
                     T A+               WG+  +    NGWG  ++      +  GQ  
Sbjct: 302 GVPDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV- 344

Query: 347 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 406
               P++ +S+       YNGW VP       QS      +  + F  +  + +  +   
Sbjct: 345 ----PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPV 391

Query: 407 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK------------DDGSS 454
           P+APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D ++
Sbjct: 392 PTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANA 451

Query: 455 S--------SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
           S        +CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY
Sbjct: 452 SNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLY 511

Query: 507 TV 508
            V
Sbjct: 512 AV 513

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana GN=XBAT35 PE=2 SV=1

 Score =  330 bits (845), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/272 (58%), Positives = 192/272 (70%), Gaps = 24/272 (8%)

Query: 13  QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           Q+QSK ELLYQ V  G+ + IRAL   G  LEWMD+EGKTPLI+ACM+S L +VAKTLIE
Sbjct: 3   QQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTLIE 62

Query: 73  LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
           LG+N+NAYRPG   GTPLHHAAKRGLE TV+LLLS GAN LV NDDC T L VAR+KG  
Sbjct: 63  LGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKGFS 122

Query: 133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192
           NVVRAIE HIC F GW+REFYGP+FL+  APQL+SR++WVV++P G+ NP+KP + ELV+
Sbjct: 123 NVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLELVV 182

Query: 193 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT--------------------- 231
           Y SLQD QPR V+ LWKA ++EPK  Q D S+ I D +T                     
Sbjct: 183 YASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNSTIPSRRMKKRRVCASHGRRRPQ 242

Query: 232 ---KIRYKFASANEGDKHQLQWLDNACRGTSQ 260
              + R KFA + EGD  QL+W  +AC+G  Q
Sbjct: 243 VVRQTRLKFAPSTEGDSQQLKWFCDACKGIPQ 274

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FPH0|XB34_ARATH Putative E3 ubiquitin-protein ligase XBAT34 OS=Arabidopsis thaliana GN=XBAT34 PE=2 SV=1

 Score =  286 bits (733), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/275 (52%), Positives = 184/275 (66%), Gaps = 25/275 (9%)

Query: 11  HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTL 70
            QQ QSKDE+L+Q V   +V+ I++L  +GA LE +DK G+TPLI+AC +  L +VAKTL
Sbjct: 3   QQQSQSKDEMLFQEVSNNNVEGIKSLHHEGAGLEGVDKLGRTPLILACTNDDLYDVAKTL 62

Query: 71  IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 130
           +ELG+N+NAYR G  GGTPLHHAAKRGL  TV+LLLS GAN LV +DD  TAL VAR +G
Sbjct: 63  LELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVARDEG 122

Query: 131 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFEL 190
           + NVVRAIESHIC F G +RE+ G S L   APQL+SRK+WVVV+P G+ NP+KPL+ EL
Sbjct: 123 YSNVVRAIESHICLFSGCMREYSGSSLLNLFAPQLLSRKVWVVVVPTGSRNPTKPLKLEL 182

Query: 191 VIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA-------------------- 230
           V+Y S+QD QPR VI LWKA ++EPK  + D S+ I D +                    
Sbjct: 183 VLYDSIQDAQPRMVIPLWKANLEEPKSFRCDDSVMIIDDSRSPKSMRQRRESGFISQARR 242

Query: 231 -----TKIRYKFASANEGDKHQLQWLDNACRGTSQ 260
                 +IR K A+  +GD  Q+ W   AC+G  Q
Sbjct: 243 WAQVDRQIRLKLAAEIKGDMKQMNWFSEACKGVPQ 277

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           +++Q    GDV+ ++A  + G + +  D EG+T L  AC   G +  A+ LI+ GA++NA
Sbjct: 221 IVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFAC-GYGELKCAQVLIDAGASVNA 279

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
                   TPLH+AA  G +  V LLL  GA   ++N D  T + VA++   + VV+ +E
Sbjct: 280 V--DKNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLE 337

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9VCA8|ANKHM_DROME Ankyrin repeat and KH domain-containing protein mask OS=Drosophila melanogaster GN=mask PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD ++ L   GA++E  ++ G TPL+ A   +G + VAK L+E GA IN +    +  
Sbjct: 663 GQVDVVKVLLKHGANVEEQNENGHTPLMEAA-SAGHVEVAKVLLEHGAGINTHSNEFKE- 720

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
           + L  A  +G    VR LL  GA+   + D+ HTAL  A + GH+ V R +
Sbjct: 721 SALTLACYKGHLDMVRFLLQAGADQEHKTDEMHTALMEASMDGHVEVARLL 771

Mediator of receptor tyrosine kinase (RTK) signaling, and may act either downstream of MAPK or transduce signaling through a parallel branch of the RTK pathway.

Drosophila melanogaster (taxid: 7227)

>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens GN=ANKRD17 PE=1 SV=3

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)

Query: 12   QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
            Q   + D  L      G  + ++ L  +GAS+E  DK+G TPLI+A   +G + V + L+
Sbjct: 1078 QTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAAT-AGHVGVVEILL 1136

Query: 72   ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
            + GA+I A     +  TPL  A   G +  V LLL+ GAN   RN   +T L +A   G+
Sbjct: 1137 DNGADIEAQSERTKD-TPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAASGGY 1195

Query: 132  INVVRAI 138
            +N+++ +
Sbjct: 1196 VNIIKIL 1202

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification (By similarity). Target of enterovirus 71 which is the major etiological agent of HFMD (hand, foot and mouth disease).

Homo sapiens (taxid: 9606)

>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)

Query: 12   QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
            Q   + D  L      G  + ++ L  +GAS+E  DK+G TPLI+A   +G + V + L+
Sbjct: 1074 QTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAAT-AGHVGVVEILL 1132

Query: 72   ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
            + GA+I A     +  TPL  A   G +  V LLL+ GAN   RN   +T L +A   G+
Sbjct: 1133 DNGADIEAQSERTKD-TPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAASGGY 1191

Query: 132  INVVRAI 138
            +N+++ +
Sbjct: 1192 VNIIKIL 1198

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification.

Mus musculus (taxid: 10090)

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 17  KDELLYQWV-IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
           KD     W    G ++ ++ L S GA +   DK+  TPL  A   SG+I+V K L++LG 
Sbjct: 172 KDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAA-SSGMISVVKYLLDLGV 230

Query: 76  NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
           ++N   P   G TPLH A   G +  V  L+ CGAN   +N+   T L  A    H
Sbjct: 231 DMN--EPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTH 284

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

>sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 5   LNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI 64
           L+  + + Q  + +  L      G VD ++ L ++GA++E  ++ G TPL+ A   +G +
Sbjct: 293 LHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAA-SAGHV 351

Query: 65  NVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG 124
            VA+ L++ GA IN +    +  + L  A  +G    VR LL  GA+   + D+ HTAL 
Sbjct: 352 EVARVLLDHGAGINTHSNEFKE-SALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALM 410

Query: 125 VARIKGHINVVRAI 138
            A + GH+ V R +
Sbjct: 411 EACMDGHVEVARLL 424

May play a role as a scaffolding protein that may be associated with the abnormal phenotype of leukemia cells. Isoform 2 may possess an antiapoptotic effect and protect cells during normal cell survival through its regulation of caspases.

Homo sapiens (taxid: 9606)

>sp|O44997|DAPK_CAEEL Death-associated protein kinase dapk-1 OS=Caenorhabditis elegans GN=dapk-1 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD ++AL    + ++ ++++GKT LI+A +++G +++A  LI  G +IN       G 
Sbjct: 536 GHVDCVQALLDANSPIDAVEQDGKTALIIA-LENGNVDIASILITNGCDIN--HADHHGD 592

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
           T LH A+K GL   V+ L  C       N +  TAL +A   GH++++R +
Sbjct: 593 TALHIASKHGLLQAVQTLCHCAVTVDSVNANKKTALHLAAHYGHVDIIRVL 643

Negative regulator of barrier repair and innate immune responses to wounding. Appears to act downstream from or in parallel to muscarinic signaling in the regulation of autophagy.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
109676318	499	auxin-regulated protein-like protein [Po	0.889	0.905	0.547	1e-155
225446355	497	PREDICTED: putative E3 ubiquitin-protein	0.889	0.909	0.506	1e-142
147799985	500	hypothetical protein VITISV_013890 [Viti	0.927	0.942	0.481	1e-122
212275778	517	uncharacterized protein LOC100191485 [Ze	0.946	0.930	0.445	1e-121
357122966	515	PREDICTED: probable E3 ubiquitin-protein	0.881	0.869	0.441	1e-119
242048338	516	hypothetical protein SORBIDRAFT_02g01061	0.948	0.934	0.458	1e-119
115471873	513	Os07g0446100 [Oryza sativa Japonica Grou	0.911	0.902	0.448	1e-119
224082824	261	predicted protein [Populus trichocarpa]	0.505	0.984	0.730	1e-109
125600072	493	hypothetical protein OsJ_24077 [Oryza sa	0.872	0.898	0.424	1e-108
125558167	493	hypothetical protein OsI_25836 [Oryza sa	0.875	0.902	0.427	1e-108

>gi|109676318|gb|ABG37641.1| auxin-regulated protein-like protein [Populus trichocarpa]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 304/555 (54%), Positives = 357/555 (64%), Gaps = 103/555 (18%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQSL+SM Q   +QSKDELLYQ  IAG+VDA++AL S+GA LEW+D++GKTPLIVACMD
Sbjct: 1   MGQSLDSMTQ---KQSKDELLYQLAIAGNVDAVKALCSEGAILEWIDRDGKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           SGL NVAK LIE+GAN+NAYRPG   GTPLHHA KRGLE TV+LLLS GANALVRNDDC 
Sbjct: 58  SGLYNVAKVLIEMGANVNAYRPGRHAGTPLHHAVKRGLEQTVKLLLSSGANALVRNDDCQ 117

Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180
           TAL VARIKG+IN+VR IESHICYF GWLREFYGP FL A APQ +SRKIW  VIP G++
Sbjct: 118 TALDVARIKGNINIVRTIESHICYFTGWLREFYGPGFLRAFAPQFLSRKIWAAVIPQGSS 177

Query: 181 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240
           NP  P + ELVIYPS QDVQPR VIALW A+I+EP F++PDP LTI+DQ+TK +YK ASA
Sbjct: 178 NPMTPKKLELVIYPSSQDVQPRTVIALWNAEIEEPNFNRPDPELTIFDQSTKTQYKLASA 237

Query: 241 NEGDKHQLQWLDNACRGTSQFL--------PSA--------------------------- 265
           NEGDK QL WL +AC G  Q +        P+                            
Sbjct: 238 NEGDKQQLHWLYDACSGIPQVMLPPMYGNPPTTVPVVGHHTSAEAVGSAMAIGGGSIQST 297

Query: 266 --------NNHQSAEAINANGWGNSANAESHNGWG---AAARTEASCSGWMDEPKKEDYK 314
                   N HQS+E INANGW +    +SHN WG   A+  +EA  SGWM         
Sbjct: 298 TEDNPLHPNTHQSSEVINANGWEDPVRGDSHNRWGVTVASTHSEARSSGWM--------- 348

Query: 315 GWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFE 374
               E  KED+NG    N  P                        SG +D+         
Sbjct: 349 ---GEAPKEDHNGCAVPNMGP------------------------SGSQDH--------- 372

Query: 375 PIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADL 434
                   VQT  +  P S+ S  N++S  +APSAPPIP+ E   GPI YPS + S+ DL
Sbjct: 373 --------VQTRYDIPPVSETSGGNTASVPSAPSAPPIPDEELDAGPIHYPSFDFSLLDL 424

Query: 435 HLPVLEDGVSA-SNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCP 493
            +P +E G S  S+V   G+SSSC+ICWEAPVEGAC+PCGHMAGCM+CLSEIKAKKG CP
Sbjct: 425 SVPAIELGASVTSDVNKGGTSSSCIICWEAPVEGACIPCGHMAGCMTCLSEIKAKKGVCP 484

Query: 494 VCRTKINQVIRLYTV 508
           +CR+ INQV RLY V
Sbjct: 485 ICRSNINQVTRLYAV 499

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446355|ref|XP_002274072.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 [Vitis vinifera] gi|302143289|emb|CBI21850.3| unnamed protein product [Vitis vinifera]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/553 (50%), Positives = 328/553 (59%), Gaps = 101/553 (18%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQS  SM     RQSKDELLYQ V  G+++AI+AL  +GASLEW D E KTPLIVACMD
Sbjct: 1   MGQSAGSMGG---RQSKDELLYQHVATGNIEAIKALCREGASLEWFDSEAKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           S LI VA+TLI+LGAN+NAYRPG   GTPLHHAAKRGL+ TV+LLLS GANALVRNDD  
Sbjct: 58  SNLIMVAQTLIDLGANVNAYRPGREAGTPLHHAAKRGLDQTVKLLLSKGANALVRNDDGQ 117

Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180
           T+L VARI G+INVVR IE+HIC F GWLRE +GP FL+ALAPQL+SRKIWVV+IP G  
Sbjct: 118 TSLDVARINGYINVVRTIENHICLFSGWLRELHGPGFLKALAPQLLSRKIWVVIIPSGFN 177

Query: 181 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240
           NPSKPLR ELVIY + QD QP  VIAL    I+EPKFHQ DP+L I+D++ K RYK ASA
Sbjct: 178 NPSKPLRLELVIYSNFQDAQPCTVIALGNVNIEEPKFHQSDPALIIFDKSNKTRYKLASA 237

Query: 241 NEGDKHQLQWLDNACRGTSQFLPSANNH--------------------------QSA--- 271
           NEGDK QL+WL NACRG  Q LP+   H                          QSA   
Sbjct: 238 NEGDKQQLRWLYNACRGIPQVLPTPMLHDARPSVPASQTATEAAELAMAVGASIQSAAVD 297

Query: 272 ------------EAINANGWGNSANAESHNGW---GAAARTEASCSGWMDEPKKEDYKGW 316
                       EA + NGWGN  +  SH GW   G    + +S SGW DE K       
Sbjct: 298 QPVLLSSTRLGSEASSTNGWGNPVDNTSHGGWSLDGTPTHSASSSSGWADESK------- 350

Query: 317 GDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPI 376
                + ++NG G   S  +  + +  +T N    ++QTS               N  P+
Sbjct: 351 -----RGEFNGLGVPESRLIRNQTQLNKTQNNIPQVVQTS---------------NTNPV 390

Query: 377 FKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHL 436
                                                     EGP+ YP ++ S  DL +
Sbjct: 391 LASPAPSAPPI--------------------------PEALTEGPVYYPPIDLSPVDLSV 424

Query: 437 PVLE-DGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVC 495
           P  E D    S  KD G SSSCVICWEAP+EGAC+PCGHMAGCM+CL+EIKAKKG CPVC
Sbjct: 425 PAAEYDAAGTSKTKDKGDSSSCVICWEAPIEGACIPCGHMAGCMTCLNEIKAKKGVCPVC 484

Query: 496 RTKINQVIRLYTV 508
           R KI QVI+LY V
Sbjct: 485 RAKIQQVIKLYAV 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799985|emb|CAN72662.1| hypothetical protein VITISV_013890 [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/523 (48%), Positives = 312/523 (59%), Gaps = 52/523 (9%)

Query: 13  QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           Q+QSKDELL+Q V+ G+V+ I+AL  +GA LEW D+EGKTPLIVACM S L NVAKTLIE
Sbjct: 3   QQQSKDELLHQQVVYGNVEGIKALSREGAGLEWTDREGKTPLIVACMFSELFNVAKTLIE 62

Query: 73  LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
           LGAN+NAYRPG   GTPLHHAAK+GLE TV LLLS GANALV NDDC TAL VAR KGH 
Sbjct: 63  LGANVNAYRPGRHAGTPLHHAAKKGLEETVNLLLSHGANALVMNDDCQTALDVARAKGHS 122

Query: 133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192
            VVR IESHIC F GWLREFYGP FLE LAPQ +SRK+WVV++PCG+  P+KP + EL I
Sbjct: 123 RVVRVIESHICLFSGWLREFYGPGFLEVLAPQWVSRKVWVVILPCGSRKPTKPFKLELAI 182

Query: 193 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT--------------------- 231
           Y SLQD QPR  IALWKA +DE KF  PDP++ I D +T                     
Sbjct: 183 YSSLQDAQPRTTIALWKANMDEAKFEDPDPAVIILDNSTISRGRRRRRCYTSREARCKPR 242

Query: 232 ---KIRYKFASANEGDKHQLQWLDNACRGTSQFL-PSANNHQSAEAINANGWGNSANAES 287
              + + K A   + D  QLQW  NAC+G  Q + P A  H +                +
Sbjct: 243 ALRQTQIKLAPEKKSDSQQLQWFCNACKGIPQAMHPPAFLHNAQTPAVP-----PTAPPT 297

Query: 288 HNGWGAAARTEASCSGWMDE-PKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 346
                 A    AS    M E P   D     +  A   +N     NS  +         H
Sbjct: 298 AEDLELAMAINASIQSAMQEGPPLLDSPSSFENGASTSWN-----NSVNI-------TNH 345

Query: 347 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 406
           N P  ++      S K   +   V    P    +Q +Q        + I +    +++A 
Sbjct: 346 NCPDALVAPVAPASSKASSSECVVHEAGPSTNSTQHIQI------ETHIPDIPVQASTA- 398

Query: 407 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSAS-NVKDDGSSSSCVICWEAPV 465
            SAPPI +    +GP++YPS+++S  DL  P  E   +AS   K+ G++SSCVIC +AP+
Sbjct: 399 -SAPPIADEVVDDGPVQYPSIDSSPVDLTSPAFETSAAASEQSKEGGAASSCVICLDAPI 457

Query: 466 EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 508
           EGAC+PCGHMAGCMSCL+EIKAKK  CPVCR KI+QV++LY+V
Sbjct: 458 EGACIPCGHMAGCMSCLNEIKAKKWGCPVCRAKIDQVVKLYSV 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212275778|ref|NP_001130389.1| uncharacterized protein LOC100191485 [Zea mays] gi|194689006|gb|ACF78587.1| unknown [Zea mays] gi|195647730|gb|ACG43333.1| protein binding protein [Zea mays] gi|224031463|gb|ACN34807.1| unknown [Zea mays] gi|414884433|tpg|DAA60447.1| TPA: putative RING zinc finger and ankyrin repeat containing protein [Zea mays]

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/528 (44%), Positives = 311/528 (58%), Gaps = 47/528 (8%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+VD IR LR QGA LEW+DKEGKTPL++ACM   L +VAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNVDGIRTLRGQGAGLEWIDKEGKTPLMLACMRPDLFDVAKVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GL+ TV LLLS GAN  + NDDC+TAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSHCGTALHHAAKKGLQQTVHLLLSHGANPFIPNDDCNTALELAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  +C FCGW+RE Y P+FL+A+APQ M+RKIW VV+P     P++PL+ E+ IY
Sbjct: 124 VVRAIEGRLCLFCGWMRENYAPAFLDAIAPQFMTRKIWAVVLPREVRTPTRPLKLEIAIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +PR+V+ LWK +I++PK +Q DPS+ I+D+ TK RYK   A EGDK QLQW  N
Sbjct: 184 PELQASKPRSVLKLWKCQIEQPKLNQADPSIIIFDKGTKTRYKILPAYEGDKQQLQWFYN 243

Query: 254 ACRGTSQFL----------PSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSG 303
           AC G +Q L          P  N   +  ++  +     +  +        A  +++ + 
Sbjct: 244 ACCGMAQVLNTAPVAPANLPMPNPAPAISSVAPSEQSAPSKEDVELAMAINASIQSAIAE 303

Query: 304 WMDEPKKE------DYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTST 357
            +  P  +      +  GW    +   +NGWG   +      +  GQ+        Q   
Sbjct: 304 GVSVPNVQPNASTPNNNGWAAPPSN-SHNGWGPPATP--APSKTSGQS--------QVRV 352

Query: 358 RISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVES 417
                  YNGW VP        S+  QT  NP     +  + +  A   P+APP  E   
Sbjct: 353 DAPSSSTYNGWDVPGTSSSQSSSKPHQTQTNP---PVLIPQEALQALPTPTAPPFAEETF 409

Query: 418 GEGPIRYPSVENSVADLHLPVLEDGVSAS---------------NVKDDGS--SSSCVIC 460
             GP+ YPS++++  D+ +P    G S +               +  D G   S +CVIC
Sbjct: 410 YNGPVHYPSIDSTPVDVTMPATTGGGSTTVIATAAPTEQLENEADASDSGKTPSGTCVIC 469

Query: 461 WEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 508
            +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR  INQV+RLY V
Sbjct: 470 LDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRATINQVVRLYAV 517

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122966|ref|XP_003563184.1| PREDICTED: probable E3 ubiquitin-protein ligase XBOS34-like [Brachypodium distachyon]

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/559 (44%), Positives = 315/559 (56%), Gaps = 111/559 (19%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+++ IR LR+QGA LEW+DKEGKTPL+VA M   L+NVAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNIEGIRTLRTQGAGLEWIDKEGKTPLMVASMRPDLLNVAKVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAKRGLE TV LLLS GAN  + NDDC+TAL +AR KGH+ 
Sbjct: 64  GANVNAYRPGSHAGTALHHAAKRGLELTVHLLLSHGANPFITNDDCNTALDLAREKGHVK 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ M+RKIW V++P    NP++P++ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFMTRKIWAVILPREARNPARPVKLELAIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +PRAV+ LWK++I+EPK++Q DPS+ I+D+ TK RYK  SA EGDK Q++   +
Sbjct: 184 PELQASKPRAVVKLWKSQIEEPKYNQADPSMAIFDKVTKTRYKILSAFEGDKQQIRSFYS 243

Query: 254 ACRGTSQFL-----------------------------PSANNHQSAEAINA-------- 276
           AC G +Q +                             PS  + + A AINA        
Sbjct: 244 ACCGMAQVVSMVPARPANAPVPNPLPINTSSTPSVLSTPSKEDVELAMAINASIQSAIAE 303

Query: 277 --------------NGWGNSANAESHNGWG---AAARTEASCSGWMDEPKKEDYKGWGDE 319
                         NGWGN+AN+ S +GWG   A A ++ S  G  D P    Y GW   
Sbjct: 304 GVPNIEPTTSTINTNGWGNTANS-SLSGWGPPDAHAPSKISGQGQADAPSSSTYNGW--- 359

Query: 320 QAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQ 379
               D  G  AS S     K +   +   P  +  T                        
Sbjct: 360 ----DIPGTSASQSSSTPNKSQTNPSVVIPQEVPPTV----------------------- 392

Query: 380 SQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVL 439
                    P P +  +    ++   A       E     GPI+YPS++ +  D+ +P  
Sbjct: 393 ---------PTPTALPAIPTPTAPPLA-------EGTFYNGPIQYPSIDFTPVDVTMPTA 436

Query: 440 EDGVSASNVK---DDGSSSS-------CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK 489
           E  V  ++ K   +D  +SS       CVIC +APVEGAC+PCGHMAGCMSCL +I++KK
Sbjct: 437 EGAVVVNSSKPGENDADTSSGNTPSGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKK 496

Query: 490 GDCPVCRTKINQVIRLYTV 508
             CP+CR KINQ+IRLY V
Sbjct: 497 WGCPICRAKINQIIRLYAV 515

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242048338|ref|XP_002461915.1| hypothetical protein SORBIDRAFT_02g010610 [Sorghum bicolor] gi|241925292|gb|EER98436.1| hypothetical protein SORBIDRAFT_02g010610 [Sorghum bicolor]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/526 (45%), Positives = 310/526 (58%), Gaps = 44/526 (8%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+VD IR LR QG  LEW+DKEGKTPL+VACM   L +VAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNVDGIRTLRGQGVGLEWIDKEGKTPLMVACMRPDLFDVAKVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GL+ TV LLLS GAN  + NDDC+TAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSHCGTALHHAAKKGLQQTVHLLLSHGANPFIPNDDCNTALELAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  +  FCGW+RE Y P+FL+A+APQ M+RKIW V++P     P++PL+ EL IY
Sbjct: 124 VVRAIEGRLSLFCGWMRENYAPAFLDAIAPQFMTRKIWAVILPREVRTPTRPLKLELAIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +PR V+ LWK +I++PK +Q DPS+ I+D+ TK RYK   A EGDK QLQW  N
Sbjct: 184 PELQASKPRVVVKLWKCQIEQPKLNQADPSIIIFDKGTKTRYKILPAYEGDKQQLQWFYN 243

Query: 254 ACRGTSQF-----LPSANNHQSAEA-INANGWGNSANAESHNGWGAAARTEASCSGWMDE 307
           AC G +Q      +P AN      A  N++   +  +A S      A    AS    + E
Sbjct: 244 ACCGMAQVFNTAPVPPANLPMPNPAPANSSVAPSELSAPSKEDVELAMAINASIQSAIAE 303

Query: 308 --------PKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRI 359
                       +  GW    +   +NGWG S + P   K          AP        
Sbjct: 304 GVPNVQPNASTPNNNGWSIPPSN-SHNGWGPSVT-PAPSKTSGQSQARVDAP-------- 353

Query: 360 SGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGE 419
           S    YNGW VP        S+  +T  NP     +  + +  A   P+APP  E     
Sbjct: 354 SSSSTYNGWDVPGTSSGQSSSKPHKTETNP---PVLIPQEALQALPTPTAPPFAEETFYS 410

Query: 420 GPIRYPSVENSVADLHLPVLEDGV---------------SASNVKDDGS--SSSCVICWE 462
           GP+ YPS++++  D+ +P   +G                + ++  D G   S +CVIC +
Sbjct: 411 GPVHYPSIDSTPVDVTMPATTEGGTTGSTTAAAPTKQEENEADASDSGKTPSGTCVICLD 470

Query: 463 APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 508
           APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR  INQV+RLY V
Sbjct: 471 APVEGACIPCGHMAGCMSCLKDIESKKWGCPICRATINQVVRLYAV 516

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115471873|ref|NP_001059535.1| Os07g0446100 [Oryza sativa Japonica Group] gi|75327171|sp|Q7XI08.1|XB34_ORYSJ RecName: Full=Probable E3 ubiquitin-protein ligase XBOS34; AltName: Full=Ankyrin repeat domain and RING finger-containing protein XBOS34; AltName: Full=XB3 protein homolog 4 gi|33146928|dbj|BAC79949.1| auxin-regulated protein-like protein [Oryza sativa Japonica Group] gi|113611071|dbj|BAF21449.1| Os07g0446100 [Oryza sativa Japonica Group]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/542 (44%), Positives = 318/542 (58%), Gaps = 79/542 (14%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ V  G+ D IRALR+QGA LEW+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVLIEL 63

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 123

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 183

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 184 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 243

Query: 254 ACRGTSQF---------------------------LPSANNHQSAEAINANGWGNSANAE 286
           AC G  Q                             PS  + + A AINA+    SA AE
Sbjct: 244 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASIL--SAIAE 301

Query: 287 SHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 346
                     T A+               WG+  +    NGWG  ++      +  GQ  
Sbjct: 302 GVPDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV- 344

Query: 347 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 406
               P++ +S+       YNGW VP       QS      +  + F  +  + +  +   
Sbjct: 345 ----PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPV 391

Query: 407 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK------------DDGSS 454
           P+APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D ++
Sbjct: 392 PTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANA 451

Query: 455 S--------SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
           S        +CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY
Sbjct: 452 SNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLY 511

Query: 507 TV 508
            V
Sbjct: 512 AV 513

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082824|ref|XP_002306854.1| predicted protein [Populus trichocarpa] gi|222856303|gb|EEE93850.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/260 (73%), Positives = 216/260 (83%), Gaps = 3/260 (1%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQSL+SM Q   +QSKDELLYQ  IAG+VDA++AL S+GA LEW+D++GKTPLIVACMD
Sbjct: 1   MGQSLDSMTQ---KQSKDELLYQLAIAGNVDAVKALCSEGAILEWIDRDGKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           SGL NVAK LIE+GAN+NAYRPG   GTPLHHA KRGLE TV+LLLS GANALVRNDDC 
Sbjct: 58  SGLYNVAKVLIEMGANVNAYRPGRHAGTPLHHAVKRGLEQTVKLLLSSGANALVRNDDCQ 117

Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180
           TAL VARIKG+IN+VR IESHICYF GWLREFYGP FL A APQ +SRKIW  VIP G++
Sbjct: 118 TALDVARIKGNINIVRTIESHICYFTGWLREFYGPGFLRAFAPQFLSRKIWAAVIPQGSS 177

Query: 181 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240
           NP  P + ELVIYPS QDVQPR VIALW A+I+EP F++PDP LTI+DQ+TK +YK ASA
Sbjct: 178 NPMTPKKLELVIYPSSQDVQPRTVIALWNAEIEEPNFNRPDPELTIFDQSTKTQYKLASA 237

Query: 241 NEGDKHQLQWLDNACRGTSQ 260
           NEGDK QL WL +AC G  Q
Sbjct: 238 NEGDKQQLHWLYDACSGIPQ 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125600072|gb|EAZ39648.1| hypothetical protein OsJ_24077 [Oryza sativa Japonica Group]

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/542 (42%), Positives = 304/542 (56%), Gaps = 99/542 (18%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ                    +W+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQ--------------------QWIDKEGKTPLMVASMRPDLINVVQVLIEL 43

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 44  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 103

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 104 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 163

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 164 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 223

Query: 254 ACRGTSQF---------------------------LPSANNHQSAEAINANGWGNSANAE 286
           AC G  Q                             PS  + + A AINA+    SA AE
Sbjct: 224 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASIL--SAIAE 281

Query: 287 SHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 346
                     T A+               WG+  +    NGWG  ++      +  GQ  
Sbjct: 282 GVPDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV- 324

Query: 347 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 406
               P++ +S+       YNGW VP       QS      +  + F  +  + +  +   
Sbjct: 325 ----PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPV 371

Query: 407 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK------------DDGSS 454
           P+APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D ++
Sbjct: 372 PTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANA 431

Query: 455 S--------SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
           S        +CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY
Sbjct: 432 SNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLY 491

Query: 507 TV 508
            V
Sbjct: 492 AV 493

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125558167|gb|EAZ03703.1| hypothetical protein OsI_25836 [Oryza sativa Indica Group]

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/540 (42%), Positives = 303/540 (56%), Gaps = 95/540 (17%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ                    +W+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQ--------------------QWIDKEGKTPLMVASMRPDLINVVQVLIEL 43

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           GAN+NAYRPG   GT LHHAAK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 44  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 103

Query: 134 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 193
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 104 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 163

Query: 194 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 164 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 223

Query: 254 ACRGTSQF---------------------LPSANNHQSAE----AINANGWGNSANAESH 288
           AC G  Q                      LPS  +  S E    A+  N    SA AE  
Sbjct: 224 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMVINASIQSAIAEGV 283

Query: 289 NGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNT 348
                   T A+               WG+  +    NGWG  ++      +  GQ    
Sbjct: 284 PDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV--- 324

Query: 349 PAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPS 408
             P++ +S+       YNGW VP       QS      +  + F  +  + +  +   P+
Sbjct: 325 --PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPVPT 373

Query: 409 APPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK-------------DDGSSS 455
           APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D  +S+
Sbjct: 374 APPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANASN 433

Query: 456 S-------CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 508
           S       CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY V
Sbjct: 434 SGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV 493

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
TAIR|locus:2086263	462	XBAT35 "XB3 ortholog 5 in Arab	0.431	0.474	0.662	1.2e-110
TAIR|locus:505006458	376	XBAT34 "XB3 ortholog 4 in Arab	0.437	0.590	0.605	1.8e-92
TAIR|locus:2827572	344	AKR2B "ankyrin repeat-containi	0.246	0.363	0.328	1e-10
ZFIN|ZDB-GENE-030916-4	728	ankrd6b "ankyrin repeat domain	0.383	0.267	0.277	1e-09
UNIPROTKB|Q5ZIZ1	172	PPP1R12A "Protein phosphatase	0.190	0.563	0.35	7.6e-09
UNIPROTKB|E1C4S8	721	ANKRD6 "Uncharacterized protei	0.236	0.166	0.349	1e-08
TAIR|locus:4515102961	399	APD4 "ABERRANT POLLEN DEVELOPM	0.169	0.215	0.388	1.6e-08
MGI|MGI:2145661	1053	Ankrd28 "ankyrin repeat domain	0.220	0.106	0.362	1.8e-08
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.218	0.107	0.385	2e-08
DICTYBASE|DDB_G0288525	557	DDB_G0288525 [Dictyostelium di	0.122	0.111	0.446	2.4e-08

TAIR|locus:2086263 XBAT35 "XB3 ortholog 5 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 1.2e-110, Sum P(3) = 1.2e-110
 Identities = 145/219 (66%), Positives = 173/219 (78%)

Query:    13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
             Q+QSK ELLYQ V  G+ + IRAL   G  LEWMD+EGKTPLI+ACM+S L +VAKTLIE
Sbjct:     3 QQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTLIE 62

Query:    73 LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
             LG+N+NAYRPG   GTPLHHAAKRGLE TV+LLLS GAN LV NDDC T L VAR+KG  
Sbjct:    63 LGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKGFS 122

Query:   133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192
             NVVRAIE HIC F GW+REFYGP+FL+  APQL+SR++WVV++P G+ NP+KP + ELV+
Sbjct:   123 NVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLELVV 182

Query:   193 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT 231
             Y SLQD QPR V+ LWKA ++EPK  Q D S+ I D +T
Sbjct:   183 YASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNST 221

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:505006458 XBAT34 "XB3 ortholog 4 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 1.8e-92, Sum P(3) = 1.8e-92
 Identities = 135/223 (60%), Positives = 169/223 (75%)

Query:     8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
             M Q QQ QSKDE+L+Q V   +V+ I++L  +GA LE +DK G+TPLI+AC +  L +VA
Sbjct:     1 MGQ-QQSQSKDEMLFQEVSNNNVEGIKSLHHEGAGLEGVDKLGRTPLILACTNDDLYDVA 59

Query:    68 KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             KTL+ELG+N+NAYR G  GGTPLHHAAKRGL  TV+LLLS GAN LV +DD  TAL VAR
Sbjct:    60 KTLLELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVAR 119

Query:   128 IKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLR 187
              +G+ NVVRAIESHIC F G +RE+ G S L   APQL+SRK+WVVV+P G+ NP+KPL+
Sbjct:   120 DEGYSNVVRAIESHICLFSGCMREYSGSSLLNLFAPQLLSRKVWVVVVPTGSRNPTKPLK 179

Query:   188 FELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA 230
              ELV+Y S+QD QPR VI LWKA ++EPK  + D S+ I D +
Sbjct:   180 LELVLYDSIQDAQPRMVIPLWKANLEEPKSFRCDDSVMIIDDS 222

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2827572 AKR2B "ankyrin repeat-containing 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 42/128 (32%), Positives = 70/128 (54%)

Query:    12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
             ++ + ++ +++Q    GDV+ ++A  + G + +  D EG+T L  AC   G +  A+ L+
Sbjct:   215 EEGEEEESIVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFAC-GYGEVRCAQVLL 273

Query:    72 ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
             + GAN NA        TPLH+AA  G +  V LLL  GA    +N D    + VAR+   
Sbjct:   274 DAGANANAIDKNKN--TPLHYAAGYGRKECVSLLLENGAAVTQQNMDNKNPIDVARLNNQ 331

Query:   132 INVVRAIE 139
             ++VV+ +E
Sbjct:   332 LDVVKLLE 339

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030916-4 ankrd6b "ankyrin repeat domain 6b" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 56/202 (27%), Positives = 94/202 (46%)

Query:    21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
             L++  + G+ D I AL  +G +L+  DK+G T L  A    G     K L++ GAN++A 
Sbjct:    81 LHRAAVVGNTDVISALVQEGCALDRQDKDGNTALHEAAWH-GFSQTVKLLVKAGANVHAK 139

Query:    81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G   T LH A + G   + R+LL  G+    +N    T L V+    H++V+RA+  
Sbjct:   140 NKAGN--TALHLACQNGHVQSCRVLLLGGSRPDSKNSVGDTCLHVSARYNHVSVIRALLG 197

Query:   141 HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ 200
              IC      R   G + L  +A  L  RK   +++  G  +  K    E  +  + ++  
Sbjct:   198 AICSVTD--RNHTGDTALH-IAASLNHRKTVRMLLEAGADSRIKNNTGETALDQARENNS 254

Query:   201 PRAVIALWKAKID-EPKFHQPD 221
             P   + L KA  + + + H+ +
Sbjct:   255 PEVALLLTKAPAELQSRTHREE 276

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0030877 "beta-catenin destruction complex" evidence=NAS

GO:0048264 "determination of ventral identity" evidence=IMP

GO:0046330 "positive regulation of JNK cascade" evidence=IDA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IGI

GO:0008013 "beta-catenin binding" evidence=NAS

GO:0001702 "gastrulation with mouth forming second" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

UNIPROTKB|Q5ZIZ1 PPP1R12A "Protein phosphatase 1 regulatory subunit 12A" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 35/100 (35%), Positives = 53/100 (53%)

Query:    27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
             +GD + +  L  +GA + + + +G T L  AC+D   +++ K L+E GANIN  +P   G
Sbjct:    50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENGANIN--QPDNEG 106

Query:    87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
               PLH AA  G       L+S GA+    N +  T L +A
Sbjct:   107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146

GO:0000776 "kinetochore" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

UNIPROTKB|E1C4S8 ANKRD6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 43/123 (34%), Positives = 65/123 (52%)

Query:    21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
             L++  + G+ D I +L  +G +L+  DK+G T L  AC   G    AK L++ GAN+ A 
Sbjct:    79 LHRAAVVGNTDVIASLIQEGCALDRQDKDGNTALHEACWH-GFSQSAKVLVKAGANVLAK 137

Query:    81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G   TPLH A +     + R+LL  G+ A ++N+   T L VA    H+ +VR + S
Sbjct:   138 NKAGN--TPLHLACQNSHSQSTRVLLLGGSRADLKNNAGDTCLHVAARYNHLPIVRVLLS 195

Query:   141 HIC 143
               C
Sbjct:   196 AFC 198

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

TAIR|locus:4515102961 APD4 "ABERRANT POLLEN DEVELOPMENT 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 35/90 (38%), Positives = 50/90 (55%)

Query:   418 GEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAG 477
             GEG   + S ++SV    L    D    ++V +  + S C IC++AP +   +PCGH   
Sbjct:   313 GEG---FLSEDDSVRTCLLADKGDNDCCNDV-EASNKSLCAICFDAPRDCCFLPCGHCVS 368

Query:   478 CMSCLSEIKAKKGDCPVCRTKINQVIRLYT 507
             C  C ++IK  KG CP+CR KI  V R+YT
Sbjct:   369 CYQCGTKIKRTKGRCPICRKKIMHVKRIYT 398

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007067 "mitosis" evidence=IMP

MGI|MGI:2145661 Ankrd28 "ankyrin repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 42/116 (36%), Positives = 58/116 (50%)

Query:    17 KDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
             KD     W    G ++ ++ L S GA +   DK+  TPL  A   SG+I+V K L++LG 
Sbjct:   172 KDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAA-SSGMISVVKYLLDLGV 230

Query:    76 NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
             ++N   P   G TPLH A   G +  V  L+ CGAN   +N+   T L  A    H
Sbjct:   231 DMN--EPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTH 284

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 164 (62.8 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 44/114 (38%), Positives = 58/114 (50%)

Query:    28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             G    +R L + GA  +     G+TPL  A  D G  +V +  +E GA  +     G GG
Sbjct:   684 GHESVVRLLLTHGAQADSKANWGQTPLSRAAFD-GHESVVRLFLEHGAQADC--KDGDGG 740

Query:    88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             TPL  AA  G E  VRLLL  GA A  ++DDC T L  A   G+ +VV+ +  H
Sbjct:   741 TPLSSAAATGHESVVRLLLKHGAQADSKDDDCRTPLSYAASNGYESVVKLLLEH 794

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0288525 DDB_G0288525 [Dictyostelium discoideum (taxid:44689)]

 Score = 107 (42.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
 Identities = 29/65 (44%), Positives = 33/65 (50%)

Query:    47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
             D  G T LI      G  +V   LI++GANIN   P   G TP+HH    G E  V LLL
Sbjct:    42 DSSGST-LINIASQMGKKSVIIELIKMGANINI--PNNSGLTPIHHCVINGEEELVSLLL 98

Query:   107 SCGAN 111
               GAN
Sbjct:    99 RAGAN 103

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XI08	XB34_ORYSJ	6, ., 3, ., 2, ., -	0.4483	0.9114	0.9025	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018577001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (497 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	508
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-14
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	1e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-06
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	5e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-04
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-04
smart00248	30	smart00248, ANK, ankyrin repeats	7e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003
COG5236	493	COG5236, COG5236, Uncharacterized conserved protei	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
              G ++ ++ L   GA +   D +G+TPL +A   +G + + K L+E GA++NA    G
Sbjct: 15  ASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAK-NGHLEIVKLLLEKGADVNARDKDG 73

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
              TPLH AA+ G    V+LLL  GA+   R+ D  T L +A   GH+ VV+ +
Sbjct: 74  N--TPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           D++G+TPL +A   +G + V K L+E GA++NA    GR  TPLH AAK G    V+LLL
Sbjct: 4   DEDGRTPLHLAAS-NGHLEVVKLLLENGADVNAKDNDGR--TPLHLAAKNGHLEIVKLLL 60

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+   R+ D +T L +A   G+++VV+ +  H
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.0 bits (185), Expect = 9e-17
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
              G+++ ++ L  +GA +   D +  T L +A   +G + + K L+E GA++NA    G
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDTD--TALHLAAR-NGNLEIVKLLLEHGADVNAKDKDG 61

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRN 116
              T LH AA+ G    V+LLL  GA+  +++
Sbjct: 62  N--TALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 54  LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           L +A   +G + + K L+E GA++N     G   T LH AA+ G    V+LLL  GA+  
Sbjct: 1   LHLAAK-NGNLELVKLLLEKGADVNL----GDTDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 114 VRNDDCHTALGVARIKGHINVVRAIESH 141
            ++ D +TAL +A   G++ +V+ +  H
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.8 bits (166), Expect = 8e-14
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
              G ++ ++ L  +GA +   DK+G TPL +A   +G ++V K L++ GA++NA     
Sbjct: 48  AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR-NGNLDVVKLLLKHGADVNA--RDK 104

Query: 85  RGGTPLHHAAKRGLEPTVRLLL 106
            G TPLH AAK G    V+LLL
Sbjct: 105 DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 457 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 502
           CVIC E P     +PCGH+  C  C   +++KK  CP+CR  I  V
Sbjct: 5   CVICLERPRNVVFLPCGHLCLCEECAKRLRSKK-KCPICRQPIESV 49

Length = 49

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.5 bits (164), Expect = 1e-12
 Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 5/142 (3%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM----DS 61
              +   +       L+     GD   ++ L + GA +   D +G TPL +A +      
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE 121

Query: 62  GLINVAKTLIELGANI-NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           G I VAK L+E GA++         G TPLH AA  G    V LLL  GA+   RN    
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181

Query: 121 TALGVARIKGHINVVRAIESHI 142
           TAL  A   G I +V+ +    
Sbjct: 182 TALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 7e-09
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
            D  L+     G+++ ++ L   GA +   DK+G T L +A   +G + + K L+E GA
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAAR-NGNLEIVKLLLEHGA 85

Query: 76 NINA 79
          +IN 
Sbjct: 86 DINL 89

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
             D +R L   GA +   ++ G TPL +   ++  ++V K LI+ GA++NA      G T
Sbjct: 62  VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA--KDKVGRT 119

Query: 89  PLH-HAA-KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHIC 143
           PLH + +        +RLLL  GA+    +    T L V  +K     + ++R +     
Sbjct: 120 PLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL-LKSRNANVELLRLLIDAGA 178

Query: 144 YFCGWLREFYGPSFLEALA 162
                  +    S L    
Sbjct: 179 DVYA--VDDRFRSLLHHHL 195

Length = 471

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 453 SSSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 497
               C IC +   +     PCGH+  C  C+     KK  CP+CRT
Sbjct: 1   EELECPICLDLLRDPVVLTPCGHVF-CRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 24/138 (17%)

Query: 16  SKDELLYQWVIAGD---VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAK---T 69
             +  LY +++      V+ +R L + GA + +  + GKTPL +  +      V      
Sbjct: 10  IMEAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHL-YLHYSSEKVKDIVRL 68

Query: 70  LIELGANINAYRPGGRGGTPLH----HAAKRGLEPTVRLLLSCGANALVRNDDC-----H 120
           L+E GA++NA  P   G TPLH    +A        ++LL+  GA+   + D       H
Sbjct: 69  LLEAGADVNA--PERCGFTPLHLYLYNATT---LDVIKLLIKAGADVNAK-DKVGRTPLH 122

Query: 121 TALGVARIKGHINVVRAI 138
             L    I  +  V+R +
Sbjct: 123 VYLSGFNI--NPKVIRLL 138

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 70  LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           L+E G  I+     G G TPLH AAK G    V+ LL  G +  +R+ D  TAL +A
Sbjct: 1   LLEHG-PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L Q   +GD    R L + GA     D +G+TPL +AC + G + V + L+E GA+    
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGADPTLL 144

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
              G+  TPL  A + G    V+LL   
Sbjct: 145 DKDGK--TPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 456 SCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAKKGDCPVCRTK 498
            C IC +    G  V   PCGH+     CL +       CP+CR  
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVF-HKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 64  INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
            N    L+  G  IN       G TPLH+A        V+ LL  GAN  + N    T L
Sbjct: 172 KNRVNYLLSYGVPINI--KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL 229

Query: 124 GVARIKGHINVVRAIESH 141
            +A +  +  + + + ++
Sbjct: 230 HIAILNNNKEIFKLLLNN 247

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 12  QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
           +  + K   L+  +  GD+++I+ L   GA +   D  G  P+ +A +     ++ K L+
Sbjct: 120 KDAELK-TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA-IKHNFFDIIKLLL 177

Query: 72  ELGA--NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 128
           E GA  N+        G +PLH+AA+ G    ++LL+  G + + +  +  T L  A I
Sbjct: 178 EKGAYANVKDNN----GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII 232

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 52  TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           T L  A + SG + + K L+E G +IN  R    G T LH AA+ G    ++LLL
Sbjct: 3   TALHKAAI-SGRLELVKYLLEKGVDIN--RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           G T LH AA  G    V+ LL  G +    ++D +TAL +A   G++ V++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 457 CVICWEAPVEGACV-PCGHMAGCMSCLSE-IKAKKGDCPVCRTKI 499
           C IC E   E   + PCGH+  C SC+ + +K+ K  CP+CRT I
Sbjct: 2   CPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRND 117
           G TPLH AA+ G    V+LLL  GA+   R+ 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 29  DVDA---IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           D++A   +  L S G  +   D  G TPL  A   +      K L++LGAN N       
Sbjct: 168 DINAKNRVNYLLSYGVPINIKDVYGFTPLHYAV-YNNNPEFVKYLLDLGANPNLV--NKY 224

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANA 112
           G TPLH A     +   +LLL+ G + 
Sbjct: 225 GDTPLHIAILNNNKEIFKLLLNNGPSI 251

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 27  AGDVDAIRALRSQGASLE---WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPG 83
            G+++  + L   GA L+     D++G TPL  A + +G  ++ + L+E GA+ N+    
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL-NGDADIVELLLEAGADPNSRNS- 178

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
             G T L  AAK G    V+LLL  G +  +   +
Sbjct: 179 -YGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  V+ GD+  I  L    A L+  D  G TPLI+A M  G I + K L++ GANI+ +
Sbjct: 139 LHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA-MAKGDIAICKMLLDSGANIDYF 197

Query: 81  RPGGRGG--TPLHHAAKRGLEPTVRLLLSCGANA----LVRNDDCHT 121
              G+ G    L +A +      VRL +  GA+     ++  ++C  
Sbjct: 198 ---GKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTI 241

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
           D + IR L   GA +   D+   TPL  A       ++  TL+ELGAN+NA     +  T
Sbjct: 320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK--T 377

Query: 89  PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           P+H+AA R     +  LL  GA+    +    TAL  A
Sbjct: 378 PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           +A+ L+E GA++NA        TP+H+AA+RG    V LLLS GA+  +   D  + L  
Sbjct: 160 IAEMLLEGGADVNAKDIYCI--TPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC 217

Query: 126 ARIKGHINVVRAI 138
           A    +I+ ++AI
Sbjct: 218 AVDSKNIDTIKAI 230

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 18  DELLYQWVIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGAN 76
           D+     +I  + +  + L S GA +   D+  G T L  A  ++    + + L+  GAN
Sbjct: 137 DKKSKDDII--EAEITKLLLSYGADINMKDRHKGNTALHYAT-ENKDQRLTELLLSYGAN 193

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +N   P     +PLHHA K   +P V +LL  GA+   R+   +T L       HI+V  
Sbjct: 194 VNI--PDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPL-------HISVGY 244

Query: 137 AIESHI 142
             +  I
Sbjct: 245 CKDYDI 250

Length = 477

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 457 CVICWEAPVEGACVPCGHMAGCMSCL--SEIKAKKGDCPVCRTK 498
           C +C E P   +C PCGH+  C+SCL  S  K K   CP+CR K
Sbjct: 218 CFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAK 260

Length = 271

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 49 EGKTPLIVACMDSGLINVAKTLIELGANINA 79
          +G TPL +A   +G + V K L+E GA++NA
Sbjct: 1  DGNTPLHLAAR-NGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 59  MDSGLINVAKT----LIE--LGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANA 112
           M S L+ VA T    L+E  L A ++      +G TPLH AA +G E  V +LL    N 
Sbjct: 525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV 584

Query: 113 LVRNDDCHTALGVARIKGHINVVR 136
            +R+ + +TAL  A    H  + R
Sbjct: 585 HIRDANGNTALWNAISAKHHKIFR 608

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGL--INVAKTLIELGANINAYRPGGRGGTPL 90
           +R L   G      D  G TPL      S      V   L+  G +INA      G TPL
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP-LLIAGISINA--RNRYGQTPL 261

Query: 91  HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 137
           H+AA        R L++ GA+    + D +T L +     +   VRA
Sbjct: 262 HYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRA 308

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD-SGLINVAKTLIELGANINAYRPG 83
            +    + ++ L   GA++   D  G TPL+ A    S   ++ + L++ GAN+N     
Sbjct: 81  NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS- 139

Query: 84  GRGGTPLHHAAKRGLE--PTVRLLLSCGAN 111
             G   LH   +        ++LL+  G +
Sbjct: 140 -DGENLLHLYLESNKIDLKILKLLIDKGVD 168

Length = 422

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 49 EGKTPLIVACMDSGLINVAKTLIELGANINA 79
          +G+TPL +A   +G + V K L++ GA+INA
Sbjct: 1  DGRTPLHLAAE-NGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 67  AKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           A+ L+  GA+ N     GR  TPLH A   G    VR+LL  GA+  + + D  T L +A
Sbjct: 98  ARILLTGGADPNCRDYDGR--TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Query: 127 RIKGHINVVRAIESH-ICYF----CGWLREFYGPSFLEALAPQLMS 167
              G   VV+ +  H  C+F          F G       +P    
Sbjct: 156 EENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPISSH 201

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 25 VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
           I+G ++ ++ L  +G  +   D++G T L +A   +G + V K L+
Sbjct: 9  AISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE-NGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           +  +V  I  L   GA +E + ++  T L  A   +      KTLI+ GAN+N+      
Sbjct: 384 VRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS--KNKD 441

Query: 86  GGTPLHHAAKRGLEPTV-RLLLSCGAN 111
             TPLH+A K+  +  V  +LL  GA+
Sbjct: 442 LSTPLHYACKKNCKLDVIEMLLDNGAD 468

Length = 682

>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 443 VSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA--KKGDCPVCRTKIN 500
            ++S    D  + +C IC  +    A  PCGH   C +C   ++A   +  CP+CRT+  
Sbjct: 50  TTSSADDTDEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETE 108

Query: 501 QVI 503
            V+
Sbjct: 109 AVV 111

Length = 493

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGAN 111
           G TPLH AA+ G    V+LLL  GA+
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	508
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	99.98
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
KOG0514	452	consensus Ankyrin repeat protein [General function	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
PHA02989	494	ankyrin repeat protein; Provisional	99.94
PHA02917	661	ankyrin-like protein; Provisional	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.9
PHA02730	672	ankyrin-like protein; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
PHA02792	631	ankyrin-like protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
PHA02792	631	ankyrin-like protein; Provisional	99.89
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.85
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.73
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.72
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.62
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.59
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.58
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.53
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.51
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	99.51
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.44
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.41
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.37
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.29
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	99.12
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	99.11
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.97
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.95
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.93
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.92
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.92
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.91
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.86
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.84
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.82
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.8
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.77
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.76
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.76
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.74
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.74
PHA02929	238	N1R/p28-like protein; Provisional	98.72
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.66
PF13606	30	Ank_3: Ankyrin repeat	98.65
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.64
PF13606	30	Ank_3: Ankyrin repeat	98.63
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.62
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.59
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.59
KOG0522	560	consensus Ankyrin repeat protein [General function	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.55
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.52
PHA02926	242	zinc finger-like protein; Provisional	98.49
PF14634	44	zf-RING_5: zinc-RING finger domain	98.39
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.38
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.37
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.3
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.29
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.29
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.26
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.25
KOG2384	223	consensus Major histocompatibility complex protein	98.25
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.24
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.2
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.2
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.18
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.13
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.08
KOG2384	223	consensus Major histocompatibility complex protein	98.07
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.02
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.0
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.99
KOG0511	516	consensus Ankyrin repeat protein [General function	97.97
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.96
KOG0511	516	consensus Ankyrin repeat protein [General function	97.94
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	97.86
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.82
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.8
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.77
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.75
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.65
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.54
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.5
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.44
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.43
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.35
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.3
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.22
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.17
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.1
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.1
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.98
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.8
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.74
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.65
KOG2505	591	consensus Ankyrin repeat protein [General function	96.64
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.62
KOG2505	591	consensus Ankyrin repeat protein [General function	96.6
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	96.48
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.39
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.2
COG5152	259	Uncharacterized conserved protein, contains RING a	96.19
KOG0825	1134	consensus PHD Zn-finger protein [General function	96.14
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	95.97
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.91
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.86
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	95.86
PF04641	260	Rtf2: Rtf2 RING-finger	95.58
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.17
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.85
KOG0297	391	consensus TNF receptor-associated factor [Signal t	94.74
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.73
KOG1001	674	consensus Helicase-like transcription factor HLTF/	94.13
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.0
KOG3002	299	consensus Zn finger protein [General function pred	93.72
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.54
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.46
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	93.42
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	93.36
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	93.32
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	93.2
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	92.78
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	92.52
KOG2660	331	consensus Locus-specific chromosome binding protei	92.48
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	92.39
COG5219	1525	Uncharacterized conserved protein, contains RING Z	92.22
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	92.17
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	91.54
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	91.46
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	90.93
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	90.83
KOG2113	394	consensus Predicted RNA binding protein, contains	89.96
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	86.96
KOG3842	429	consensus Adaptor protein Pellino [Signal transduc	86.89
PF04710	416	Pellino: Pellino; InterPro: IPR006800 Pellino is i	86.53
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	86.48
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	86.15
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	85.85
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	85.14
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.92
PHA02862	156	5L protein; Provisional	84.68
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	84.07
PHA03096	284	p28-like protein; Provisional	83.82
KOG4445	368	consensus Uncharacterized conserved protein, conta	82.81
PHA02825	162	LAP/PHD finger-like protein; Provisional	82.49
COG5222	427	Uncharacterized conserved protein, contains RING Z	81.3
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	80.98
KOG1941	518	consensus Acetylcholine receptor-associated protei	80.53

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.8e-36  Score=254.21  Aligned_cols=170  Identities=26%  Similarity=0.252  Sum_probs=161.9

Q ss_pred             ccCCchHHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHc-CCCCcccCCCCCCCcHH
Q 010517           13 QRQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPL   90 (508)
Q Consensus        13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~n~~~~d~~g~tpL   90 (508)
                      .|.+|+|||||||..|+.++|++|++ .+..+|.+|..|+||||+||.. |+.|+|+.|+.+ |+++|..  +..|.|+|
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~-g~~evVk~Ll~r~~advna~--tn~G~T~L  110 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN-GNDEVVKELLNRSGADVNAT--TNGGQTCL  110 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc-CcHHHHHHHhcCCCCCccee--cCCCccee
Confidence            35699999999999999999999994 6788999999999999999997 999999999999 9999999  89999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHH
Q 010517           91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKI  170 (508)
Q Consensus        91 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i  170 (508)
                      |||+.+|+.+|+++|+++|+.++.+|..|.||||-|+..|+++++++|+..|+.+|  .+|..|+|||| .|...++.+.
T Consensus       111 HyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n--~qDk~G~TpL~-~al~e~~~d~  187 (226)
T KOG4412|consen  111 HYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN--TQDKYGFTPLH-HALAEGHPDV  187 (226)
T ss_pred             hhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC--cccccCccHHH-HHHhccCchH
Confidence            99999999999999999999999999999999999999999999999999999999  99999999999 8988999999


Q ss_pred             HHHhhhCCCCCCCCCccc
Q 010517          171 WVVVIPCGTANPSKPLRF  188 (508)
Q Consensus       171 ~~~Ll~~g~~~~~~~~~~  188 (508)
                      ..+|+.+|++.+..+..+
T Consensus       188 a~lLV~~gAd~~~edke~  205 (226)
T KOG4412|consen  188 AVLLVRAGADTDREDKEG  205 (226)
T ss_pred             HHHHHHhccceeeccccC
Confidence            999999999998888544

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-34  Score=242.34  Aligned_cols=206  Identities=21%  Similarity=0.221  Sum_probs=186.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCC-CCCccCC-CCChHHHHHHHhCCCHHHHHHHHH-cCCCCcccCCCCCCCcHHHHH
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGA-SLEWMDK-EGKTPLIVACMDSGLINVAKTLIE-LGANINAYRPGGRGGTPLHHA   93 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~-~G~TpLh~Aa~~~g~~~~v~~Ll~-~ga~~n~~~~d~~g~tpLh~A   93 (508)
                      +.++.+.+++.....-|+.|++... .++.++. +|+|||||||.. |+.+++.+|++ .+..+|.+  |..||||||+|
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~-g~~eiv~fLlsq~nv~~ddk--DdaGWtPlhia   79 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSF-GHVEIVYFLLSQPNVKPDDK--DDAGWTPLHIA   79 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeec-CchhHHHHHHhcCCCCCCCc--cccCCchhhhh
Confidence            4678888888888899999998776 6777776 999999999998 99999999994 56667766  89999999999


Q ss_pred             HHcCCHHHHHHHHHC-CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHH
Q 010517           94 AKRGLEPTVRLLLSC-GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (508)
Q Consensus        94 ~~~g~~~~v~~Ll~~-ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~  172 (508)
                      +..|+.++|+.|+.+ |+|+|..++.|.|+||||+.+|..+|+++|+++|+.++  ++|..|.|||| -|+..|..++++
T Consensus        80 ~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~--~kD~~~qtplH-RAAavGklkvie  156 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR--IKDKQGQTPLH-RAAAVGKLKVIE  156 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc--ccccccCchhH-HHHhccchhhHH
Confidence            999999999999998 99999999999999999999999999999999999999  99999999999 999999999999


Q ss_pred             HhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhh
Q 010517          173 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (508)
Q Consensus       173 ~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~  239 (508)
                      +|+..|+..+.+|..+.+++|.+.-+++++....|+..        ++|  +...|++| |++..+.
T Consensus       157 ~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~--------gAd--~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  157 YLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRA--------GAD--TDREDKEG-TALRIAC  212 (226)
T ss_pred             HHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHh--------ccc--eeeccccC-chHHHHH
Confidence            99999999999999999999999877787766654443        777  88889988 9988775

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=265.22  Aligned_cols=206  Identities=15%  Similarity=0.131  Sum_probs=182.5

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp   89 (508)
                      .+.+|.+|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+.. |+.+++++|+++|++++.+  |..|+||
T Consensus        23 a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~-g~~eiV~lLL~~Gadvn~~--d~~G~Tp   97 (284)
T PHA02791         23 AFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGMDDSQF--DDKGNTA   97 (284)
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCH
Confidence            35679999999999999999999999999999988764  78999999997 9999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCCCCC-cHHHHHHHhCCHHHHHHHHHcCCcccccccc-cCCCCHHHHHHhhcCC
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCH-TALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQLMS  167 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~-~~g~tpL~~~A~~~~~  167 (508)
                      ||+|+..|+.+++++|+++|++++.++..|. ||||+|+..|+.+++++|++++.+..    | ..|.|||| +|+..|+
T Consensus        98 Lh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~----d~~~g~TpLh-~Aa~~g~  172 (284)
T PHA02791         98 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCIH-ITIKNGH  172 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc----ccccCccHHH-HHHHcCC
Confidence            9999999999999999999999999999885 89999999999999999999976542    3 35899999 9999999


Q ss_pred             HHHHHHhhhCCCCCCCCCcccccc-ccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhH
Q 010517          168 RKIWVVVIPCGTANPSKPLRFELV-IYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYK  236 (508)
Q Consensus       168 ~~i~~~Ll~~g~~~~~~~~~~~~~-l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~  236 (508)
                      .+++++|+++|++++.++..+.++ ++.++..++...+..|+        .+|++  ++.+|.++ +++.
T Consensus       173 ~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl--------~~Ga~--in~~~~~~-~~l~  231 (284)
T PHA02791        173 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALF--------KYDIN--IYSVNLEN-VLLD  231 (284)
T ss_pred             HHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH--------HCCCC--CccCcccC-ccCC
Confidence            999999999999999988777776 89999888866555444        34788  78888854 5553

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.98  E-value=3.6e-31  Score=274.70  Aligned_cols=225  Identities=17%  Similarity=0.187  Sum_probs=199.8

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCC-------------
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-------------   76 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~-------------   76 (508)
                      .+..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|+++|++             
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  106 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI-GAHDIIKLLIDNGVDTSILPIPCIEKDM  106 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcchhccCCHHH
Confidence            456678899999999999999999999999999999999999999999997 999999999887754             


Q ss_pred             ----------CcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517           77 ----------INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (508)
Q Consensus        77 ----------~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  146 (508)
                                ++.+  |..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       107 i~~ll~~g~d~n~~--~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        107 IKTILDCGIDVNIK--DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             HHHHHHCcCCCCCC--CCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence                      4555  7889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCccee
Q 010517          147 GWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTI  226 (508)
Q Consensus       147 ~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~  226 (508)
                        .++..|.|||| +|+..|+.+++++|+++|+++...+..+.++++.++.....  ++.++.        .+.+  ++.
T Consensus       185 --~~~~~g~tpL~-~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~--~i~~Ll--------~~~~--in~  249 (434)
T PHA02874        185 --VKDNNGESPLH-NAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS--AIELLI--------NNAS--IND  249 (434)
T ss_pred             --CCCCCCCCHHH-HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChH--HHHHHH--------cCCC--CCC
Confidence              89999999999 99999999999999999999998888899999998876542  222111        2555  788


Q ss_pred             ccCCCcchhHhhhhcCCChhHHHHHH
Q 010517          227 YDQATKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       227 ~d~~~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      .|..|.||||+|+........++.|.
T Consensus       250 ~d~~G~TpLh~A~~~~~~~~iv~~Ll  275 (434)
T PHA02874        250 QDIDGSTPLHHAINPPCDIDIIDILL  275 (434)
T ss_pred             cCCCCCCHHHHHHhcCCcHHHHHHHH
Confidence            89999999999987666666666665

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.3e-31  Score=275.19  Aligned_cols=211  Identities=20%  Similarity=0.181  Sum_probs=185.8

Q ss_pred             ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCH----------------------------
Q 010517           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI----------------------------   64 (508)
Q Consensus        13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~----------------------------   64 (508)
                      .+..+.||||+|+..|+.++|++|+++|+++|.+|.+|.||||+||.. |+.                            
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~  111 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKE-PNKLGMKEMIRSINKCSVFYTLVAIKDAFNN  111 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-ccHhHHHHHHHHHhccccccchhhHHHHHHc
Confidence            345788999999999999999999999999999999999999999975 332                            


Q ss_pred             ------------------------------------HHHHHHHHcCCCCcccCCCCC-CCcHHHHHHHcCCHHHHHHHHH
Q 010517           65 ------------------------------------NVAKTLIELGANINAYRPGGR-GGTPLHHAAKRGLEPTVRLLLS  107 (508)
Q Consensus        65 ------------------------------------~~v~~Ll~~ga~~n~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~  107 (508)
                                                          +++++|+++|++++..  +.. |+||||+|+..|+.+++++|++
T Consensus       112 ~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~--~~~~g~tpLh~A~~~~~~~iv~~Ll~  189 (477)
T PHA02878        112 RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMK--DRHKGNTALHYATENKDQRLTELLLS  189 (477)
T ss_pred             CCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCcc--CCCCCCCHHHHHHhCCCHHHHHHHHH
Confidence                                                3778888899999988  666 9999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhh-cCCHHHHHHhhhCCCCCCCCCc
Q 010517          108 CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ-LMSRKIWVVVIPCGTANPSKPL  186 (508)
Q Consensus       108 ~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~-~~~~~i~~~Ll~~g~~~~~~~~  186 (508)
                      +|++++..|..|.||||+|+..|+.+++++|++.|++++  .+|..|.|||| +|+. .++.+++++|+++|++++..+.
T Consensus       190 ~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in--~~d~~g~TpLh-~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        190 YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD--ARDKCGNTPLH-ISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence            999999999999999999999999999999999999999  99999999999 7775 4789999999999999988774


Q ss_pred             -cccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517          187 -RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (508)
Q Consensus       187 -~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~  241 (508)
                       .+.+++|.+..  ..+.+.        .+..+++|  ++..|..|.||+++|...
T Consensus       267 ~~g~TpLh~A~~--~~~~v~--------~Ll~~gad--in~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        267 ILGLTALHSSIK--SERKLK--------LLLEYGAD--INSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             CCCCCHHHHHcc--CHHHHH--------HHHHCCCC--CCCcCCCCCCHHHHHHHH
Confidence             68899999842  322222        23345888  889999999999999864

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.3e-30  Score=265.42  Aligned_cols=230  Identities=20%  Similarity=0.173  Sum_probs=198.6

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCC-----------------------CCCccCCCCChHHHHHHHhCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-----------------------SLEWMDKEGKTPLIVACMDSGL   63 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-----------------------~~~~~d~~G~TpLh~Aa~~~g~   63 (508)
                      +.+++..+..|.||||+|+..|+.++|++|+++|+                       +++.+|..|.||||+|+.. |+
T Consensus        58 Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~-~~  136 (434)
T PHA02874         58 GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKK-GD  136 (434)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHC-CC
Confidence            34566778899999999999999999999988764                       5677889999999999997 99


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q 010517           64 INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC  143 (508)
Q Consensus        64 ~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  143 (508)
                      .+++++|+++|++++.+  |..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.|+
T Consensus       137 ~~~v~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~  214 (434)
T PHA02874        137 LESIKMLFEYGADVNIE--DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN  214 (434)
T ss_pred             HHHHHHHHhCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            99999999999999998  8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCc
Q 010517          144 YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPS  223 (508)
Q Consensus       144 ~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~  223 (508)
                      +++  .++..|.|||| .|+..+. +++++|+ .|++++.++..+.+++|.+++......++.++       ..+++|  
T Consensus       215 ~i~--~~~~~g~TpL~-~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~L-------l~~gad--  280 (434)
T PHA02874        215 HIM--NKCKNGFTPLH-NAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDIL-------LYHKAD--  280 (434)
T ss_pred             CCc--CCCCCCCCHHH-HHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHH-------HHCcCC--
Confidence            998  88999999999 8888765 5666666 68889999989999999998765433333322       234778  


Q ss_pred             ceeccCCCcchhHhhhhcCCChhHHHHHHH
Q 010517          224 LTIYDQATKIRYKFASANEGDKHQLQWLDN  253 (508)
Q Consensus       224 i~~~d~~~~t~l~~a~~~~~~~~~l~~l~~  253 (508)
                      ++.+|..|+||+++|.........++.+..
T Consensus       281 ~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~  310 (434)
T PHA02874        281 ISIKDNKGENPIDTAFKYINKDPVIKDIIA  310 (434)
T ss_pred             CCCCCCCCCCHHHHHHHhCCccHHHHHHHH
Confidence            888999999999999876545555555553

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=3.4e-30  Score=266.10  Aligned_cols=240  Identities=16%  Similarity=0.137  Sum_probs=194.7

Q ss_pred             cccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCC--CHHHHHHHHHcCCCCcccCCC
Q 010517            6 NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG--LINVAKTLIELGANINAYRPG   83 (508)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g--~~~~v~~Ll~~ga~~n~~~~d   83 (508)
                      .+.++|.+|..|.||||+|+..|+.++|++||++|+++|.+|.+|.||||+|+.. +  ..+++++|+++|+++|... |
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~-~~~~~e~v~lLl~~Gadin~~~-d  138 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT-DDEVIERINLLVQYGAKINNSV-D  138 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc-CCchHHHHHHHHHcCCCccccc-C
Confidence            3567888999999999999999999999999999999999999999999999875 4  4899999999999999632 7


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC--HHHHHHHHHcCCcccccccccCCCCHHHHH
Q 010517           84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH--INVVRAIESHICYFCGWLREFYGPSFLEAL  161 (508)
Q Consensus        84 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~--~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~  161 (508)
                      ..|.|||| |+..|+.+++++|++.|++++.+|..|.||||+|+..++  .+++++|++.|++++  .+|.+|.|||| +
T Consensus       139 ~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin--~~d~~G~TpLH-~  214 (446)
T PHA02946        139 EEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS--KPDHDGNTPLH-I  214 (446)
T ss_pred             CCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-H
Confidence            89999997 677899999999999999999999999999999987654  689999999999999  89999999999 8


Q ss_pred             HhhcC--CHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCC--------CCCCCC---cceec-
Q 010517          162 APQLM--SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPK--------FHQPDP---SLTIY-  227 (508)
Q Consensus       162 A~~~~--~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~--------~~~~d~---~i~~~-  227 (508)
                      |+..+  +.+++++|+. |++++.++..+.++++.++.......+..++........        ..+.+.   .++.. 
T Consensus       215 Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g  293 (446)
T PHA02946        215 VCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKG  293 (446)
T ss_pred             HHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcC
Confidence            88875  7899999885 899999999999999999988775444433322111000        000110   01111 


Q ss_pred             cCCCcchhHhhhhcCCChhHHHHHHH
Q 010517          228 DQATKIRYKFASANEGDKHQLQWLDN  253 (508)
Q Consensus       228 d~~~~t~l~~a~~~~~~~~~l~~l~~  253 (508)
                      +..|+||||+|+. .+....++.|..
T Consensus       294 ~~~~~TpLh~Aa~-~g~~eivk~Ll~  318 (446)
T PHA02946        294 KQYDSTDFKMAVE-VGSIRCVKYLLD  318 (446)
T ss_pred             cccCCCHHHHHHH-cCCHHHHHHHHH
Confidence            2356799999986 455666666663

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=2.1e-30  Score=275.92  Aligned_cols=180  Identities=16%  Similarity=0.133  Sum_probs=132.0

Q ss_pred             cCcccc-cCCchHHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCC--HHHHHHHHHcCCCCcccCC
Q 010517            8 MNQHQQ-RQSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL--INVAKTLIELGANINAYRP   82 (508)
Q Consensus         8 ~~~~~~-~~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~--~~~v~~Ll~~ga~~n~~~~   82 (508)
                      .++|.+ |..|.||||+|+.  .++.++|++|+++|+++|.+|..|.||||+|+.. |+  .++|++|+++|+++|.+  
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~-g~~~~eIVklLLe~GADVN~k--  243 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLIT-GNVCASVIKKIIELGGDMDMK--  243 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCCCHHHHHHHHHcCCCCCCC--
Confidence            455666 6777888887654  3567788888888888877777788888888776 53  47788888888888777  


Q ss_pred             CCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHHCCCCccccCCCCCcHHHH
Q 010517           83 GGRGGTPLHHA-------------------------------------AKRGLEPTVRLLLSCGANALVRNDDCHTALGV  125 (508)
Q Consensus        83 d~~g~tpLh~A-------------------------------------~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~  125 (508)
                      |..|+||||+|                                     +..|+.+++++|+++|++++.+|..|+||||+
T Consensus       244 D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~  323 (764)
T PHA02716        244 CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQ  323 (764)
T ss_pred             CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHH
Confidence            67777887754                                     34577788888888888777777778888887


Q ss_pred             HHH--hCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhh--------------cCCHHHHHHhhhCCCCCCCCCcccc
Q 010517          126 ARI--KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ--------------LMSRKIWVVVIPCGTANPSKPLRFE  189 (508)
Q Consensus       126 A~~--~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~--------------~~~~~i~~~Ll~~g~~~~~~~~~~~  189 (508)
                      |+.  .++.+++++|+++|++++  .+|..|+|||| +|+.              .++.+++++|+++|++++.++..+.
T Consensus       324 Aaa~~~~~~eIVklLLe~GADIN--~kD~~G~TPLH-~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~  400 (764)
T PHA02716        324 YILRHNISTDIIKLLHEYGNDLN--EPDNIGNTVLH-TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGY  400 (764)
T ss_pred             HHHHhCCCchHHHHHHHcCCCCc--cCCCCCCCHHH-HHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCC
Confidence            654  346777888888887777  77777888887 5543              2567788888888877777777777


Q ss_pred             cccc
Q 010517          190 LVIY  193 (508)
Q Consensus       190 ~~l~  193 (508)
                      ++++
T Consensus       401 TPLh  404 (764)
T PHA02716        401 TPLT  404 (764)
T ss_pred             ChHH
Confidence            7775

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=245.01  Aligned_cols=163  Identities=17%  Similarity=0.103  Sum_probs=152.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC-cHHHHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG-TPLHHAA   94 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~-tpLh~A~   94 (508)
                      +|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  +..|+ ||||+|+
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~-g~~eivk~Ll~~gadin~~--~~~g~~TpL~~Aa  136 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHAV  136 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcCcc--CCCCCcHHHHHHH
Confidence            478999999999999999999999999999999999999999998 9999999999999999988  67774 8999999


Q ss_pred             HcCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCH-HHHHHhhcCCHHHHH
Q 010517           95 KRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF-LEALAPQLMSRKIWV  172 (508)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tp-L~~~A~~~~~~~i~~  172 (508)
                      ..|+.+++++|++++.+.  .| ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|| || +|+..|+.++++
T Consensus       137 ~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n--~~d~~g~t~~L~-~Aa~~~~~e~v~  211 (284)
T PHA02791        137 MLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNKDLEMLQ  211 (284)
T ss_pred             HcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC--cccCCCCChHHH-HHHHcCCHHHHH
Confidence            999999999999987653  23 358999999999999999999999999999  889999987 99 999999999999


Q ss_pred             HhhhCCCCCCCCCc
Q 010517          173 VVIPCGTANPSKPL  186 (508)
Q Consensus       173 ~Ll~~g~~~~~~~~  186 (508)
                      +|+++|++++.++.
T Consensus       212 lLl~~Ga~in~~~~  225 (284)
T PHA02791        212 ALFKYDINIYSVNL  225 (284)
T ss_pred             HHHHCCCCCccCcc
Confidence            99999999998885

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=267.10  Aligned_cols=213  Identities=17%  Similarity=0.174  Sum_probs=101.5

Q ss_pred             ccccCCchHHHHH-----HHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHH--HhCCCHHHHHHHHHcCCCCcccCCC
Q 010517           11 HQQRQSKDELLYQ-----WVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVAC--MDSGLINVAKTLIELGANINAYRPG   83 (508)
Q Consensus        11 ~~~~~~g~t~L~~-----Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa--~~~g~~~~v~~Ll~~ga~~n~~~~d   83 (508)
                      +..+..|.||||+     |+..|+.+++++|+++|++++..|..|.||||+|+  .. |+.+++++|+++|++++..  +
T Consensus        62 ~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~-~~~~iv~~Ll~~g~~~~~~--~  138 (480)
T PHA03100         62 NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKS-NSYSIVEYLLDNGANVNIK--N  138 (480)
T ss_pred             CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhccc-ChHHHHHHHHHcCCCCCcc--C
Confidence            3334444444444     44444444444444444444444444444444444  43 4444444444444444444  4


Q ss_pred             CCCCcHHHHHHHcC--CHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCC------C
Q 010517           84 GRGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG------P  155 (508)
Q Consensus        84 ~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g------~  155 (508)
                      ..|.||||+|+..|  +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|      .
T Consensus       139 ~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~~~~~~~  216 (480)
T PHA03100        139 SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN--AGDIETLLFTIFE  216 (480)
T ss_pred             CCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc--CCCCCCCcHHHHH
Confidence            44444444444444  4444444444444444444444445554444444444444444444444  444444      4


Q ss_pred             CHHHHHHhhcCC--HHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcc
Q 010517          156 SFLEALAPQLMS--RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKI  233 (508)
Q Consensus       156 tpL~~~A~~~~~--~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t  233 (508)
                      |||| .|+..++  .+++++|+++|++++.++..+.++++.++..+....+..|+        ..|+|  ++..|..|.|
T Consensus       217 t~l~-~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll--------~~gad--~n~~d~~g~t  285 (480)
T PHA03100        217 TPLH-IAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL--------DLGAN--PNLVNKYGDT  285 (480)
T ss_pred             hHHH-HHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH--------HcCCC--CCccCCCCCc
Confidence            4444 4444444  45555555555544444444455555554444433222222        12444  4445555555


Q ss_pred             hhHhhh
Q 010517          234 RYKFAS  239 (508)
Q Consensus       234 ~l~~a~  239 (508)
                      |+++|.
T Consensus       286 pl~~A~  291 (480)
T PHA03100        286 PLHIAI  291 (480)
T ss_pred             HHHHHH
Confidence            555554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.4e-29  Score=261.40  Aligned_cols=220  Identities=17%  Similarity=0.141  Sum_probs=192.8

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      +.+.+.++..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|++.|++.+... +..|
T Consensus        25 g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~-~~~g  102 (413)
T PHA02875         25 GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEE-GDVKAVEELLDLGKFADDVF-YKDG  102 (413)
T ss_pred             CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHC-CCHHHHHHHHHcCCcccccc-cCCC
Confidence            456677888999999999999999999999999999999999999999999997 99999999999998775432 6789


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcC
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~  166 (508)
                      +||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..|
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~TpL~-~A~~~g  179 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTPLI-IAMAKG  179 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHH-HHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999999  89999999999 999999


Q ss_pred             CHHHHHHhhhCCCCCCCCCcccc-ccccccccccChHHHHHHHHhhhcCCCCCCCCCcce-eccCCCcchhHhhh
Q 010517          167 SRKIWVVVIPCGTANPSKPLRFE-LVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLT-IYDQATKIRYKFAS  239 (508)
Q Consensus       167 ~~~i~~~Ll~~g~~~~~~~~~~~-~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~-~~d~~~~t~l~~a~  239 (508)
                      +.+++++|+++|++++..+..+. ++++.++..+..+.+..|+.        +|+|+.+. ..++++.|+++++.
T Consensus       180 ~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~--------~gad~n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        180 DIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK--------RGADCNIMFMIEGEECTILDMIC  246 (413)
T ss_pred             CHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH--------CCcCcchHhhcCCCchHHHHHHH
Confidence            99999999999999988876665 55666888877665554443        36674332 34677889998765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=1.1e-29  Score=270.44  Aligned_cols=171  Identities=18%  Similarity=0.186  Sum_probs=152.2

Q ss_pred             cccCcccccCCchHHHHHHHHcCC--HHHHHHHHHcCCCCCccCCCCChHHHHHH-------------------------
Q 010517            6 NSMNQHQQRQSKDELLYQWVIAGD--VDAIRALRSQGASLEWMDKEGKTPLIVAC-------------------------   58 (508)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~Aa~~g~--~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa-------------------------   58 (508)
                      ++.++|.+|..|.||||+|+..|+  .++|++||++|+|+|.+|..|.||||+|+                         
T Consensus       201 ~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~  280 (764)
T PHA02716        201 NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKN  280 (764)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccccc
Confidence            456788899999999999999995  59999999999999999999999999763                         


Q ss_pred             ------------HhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCccccCCCCCcHHH
Q 010517           59 ------------MDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK--RGLEPTVRLLLSCGANALVRNDDCHTALG  124 (508)
Q Consensus        59 ------------~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh  124 (508)
                                  .. |+.+++++|+++|+++|.+  |..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||
T Consensus       281 ~~~~L~~~i~AA~~-g~leiVklLLe~GAdIN~k--D~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH  357 (764)
T PHA02716        281 IPMILHSYITLARN-IDISVVYSFLQPGVKLHYK--DSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH  357 (764)
T ss_pred             chhhhHHHHHHHHc-CCHHHHHHHHhCCCceecc--CCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHH
Confidence                        33 7889999999999999998  8899999999875  46899999999999999999999999999


Q ss_pred             HHHH--------------hCCHHHHHHHHHcCCcccccccccCCCCHHHHH---HhhcCCHHHHHHhhhCCCCC
Q 010517          125 VARI--------------KGHINVVRAIESHICYFCGWLREFYGPSFLEAL---APQLMSRKIWVVVIPCGTAN  181 (508)
Q Consensus       125 ~A~~--------------~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~---A~~~~~~~i~~~Ll~~g~~~  181 (508)
                      +|+.              .++.+++++|+++|++++  .+|..|+||||.+   +...++.+++++|++.|+..
T Consensus       358 ~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn--~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~  429 (764)
T PHA02716        358 TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT--AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLN  429 (764)
T ss_pred             HHHHhhhhhccccccccccChHHHHHHHHHCCCCCC--CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchh
Confidence            9875              368999999999999999  9999999999932   23457899999999988654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.8e-30  Score=259.42  Aligned_cols=210  Identities=25%  Similarity=0.243  Sum_probs=186.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~   95 (508)
                      -...++.|++.|+++.|+.|++. |.+++..|.+|.|+|||||.+ ++++++++|+++|+++|... ...+.||||+|++
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiN-Nrl~v~r~li~~gadvn~~g-G~l~stPLHWAar  121 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAIN-NRLDVARYLISHGADVNAIG-GVLGSTPLHWAAR  121 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHc-CcHHHHHHHHHcCCCccccC-CCCCCCcchHHHH
Confidence            35778999999999999999998 999999999999999999998 99999999999999999984 3778999999999


Q ss_pred             cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (508)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll  175 (508)
                      +|+..+|.+|+++|||++.+|.+|.||||+|++.|+.-+|-+|+.++++++  ++|.+|+|||| +|+.+++...+..|+
T Consensus       122 ~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d--~~D~~grTpLm-wAaykg~~~~v~~LL  198 (600)
T KOG0509|consen  122 NGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID--LRDNNGRTPLM-WAAYKGFALFVRRLL  198 (600)
T ss_pred             cCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC--CcCCCCCCHHH-HHHHhcccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999  99999999999 999999988888999


Q ss_pred             hCCCCCCCCC-ccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517          176 PCGTANPSKP-LRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (508)
Q Consensus       176 ~~g~~~~~~~-~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~  241 (508)
                      .-|+....++ .++.+++|.++..++...+. ++       ...+.+  ....|.+|+||+.+|.+.
T Consensus       199 ~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll-------~~g~~~--~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  199 KFGASLLLTDDNHGNTPLHWAVVGGNLTAVK-LL-------LEGGAD--LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HhcccccccccccCCchHHHHHhcCCcceEe-hh-------hhcCCc--ccccccCCCCHHHHHHHh
Confidence            9999888777 78999999998888854444 22       223556  777788899999999766

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.2e-29  Score=263.32  Aligned_cols=231  Identities=18%  Similarity=0.130  Sum_probs=199.9

Q ss_pred             ccCcccccCCchHHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCC-CHHHHHHHHHcCCCCcccCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAG---DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGANINAYRP   82 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g-~~~~v~~Ll~~ga~~n~~~~   82 (508)
                      +.+++.++..|.||||+|+..|   +.+++++|+++|+++|.+|..|.||||+|+.. | +.+++++|+++|++++.+  
T Consensus        37 ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~-~~~~~iv~lLl~~ga~in~~--  113 (471)
T PHA03095         37 GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYN-ATTLDVIKLLIKAGADVNAK--  113 (471)
T ss_pred             CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCcHHHHHHHHHcCCCCCCC--
Confidence            4567788999999999999998   99999999999999999999999999999998 7 699999999999999998  


Q ss_pred             CCCCCcHHHHHH--HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC--CHHHHHHHHHcCCcccccccccCCCCHH
Q 010517           83 GGRGGTPLHHAA--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFL  158 (508)
Q Consensus        83 d~~g~tpLh~A~--~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~ga~~~~~~~~~~g~tpL  158 (508)
                      |..|+||||+|+  ..++.+++++|+++|++++..|..|.||||+|+..+  +.+++++|++.|++++  ..|..|.|||
T Consensus       114 ~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~--~~d~~g~t~L  191 (471)
T PHA03095        114 DKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY--AVDDRFRSLL  191 (471)
T ss_pred             CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc--ccCCCCCCHH
Confidence            889999999999  567899999999999999999999999999999876  6899999999999998  6699999999


Q ss_pred             HHHHhh--cCCHHHHHHhhhCCCCCCCCCccccccccccccccChHH-HHHHHHhhhcCCCCCCCCCcceeccCCCcchh
Q 010517          159 EALAPQ--LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA-VIALWKAKIDEPKFHQPDPSLTIYDQATKIRY  235 (508)
Q Consensus       159 ~~~A~~--~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~-v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l  235 (508)
                      | .++.  .+..+++++|+++|++.+.++..+.+++|.++..+..+. ++.       .+...+.+  ++..|..|+|||
T Consensus       192 h-~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~-------~ll~~g~d--in~~d~~g~TpL  261 (471)
T PHA03095        192 H-HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL-------PLLIAGIS--INARNRYGQTPL  261 (471)
T ss_pred             H-HHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHH-------HHHHcCCC--CCCcCCCCCCHH
Confidence            9 6664  477899999999999999999999999999987765432 221       12233677  888999999999


Q ss_pred             HhhhhcCCChhHHHHHHH
Q 010517          236 KFASANEGDKHQLQWLDN  253 (508)
Q Consensus       236 ~~a~~~~~~~~~l~~l~~  253 (508)
                      |+|+.. +....++.|..
T Consensus       262 h~A~~~-~~~~~v~~LL~  278 (471)
T PHA03095        262 HYAAVF-NNPRACRRLIA  278 (471)
T ss_pred             HHHHHc-CCHHHHHHHHH
Confidence            999853 45566666663

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2e-30  Score=260.46  Aligned_cols=186  Identities=25%  Similarity=0.214  Sum_probs=173.3

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~   85 (508)
                      ...++..|.+|-|+|||||.+++++++++||++|+++|... .-|.||||||+++ |++.+|++|+++|||++.+  |.+
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~-G~~~vv~lLlqhGAdpt~~--D~~  144 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN-GHISVVDLLLQHGADPTLK--DKQ  144 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc-CcHHHHHHHHHcCCCCcee--cCC
Confidence            34567788999999999999999999999999999999998 6799999999998 9999999999999999999  899


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccc-cCCCCHHHHHHhh
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQ  164 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~-~~g~tpL~~~A~~  164 (508)
                      |.+|||+|+..|+.-+|-+||.+|++++.+|.+|+||||+|+.+|+...++.||+.++.+.  .+| .+|.|||| +|+.
T Consensus       145 G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~--~~d~~~g~TpLH-wa~~  221 (600)
T KOG0509|consen  145 GLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL--LTDDNHGNTPLH-WAVV  221 (600)
T ss_pred             CCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc--ccccccCCchHH-HHHh
Confidence            9999999999999999999999999999999999999999999999988999999999998  555 99999999 9999


Q ss_pred             cCCHHHHHHhhhCCCCCCCCCccccccccccccc
Q 010517          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (508)
Q Consensus       165 ~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~  198 (508)
                      .|+.+++.+|++.|++.+.++..++++...+.+.
T Consensus       222 ~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  222 GGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999999977888888888888888887777544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=264.98  Aligned_cols=227  Identities=21%  Similarity=0.202  Sum_probs=203.2

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHH-----HHHhCCCHHHHHHHHHcCCCCcccCCCC
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIV-----ACMDSGLINVAKTLIELGANINAYRPGG   84 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~-----Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~   84 (508)
                      .+.++..+.||||+|+..|+.++|++|+++|++++..+..|.||||+     |+.. ++.+++++|+++|++++..  |.
T Consensus        28 ~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~-~~~~iv~~Ll~~ga~i~~~--d~  104 (480)
T PHA03100         28 NDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLT-DVKEIVKLLLEYGANVNAP--DN  104 (480)
T ss_pred             chhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhh-chHHHHHHHHHCCCCCCCC--CC
Confidence            34567889999999999999999999999999999999999999999     9997 9999999999999999988  88


Q ss_pred             CCCcHHHHHH--HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC--CHHHHHHHHHcCCcccccccccCCCCHHHH
Q 010517           85 RGGTPLHHAA--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFLEA  160 (508)
Q Consensus        85 ~g~tpLh~A~--~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~  160 (508)
                      .|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++  .++..|.|||| 
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din--~~d~~g~tpL~-  181 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN--AKNRYGYTPLH-  181 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc--cccCCCCCHHH-
Confidence            9999999999  999999999999999999999999999999999999  9999999999999999  88999999999 


Q ss_pred             HHhhcCCHHHHHHhhhCCCCCCCCCccc------cccccccccccC--hHHHHHHHHhhhcCCCCCCCCCcceeccCCCc
Q 010517          161 LAPQLMSRKIWVVVIPCGTANPSKPLRF------ELVIYPSLQDVQ--PRAVIALWKAKIDEPKFHQPDPSLTIYDQATK  232 (508)
Q Consensus       161 ~A~~~~~~~i~~~Ll~~g~~~~~~~~~~------~~~l~~a~~~~~--~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~  232 (508)
                      +|+..|+.+++++|+++|++.+..+..+      .++++.++..+.  .+.+..|+        ..|.+  ++..|..|.
T Consensus       182 ~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll--------~~g~d--in~~d~~g~  251 (480)
T PHA03100        182 IAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLL--------SYGVP--INIKDVYGF  251 (480)
T ss_pred             HHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHH--------HcCCC--CCCCCCCCC
Confidence            9999999999999999999998877666      777888877666  44444333        23677  888999999


Q ss_pred             chhHhhhhcCCChhHHHHHHH
Q 010517          233 IRYKFASANEGDKHQLQWLDN  253 (508)
Q Consensus       233 t~l~~a~~~~~~~~~l~~l~~  253 (508)
                      ||||+|+.. +....++.|..
T Consensus       252 TpL~~A~~~-~~~~iv~~Ll~  271 (480)
T PHA03100        252 TPLHYAVYN-NNPEFVKYLLD  271 (480)
T ss_pred             CHHHHHHHc-CCHHHHHHHHH
Confidence            999999864 44666676663

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.4e-29  Score=262.34  Aligned_cols=230  Identities=19%  Similarity=0.170  Sum_probs=203.8

Q ss_pred             ccCcccccCCchHHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCChHHHHHHHh-CCCHHHHHHHHHcCCCCcccCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAG-DVDAIRALRSQGASLEWMDKEGKTPLIVACMD-SGLINVAKTLIELGANINAYRPGG   84 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~-~g~~~~v~~Ll~~ga~~n~~~~d~   84 (508)
                      +.++|.++..|.||||+|+..| +.+++++|+++|++++.+|..|.||||+|+.. .++.+++++|+++|++++.+  |.
T Consensus        73 Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~--d~  150 (471)
T PHA03095         73 GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL--DL  150 (471)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCcc--CC
Confidence            4567888899999999999999 59999999999999999999999999999932 26889999999999999998  88


Q ss_pred             CCCcHHHHHHHcC--CHHHHHHHHHCCCCccccCCCCCcHHHHHHHh--CCHHHHHHHHHcCCcccccccccCCCCHHHH
Q 010517           85 RGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIK--GHINVVRAIESHICYFCGWLREFYGPSFLEA  160 (508)
Q Consensus        85 ~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~  160 (508)
                      .|.||||+|+..+  +.+++++|+++|++++..|..|.||||+++..  ++.+++++|++.|++++  .+|..|.|||| 
T Consensus       151 ~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~--~~d~~g~tpLh-  227 (471)
T PHA03095        151 YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA--ATDMLGNTPLH-  227 (471)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-
Confidence            9999999999866  68999999999999999999999999999875  78899999999999999  99999999999 


Q ss_pred             HHhhcCCH--HHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhh
Q 010517          161 LAPQLMSR--KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFA  238 (508)
Q Consensus       161 ~A~~~~~~--~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a  238 (508)
                      +|+..++.  .+++.|+..|++++..+..+.+++|.|+..+....+..|+.        .|+|  +++.|..|+||+++|
T Consensus       228 ~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~--------~gad--~n~~~~~g~tpl~~A  297 (471)
T PHA03095        228 SMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA--------LGAD--INAVSSDGNTPLSLM  297 (471)
T ss_pred             HHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH--------cCCC--CcccCCCCCCHHHHH
Confidence            88888874  68889999999999999999999999999888766665543        3788  888999999999999


Q ss_pred             hhcCCChhHHHHHH
Q 010517          239 SANEGDKHQLQWLD  252 (508)
Q Consensus       239 ~~~~~~~~~l~~l~  252 (508)
                      ... +....++.|.
T Consensus       298 ~~~-~~~~~v~~LL  310 (471)
T PHA03095        298 VRN-NNGRAVRAAL  310 (471)
T ss_pred             HHh-CCHHHHHHHH
Confidence            754 4455555555

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=6.4e-29  Score=256.61  Aligned_cols=220  Identities=15%  Similarity=0.086  Sum_probs=188.5

Q ss_pred             chHHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHH
Q 010517           17 KDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (508)
Q Consensus        17 g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~   94 (508)
                      +.++||.++.  .++.++|++|+++|+++|.+|.+|.||||+|+.. |+.++|++|+++|+++|.+  |..|+||||+|+
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~-g~~eiv~lLL~~GAdin~~--d~~g~TpLh~A~  113 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKI-NNNRIVAMLLTHGADPNAC--DKQHKTPLYYLS  113 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHH
Confidence            4689998774  4578999999999999999999999999999998 9999999999999999998  889999999999


Q ss_pred             HcC--CHHHHHHHHHCCCCccc-cCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcC--CHH
Q 010517           95 KRG--LEPTVRLLLSCGANALV-RNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM--SRK  169 (508)
Q Consensus        95 ~~g--~~~~v~~Ll~~ga~~~~-~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~--~~~  169 (508)
                      ..+  ..+++++|+++|++++. .|..|.|||| |+..++.+++++|++.|++++  .+|..|+|||| +|+..+  +.+
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~--~~d~~G~t~Lh-~A~~~~~~~~~  189 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR--IVDKFGKNHIH-RHLMSDNPKAS  189 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc--ccCCCCCCHHH-HHHHhcCCCHH
Confidence            866  47899999999999995 6899999997 667799999999999999999  99999999999 776544  468


Q ss_pred             HHHHhhhCCCCCCCCCccccccccccccccCh-HHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHH
Q 010517          170 IWVVVIPCGTANPSKPLRFELVIYPSLQDVQP-RAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQL  248 (508)
Q Consensus       170 i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~-~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l  248 (508)
                      ++++|+++|++++.++..+.+++|.++..+.. ..++.++.        .+++  ++.+|..|+||||+|+........+
T Consensus       190 ~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl--------~gad--in~~d~~G~TpLh~A~~~~~~~~~~  259 (446)
T PHA02946        190 TISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL--------PSTD--VNKQNKFGDSPLTLLIKTLSPAHLI  259 (446)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHH--------cCCC--CCCCCCCCCCHHHHHHHhCChHHHH
Confidence            99999999999999999999999999976532 22222211        2567  8899999999999999876655556


Q ss_pred             HHHHH
Q 010517          249 QWLDN  253 (508)
Q Consensus       249 ~~l~~  253 (508)
                      +.|..
T Consensus       260 ~~Ll~  264 (446)
T PHA02946        260 NKLLS  264 (446)
T ss_pred             HHHHh
Confidence            65653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.3e-29  Score=272.05  Aligned_cols=233  Identities=15%  Similarity=0.130  Sum_probs=142.4

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHH---------------
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI---------------   71 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll---------------   71 (508)
                      +.++|.+|..|.||||+|+..|+.++|++|+++|++++..+.+|.||||+|+.. ++.+++++|+               
T Consensus       168 Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~-~~~~ivk~Ll~~~~~~~~~~~~L~~  246 (682)
T PHA02876        168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS-KNIDTIKAIIDNRSNINKNDLSLLK  246 (682)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHc-CCHHHHHHHHhcCCCCCCCcHHHHH
Confidence            456778899999999999999999999999999999887776666666666654 5554444333               


Q ss_pred             --------------HcCCCCcccCCCCCCCcHHHHHHHcCCH-HHHHHHHHCCCCccccCCCCCcHHHHHHHhC-CHHHH
Q 010517           72 --------------ELGANINAYRPGGRGGTPLHHAAKRGLE-PTVRLLLSCGANALVRNDDCHTALGVARIKG-HINVV  135 (508)
Q Consensus        72 --------------~~ga~~n~~~~d~~g~tpLh~A~~~g~~-~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g-~~~~v  135 (508)
                                    +.|++++..  |..|+||||+|+..++. +++++|++.|++++.+|..|.||||+|+..| +.+++
T Consensus       247 ai~~~~~~~~~~Ll~~g~~vn~~--d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v  324 (682)
T PHA02876        247 AIRNEDLETSLLLYDAGFSVNSI--DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENI  324 (682)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHH
Confidence                          333344444  44566666666665554 3555666666666555555666666665555 24555


Q ss_pred             HHHHHcCCcccc--------------------------------cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCC
Q 010517          136 RAIESHICYFCG--------------------------------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPS  183 (508)
Q Consensus       136 ~~Ll~~ga~~~~--------------------------------~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~  183 (508)
                      ++|+..|++++.                                +.+|..|.|||| +|+..++.+++++|+++|++++.
T Consensus       325 ~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh-~Aa~~~~~~iv~~Ll~~gad~~~  403 (682)
T PHA02876        325 RTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIH-YAAVRNNVVIINTLLDYGADIEA  403 (682)
T ss_pred             HHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCccc
Confidence            555555554440                                044455555555 55555555555555555555554


Q ss_pred             CCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHH
Q 010517          184 KPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       184 ~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      .+..+.++++.++.......++       ..+...+.+  ++.+|..|+||||+|+........++.|.
T Consensus       404 ~~~~g~T~Lh~A~~~~~~~~~v-------k~Ll~~gad--in~~d~~G~TpLh~Aa~~~~~~~iv~lLl  463 (682)
T PHA02876        404 LSQKIGTALHFALCGTNPYMSV-------KTLIDRGAN--VNSKNKDLSTPLHYACKKNCKLDVIEMLL  463 (682)
T ss_pred             cCCCCCchHHHHHHcCCHHHHH-------HHHHhCCCC--CCcCCCCCChHHHHHHHhCCcHHHHHHHH
Confidence            4444445555444333322222       223345677  78889999999999987555555566555

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=253.78  Aligned_cols=220  Identities=16%  Similarity=0.070  Sum_probs=195.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHc
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~   96 (508)
                      .+++||.|+..|+.++|++|+++|++++.++..|.||||+|+.. |+.+++++|+++|++++..  +..+.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~--~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKF-RDSEAIKLLMKHGAIPDVK--YPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccc--CCCcccHHHHHHHC
Confidence            57899999999999999999999999999999999999999998 9999999999999999987  77899999999999


Q ss_pred             CCHHHHHHHHHCCCCcc-ccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517           97 GLEPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (508)
Q Consensus        97 g~~~~v~~Ll~~ga~~~-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll  175 (508)
                      |+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..|+.+++++|+
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~--~~~~~g~tpLh-~A~~~~~~~~v~~Ll  155 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD--IPNTDKFSPLH-LAVMMGDIKGIELLI  155 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence            99999999999998764 456789999999999999999999999999999  89999999999 999999999999999


Q ss_pred             hCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCc-chhHhhhhcCCChhHHHHHHH
Q 010517          176 PCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATK-IRYKFASANEGDKHQLQWLDN  253 (508)
Q Consensus       176 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~-t~l~~a~~~~~~~~~l~~l~~  253 (508)
                      ++|++.+..+..+.++++.++..+..+.+..|+        ..|++  ++..+..|. |++++|.. .+....++.|..
T Consensus       156 ~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll--------~~ga~--~n~~~~~~~~t~l~~A~~-~~~~~iv~~Ll~  223 (413)
T PHA02875        156 DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLL--------DSGAN--IDYFGKNGCVAALCYAIE-NNKIDIVRLFIK  223 (413)
T ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH--------hCCCC--CCcCCCCCCchHHHHHHH-cCCHHHHHHHHH
Confidence            999999999999999999999988865554433        34777  666677664 77887775 456667777763

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.4e-28  Score=227.33  Aligned_cols=177  Identities=16%  Similarity=0.131  Sum_probs=158.5

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhC-CCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~-g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~   92 (508)
                      .+.+.||||+|+..|+.++|+.|++.   ++..|..|.||||+|+..+ ++.+++++|+++|+++|.++ +..|+||||+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~-~~~g~TpLh~   93 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKT-RDNNLSALHH   93 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccC-CCCCCCHHHH
Confidence            45679999999999999999999985   5678999999999999752 48999999999999999883 3589999999


Q ss_pred             HHHc---CCHHHHHHHHHCCCCccccCCCCCcHHHHHHH--hCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517           93 AAKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARI--KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (508)
Q Consensus        93 A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~--~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~  167 (508)
                      |+..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|++.|++++  .+|.+|.||||.++...++
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin--~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL--NKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccCCCCcHHHHHHHhcCC
Confidence            8864   47999999999999999999999999999986  468999999999999999  8999999999944677889


Q ss_pred             HHHHHHhhhCCCCCCCCCccccccccccc
Q 010517          168 RKIWVVVIPCGTANPSKPLRFELVIYPSL  196 (508)
Q Consensus       168 ~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~  196 (508)
                      .+++++|+++|++++.++..+.++++.+.
T Consensus       172 ~~iv~~Ll~~Gadi~~~d~~g~tpl~la~  200 (209)
T PHA02859        172 KKIFDFLTSLGIDINETNKSGYNCYDLIK  200 (209)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            99999999999999999888888877765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.6e-28  Score=266.11  Aligned_cols=220  Identities=20%  Similarity=0.134  Sum_probs=196.1

Q ss_pred             cCcccccCCchHHHHHHHHcCCH-HHHHHHHHcCCCCCccCCCCChHHHHHHHhCC-CHHHHHHHHHcCCCCcccCCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDV-DAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGANINAYRPGGR   85 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~-~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g-~~~~v~~Ll~~ga~~n~~~~d~~   85 (508)
                      ..++.+|..|.||||+|+..|+. +++++|+++|++++.+|.+|.||||+|+.. | ..+++++|+..|++++..  |..
T Consensus       264 ~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~-g~~~~~v~~Ll~~gadin~~--d~~  340 (682)
T PHA02876        264 FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKN-GYDTENIRTLIMLGADVNAA--DRL  340 (682)
T ss_pred             CCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh-CCCHHHHHHHHHcCCCCCCc--ccC
Confidence            45677788999999999999997 699999999999999999999999999998 6 699999999999999998  889


Q ss_pred             CCcHHHHHHHc-CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhh
Q 010517           86 GGTPLHHAAKR-GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (508)
Q Consensus        86 g~tpLh~A~~~-g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~  164 (508)
                      |+||||+|+.. ++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|.|||| +|+.
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~--~~~~~g~T~Lh-~A~~  417 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE--ALSQKIGTALH-FALC  417 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCCchHH-HHHH
Confidence            99999999985 57899999999999999999999999999999999999999999999999  88999999999 7765


Q ss_pred             cC-CHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcC
Q 010517          165 LM-SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (508)
Q Consensus       165 ~~-~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~  242 (508)
                      .+ ...++++|+++|++++.++..+.++++.|+..+....+..++       ...|+|  ++.+|..|.||+++|....
T Consensus       418 ~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lL-------l~~Gad--~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        418 GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEML-------LDNGAD--VNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             cCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHH-------HHCCCC--CCCCCCCCCCHHHHHHHhC
Confidence            54 467899999999999999999999999998766443343333       234888  8899999999999998654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.2e-28  Score=255.60  Aligned_cols=160  Identities=22%  Similarity=0.271  Sum_probs=149.4

Q ss_pred             HHHHHHHcCCCCCccCCC-CChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 010517           32 AIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA  110 (508)
Q Consensus        32 ~v~~Ll~~g~~~~~~d~~-G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga  110 (508)
                      ++++|+++|++++.+|.. |.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|++.|+
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~-~~~~iv~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~iv~~Ll~~ga  225 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATEN-KDQRLTELLLSYGANVNIP--DKTNNSPLHHAVKHYNKPIVHILLENGA  225 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhC-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            677788889999999998 99999999998 9999999999999999998  8899999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHh-CCHHHHHHHHHcCCccccccccc-CCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccc
Q 010517          111 NALVRNDDCHTALGVARIK-GHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRF  188 (508)
Q Consensus       111 ~~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~-~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~  188 (508)
                      +++.+|..|.||||+|+.. ++.+++++|+++|++++  .++. .|.|||| +|  .++.+++++|+++|++++..+..+
T Consensus       226 ~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn--~~~~~~g~TpLh-~A--~~~~~~v~~Ll~~gadin~~d~~g  300 (477)
T PHA02878        226 STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN--AKSYILGLTALH-SS--IKSERKLKLLLEYGADINSLNSYK  300 (477)
T ss_pred             CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC--ccCCCCCCCHHH-HH--ccCHHHHHHHHHCCCCCCCcCCCC
Confidence            9999999999999999976 78999999999999999  6665 7999999 88  578899999999999999999999


Q ss_pred             ccccccccccc
Q 010517          189 ELVIYPSLQDV  199 (508)
Q Consensus       189 ~~~l~~a~~~~  199 (508)
                      .++++.++...
T Consensus       301 ~TpL~~A~~~~  311 (477)
T PHA02878        301 LTPLSSAVKQY  311 (477)
T ss_pred             CCHHHHHHHHc
Confidence            99999988644

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.8e-27  Score=250.73  Aligned_cols=228  Identities=17%  Similarity=0.161  Sum_probs=172.9

Q ss_pred             ccCcccccCCchHHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhC-----CCHHHHHHHHHcCCCCcc
Q 010517            7 SMNQHQQRQSKDELLYQWVIA--GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-----GLINVAKTLIELGANINA   79 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~--g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~-----g~~~~v~~Ll~~ga~~n~   79 (508)
                      +.++|.+ ..|.|+||+++..  ++.++|++||++|+|+|.++ .+.||||.|+..+     ++.+++++|+++|+++|.
T Consensus        26 GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~  103 (494)
T PHA02989         26 GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINL  103 (494)
T ss_pred             CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCC
Confidence            3455666 5688988776644  37899999999999999886 5789999987641     357899999999999999


Q ss_pred             cCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCc-cccCCCCCcHHHHHHHh--CCHHHHHHHHHcCCcccccc-ccc
Q 010517           80 YRPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANA-LVRNDDCHTALGVARIK--GHINVVRAIESHICYFCGWL-REF  152 (508)
Q Consensus        80 ~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~-~~~d~~g~TpLh~A~~~--g~~~~v~~Ll~~ga~~~~~~-~~~  152 (508)
                      +  |..|.||||.|+..   |+.+++++|+++|+|+ +.+|..|.||||+|+..  ++.+++++|+++|++++  . .+.
T Consensus       104 ~--d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~--~~~~~  179 (494)
T PHA02989        104 K--TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLF--EKTSL  179 (494)
T ss_pred             C--CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--ccccc
Confidence            8  88999999988765   6789999999999999 78999999999998764  68899999999999998  5 678


Q ss_pred             CCCCHHHHHHhhc----CCHHHHHHhhhCCCCCCCCCcccc--------------------------------------c
Q 010517          153 YGPSFLEALAPQL----MSRKIWVVVIPCGTANPSKPLRFE--------------------------------------L  190 (508)
Q Consensus       153 ~g~tpL~~~A~~~----~~~~i~~~Ll~~g~~~~~~~~~~~--------------------------------------~  190 (508)
                      .|.|||| ++...    ++.+++++|+++|++++..+..++                                      +
T Consensus       180 ~g~tpL~-~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~T  258 (494)
T PHA02989        180 YGLTPMN-IYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFN  258 (494)
T ss_pred             cCCChHH-HHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCC
Confidence            8999999 77654    488999999999998876664333                                      3


Q ss_pred             cccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHH
Q 010517          191 VIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       191 ~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      +++.++..+..+.+        ..+...|+|  ++.+|..|.|||++|... +....++.++
T Consensus       259 pL~~Aa~~~~~~~v--------~~LL~~Gad--in~~d~~G~TpL~~A~~~-~~~~iv~~LL  309 (494)
T PHA02989        259 PLLISAKVDNYEAF--------NYLLKLGDD--IYNVSKDGDTVLTYAIKH-GNIDMLNRIL  309 (494)
T ss_pred             HHHHHHHhcCHHHH--------HHHHHcCCC--ccccCCCCCCHHHHHHHc-CCHHHHHHHH
Confidence            33333333332222        223344667  677777777777777654 3444455554

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.2e-27  Score=247.70  Aligned_cols=220  Identities=18%  Similarity=0.167  Sum_probs=133.5

Q ss_pred             chHHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHh----CCCHHHHHHHHHcCCCCcccCCCCCCCcHH
Q 010517           17 KDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD----SGLINVAKTLIELGANINAYRPGGRGGTPL   90 (508)
Q Consensus        17 g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~----~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpL   90 (508)
                      |.|+++.+..  .++.++|++|+++|+|+|.+|..|.||||+|+.+    .++.+++++|+++|+++|.+  |..|+|||
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~--d~~G~TpL  113 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKK--NSDGETPL  113 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCC--CCCcCcHH
Confidence            4455443332  2356666666666666666666666666665531    13456666666666666665  55666666


Q ss_pred             HHHHHcC---CHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC---HHHHHHHHHcCCccccccc-ccCCCCHHHHHHh
Q 010517           91 HHAAKRG---LEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHICYFCGWLR-EFYGPSFLEALAP  163 (508)
Q Consensus        91 h~A~~~g---~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~-~~~g~tpL~~~A~  163 (508)
                      |+|+..+   +.+++++|+++|++++..|..|.||||+|+..++   .+++++|+++|++++  .+ +..|.|||| .+.
T Consensus       114 h~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin--~~~~~~~~t~Lh-~~~  190 (489)
T PHA02798        114 YCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN--THNNKEKYDTLH-CYF  190 (489)
T ss_pred             HHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc--cccCcCCCcHHH-HHH
Confidence            6666653   4566666666666666666666666666666665   666666666666665  44 235666666 443


Q ss_pred             hc----CCHHHHHHhhhCCCCC---------------------------------------CCCCccccccccccccccC
Q 010517          164 QL----MSRKIWVVVIPCGTAN---------------------------------------PSKPLRFELVIYPSLQDVQ  200 (508)
Q Consensus       164 ~~----~~~~i~~~Ll~~g~~~---------------------------------------~~~~~~~~~~l~~a~~~~~  200 (508)
                      ..    ++.+++++|+++|+++                                       +.++..+.+++|.|+..+.
T Consensus       191 ~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~  270 (489)
T PHA02798        191 KYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNN  270 (489)
T ss_pred             HhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCc
Confidence            32    3556666666665544                                       4444556677777776666


Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHH
Q 010517          201 PRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       201 ~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      .+.+..|        ...|+|  ++.+|..|+|||++|... +....++.+.
T Consensus       271 ~~~v~~L--------L~~GAd--in~~d~~G~TpL~~A~~~-~~~~iv~~lL  311 (489)
T PHA02798        271 RKIFEYL--------LQLGGD--INIITELGNTCLFTAFEN-ESKFIFNSIL  311 (489)
T ss_pred             HHHHHHH--------HHcCCc--ccccCCCCCcHHHHHHHc-CcHHHHHHHH
Confidence            4444433        344788  888999999999998753 3344444443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=9.4e-27  Score=238.17  Aligned_cols=230  Identities=17%  Similarity=0.091  Sum_probs=170.6

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHH-----cCCCCcccCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE-----LGANINAYRP   82 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~-----~ga~~n~~~~   82 (508)
                      .++|..|+.|.||||+|+..++.|..+.|++.|+++-..|.+|.+|+|.|++. |..|+.++.+.     .+..+|..  
T Consensus       145 ~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s-~s~e~mEi~l~~~g~~r~~~in~~--  221 (929)
T KOG0510|consen  145 ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARS-GSKECMEIFLPEHGYERQTHINFD--  221 (929)
T ss_pred             CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHh-cchhhhhhhhccccchhhcccccc--
Confidence            45666777777777777777777766777777777777777777777777776 77777777776     55666766  


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCC---------------ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccc
Q 010517           83 GGRGGTPLHHAAKRGLEPTVRLLLSCGAN---------------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG  147 (508)
Q Consensus        83 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---------------~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~  147 (508)
                      +..|.||||.|+..|+.++++.+|+.|+.               ++..|++|.||||+|++.|+.++++.|+..|++++ 
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~-  300 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN-  300 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc-
Confidence            66788888888888888888888877643               34568888888888888888888888888888888 


Q ss_pred             cccccCCCCHHHHHHhhcCCHHHHHHhhh-CC-CCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCc-c
Q 010517          148 WLREFYGPSFLEALAPQLMSRKIWVVVIP-CG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPS-L  224 (508)
Q Consensus       148 ~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~-~g-~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~-i  224 (508)
                       .++.++.|||| .|+..|+..+++.|++ .+ ...+..|..+.+++|.+++.++.+.+..|++..        ++.. .
T Consensus       301 -~kn~d~~spLH-~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G--------A~~~~~  370 (929)
T KOG0510|consen  301 -SKNKDEESPLH-FAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG--------ALFLNM  370 (929)
T ss_pred             -ccCCCCCCchH-HHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC--------hhhhcc
Confidence             88888888888 8888888888888887 33 334567778888888888887766666554432        2210 1


Q ss_pred             eeccCCCcchhHhhhhcCCChhHHHHHH
Q 010517          225 TIYDQATKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       225 ~~~d~~~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      ...|.+|.|+||+|+. ++..+.++.|.
T Consensus       371 ~e~D~dg~TaLH~Aa~-~g~~~av~~Li  397 (929)
T KOG0510|consen  371 SEADSDGNTALHLAAK-YGNTSAVQKLI  397 (929)
T ss_pred             cccccCCchhhhHHHH-hccHHHHHHHH
Confidence            1348889999999874 45555566655

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-26  Score=237.70  Aligned_cols=231  Identities=19%  Similarity=0.159  Sum_probs=193.2

Q ss_pred             CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t   88 (508)
                      +.+.++.++.+|||+|+..|+.++++.|+++|+|+|..|..|.||||+||.. ++.|..++|++.|+++-..  |.+|++
T Consensus       113 d~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~-~~~E~~k~Li~~~a~~~K~--~~~~~~  189 (929)
T KOG0510|consen  113 DTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARK-NKVEAKKELINKGADPCKS--DIDGNF  189 (929)
T ss_pred             CCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhc-ChHHHHHHHHhcCCCCCcc--cCcCCc
Confidence            3445677788888888888888888888888888888888888888888886 8888778888888888776  788888


Q ss_pred             HHHHHHHcCCHHHHHHHHH-----CCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccc-------------ccc
Q 010517           89 PLHHAAKRGLEPTVRLLLS-----CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG-------------WLR  150 (508)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~-----~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~-------------~~~  150 (508)
                      |+|.|++.|..+++++.+.     .+..+|..|..|.||||.|+..|+.++++.+|+.|..+..             +..
T Consensus       190 ~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~  269 (929)
T KOG0510|consen  190 PIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDE  269 (929)
T ss_pred             hHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcc
Confidence            8888888888888888887     5677888899999999999999999999999998865431             356


Q ss_pred             ccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCC
Q 010517          151 EFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA  230 (508)
Q Consensus       151 ~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~  230 (508)
                      |.+|.|||| +|++.|+.+.++.|+..|++++.++...++++|.|+.++.-.++..|+..        ....+++..|..
T Consensus       270 d~dg~tpLH-~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~--------~~~rllne~D~~  340 (929)
T KOG0510|consen  270 DNDGCTPLH-YAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQE--------SDTRLLNESDLH  340 (929)
T ss_pred             cccCCchHH-HHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhC--------cCcccccccccc
Confidence            889999999 99999999999999999999999999999999999999999988887762        122347778899


Q ss_pred             CcchhHhhhhcCCChhHHHHHH
Q 010517          231 TKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       231 ~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      |.||+|+|+ .++.....+-|.
T Consensus       341 g~tpLHlaa-~~gH~~v~qlLl  361 (929)
T KOG0510|consen  341 GMTPLHLAA-KSGHDRVVQLLL  361 (929)
T ss_pred             CCCchhhhh-hcCHHHHHHHHH
Confidence            999999998 445555555554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.1e-26  Score=214.26  Aligned_cols=152  Identities=14%  Similarity=0.109  Sum_probs=137.8

Q ss_pred             cccccCCchHHHHHHHHcC--CHHHHHHHHHcCCCCCccC-CCCChHHHHHHHh--CCCHHHHHHHHHcCCCCcccCCCC
Q 010517           10 QHQQRQSKDELLYQWVIAG--DVDAIRALRSQGASLEWMD-KEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPGG   84 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g--~~~~v~~Ll~~g~~~~~~d-~~G~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~n~~~~d~   84 (508)
                      ++..|..|.||||+|+..+  +.++|++|+++|+++|.++ ..|.||||+|+..  .++.+++++|+++|+++|.+  |.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~--d~  121 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEE--DE  121 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCc--CC
Confidence            5677899999999999855  8999999999999999997 4899999998864  14799999999999999998  88


Q ss_pred             CCCcHHHHHHH--cCCHHHHHHHHHCCCCccccCCCCCcHHHH-HHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 010517           85 RGGTPLHHAAK--RGLEPTVRLLLSCGANALVRNDDCHTALGV-ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL  161 (508)
Q Consensus        85 ~g~tpLh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~-A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~  161 (508)
                      .|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++  .+|..|+|||| +
T Consensus       122 ~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~--~~d~~g~tpl~-l  198 (209)
T PHA02859        122 DGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN--ETNKSGYNCYD-L  198 (209)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-H
Confidence            99999999986  468999999999999999999999999996 567889999999999999999  99999999999 7


Q ss_pred             HhhcC
Q 010517          162 APQLM  166 (508)
Q Consensus       162 A~~~~  166 (508)
                      |+..+
T Consensus       199 a~~~~  203 (209)
T PHA02859        199 IKFRN  203 (209)
T ss_pred             Hhhhh
Confidence            76653

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=3.7e-27  Score=220.87  Aligned_cols=169  Identities=25%  Similarity=0.374  Sum_probs=152.9

Q ss_pred             cccccCcccccCCchHHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCChHHHHHHHh----CCCHHHHHHHHHcCCCCc
Q 010517            4 SLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQG-ASLEWMDKEGKTPLIVACMD----SGLINVAKTLIELGANIN   78 (508)
Q Consensus         4 ~~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~d~~G~TpLh~Aa~~----~g~~~~v~~Ll~~ga~~n   78 (508)
                      .+-.+-+|.-|.+|+|+||||+.++++++|+.||+.| +++|.+|+-|+||+|+++..    ..+.++|..|.+.| |+|
T Consensus       255 ~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVN  333 (452)
T KOG0514|consen  255 PLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVN  333 (452)
T ss_pred             HHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccc
Confidence            3344567888999999999999999999999999988 58999999999999999864    14678999999996 888


Q ss_pred             ccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc-CCcccccccccCCCCH
Q 010517           79 AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGPSF  157 (508)
Q Consensus        79 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~g~tp  157 (508)
                      .+- ...|+|+||+|+.+|+.++|+.||..|+|+|.+|.+|.|+|+.|+.+||.||+++||.. ++|+.  +.|.+|.|+
T Consensus       334 aKA-sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s--LtD~DgSTA  410 (452)
T KOG0514|consen  334 AKA-SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS--LTDVDGSTA  410 (452)
T ss_pred             hhh-hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccce--eecCCCchh
Confidence            874 67899999999999999999999999999999999999999999999999999999876 47777  899999999


Q ss_pred             HHHHHhhcCCHHHHHHhhhC
Q 010517          158 LEALAPQLMSRKIWVVVIPC  177 (508)
Q Consensus       158 L~~~A~~~~~~~i~~~Ll~~  177 (508)
                      |+ +|...||.+|..+|..+
T Consensus       411 l~-IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  411 LS-IALEAGHREIAVMLYAH  429 (452)
T ss_pred             hh-hHHhcCchHHHHHHHHH
Confidence            99 99999999999877654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=9.1e-27  Score=224.78  Aligned_cols=160  Identities=25%  Similarity=0.302  Sum_probs=152.7

Q ss_pred             cccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh   91 (508)
                      -....|-+||..|+..||+++|+.|+++|+++|.......|||--||.. |++++|++|+++|+|+++.  |.+|.|.||
T Consensus        79 ge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfD-G~leivKyLvE~gad~~Ia--nrhGhTcLm  155 (615)
T KOG0508|consen   79 GETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFD-GHLEIVKYLVEHGADPEIA--NRHGHTCLM  155 (615)
T ss_pred             CcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhc-chhHHHHHHHHcCCCCccc--ccCCCeeEE
Confidence            3366789999999999999999999999999999999999999999997 9999999999999999998  899999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHH
Q 010517           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (508)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~  171 (508)
                      +|+.+||.+|+++|++.|+|+|.++..|.|+||.++..|+++++++|+++|+.+.   +|.+|.|||. .|+..|+.+++
T Consensus       156 Ia~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~---~d~~GmtPL~-~Aa~tG~~~iV  231 (615)
T KOG0508|consen  156 IACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID---VDGHGMTPLL-LAAVTGHTDIV  231 (615)
T ss_pred             eeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee---ecCCCCchHH-HHhhhcchHHH
Confidence            9999999999999999999999999999999999999999999999999999886   7888999999 99999999999


Q ss_pred             HHhhhCC
Q 010517          172 VVVIPCG  178 (508)
Q Consensus       172 ~~Ll~~g  178 (508)
                      ++|+...
T Consensus       232 e~L~~~~  238 (615)
T KOG0508|consen  232 ERLLQCE  238 (615)
T ss_pred             HHHhcCC
Confidence            9999743

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=5.7e-26  Score=227.37  Aligned_cols=168  Identities=13%  Similarity=0.019  Sum_probs=151.4

Q ss_pred             cccCCchHHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCccc-CC---CCC
Q 010517           12 QQRQSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RP---GGR   85 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~-~~---d~~   85 (508)
                      .++.+++|+||+++.  .|+.++|++||++|+|++..  ++.||||+|+.. ++.+++++|+++|++.+.. +.   +..
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~-~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK-KESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc-CcHHHHHHHHhcCCcccccccchhhhhh
Confidence            578889999999999  99999999999999999884  458999999997 9999999999999854322 10   134


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~  165 (508)
                      |.|++|.|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN--~~d~~G~TpLh-~Aa~~  264 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN--AVMSNGYTCLD-VAVDR  264 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHc
Confidence            7899999999999999999999999999999999999999999999999999999999999  99999999999 89888


Q ss_pred             C--------CHHHHHHhhhCCCCCCCCC
Q 010517          166 M--------SRKIWVVVIPCGTANPSKP  185 (508)
Q Consensus       166 ~--------~~~i~~~Ll~~g~~~~~~~  185 (508)
                      |        +.+++++|+++|++++...
T Consensus       265 g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        265 GSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CCcccccccHHHHHHHHHhCCCCCCchh
Confidence            7        4699999999999887544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=6.7e-27  Score=225.68  Aligned_cols=188  Identities=23%  Similarity=0.228  Sum_probs=169.5

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHH-cCCCCCc--------cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCC
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRS-QGASLEW--------MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~--------~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~   84 (508)
                      +.+|.|||..||++||.++|++|++ -++++..        ...+|-+||-.|+.. ||+++|++|+++|+++|..  ..
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaA-GHl~vVk~L~~~ga~VN~t--T~  115 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAA-GHLEVVKLLLRRGASVNDT--TR  115 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhcc-CcHHHHHHHHHhcCccccc--cc
Confidence            5678899999999999999999999 4555432        245788998888876 9999999999999999976  55


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhh
Q 010517           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (508)
Q Consensus        85 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~  164 (508)
                      ...|||--||.-|+.++|++|+++|+|++..|..|.|.||+|+.+||.+|+++|++.|+|+|  .++..|.|+|| .|++
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn--~ks~kGNTALH-~caE  192 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN--AKSYKGNTALH-DCAE  192 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc--hhcccCchHHH-hhhh
Confidence            66799999999999999999999999999999999999999999999999999999999999  89999999999 9999


Q ss_pred             cCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010517          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (508)
Q Consensus       165 ~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~  208 (508)
                      .|+.+++++|+++|+.+.... .+.+++..+...+..+.+..|+
T Consensus       193 sG~vdivq~Ll~~ga~i~~d~-~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  193 SGSVDIVQLLLKHGAKIDVDG-HGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             cccHHHHHHHHhCCceeeecC-CCCchHHHHhhhcchHHHHHHh
Confidence            999999999999999886554 6899999998888887777665

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=8e-26  Score=238.29  Aligned_cols=199  Identities=13%  Similarity=0.120  Sum_probs=153.9

Q ss_pred             ccCcccccCCchHHHHHHHH------cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhC--CCHHHHHHHHHcCCCC-
Q 010517            7 SMNQHQQRQSKDELLYQWVI------AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS--GLINVAKTLIELGANI-   77 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~------~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~--g~~~~v~~Ll~~ga~~-   77 (508)
                      +.++|.++ .+.||||.|+.      .|+.++|++||++|+|+|.+|..|.||||.|+..+  ++.+++++|+++|+++ 
T Consensus        60 GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin  138 (494)
T PHA02989         60 GADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN  138 (494)
T ss_pred             CCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc
Confidence            34444444 46788887764      46778888888888888888888888888776531  4678888888888888 


Q ss_pred             cccCCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCccc-cCCCCCcHHHHHHHhC----CHHHHHHHHHcCCcccc---
Q 010517           78 NAYRPGGRGGTPLHHAAKR--GLEPTVRLLLSCGANALV-RNDDCHTALGVARIKG----HINVVRAIESHICYFCG---  147 (508)
Q Consensus        78 n~~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~ga~~~~-~d~~g~TpLh~A~~~g----~~~~v~~Ll~~ga~~~~---  147 (508)
                      +.+  |..|+||||+|+..  ++.+++++|+++|++++. .+..|.||||+|++.+    +.+++++|+++|++++.   
T Consensus       139 ~~~--d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~  216 (494)
T PHA02989        139 DVK--NSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN  216 (494)
T ss_pred             ccc--CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC
Confidence            666  67788888887653  577888888888888877 5677888888877654    77888888887776541   


Q ss_pred             ---------------------------------cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccc
Q 010517          148 ---------------------------------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYP  194 (508)
Q Consensus       148 ---------------------------------~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~  194 (508)
                                                       +.+|..|+|||| +|+..++.+++++|+++|++++..+..+.++++.
T Consensus       217 ~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~-~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~  295 (494)
T PHA02989        217 GSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLL-ISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTY  295 (494)
T ss_pred             ccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHH-HHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence                                             145677999999 9999999999999999999999999999999999


Q ss_pred             cccccChHHHHHHHH
Q 010517          195 SLQDVQPRAVIALWK  209 (508)
Q Consensus       195 a~~~~~~~~v~~l~~  209 (508)
                      +.+.+....+..++.
T Consensus       296 A~~~~~~~iv~~LL~  310 (494)
T PHA02989        296 AIKHGNIDMLNRILQ  310 (494)
T ss_pred             HHHcCCHHHHHHHHh
Confidence            999888766655443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.1e-25  Score=237.92  Aligned_cols=234  Identities=14%  Similarity=0.100  Sum_probs=183.8

Q ss_pred             ccCcccccCCchHHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCH----HHHHHHHHcCCCCcc
Q 010517            7 SMNQHQQRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI----NVAKTLIELGANINA   79 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~----~~v~~Ll~~ga~~n~   79 (508)
                      ....+.+|.+|+||||+|+..   |+.++|++||++|++++.+|..|.||||+|+.. |+.    +++++|++.+...|.
T Consensus        22 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~-g~~~v~~~~~~~Ll~~~~~~n~  100 (661)
T PHA02917         22 RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNS-RHVKVNKDIAMALLEATGYSNI  100 (661)
T ss_pred             cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-CChhHHHHHHHHHHhccCCCCC
Confidence            344567799999999997555   889999999999999999999999999999997 874    466888887655555


Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHH--HhCCHHHHHHHHHcCCccccccccc---CC
Q 010517           80 YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR--IKGHINVVRAIESHICYFCGWLREF---YG  154 (508)
Q Consensus        80 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~--~~g~~~~v~~Ll~~ga~~~~~~~~~---~g  154 (508)
                      .  +.  .+++|+|+..|+.++|++|+++|++++..|..|+||||+|+  ..|+.+++++|+++|++++  .+|.   .|
T Consensus       101 ~--~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn--~~d~~~~~g  174 (661)
T PHA02917        101 N--DF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL--YEDEDDEYG  174 (661)
T ss_pred             C--Cc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc--ccccccccc
Confidence            4  32  37788899999999999999999999999999999999654  5789999999999999997  4443   34


Q ss_pred             -----------CCHHHHHHhh-----------cCCHHHHHHhhhCCCCCCCCCccccccccccccccChH-HHHHHHHhh
Q 010517          155 -----------PSFLEALAPQ-----------LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPR-AVIALWKAK  211 (508)
Q Consensus       155 -----------~tpL~~~A~~-----------~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~-~v~~l~~~~  211 (508)
                                 .|||| +|+.           .++.+++++|+++|++++.++..+.++++.++..++.+ .++.++.. 
T Consensus       175 ~~~~~~~~~~~~t~L~-~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-  252 (661)
T PHA02917        175 YAYDDYQPRNCGTVLH-LYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-  252 (661)
T ss_pred             cccccccccccccHHH-HHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-
Confidence                       59999 7764           46899999999999999999999999999999888754 34443321 


Q ss_pred             hcCCCCCCCCC--cceeccCCCcchhHhhhh------c--CCChhHHHHHHHhhc
Q 010517          212 IDEPKFHQPDP--SLTIYDQATKIRYKFASA------N--EGDKHQLQWLDNACR  256 (508)
Q Consensus       212 ~~~~~~~~~d~--~i~~~d~~~~t~l~~a~~------~--~~~~~~l~~l~~~~~  256 (508)
                             +.+.  .....|..+.++++++.-      .  .-+...++.|.....
T Consensus       253 -------g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga  300 (661)
T PHA02917        253 -------GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGK  300 (661)
T ss_pred             -------CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCC
Confidence                   3331  123456667777777761      1  125566777765553

>PHA02798 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=236.00  Aligned_cols=200  Identities=15%  Similarity=0.108  Sum_probs=176.7

Q ss_pred             cccCcccccCCchHHHHHHHHc-----CCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhC--CCHHHHHHHHHcCCCCc
Q 010517            6 NSMNQHQQRQSKDELLYQWVIA-----GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS--GLINVAKTLIELGANIN   78 (508)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~Aa~~-----g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~--g~~~~v~~Ll~~ga~~n   78 (508)
                      .+.++|.+|..|.||||+|+.+     ++.+++++|+++|+|+|.+|..|.||||+|+..+  ++.+++++|+++|++++
T Consensus        60 ~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn  139 (489)
T PHA02798         60 LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT  139 (489)
T ss_pred             CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc
Confidence            4567888899999999999864     7899999999999999999999999999999862  37899999999999999


Q ss_pred             ccCCCCCCCcHHHHHHHcCC---HHHHHHHHHCCCCccccC-CCCCcHHHHHHHh----CCHHHHHHHHHcCCcccc---
Q 010517           79 AYRPGGRGGTPLHHAAKRGL---EPTVRLLLSCGANALVRN-DDCHTALGVARIK----GHINVVRAIESHICYFCG---  147 (508)
Q Consensus        79 ~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~~~----g~~~~v~~Ll~~ga~~~~---  147 (508)
                      .+  |..|.||||+|+..++   .+++++|++.|++++..+ ..|.||||.++..    ++.+++++|+++|++++.   
T Consensus       140 ~~--d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~  217 (489)
T PHA02798        140 LL--DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK  217 (489)
T ss_pred             cc--CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc
Confidence            98  8899999999999988   999999999999999885 5789999998765    478999999988875541   


Q ss_pred             ----------------------------------cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCcccccccc
Q 010517          148 ----------------------------------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY  193 (508)
Q Consensus       148 ----------------------------------~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~  193 (508)
                                                        +.+|..|.|||| +|+..++.+++++|+++|++++..+..++++++
T Consensus       218 ~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~-~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~  296 (489)
T PHA02798        218 SHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLY-YSVSHNNRKIFEYLLQLGGDINIITELGNTCLF  296 (489)
T ss_pred             cccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHH-HHHHcCcHHHHHHHHHcCCcccccCCCCCcHHH
Confidence                                              146778999999 999999999999999999999999999999999


Q ss_pred             ccccccChHHHHHHH
Q 010517          194 PSLQDVQPRAVIALW  208 (508)
Q Consensus       194 ~a~~~~~~~~v~~l~  208 (508)
                      .++..+....+..++
T Consensus       297 ~A~~~~~~~iv~~lL  311 (489)
T PHA02798        297 TAFENESKFIFNSIL  311 (489)
T ss_pred             HHHHcCcHHHHHHHH
Confidence            999888866555443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=2.2e-24  Score=239.56  Aligned_cols=167  Identities=15%  Similarity=0.149  Sum_probs=156.1

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A   93 (508)
                      +..+.++||.||..|+.++++.|++.|+|+|..|.+|+||||+|+.+ |+.+++++|+++|+++|.+  |..|+||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~gadin~~--d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK-GYEDCVLVLLKHACNVHIR--DANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCCc--CCCCCCHHHHH
Confidence            44678999999999999999999999999999999999999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (508)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~  173 (508)
                      +..|+.+++++|++.++..+  ...|.++||.|+..|+.+++++|+++|++++  .+|.+|.|||| +|+..|+.+++++
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin--~~d~~G~TpLh-~A~~~g~~~iv~~  673 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD--SEDHQGATALQ-VAMAEDHVDMVRL  673 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCcHHHHHH
Confidence            99999999999999887654  3467799999999999999999999999999  99999999999 9999999999999


Q ss_pred             hhhCCCCCCCCCccc
Q 010517          174 VIPCGTANPSKPLRF  188 (508)
Q Consensus       174 Ll~~g~~~~~~~~~~  188 (508)
                      |+++|++++..+..+
T Consensus       674 Ll~~GAdv~~~~~~g  688 (823)
T PLN03192        674 LIMNGADVDKANTDD  688 (823)
T ss_pred             HHHcCCCCCCCCCCC
Confidence            999999998776443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.5e-24  Score=215.55  Aligned_cols=179  Identities=12%  Similarity=-0.032  Sum_probs=161.8

Q ss_pred             CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCC------ccCCCCChHHHHHHH--hCCCHHHHHHHHHcCCCCccc
Q 010517            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLE------WMDKEGKTPLIVACM--DSGLINVAKTLIELGANINAY   80 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~------~~d~~G~TpLh~Aa~--~~g~~~~v~~Ll~~ga~~n~~   80 (508)
                      ++|.+..+|     +|+..+..+++++|+++|+++|      .++..++|+||+++.  . |+.++|++|+++||+++..
T Consensus        74 ~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~-n~~eiV~~LI~~GADIn~~  147 (437)
T PHA02795         74 NIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAY-VEIDIVDFMVDHGAVIYKI  147 (437)
T ss_pred             chhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcC-CCHHHHHHHHHCCCCCCCC
Confidence            455555555     9999999999999999999998      788999999999998  6 8999999999999999975


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc------CCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCC
Q 010517           81 RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR------NDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG  154 (508)
Q Consensus        81 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~------d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g  154 (508)
                          .+.||||+|+..++.+++++|+++|++....      +..+.|++|.|...++.+++++|+++|++++  .+|..|
T Consensus       148 ----~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN--~kD~~G  221 (437)
T PHA02795        148 ----ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN--QLDAGG  221 (437)
T ss_pred             ----CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC--cCCCCC
Confidence                4479999999999999999999999854222      2347899999999999999999999999999  999999


Q ss_pred             CCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccC
Q 010517          155 PSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (508)
Q Consensus       155 ~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~  200 (508)
                      .|||| +|+..|+.+++++|+++|++++.++..+.++++.|+..+.
T Consensus       222 ~TpLh-~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        222 RTLLY-RAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             CCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            99999 9999999999999999999999999999999999988774

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=5.9e-25  Score=192.67  Aligned_cols=150  Identities=25%  Similarity=0.203  Sum_probs=74.4

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHH
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpL   90 (508)
                      |..+-.+.+|+++++...+++.+..+.+.  .+|..|+.|.|||+||+.+ |++++|++||+.|++++..  .+...++|
T Consensus       123 nevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~-G~i~vV~fLL~~GAdp~~l--gk~resAL  197 (296)
T KOG0502|consen  123 NEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAK-GHIPVVQFLLNSGADPDAL--GKYRESAL  197 (296)
T ss_pred             CccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhc-CchHHHHHHHHcCCChhhh--hhhhhhhH
Confidence            33444445555555544444444433332  3344455555555555554 5555555555555555544  44444555


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCH
Q 010517           91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  168 (508)
Q Consensus        91 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~  168 (508)
                      ++|...|..++|++||.++.|+|..|.+|.|||-||++-||.+|++.|+..|++++  ..+..|.+++. +|...|+.
T Consensus       198 sLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--~e~dsGy~~md-lAValGyr  272 (296)
T KOG0502|consen  198 SLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--QEDDSGYWIMD-LAVALGYR  272 (296)
T ss_pred             hHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc--cccccCCcHHH-HHHHhhhH
Confidence            55555555555555555555555555555555555555555555555555555554  44455555555 45444444

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=220.41  Aligned_cols=197  Identities=16%  Similarity=0.069  Sum_probs=161.9

Q ss_pred             Ccc-cccCCchHHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCC--CHHHHHHHHHcCCCC--ccc
Q 010517            9 NQH-QQRQSKDELLYQWVIAG---DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG--LINVAKTLIELGANI--NAY   80 (508)
Q Consensus         9 ~~~-~~~~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g--~~~~v~~Ll~~ga~~--n~~   80 (508)
                      ++| .+|..|+||||+|+..|   +.++|++||++|+|++.+|..|.||||+|+.. +  +.|+|++|++.|++.  +..
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~-~~~~~eIv~~Ll~~~~~~~~~~~  110 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKR-KYVKSQIVHLLISSYSNASNELT  110 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHc-CCCcHHHHHHHHhcCCCCCcccc
Confidence            445 77899999999999997   59999999999999999999999999999986 5  799999999997655  655


Q ss_pred             CCCCCCCcHHHHHHH--cCCHHHHHHHHH-CCCCccccCC-----CCCcHHHHHHHhCCHHHHHHHHHcCCccccc----
Q 010517           81 RPGGRGGTPLHHAAK--RGLEPTVRLLLS-CGANALVRND-----DCHTALGVARIKGHINVVRAIESHICYFCGW----  148 (508)
Q Consensus        81 ~~d~~g~tpLh~A~~--~g~~~~v~~Ll~-~ga~~~~~d~-----~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~----  148 (508)
                        +..+.+|||.++.  .++.++|++|++ .+++++...+     .|.+|++++...++.++|++|+++|+++++.    
T Consensus       111 --~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~  188 (672)
T PHA02730        111 --SNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRS  188 (672)
T ss_pred             --cccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccc
Confidence              7778999999998  899999999997 6688776633     7899999999999999999999999999632    


Q ss_pred             -ccccCCCCHHHHHH------hhcCCHHHHHHhhhCCCCCCCCCccccccccc--cccccChHHHHHHH
Q 010517          149 -LREFYGPSFLEALA------PQLMSRKIWVVVIPCGTANPSKPLRFELVIYP--SLQDVQPRAVIALW  208 (508)
Q Consensus       149 -~~~~~g~tpL~~~A------~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~--a~~~~~~~~v~~l~  208 (508)
                       ..+..+.+|+-++.      ...++.+++++|+++|++++.++..+++++|.  +...++.+.+..|+
T Consensus       189 ~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li  257 (672)
T PHA02730        189 CMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLI  257 (672)
T ss_pred             ccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHH
Confidence             24444544443222      46778999999999999999999999999984  33444443333333

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=8.7e-24  Score=189.37  Aligned_cols=145  Identities=19%  Similarity=0.185  Sum_probs=124.8

Q ss_pred             cccCcccccCCchHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHH---HHHHHHHcCCCCc
Q 010517            6 NSMNQHQQRQSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN---VAKTLIELGANIN   78 (508)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~---~v~~Ll~~ga~~n   78 (508)
                      +.++++..+.++.++||+|++.|++    +++++|++.|++++.+|..|+||||+|+.. |+.+   ++++|+++|+++|
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~-g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWY-DRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHh-CccCHHHHHHHHHHcCCCCC
Confidence            4566677788888999999999998    566677888999999999999999999987 7654   4889999999999


Q ss_pred             ccCCC-CCCCcHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCC
Q 010517           79 AYRPG-GRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP  155 (508)
Q Consensus        79 ~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~  155 (508)
                      .+  | ..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++++  .++..|.
T Consensus        88 ~~--d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~  162 (166)
T PHA02743         88 AR--ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD--DPLSIGL  162 (166)
T ss_pred             CC--CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcccCCc
Confidence            87  5 589999999999999999999995 799999999999999999999999999999999999988  5665553

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=3.2e-24  Score=232.80  Aligned_cols=228  Identities=23%  Similarity=0.199  Sum_probs=184.3

Q ss_pred             cCcccccCCchHHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAG-DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      ...+..++.|.|++|+|+..| ..++...+++.|+++|..-..|.||||+|+.. |+.+++++|++.++..+..  ...|
T Consensus       431 A~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~-Gh~~~~~llle~~~~~~~~--~~~~  507 (1143)
T KOG4177|consen  431 ASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQE-GHTEVVQLLLEGGANDNLD--AKKG  507 (1143)
T ss_pred             CChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhcc-CCchHHHHhhhcCCccCcc--chhc
Confidence            455667777888888888888 77777777888888888888888888888876 8888888888887766665  5677


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcC
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~  166 (508)
                      .|+||+|...++..+++.++++|++++.++..|+||||.|+.+|++.+|++|+++|++++  .+++.|+|||| .|+..|
T Consensus       508 l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~--ak~~~G~TPLH-~Aa~~G  584 (1143)
T KOG4177|consen  508 LTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN--AKDKLGYTPLH-QAAQQG  584 (1143)
T ss_pred             cchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc--ccCCCCCChhh-HHHHcC
Confidence            888888888888888888888899999999999999999999999999999999999999  89999999999 999999


Q ss_pred             CHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChh
Q 010517          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKH  246 (508)
Q Consensus       167 ~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~  246 (508)
                      +.+|+++|+++|++++..+..+.++++.+...++...+..+... ...+  .-.+  ....+..|.+|..+..+...+.+
T Consensus       585 ~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~-~~~~--~~~~--~~~e~~~g~~p~~v~e~~~~~~~  659 (1143)
T KOG4177|consen  585 HNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVV-TATP--AATD--PVKENRKGAVPEDVAEELDTDRQ  659 (1143)
T ss_pred             hHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhc-cCcc--cccc--chhhhhcccChhhHHHHhhhhhh
Confidence            99999999999999999999999999999988886555443322 2221  1122  34456677888887775554444

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=3.6e-23  Score=222.03  Aligned_cols=208  Identities=12%  Similarity=0.055  Sum_probs=165.3

Q ss_pred             HHHHHHHHHcCCCCCccCCCCChHHHHHHHh--CCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHH----HHH
Q 010517           30 VDAIRALRSQGASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEP----TVR  103 (508)
Q Consensus        30 ~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~----~v~  103 (508)
                      ++.|+.||.+|..++.+|.+|+||||+|+..  .|+.++|++|++.|++++.+  +..|+||||+|+..|+.+    +++
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~--~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHK--NWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcccc--CCCCCCHHHHHHHcCChhHHHHHHH
Confidence            5788999999999999999999999997543  26799999999999999987  889999999999999854    567


Q ss_pred             HHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHH-HhhcCCHHHHHHhhhCCCCCC
Q 010517          104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL-APQLMSRKIWVVVIPCGTANP  182 (508)
Q Consensus       104 ~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~-A~~~~~~~i~~~Ll~~g~~~~  182 (508)
                      +|++.+...+..+.  .+++|+|+..++.++|++|+++|++++  .+|.+|+||||.+ ++..++.+++++|+++|++++
T Consensus        90 ~Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin--~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn  165 (661)
T PHA02917         90 ALLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLS--VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL  165 (661)
T ss_pred             HHHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCC--ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence            88887544444432  367888999999999999999999999  9999999999932 346789999999999999987


Q ss_pred             CCCcc--------------ccccccccccc-----------cChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHh
Q 010517          183 SKPLR--------------FELVIYPSLQD-----------VQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKF  237 (508)
Q Consensus       183 ~~~~~--------------~~~~l~~a~~~-----------~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~  237 (508)
                      ..+..              ..++++.++..           .+.        ..++.++.+|+|  ++.+|..|.||||+
T Consensus       166 ~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~--------eiv~~Li~~Gad--vn~~d~~G~TpLh~  235 (661)
T PHA02917        166 YEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRP--------EVVKCLINHGIK--PSSIDKNYCTALQY  235 (661)
T ss_pred             ccccccccccccccccccccccHHHHHHhhcccccccccccCcH--------HHHHHHHHCCCC--cccCCCCCCcHHHH
Confidence            54421              14677766431           121        233344556888  99999999999999


Q ss_pred             hhhcCCC-hhHHHHHHH
Q 010517          238 ASANEGD-KHQLQWLDN  253 (508)
Q Consensus       238 a~~~~~~-~~~l~~l~~  253 (508)
                      |+..... ...++.|..
T Consensus       236 A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        236 YIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             HHHcCCCcHHHHHHHHh
Confidence            9976654 356666654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=5.1e-23  Score=215.67  Aligned_cols=221  Identities=16%  Similarity=0.103  Sum_probs=174.6

Q ss_pred             CchHHHHHH------HHcCCHHHHHHHHHcCCCCCccCCCCChHHHH--HHHhCCCHHHHHHHHH---------------
Q 010517           16 SKDELLYQW------VIAGDVDAIRALRSQGASLEWMDKEGKTPLIV--ACMDSGLINVAKTLIE---------------   72 (508)
Q Consensus        16 ~g~t~L~~A------a~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~--Aa~~~g~~~~v~~Ll~---------------   72 (508)
                      ...|.||++      ...+..+++++||++|+|+|.+|..|.||||+  ++.. |+.|+|++|++               
T Consensus       195 ~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~-~~~eiv~~Li~~~~~~~~~~~~~~~~  273 (672)
T PHA02730        195 RCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCST-IDIEIVKLLIKDVDTCSVYDDISQPY  273 (672)
T ss_pred             ccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCc-ccHHHHHHHHhccccccccccccchh
Confidence            344556644      35678999999999999999999999999995  4444 77999999999               


Q ss_pred             -----------------cCCCCcc--------------------cCCCCCCCc---------------------HHHHHH
Q 010517           73 -----------------LGANINA--------------------YRPGGRGGT---------------------PLHHAA   94 (508)
Q Consensus        73 -----------------~ga~~n~--------------------~~~d~~g~t---------------------pLh~A~   94 (508)
                                       +|+|+.+                    .  +..|.+                     -||.-.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~  351 (672)
T PHA02730        274 IRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSY--DSREYNHYIIDNILKRFRQQDESIVQAMLINYL  351 (672)
T ss_pred             hhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccc--cccccchhHHHHHHHhhhccchhHHHHHHHHHH
Confidence                             7888866                    3  556654                     677666


Q ss_pred             HcC---CHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC----HHHHHHHHHcCC--cccccccccCCCCHHHH--HHh
Q 010517           95 KRG---LEPTVRLLLSCGANALVRNDDCHTALGVARIKGH----INVVRAIESHIC--YFCGWLREFYGPSFLEA--LAP  163 (508)
Q Consensus        95 ~~g---~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~----~~~v~~Ll~~ga--~~~~~~~~~~g~tpL~~--~A~  163 (508)
                      ..+   +.+++++|+++||+++.. ..|.||||+|+..++    .+++++|+++|+  +++  .+|.+|.||||.  ++.
T Consensus       352 ~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN--~kd~~G~T~Lh~~i~a~  428 (672)
T PHA02730        352 HYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAIN--HVSNNGRLCMYGLILSR  428 (672)
T ss_pred             hcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccc--ccccCCCchHhHHHHHH
Confidence            655   689999999999999985 799999999998875    899999999998  477  889999999982  232


Q ss_pred             hcC---------CHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccC-CCcc
Q 010517          164 QLM---------SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ-ATKI  233 (508)
Q Consensus       164 ~~~---------~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~-~~~t  233 (508)
                      ..+         ..+++++|+.+|++++.++..+.++++.++.......+.        .++.+|++  ++.+|. .|.|
T Consensus       429 ~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive--------~LI~~GAd--IN~~d~~~g~T  498 (672)
T PHA02730        429 FNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFAR--------RLLEYGAS--VNTTSRSIINT  498 (672)
T ss_pred             hccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHH--------HHHHCCCC--CCCCCCcCCcC
Confidence            222         235799999999999999999999999998877644333        33455888  888887 5899


Q ss_pred             hhHhhhhc-CCChhHHHHHH
Q 010517          234 RYKFASAN-EGDKHQLQWLD  252 (508)
Q Consensus       234 ~l~~a~~~-~~~~~~l~~l~  252 (508)
                      ++++++.. .+....++.|.
T Consensus       499 aL~~Aa~~~~~~~eIv~~LL  518 (672)
T PHA02730        499 AIQKSSYRRENKTKLVDLLL  518 (672)
T ss_pred             HHHHHHHhhcCcHHHHHHHH
Confidence            99999864 34455555554

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=1.3e-23  Score=213.75  Aligned_cols=221  Identities=22%  Similarity=0.172  Sum_probs=194.4

Q ss_pred             ccccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCC
Q 010517            5 LNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (508)
Q Consensus         5 ~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~   84 (508)
                      ..+-++|.+|.+|.|+||.|+.+|+.+++++|+++.+-++..|..|.+|||+|++. |+.+++++|+.++..+|..  ..
T Consensus        37 trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~-g~~e~vkmll~q~d~~na~--~~  113 (854)
T KOG0507|consen   37 TRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWN-GNLEIVKMLLLQTDILNAV--NI  113 (854)
T ss_pred             CCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhc-CcchHHHHHHhcccCCCcc--cc
Confidence            34567889999999999999999999999999999998899999999999999998 9999999999999999998  88


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc------ccccccCCCCHH
Q 010517           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC------GWLREFYGPSFL  158 (508)
Q Consensus        85 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~------~~~~~~~g~tpL  158 (508)
                      .|.||||.|+.+||.+++.+|+.+|+|...+|+.+.|+|.+|++.|..++|++|++......      ...++..+.+||
T Consensus       114 e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~pl  193 (854)
T KOG0507|consen  114 ENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPL  193 (854)
T ss_pred             cCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCc
Confidence            99999999999999999999999999999999999999999999999999999998732211      125677899999


Q ss_pred             HHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhh
Q 010517          159 EALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFA  238 (508)
Q Consensus       159 ~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a  238 (508)
                      | +|+.+||.++++.|++.|.+++... ...+++|.++--+....+.-+++..        .+  ..++|..|+|.|++.
T Consensus       194 H-laakngh~~~~~~ll~ag~din~~t-~~gtalheaalcgk~evvr~ll~~g--------in--~h~~n~~~qtaldil  261 (854)
T KOG0507|consen  194 H-LAAKNGHVECMQALLEAGFDINYTT-EDGTALHEAALCGKAEVVRFLLEIG--------IN--THIKNQHGQTALDII  261 (854)
T ss_pred             c-hhhhcchHHHHHHHHhcCCCccccc-ccchhhhhHhhcCcchhhhHHHhhc--------cc--cccccccchHHHHHH
Confidence            9 9999999999999999999998877 4568888888777766666555553        34  566788889999877


Q ss_pred             hh
Q 010517          239 SA  240 (508)
Q Consensus       239 ~~  240 (508)
                      ..
T Consensus       262 ~d  263 (854)
T KOG0507|consen  262 ID  263 (854)
T ss_pred             Hh
Confidence            64

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.90  E-value=4e-24  Score=232.10  Aligned_cols=219  Identities=24%  Similarity=0.219  Sum_probs=189.0

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCC-CHHHHHHHHHcCCCCcccCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGANINAYRPGGR   85 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g-~~~~v~~Ll~~ga~~n~~~~d~~   85 (508)
                      ....+.+.+.|.||||.|+..++..+|+.++++|++++..+..|+||+|+|+.. | ..+++..++++|+++|..  ...
T Consensus       397 ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~-g~~~~~~~~l~~~g~~~n~~--s~~  473 (1143)
T KOG4177|consen  397 GADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKK-GRYLQIARLLLQYGADPNAV--SKQ  473 (1143)
T ss_pred             cCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhc-ccHhhhhhhHhhcCCCcchh--ccc
Confidence            344677788888888888888888888888888888888888888888888887 6 778888888888888887  678


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~  165 (508)
                      |.||||+|+..|+.+++.+|++.++..+.....|.|+||+|...++..+++.+++.|++++  .++..|.|||| .|+..
T Consensus       474 G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~--~~~~r~~TpLh-~A~~~  550 (1143)
T KOG4177|consen  474 GFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVD--LRTGRGYTPLH-VAVHY  550 (1143)
T ss_pred             cCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCcee--hhcccccchHH-HHHhc
Confidence            8888888888888888888888888888888888888888888888888888888999998  89999999999 99999


Q ss_pred             CCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (508)
Q Consensus       166 ~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~  241 (508)
                      |+.++|++|+++|++.+.++..+.+++|.+++.++...+..|++        +|++  ++..|.+|.|||++|...
T Consensus       551 g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk--------~GA~--vna~d~~g~TpL~iA~~l  616 (1143)
T KOG4177|consen  551 GNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLK--------HGAS--VNAADLDGFTPLHIAVRL  616 (1143)
T ss_pred             CCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHH--------cCCC--CCcccccCcchhHHHHHh
Confidence            99999999999999999999999999999999997655555444        3778  889999999999998843

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1e-24  Score=191.20  Aligned_cols=183  Identities=19%  Similarity=0.142  Sum_probs=166.9

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHH
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpL   90 (508)
                      ...+.+|..+++.++-.|+...+..+|..|+..|..+-.+.+|+++++.. .+.+++.+|.+..  +|..  |..|.|||
T Consensus        90 ~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq-l~L~~~~~~~~n~--VN~~--De~GfTpL  164 (296)
T KOG0502|consen   90 DETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ-LHLDVVDLLVNNK--VNAC--DEFGFTPL  164 (296)
T ss_pred             CCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH-HHHHHHHHHhhcc--ccCc--cccCchHh
Confidence            34567799999999999999999999999999999999999999999987 8888887777764  5655  89999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHH
Q 010517           91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKI  170 (508)
Q Consensus        91 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i  170 (508)
                      ++|+.+|+..+|++||+.|+|++...+...|+|++|++.|+.+||++||.++.|+|  ..|.+|-|||- +|++.+|.+|
T Consensus       165 iWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN--vyDwNGgTpLl-yAvrgnhvkc  241 (296)
T KOG0502|consen  165 IWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN--VYDWNGGTPLL-YAVRGNHVKC  241 (296)
T ss_pred             HHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc--eeccCCCceee-eeecCChHHH
Confidence            99999999999999999999999999999999999999999999999999999999  99999999999 9999999999


Q ss_pred             HHHhhhCCCCCCCCCccccccccccccccCh
Q 010517          171 WVVVIPCGTANPSKPLRFELVIYPSLQDVQP  201 (508)
Q Consensus       171 ~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~  201 (508)
                      ++.|+..|++....+..+...+-.+..-+..
T Consensus       242 ve~Ll~sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  242 VESLLNSGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             HHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence            9999999999998887777776666655543

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=6.6e-23  Score=184.50  Aligned_cols=131  Identities=22%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCChHHHHHHHhCCC----HHHHHHHHHcCCCCccc
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRS------QGASLEWMDKEGKTPLIVACMDSGL----INVAKTLIELGANINAY   80 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~------~g~~~~~~d~~G~TpLh~Aa~~~g~----~~~v~~Ll~~ga~~n~~   80 (508)
                      +.+|..|.|+||+|+..|+.++|+.|+.      .|++++.+|..|.||||+|+.. |+    .+++++|+++|+++|.+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~-g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEK-HEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCC
Confidence            4456667777777777777777776643      2466667777777777777765 65    46667777777777766


Q ss_pred             CCC-CCCCcHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517           81 RPG-GRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (508)
Q Consensus        81 ~~d-~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~  144 (508)
                        + ..|+||||+|+..++.+++++|++ .|++++..|.+|.||||+|+..++.+++++|++.++.
T Consensus        94 --~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         94 --EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             --CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence              4 367777777777777777777775 4677777777777777777777777777777666543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.89  E-value=6.3e-23  Score=212.73  Aligned_cols=217  Identities=14%  Similarity=0.024  Sum_probs=168.1

Q ss_pred             cccCcccccCCchHHHHHHHH-cCCHHHHHHHHHcCCCC------------------------------------CccCC
Q 010517            6 NSMNQHQQRQSKDELLYQWVI-AGDVDAIRALRSQGASL------------------------------------EWMDK   48 (508)
Q Consensus         6 ~~~~~~~~~~~g~t~L~~Aa~-~g~~~~v~~Ll~~g~~~------------------------------------~~~d~   48 (508)
                      +++++|.++..|.++||+|+. .++.++|++||++|+|+                                    |..|.
T Consensus        94 ~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  173 (631)
T PHA02792         94 KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDR  173 (631)
T ss_pred             cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCC
Confidence            356777778888888899865 68999999999988763                                    23456


Q ss_pred             CCChHHHHHHHhCC-------CHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC--CHHHHHHHHH------------
Q 010517           49 EGKTPLIVACMDSG-------LINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG--LEPTVRLLLS------------  107 (508)
Q Consensus        49 ~G~TpLh~Aa~~~g-------~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~------------  107 (508)
                      .|.||||+|+.. +       +.|++++|+.+|++++.+  |..|.||||+|+.+.  ..+++++|++            
T Consensus       174 ~g~t~L~~~i~~-~s~~~~~~~~~v~k~Li~~g~~~~~~--d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l  250 (631)
T PHA02792        174 MGKTVLYYYIIT-RSQDGYATSLDVINYLISHEKEMRYY--TYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNIL  250 (631)
T ss_pred             CCCchHHHHHhh-CCcccccCCHHHHHHHHhCCCCcCcc--CCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHH
Confidence            688999999886 6       689999999999999887  778999999988766  4555555553            


Q ss_pred             -------------------------------------------------------------------------------C
Q 010517          108 -------------------------------------------------------------------------------C  108 (508)
Q Consensus       108 -------------------------------------------------------------------------------~  108 (508)
                                                                                                     +
T Consensus       251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~  330 (631)
T PHA02792        251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE  330 (631)
T ss_pred             HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence                                                                                           2


Q ss_pred             CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCC--CCHHHHHHhhcCCH---HHHHHhhhCCCCCCC
Q 010517          109 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG--PSFLEALAPQLMSR---KIWVVVIPCGTANPS  183 (508)
Q Consensus       109 ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g--~tpL~~~A~~~~~~---~i~~~Ll~~g~~~~~  183 (508)
                      |+++.  .......++.|+..|+.+++++|+++|++++  .+|.+|  .|||| +|......   +++++|+++|++++.
T Consensus       331 Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN--~kD~~g~~~TpLh-~A~~n~~~~v~~IlklLIs~GADIN~  405 (631)
T PHA02792        331 GATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVV--EDDDNIINIMPLF-PTLSIHESDVLSILKLCKPYIDDINK  405 (631)
T ss_pred             CCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchh--hhcCCCCChhHHH-HHHHhccHhHHHHHHHHHhcCCcccc
Confidence            22211  1124557888889999999999999999998  777775  69999 77666554   467889999999999


Q ss_pred             CCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhh
Q 010517          184 KPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (508)
Q Consensus       184 ~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~  240 (508)
                      ++..+.++++.++..+..+.+..|        ..+|++  ++.+|..|+|++++|..
T Consensus       406 kD~~G~TPLh~Aa~~~n~eivelL--------Ls~GAD--IN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        406 IDKHGRSILYYCIESHSVSLVEWL--------IDNGAD--INITTKYGSTCIGICVI  452 (631)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHH--------HHCCCC--CCCcCCCCCCHHHHHHH
Confidence            999999999999987775444332        344788  88999999999999874

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=182.23  Aligned_cols=143  Identities=15%  Similarity=0.170  Sum_probs=129.8

Q ss_pred             cCCCCCccCCCCChHHHHHHHhCCCH----HHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHH---HHHHHHCCCC
Q 010517           39 QGASLEWMDKEGKTPLIVACMDSGLI----NVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPT---VRLLLSCGAN  111 (508)
Q Consensus        39 ~g~~~~~~d~~G~TpLh~Aa~~~g~~----~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~---v~~Ll~~ga~  111 (508)
                      +|++++..+.++.++||+||+. |+.    +++++|++.|++++.+  |..|+||||+|+..|+.+.   +++|+++|++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~-g~~~~l~~~~~~l~~~g~~~~~~--d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad   85 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRT-GNIYELMEVAPFISGDGHLLHRY--DHHGRQCTHMVAWYDRANAVMKIELLVNMGAD   85 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHc-CCHHHHHHHHHHHhhcchhhhcc--CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC
Confidence            5678888899999999999998 877    6777888999999988  8899999999999988654   8999999999


Q ss_pred             ccccC-CCCCcHHHHHHHhCCHHHHHHHHH-cCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCcc
Q 010517          112 ALVRN-DDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLR  187 (508)
Q Consensus       112 ~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~  187 (508)
                      ++.+| ..|.||||+|+..++.+++++|++ .|++++  .+|..|.|||| +|+..++.+++++|+.+|++++.++..
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~tpL~-~A~~~~~~~iv~~Ll~~ga~~~~~~~~  160 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG--AINYQHETAYH-IAYKMRDRRMMEILRANGAVCDDPLSI  160 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence            99998 589999999999999999999995 899999  89999999999 999999999999999999999877643

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3e-22  Score=193.34  Aligned_cols=156  Identities=22%  Similarity=0.180  Sum_probs=135.9

Q ss_pred             ccccCCchH-HHHHHHHcCCHHHHHHHHHcCCCCCccC----CCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCC
Q 010517           11 HQQRQSKDE-LLYQWVIAGDVDAIRALRSQGASLEWMD----KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (508)
Q Consensus        11 ~~~~~~g~t-~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d----~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~   85 (508)
                      ..+|+.|.| +||.|++.|+.+++++||++|+|+|.++    ..|.||||+|+.. ++.+++++|+++|+++|.++ +..
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~-~~~eivklLL~~GADVN~~~-~~~  103 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDC-DNDDAAKLLIRYGADVNRYA-EEA  103 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcCccc-CCC
Confidence            456777765 5666677799999999999999999874    5899999999997 99999999999999999863 467


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~  165 (508)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++.++...       ..+..+.+|++ ++   
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~---  172 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN-------EISNFYKHPKK-IL---  172 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC-------cccccccChhh-hh---
Confidence            99999999999999999999999999999999999999999999999988666532       24567789998 43   


Q ss_pred             CCHHHHHHhhhCCC
Q 010517          166 MSRKIWVVVIPCGT  179 (508)
Q Consensus       166 ~~~~i~~~Ll~~g~  179 (508)
                      ++.+++++|++++.
T Consensus       173 ~n~ei~~~Lish~v  186 (300)
T PHA02884        173 INFDILKILVSHFI  186 (300)
T ss_pred             ccHHHHHHHHHHHH
Confidence            47899999999987

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=2.1e-22  Score=223.89  Aligned_cols=150  Identities=21%  Similarity=0.135  Sum_probs=140.1

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      +.+.|.+|..|.||||+|+..|+.++|++|+++|+++|.+|.+|.||||+|+.. |+.+++++|++.++..+    ...|
T Consensus       548 G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~-g~~~iv~~L~~~~~~~~----~~~~  622 (823)
T PLN03192        548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA-KHHKIFRILYHFASISD----PHAA  622 (823)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh-CCHHHHHHHHhcCcccC----cccC
Confidence            456788999999999999999999999999999999999999999999999997 99999999999987766    3467


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCC-CCHHHHHHhh
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG-PSFLEALAPQ  164 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g-~tpL~~~A~~  164 (508)
                      .++||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|++++  ..|..| .||++ ++..
T Consensus       623 ~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~--~~~~~g~~t~~~-l~~~  698 (823)
T PLN03192        623 GDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD--KANTDDDFSPTE-LREL  698 (823)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CCCCCCCCCHHH-HHHH
Confidence            799999999999999999999999999999999999999999999999999999999999  888888 99998 5543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.5e-22  Score=206.42  Aligned_cols=205  Identities=13%  Similarity=0.060  Sum_probs=166.2

Q ss_pred             CcccccCCchHHHHHHHHcC-------CHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCC--CHHHHHHHH--------
Q 010517            9 NQHQQRQSKDELLYQWVIAG-------DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG--LINVAKTLI--------   71 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g-------~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g--~~~~v~~Ll--------   71 (508)
                      ..|.+|+.|.||||+|+..+       +.++++.||++|++++.+|..|.||||+|+.+ .  ..|++++|+        
T Consensus       167 ~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~-~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        167 TTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDK-CDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             ccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHc-ccchHHHHHHHHhccccccc
Confidence            45678999999999999999       89999999999999999999999999999886 5  344444444        


Q ss_pred             --------------------------------------------------------------------------------
Q 010517           72 --------------------------------------------------------------------------------   71 (508)
Q Consensus        72 --------------------------------------------------------------------------------   71 (508)
                                                                                                      
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                                                                                            


Q ss_pred             ---HcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC--CcHHHHHHHhCCH---HHHHHHHHcCC
Q 010517           72 ---ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC--HTALGVARIKGHI---NVVRAIESHIC  143 (508)
Q Consensus        72 ---~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g--~TpLh~A~~~g~~---~~v~~Ll~~ga  143 (508)
                         ++|++.+    ...+...+|.|+..|+.++|++|+++||+++.+|..|  .||||+|......   +++++|+++|+
T Consensus       326 ~LId~Ga~~~----r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GA  401 (631)
T PHA02792        326 CMIDEGATLY----RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYID  401 (631)
T ss_pred             HHHHCCCccc----cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCC
Confidence               4444332    1124567899999999999999999999999999875  6999998776654   46889999999


Q ss_pred             cccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCcccccccccccc--ccChHHHHHHHHhhhcCCCCCCCC
Q 010517          144 YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQ--DVQPRAVIALWKAKIDEPKFHQPD  221 (508)
Q Consensus       144 ~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~--~~~~~~v~~l~~~~~~~~~~~~~d  221 (508)
                      +++  .+|..|.|||| .|+..++.+++++|+++|++++.++..++++++.+..  ......+...+...++.++.++.+
T Consensus       402 DIN--~kD~~G~TPLh-~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        402 DIN--KIDKHGRSILY-YCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             ccc--cccccCcchHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            999  89999999999 9999999999999999999999999999999998864  222233333344445555555555

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=7.5e-22  Score=177.63  Aligned_cols=139  Identities=16%  Similarity=0.117  Sum_probs=124.3

Q ss_pred             HHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHH------cCCCCcccCCCCCCCcHHHHHHHcCC----H
Q 010517           30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE------LGANINAYRPGGRGGTPLHHAAKRGL----E   99 (508)
Q Consensus        30 ~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~------~ga~~n~~~~d~~g~tpLh~A~~~g~----~   99 (508)
                      ..+++.++      +.+|..|.||||+|+.. |+.+++++|+.      .|++++.+  |..|+||||+|+..|+    .
T Consensus         7 ~~~~~~~~------~~~~~~g~t~Lh~Aa~~-g~~~~v~~l~~~~~~~~~ga~in~~--d~~g~T~Lh~A~~~g~~~~~~   77 (169)
T PHA02741          7 MTCLEEMI------AEKNSEGENFFHEAARC-GCFDIIARFTPFIRGDCHAAALNAT--DDAGQMCIHIAAEKHEAQLAA   77 (169)
T ss_pred             HHHHHHHh------hccccCCCCHHHHHHHc-CCHHHHHHHHHHhccchhhhhhhcc--CCCCCcHHHHHHHcCChHHHH
Confidence            34555554      45788999999999998 99999999864      36888888  8899999999999999    5


Q ss_pred             HHHHHHHHCCCCccccCC-CCCcHHHHHHHhCCHHHHHHHHH-cCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhC
Q 010517          100 PTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (508)
Q Consensus       100 ~~v~~Ll~~ga~~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~  177 (508)
                      +++++|+++|++++.++. .|+||||+|+..++.+++++|+. .|++++  .+|.+|+|||| +|...++.+++++|++.
T Consensus        78 ~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~tpL~-~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         78 EIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH--FCNADNKSPFE-LAIDNEDVAMMQILREI  154 (169)
T ss_pred             HHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCCHHH-HHHHCCCHHHHHHHHHH
Confidence            899999999999999985 99999999999999999999997 599998  89999999999 99999999999999988


Q ss_pred             CCC
Q 010517          178 GTA  180 (508)
Q Consensus       178 g~~  180 (508)
                      ++.
T Consensus       155 ~~~  157 (169)
T PHA02741        155 VAT  157 (169)
T ss_pred             HHH
Confidence            764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=3.3e-22  Score=177.25  Aligned_cols=133  Identities=20%  Similarity=0.149  Sum_probs=108.8

Q ss_pred             CcccccCCchHHHHHHHHcCCHHHHHHHHHcCC--C-----CCccCCCCChHHHHHHHhCCCH---HHHHHHHHcCCCCc
Q 010517            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA--S-----LEWMDKEGKTPLIVACMDSGLI---NVAKTLIELGANIN   78 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~--~-----~~~~d~~G~TpLh~Aa~~~g~~---~~v~~Ll~~ga~~n   78 (508)
                      ..+.+|.+|.||||+|++.|+.  +++++..+.  +     ++.+|.+|+||||+|+.. |+.   +++++|+++|+++|
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~-~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNP-DKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeeccc-CchhHHHHHHHHHHcCCCcc
Confidence            3466788899999999999984  333332222  2     335688899999999987 765   56889999999999


Q ss_pred             ccCCC-CCCCcHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517           79 AYRPG-GRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (508)
Q Consensus        79 ~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  146 (508)
                      .+  + ..|+||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..|+.+++++|+++|++.+
T Consensus        86 ~~--~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         86 GK--ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cc--CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            87  5 589999999999999999999997 489999999999999999999999999999999988754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=4.9e-22  Score=196.07  Aligned_cols=172  Identities=28%  Similarity=0.329  Sum_probs=134.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHH
Q 010517           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEP  100 (508)
Q Consensus        21 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~  100 (508)
                      +.-|+..|+.+-|+.||..|+++|..+.+|.|+||-+|.. .+.+||++|+++|++||..  |..||||||.|+..|+..
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id-~~~e~v~~l~e~ga~Vn~~--d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACID-DNLEMVKFLVENGANVNAQ--DNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhc-ccHHHHHHHHHhcCCcccc--ccccCCcchhhcccccHH
Confidence            4445566666667777766666666666777777776665 6667777777777777666  666677777777777777


Q ss_pred             HHHHHHHCCCC-----------------------------------------------------------ccccCCCCCc
Q 010517          101 TVRLLLSCGAN-----------------------------------------------------------ALVRNDDCHT  121 (508)
Q Consensus       101 ~v~~Ll~~ga~-----------------------------------------------------------~~~~d~~g~T  121 (508)
                      ++++|+.+|++                                                           .+..+..|.|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence            77776666654                                                           2456667999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccc
Q 010517          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (508)
Q Consensus       122 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~  198 (508)
                      .||+|+.+|+.++.++|++.|.+++  ++|.+|+|||| +|+.++..+++++|+++|++++.....+++++-.+..+
T Consensus       201 ~lHvAaa~Gy~e~~~lLl~ag~~~~--~~D~dgWtPlH-AAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  201 ALHVAAANGYTEVAALLLQAGYSVN--IKDYDGWTPLH-AAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHHHHhhhHHHHHHHHHHhccCcc--cccccCCCccc-HHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            9999999999999999999999999  99999999999 99999999999999999999998887777776665543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.87  E-value=1.1e-21  Score=216.86  Aligned_cols=227  Identities=16%  Similarity=0.087  Sum_probs=170.4

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCChHHH-HHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517           15 QSKDELLYQWVIAGDVDAIRALRSQ--GASLEWMDKEGKTPLI-VACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (508)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~G~TpLh-~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh   91 (508)
                      ..++..|+.|++.|+.+.|+.+++.  +.++|..|..|+|||| .|+. +++.+++++|+++|+    .  +..|.||||
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~-~~~~eiv~lLl~~g~----~--~~~G~T~Lh   87 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIE-NENLELTELLLNLSC----R--GAVGDTLLH   87 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHh-cChHHHHHHHHhCCC----C--CCcChHHHH
Confidence            4578999999999999999999998  8999999999999999 5555 499999999999997    3  778999999


Q ss_pred             HHHHcC---CHHHHHHHHHCCCC------cc----ccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccc-------
Q 010517           92 HAAKRG---LEPTVRLLLSCGAN------AL----VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-------  151 (508)
Q Consensus        92 ~A~~~g---~~~~v~~Ll~~ga~------~~----~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~-------  151 (508)
                      .|+..+   ...++.+++..+.+      ++    ..+..|.||||+|+.+|+.++|++|+++|++++  .++       
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~--~~~~~~~~~~  165 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP--ARACGDFFVK  165 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC--cCcCCchhhc
Confidence            999732   23344444444422      11    123579999999999999999999999999998  332       


Q ss_pred             -------cCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHH-HHHH---HHhhhcCCCCCCC
Q 010517          152 -------FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA-VIAL---WKAKIDEPKFHQP  220 (508)
Q Consensus       152 -------~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~-v~~l---~~~~~~~~~~~~~  220 (508)
                             ..|.|||| +|+..++.+++++|+++|++++..+..+.+++|.+......+. ..++   ....+........
T Consensus       166 ~~~~~~~~~g~tpL~-~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~  244 (743)
T TIGR00870       166 SQGVDSFYHGESPLN-AAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLR  244 (743)
T ss_pred             CCCCCcccccccHHH-HHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Confidence                   36999999 9999999999999999999999999899999998887652211 0000   1111111111122


Q ss_pred             C--CcceeccCCCcchhHhhhhcCCChhHHHHHH
Q 010517          221 D--PSLTIYDQATKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       221 d--~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      +  ....+.|+.|.||+++|+.. +.....+.+.
T Consensus       245 ~~~el~~i~N~~g~TPL~~A~~~-g~~~l~~lLL  277 (743)
T TIGR00870       245 DSKELEVILNHQGLTPLKLAAKE-GRIVLFRLKL  277 (743)
T ss_pred             ChHhhhhhcCCCCCCchhhhhhc-CCccHHHHHH
Confidence            2  23467899999999999854 3444444443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=3.7e-21  Score=162.93  Aligned_cols=144  Identities=22%  Similarity=0.216  Sum_probs=128.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~   95 (508)
                      -.-.+.+|+..+.+..|+.||+..++ +|.+|.+|+||||-|+.+ ||.+||+.|+..|++++.+  ...||||||-||.
T Consensus        63 p~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn-~h~div~~ll~~gAn~~a~--T~~GWTPLhSAck  139 (228)
T KOG0512|consen   63 PIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYN-GHLDIVHELLLSGANKEAK--TNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhc-CchHHHHHHHHccCCcccc--cccCccchhhhhc
Confidence            34568999999999999999998886 899999999999999997 9999999999999999998  8999999999999


Q ss_pred             cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCH-HHHHHHHHc-CCcccccccccCCCCHHHHHHhhcC
Q 010517           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI-NVVRAIESH-ICYFCGWLREFYGPSFLEALAPQLM  166 (508)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~-~~v~~Ll~~-ga~~~~~~~~~~g~tpL~~~A~~~~  166 (508)
                      -++.+++.+||++|+|||...+...||||+|+...+. ..+++|+.. +....  .++..+.||++ +|-+.+
T Consensus       140 WnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg--~~nn~eeta~~-iARRT~  209 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG--LKNNLEETAFD-IARRTS  209 (228)
T ss_pred             ccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh--hhcCccchHHH-HHHHhh
Confidence            9999999999999999999999999999999987664 456666544 44444  78899999999 887664

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=2.4e-21  Score=182.02  Aligned_cols=158  Identities=18%  Similarity=0.216  Sum_probs=140.0

Q ss_pred             CCccCCCCChHHHHHHHhCCCHHHHHHHHHcC-CCCcccCCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCccccC
Q 010517           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGRGGTPLHHAAKR-----GLEPTVRLLLSCGANALVRN  116 (508)
Q Consensus        43 ~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~g-a~~n~~~~d~~g~tpLh~A~~~-----g~~~~v~~Ll~~ga~~~~~d  116 (508)
                      +|.-|.+|.|+||||+.+ +++++|+.||..| +++|.+  +.-|+||+|+++..     .+.++|..|.+.| |+|.+-
T Consensus       261 VNlaDsNGNTALHYsVSH-aNF~VV~~LLDSgvC~VD~q--NrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKA  336 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSH-ANFDVVSILLDSGVCDVDQQ--NRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKA  336 (452)
T ss_pred             hhhhcCCCCeeeeeeecc-cchHHHHHHhccCccccccc--ccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhh
Confidence            578899999999999998 9999999999997 689988  88999999999864     4678899998876 566554


Q ss_pred             -CCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhC-CCCCCCCCccccccccc
Q 010517          117 -DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC-GTANPSKPLRFELVIYP  194 (508)
Q Consensus       117 -~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~l~~  194 (508)
                       ..|+|+|++|+.+|+.++|+.||..|+|+|  ++|.+|.|+|| .|+.+||++|+++|+.. +.|+..+|..+.+++.+
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdVN--iQDdDGSTALM-CA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I  413 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADVN--IQDDDGSTALM-CAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI  413 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCCc--cccCCccHHHh-hhhhhChHHHHHHHhccCcccceeecCCCchhhhh
Confidence             589999999999999999999999999999  99999999999 99999999999988765 46788888889999999


Q ss_pred             cccccChHHHHHH
Q 010517          195 SLQDVQPRAVIAL  207 (508)
Q Consensus       195 a~~~~~~~~v~~l  207 (508)
                      +.+.++.+....|
T Consensus       414 Aleagh~eIa~ml  426 (452)
T KOG0514|consen  414 ALEAGHREIAVML  426 (452)
T ss_pred             HHhcCchHHHHHH
Confidence            9998886655443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=4.2e-21  Score=170.17  Aligned_cols=132  Identities=17%  Similarity=0.131  Sum_probs=112.9

Q ss_pred             CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC--C-----CcccCCCCCCCcHHHHHHHcCCH---HHHHHHHHCCCCc
Q 010517           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGA--N-----INAYRPGGRGGTPLHHAAKRGLE---PTVRLLLSCGANA  112 (508)
Q Consensus        43 ~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga--~-----~n~~~~d~~g~tpLh~A~~~g~~---~~v~~Ll~~ga~~  112 (508)
                      .+.+|.+|.||||+|++. |+  ++.+|+..+.  +     ++.+  |..|+||||+|+..|+.   +++++|++.|+++
T Consensus        10 ~~~~d~~g~tpLh~A~~~-g~--~~~l~~~~~~~~~~~~~~~~~~--d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi   84 (154)
T PHA02736         10 ASEPDIEGENILHYLCRN-GG--VTDLLAFKNAISDENRYLVLEY--NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI   84 (154)
T ss_pred             HHhcCCCCCCHHHHHHHh-CC--HHHHHHHHHHhcchhHHHHHHh--cCCCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence            356788999999999998 76  3444443332  2     2233  78999999999999987   4689999999999


Q ss_pred             cccC-CCCCcHHHHHHHhCCHHHHHHHHH-cCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCC
Q 010517          113 LVRN-DDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANP  182 (508)
Q Consensus       113 ~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~  182 (508)
                      +.++ ..|.||||+|+..|+.+++++|++ .|++++  .+|..|.|||| +|+..++.+++++|+.+|++.+
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n--~~~~~g~tpL~-~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME--ILNYAFKTPYY-VACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc--cccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC
Confidence            9998 499999999999999999999998 489999  89999999999 9999999999999999998753

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=1.6e-20  Score=207.51  Aligned_cols=197  Identities=15%  Similarity=0.073  Sum_probs=155.6

Q ss_pred             ccCcccccCCchHHHH-HHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHh--CCCHHHHHHHHHcCCC------C
Q 010517            7 SMNQHQQRQSKDELLY-QWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGAN------I   77 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~-~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~--~g~~~~v~~Ll~~ga~------~   77 (508)
                      ..++|..|..|.|||| .|+..++.+++++|+++|+    .+..|.||||.|+..  .+...++++++..+.+      +
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            4677888999999999 8889999999999999987    678899999999962  1222344444444422      1


Q ss_pred             ccc--CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC--------------CCCCcHHHHHHHhCCHHHHHHHHHc
Q 010517           78 NAY--RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIESH  141 (508)
Q Consensus        78 n~~--~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~TpLh~A~~~g~~~~v~~Ll~~  141 (508)
                      +..  +.+..|.||||+|+.+|+.++|++|+++|++++.++              ..|.||||+|+..|+.+++++|+++
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence            111  013469999999999999999999999999998653              3689999999999999999999999


Q ss_pred             CCcccccccccCCCCHHHHHHhhcC---------CHHHHHHhhhCCCCC-------CCCCccccccccccccccChHHHH
Q 010517          142 ICYFCGWLREFYGPSFLEALAPQLM---------SRKIWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQPRAVI  205 (508)
Q Consensus       142 ga~~~~~~~~~~g~tpL~~~A~~~~---------~~~i~~~Ll~~g~~~-------~~~~~~~~~~l~~a~~~~~~~~v~  205 (508)
                      |++++  .+|..|+|||| +|+..+         ...+.++++..++..       ...+..+.++++.+.+.++...+.
T Consensus       198 gadin--~~d~~g~T~Lh-~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~  274 (743)
T TIGR00870       198 PADIL--TADSLGNTLLH-LLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFR  274 (743)
T ss_pred             Ccchh--hHhhhhhHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHH
Confidence            99999  89999999999 888776         234666676666554       344667889999999888887777


Q ss_pred             HHHHh
Q 010517          206 ALWKA  210 (508)
Q Consensus       206 ~l~~~  210 (508)
                      .++..
T Consensus       275 lLL~~  279 (743)
T TIGR00870       275 LKLAI  279 (743)
T ss_pred             HHHHH
Confidence            66654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=8.8e-20  Score=176.19  Aligned_cols=131  Identities=15%  Similarity=0.166  Sum_probs=116.0

Q ss_pred             CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCC--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc-CCCC
Q 010517           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR-NDDC  119 (508)
Q Consensus        43 ~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g  119 (508)
                      +..+|..|.|++++++...|+.+++++|+++|+++|.++.  +..|.||||+|+..++.+++++|+++|++++.. +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            3457888888766666555899999999999999998732  468999999999999999999999999999986 4689


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhh
Q 010517          120 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  176 (508)
Q Consensus       120 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~  176 (508)
                      .||||+|+..++.+++++|++.|++++  .+|.+|.|||| +|+..++.+++.++..
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin--~kd~~G~TpL~-~A~~~~~~~~~~~~~~  158 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADIN--IQTNDMVTPIE-LALMICNNFLAFMICD  158 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHhCChhHHHHhcC
Confidence            999999999999999999999999999  89999999999 9999888888876653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=2.2e-20  Score=184.47  Aligned_cols=153  Identities=27%  Similarity=0.326  Sum_probs=140.1

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccC------
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR------   81 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~------   81 (508)
                      .+.+..+.+|.|+||.++...+.++|++|+++|++||..|..|+||||.|+.. |+..++++|+.+|+++-..+      
T Consensus        64 a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc-g~~~i~~~li~~gA~~~avNsdg~~P  142 (527)
T KOG0505|consen   64 ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC-GYLNIVEYLIQHGANLLAVNSDGNMP  142 (527)
T ss_pred             CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc-ccHHHHHHHHHhhhhhhhccCCCCCc
Confidence            44577788999999999999999999999999999999999999999999986 99999999999998765431      


Q ss_pred             ---------------------------------------------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 010517           82 ---------------------------------------------------PGGRGGTPLHHAAKRGLEPTVRLLLSCGA  110 (508)
Q Consensus        82 ---------------------------------------------------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga  110 (508)
                                                                         ++..|.|+||.|+.+|..++.++|+++|.
T Consensus       143 ~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~  222 (527)
T KOG0505|consen  143 YDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGY  222 (527)
T ss_pred             cccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhcc
Confidence                                                               12238899999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhh
Q 010517          111 NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (508)
Q Consensus       111 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~  164 (508)
                      +++.+|.+|+||||.|+..|+.++.++|+++|++++  .....|.||+. +|..
T Consensus       223 ~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d--~~t~~g~~p~d-v~de  273 (527)
T KOG0505|consen  223 SVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMD--AKTKMGETPLD-VADE  273 (527)
T ss_pred             CcccccccCCCcccHHHHhhhHhHHHHHHHhhcccc--hhhhcCCCCcc-chhh
Confidence            999999999999999999999999999999999999  89999999999 5543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2e-20  Score=170.63  Aligned_cols=155  Identities=23%  Similarity=0.250  Sum_probs=121.4

Q ss_pred             HHcCCHHHHHHHHH-cCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHH
Q 010517           25 VIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVR  103 (508)
Q Consensus        25 a~~g~~~~v~~Ll~-~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~  103 (508)
                      ++.|+.-.|++-|+ ..-|+|.-|..|.+|||+||+. |+..+|+.|+..|+.+|..  +.-..||||+|+.+||.++|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaake-gh~aivemll~rgarvn~t--nmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKE-GHVAIVEMLLSRGARVNST--NMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhc-ccHHHHHHHHhcccccccc--cCCCCcchhhhhhcccHHHHH
Confidence            55565555554343 5567888888899999999986 8899999999999888887  556678999999999999999


Q ss_pred             HHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCC
Q 010517          104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPS  183 (508)
Q Consensus       104 ~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~  183 (508)
                      .||++.+|+|..|..|.|||||||..|+..+.+-|+..|+.++  +-|++|.|||. .|.-.-...+.++.-++|...+.
T Consensus        85 kll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~--icnk~g~tpld-kakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   85 KLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN--ICNKKGMTPLD-KAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceee--ecccCCCCchh-hhchHHHHHHHHHHHHhCCCCCc
Confidence            9999889999999999999999999999889999999998888  88889999988 55444344444555566666654


Q ss_pred             CC
Q 010517          184 KP  185 (508)
Q Consensus       184 ~~  185 (508)
                      .+
T Consensus       162 ip  163 (448)
T KOG0195|consen  162 IP  163 (448)
T ss_pred             cc
Confidence            44

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=7.8e-20  Score=166.73  Aligned_cols=135  Identities=25%  Similarity=0.269  Sum_probs=119.9

Q ss_pred             CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t   88 (508)
                      ..|.-|..|.+|||||++.|+..+|+.||.+|+.+|..+.-..||||+|+.+ ||.++|+.|+++.+|+|..  +.+|+|
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaah-ghrdivqkll~~kadvnav--nehgnt  102 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAH-GHRDIVQKLLSRKADVNAV--NEHGNT  102 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhc-ccHHHHHHHHHHhcccchh--hccCCC
Confidence            3456688899999999999999999999999999999999999999999998 9999999999999999999  899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (508)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  146 (508)
                      ||||||.-|...+.+-|+..|+.++..|++|.|||..|--.-...+.++-.+.|.+++
T Consensus       103 plhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999998754333334444455666655

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.80  E-value=3.6e-19  Score=181.67  Aligned_cols=207  Identities=22%  Similarity=0.185  Sum_probs=178.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcC-------------CCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCC
Q 010517           18 DELLYQWVIAGDVDAIRALRSQG-------------ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (508)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g-------------~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~   84 (508)
                      .+=|.-|++.|+++.|..||+..             .++|..|.+|.|+||+|+.+ |+.+++++|+++.+-+++.  |.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Ln-g~~~is~llle~ea~ldl~--d~   80 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLN-GQNQISKLLLDYEALLDLC--DT   80 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhc-CchHHHHHHhcchhhhhhh--hc
Confidence            46678899999999999999841             24578899999999999998 9999999999999999998  79


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhh
Q 010517           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  164 (508)
Q Consensus        85 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~  164 (508)
                      .|.+|||+|+..|+.++|++|+.++..+|..+..|.||||.|+++||.+++.+|+++|++.-  ++|..+.|+|. +|++
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~--i~nns~~t~ld-lA~q  157 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF--IRNNSKETVLD-LASR  157 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc--ccCcccccHHH-HHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999  99999999999 9999


Q ss_pred             cCCHHHHHHhhhCCCCC--------CCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhH
Q 010517          165 LMSRKIWVVVIPCGTAN--------PSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYK  236 (508)
Q Consensus       165 ~~~~~i~~~Ll~~g~~~--------~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~  236 (508)
                      .|..+++..|+......        ..+++...+++|.+.++++.+.+..++..        +.|  ++...+.| |+||
T Consensus       158 fgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~a--------g~d--in~~t~~g-talh  226 (854)
T KOG0507|consen  158 FGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEA--------GFD--INYTTEDG-TALH  226 (854)
T ss_pred             hhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhc--------CCC--cccccccc-hhhh
Confidence            99999999988763221        23444567889999999986665554443        556  66655554 7888


Q ss_pred             hhhhc
Q 010517          237 FASAN  241 (508)
Q Consensus       237 ~a~~~  241 (508)
                      .|+..
T Consensus       227 eaalc  231 (854)
T KOG0507|consen  227 EAALC  231 (854)
T ss_pred             hHhhc
Confidence            88854

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=2.4e-18  Score=137.49  Aligned_cols=89  Identities=36%  Similarity=0.517  Sum_probs=71.4

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHH
Q 010517           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEP  100 (508)
Q Consensus        21 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~  100 (508)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAEN-GNLEIVKLLLENGADINSQ--DKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHT-TTHHHHHHHHHTTTCTT-B--STTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHc-CCHHHHHHHHHhccccccc--CCCCCCHHHHHHHcCCHH
Confidence            6888888888888888888877766    77888888887 8888888888888888887  678888888888888888


Q ss_pred             HHHHHHHCCCCccccC
Q 010517          101 TVRLLLSCGANALVRN  116 (508)
Q Consensus       101 ~v~~Ll~~ga~~~~~d  116 (508)
                      ++++|+++|++++.+|
T Consensus        74 ~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHcCCCCCCcC
Confidence            8888888888887664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=1.4e-17  Score=141.01  Aligned_cols=124  Identities=34%  Similarity=0.527  Sum_probs=101.7

Q ss_pred             ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (508)
Q Consensus        13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~   92 (508)
                      +|.+|.|+||+|+..|+.+++++|++.+.+.+..+..|.||||+|+.. +..+++++|+++|++++..  +..|.||+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~--~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEKGADVNAR--DKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCCCCHHHH
Confidence            456788888888888888888888888888777888888888888887 7788888888888777776  6778888888


Q ss_pred             HHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q 010517           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE  139 (508)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll  139 (508)
                      |+..++.+++++|++.+.+++..+..|.|||++|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            88888888888888888778788888888888888888888887763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.76  E-value=8.8e-19  Score=183.60  Aligned_cols=212  Identities=24%  Similarity=0.220  Sum_probs=181.5

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHH
Q 010517           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (508)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~   94 (508)
                      .+-+|+|-.|+..||-|+|++|+.+|+++..+|+.|.+||.+|+-. ||..+|+.|+++.++++.+. |..+.|+|-+||
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaata-gh~tvV~~llk~ha~veaQs-drtkdt~lSlac  832 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATA-GHITVVQDLLKAHADVEAQS-DRTKDTMLSLAC  832 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhccc-CchHHHHHHHhhhhhhhhhc-ccccCceEEEec
Confidence            4457999999999999999999999999999999999999999986 99999999999999999986 899999999999


Q ss_pred             HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHh
Q 010517           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (508)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~L  174 (508)
                      ..|+.++|++||.+|++-..++...+|||.+|..-|++++|.+|+..|++++...-.+.|-.||+ +|..+||......|
T Consensus       833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm-latmngh~~at~~l  911 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM-LATMNGHQAATLSL  911 (2131)
T ss_pred             CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh-hhhhccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999985566778999999 99999999999999


Q ss_pred             hhCCCCCCCCC-ccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhh
Q 010517          175 IPCGTANPSKP-LRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (508)
Q Consensus       175 l~~g~~~~~~~-~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~  239 (508)
                      ++.|.|++..- ...++++-.+.-.+.+..+..|+...        ++  +..+-+.|-|||..++
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~--------an--vehRaktgltplme~A  967 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ--------AN--VEHRAKTGLTPLMEMA  967 (2131)
T ss_pred             hcccchhccccccccccceeeccccCcchHHHHHHHHh--------hh--hhhhcccCCcccchhh
Confidence            99999998643 23455565666566666666655442        22  3344455555555444

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.75  E-value=8.1e-18  Score=142.75  Aligned_cols=147  Identities=21%  Similarity=0.094  Sum_probs=119.4

Q ss_pred             HHHHHHHhCCCHHHHHHHHHcCCC-CcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC
Q 010517           53 PLIVACMDSGLINVAKTLIELGAN-INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (508)
Q Consensus        53 pLh~Aa~~~g~~~~v~~Ll~~ga~-~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~  131 (508)
                      -+.+|+.. +.+..|+.||+..++ +|.+  |.+|.||||-|+.+||.+||+.|+..|++++.+...|+||||-|+..++
T Consensus        66 l~lwaae~-nrl~eV~~lL~e~an~vNtr--D~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   66 LLLWAAEK-NRLTEVQRLLSEKANHVNTR--DEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHhh-ccHHHHHHHHHhcccccccc--ccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            46788887 899999999988776 7888  8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcccccccccCCCCHHHHHHhhcC-CHHHHHHhh-hCCCCCCCCCccccccccccccccChHHHH
Q 010517          132 INVVRAIESHICYFCGWLREFYGPSFLEALAPQLM-SRKIWVVVI-PCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (508)
Q Consensus       132 ~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~-~~~i~~~Ll-~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~  205 (508)
                      .+++.+||++|+|++  .......|||| +|+... ....+.+|+ ..+.+...+....++++.++-+.+....+.
T Consensus       143 ~~va~~LLqhgaDVn--A~t~g~ltpLh-laa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lf  215 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVN--AQTKGLLTPLH-LAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLF  215 (228)
T ss_pred             hhHHHHHHhccCccc--ccccccchhhH-HhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHH
Confidence            999999999999999  78888899999 666554 455566554 344455555555666666655444433333

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.73  E-value=8.2e-17  Score=136.33  Aligned_cols=125  Identities=35%  Similarity=0.475  Sum_probs=117.5

Q ss_pred             ccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHH
Q 010517           45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG  124 (508)
Q Consensus        45 ~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh  124 (508)
                      .+|.+|.||||+|+.. ++.+++++|++++.+.+..  +..|.||||+|+..++.+++++|++.|++++..+..|.||+|
T Consensus         2 ~~~~~g~t~l~~a~~~-~~~~~i~~li~~~~~~~~~--~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASN-GHLEVVKLLLENGADVNAK--DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            4578899999999998 9999999999999998777  889999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (508)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll  175 (508)
                      +|+..++.+++++|++++.+++  ..+..|.||++ .|...++.+++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADVN--ARDKDGRTPLH-LAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhcCCHHHHHHhC
Confidence            9999999999999999998888  88999999999 999999999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=1.8e-17  Score=171.66  Aligned_cols=166  Identities=20%  Similarity=0.227  Sum_probs=144.6

Q ss_pred             CcccccCCchHHHHHHHH---cCCHHHHHHHHHcCCC-CCc----cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCccc
Q 010517            9 NQHQQRQSKDELLYQWVI---AGDVDAIRALRSQGAS-LEW----MDKEGKTPLIVACMDSGLINVAKTLIELGANINAY   80 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~---~g~~~~v~~Ll~~g~~-~~~----~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~   80 (508)
                      ..+.+...|+|.||.|..   .++.++++.||+.-.. +|.    -...|+||||+|+.+ .+.++|++|++.|||++.+
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~-~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVN-RDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHh-ccHHHHHHHHHcCCchhhH
Confidence            345667899999999997   4567999999985432 121    134799999999998 9999999999999999875


Q ss_pred             C------C-C--------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q 010517           81 R------P-G--------------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE  139 (508)
Q Consensus        81 ~------~-d--------------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll  139 (508)
                      -      + |              ..|..||-+||--++.+++++|+++|||++.+|..|+|.||..+..-..++-.+++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHH
Confidence            1      0 1              13789999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCc--ccccccccCCCCHHHHHHhhcCCHHHHHHhhhCC
Q 010517          140 SHICY--FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (508)
Q Consensus       140 ~~ga~--~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g  178 (508)
                      +.|++  ..  ++|..|.|||. +|+..|..++.+.+++..
T Consensus       294 ~~ga~~l~~--v~N~qgLTPLt-LAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  294 ELGANALEH--VRNNQGLTPLT-LAAKLGKKEMFQHILERR  331 (782)
T ss_pred             hcCCCcccc--ccccCCCChHH-HHHHhhhHHHHHHHHHhh
Confidence            99999  66  89999999999 999999999999999883

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=2.6e-17  Score=131.44  Aligned_cols=86  Identities=35%  Similarity=0.470  Sum_probs=78.9

Q ss_pred             HHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHH
Q 010517           54 LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  133 (508)
Q Consensus        54 Lh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~  133 (508)
                      ||+|+.. |+.+++++|++.+.+++.      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         1 L~~A~~~-~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQN-GNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHT-TTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHc-CCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            7999998 999999999999877763      789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCccc
Q 010517          134 VVRAIESHICYFC  146 (508)
Q Consensus       134 ~v~~Ll~~ga~~~  146 (508)
                      ++++|+++|++++
T Consensus        74 ~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   74 IVKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHHTTT-TT
T ss_pred             HHHHHHHcCCCCC
Confidence            9999999999988

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.72  E-value=5.3e-18  Score=177.87  Aligned_cols=219  Identities=20%  Similarity=0.181  Sum_probs=162.9

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~   85 (508)
                      +.|++.+|+.|.+||.+|+..||..+|+.||++.++++.+ |+.+.|+|-+||. +|+.++|++||.+|++-..+  +..
T Consensus       780 ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs-ggr~~vvelLl~~gankehr--nvs  856 (2131)
T KOG4369|consen  780 GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS-GGRTRVVELLLNAGANKEHR--NVS  856 (2131)
T ss_pred             cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC-CCcchHHHHHHHhhcccccc--chh
Confidence            4678888899999999999888988888888888887654 6678888888886 47888888888888776665  556


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCccccC--CCCCcHHHHHHHhCCHHHHHHHHHcCCccccc---------------
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRN--DDCHTALGVARIKGHINVVRAIESHICYFCGW---------------  148 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~---------------  148 (508)
                      ..|||-+|...|..++|++||.+|+.||.+.  +.|-.||++|..+||.+.++.|++.|.++|..               
T Consensus       857 DytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq  936 (2131)
T KOG4369|consen  857 DYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ  936 (2131)
T ss_pred             hcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecccc
Confidence            6777777777777777777777776666543  45666777777666666666666665555421               


Q ss_pred             -----------------ccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCc--cccccccccccccChHHHHHHHH
Q 010517          149 -----------------LREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPL--RFELVIYPSLQDVQPRAVIALWK  209 (508)
Q Consensus       149 -----------------~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~--~~~~~l~~a~~~~~~~~v~~l~~  209 (508)
                                       .+-+.|.|||+ -++..|+.++-.+||..|+|.+..+.  ...+.+-+.+..++.+.+..++ 
T Consensus       937 gr~evv~lLLa~~anvehRaktgltplm-e~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~ll- 1014 (2131)
T KOG4369|consen  937 GRPEVVFLLLAAQANVEHRAKTGLTPLM-EMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLL- 1014 (2131)
T ss_pred             CcchHHHHHHHHhhhhhhhcccCCcccc-hhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhh-
Confidence                             45667899999 89999999999999999999986654  3467777778888866555433 


Q ss_pred             hhhcCCCCCCCCCcceeccCCCcchhHhhh
Q 010517          210 AKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (508)
Q Consensus       210 ~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~  239 (508)
                               ..|..+...|++|.|+|-+++
T Consensus      1015 ---------n~~atv~v~NkkG~T~Lwla~ 1035 (2131)
T KOG4369|consen 1015 ---------NGDATVRVPNKKGCTVLWLAS 1035 (2131)
T ss_pred             ---------CCccceecccCCCCcccchhc
Confidence                     234447888888888887776

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.64  E-value=1.8e-15  Score=142.05  Aligned_cols=129  Identities=29%  Similarity=0.362  Sum_probs=96.4

Q ss_pred             CccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---Ccccc
Q 010517           44 EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL-----EPTVRLLLSCGA---NALVR  115 (508)
Q Consensus        44 ~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~-----~~~v~~Ll~~ga---~~~~~  115 (508)
                      ...+..+.+++|+++.. +..+++++|+..|++++.+  |..|.||||+|+..++     .+++++|++.|+   +.+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          67 AARDLDGRLPLHSAASK-GDDKIVKLLLASGADVNAK--DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             ccCCccccCHHHHHHHc-CcHHHHHHHHHcCCCcccc--cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            34556677777777776 7777777777777777766  6777777777777777     777777777777   45555


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCC
Q 010517          116 NDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (508)
Q Consensus       116 d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g  178 (508)
                      |..|.||||+|+..|+.+++++|++.|++++  .++..|.|+++ .|...++.++++.++..+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADPN--SRNSYGVTALD-PAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCCc--ccccCCCcchh-hhcccchHHHHHHHHhcC
Confidence            7777777777777777777777777777777  66777777777 777777777777777765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=1.5e-15  Score=115.36  Aligned_cols=99  Identities=29%  Similarity=0.388  Sum_probs=53.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCH
Q 010517           20 LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE   99 (508)
Q Consensus        20 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~   99 (508)
                      -++|++++|.++-|+.....|.++|..- .|++|||||+-. |..+++++|+..|++++.+  |+.|-|||.-|+..||.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~-GQl~ilefli~iGA~i~~k--DKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADY-GQLSILEFLISIGANIQDK--DKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhc-chHHHHHHHHHhccccCCc--cccCCcHHHHHHHHhhH
Confidence            3455555555555555555555544432 455555555554 5555555555555555544  55555555555555555


Q ss_pred             HHHHHHHHCCCCccccCCCCCcH
Q 010517          100 PTVRLLLSCGANALVRNDDCHTA  122 (508)
Q Consensus       100 ~~v~~Ll~~ga~~~~~d~~g~Tp  122 (508)
                      ++|++||+.|++-.....+|.+.
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~  103 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTAL  103 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhH
Confidence            55555555555554444455443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.62  E-value=2.3e-15  Score=114.41  Aligned_cols=102  Identities=26%  Similarity=0.292  Sum_probs=94.7

Q ss_pred             hHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC
Q 010517           52 TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (508)
Q Consensus        52 TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~  131 (508)
                      --++|+..+ |.++-|+..+..|-++|..   ..|++|||||+-+|..+++++|+..|++++..|++|-|||.-|+..||
T Consensus         4 ~~~~W~vkN-G~~DeVk~~v~~g~nVn~~---~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKN-GEIDEVKQSVNEGLNVNEI---YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhcc-CcHHHHHHHHHccccHHHH---hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhh
Confidence            456788987 9999999999999888864   589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcccccccccCCCCHHH
Q 010517          132 INVVRAIESHICYFCGWLREFYGPSFLE  159 (508)
Q Consensus       132 ~~~v~~Ll~~ga~~~~~~~~~~g~tpL~  159 (508)
                      .++|++||++|++-.  .+-.+|.+.+.
T Consensus        80 ~~cVklLL~~GAdrt--~~~PdG~~~~e  105 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRT--IHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHHHcCcccc--eeCCCchhHHh
Confidence            999999999999988  88888988887

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.62  E-value=2e-15  Score=156.67  Aligned_cols=125  Identities=26%  Similarity=0.286  Sum_probs=117.1

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCcc---------C--------------CCCChHHHHHHHhCCCHHHHHHH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWM---------D--------------KEGKTPLIVACMDSGLINVAKTL   70 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~---------d--------------~~G~TpLh~Aa~~~g~~~~v~~L   70 (508)
                      ...|.|+||+|+.+.+.++|++||+.||||+++         |              ..|..||-+||.. ++.||+++|
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~-nq~eivrlL  259 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACT-NQPEIVRLL  259 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHc-CCHHHHHHH
Confidence            457999999999999999999999999999754         1              1378899999997 999999999


Q ss_pred             HHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--ccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 010517           71 IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN--ALVRNDDCHTALGVARIKGHINVVRAIESH  141 (508)
Q Consensus        71 l~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~  141 (508)
                      +++|+|++.+  |..|+|.||..+.+-..++..++|++|++  ...+|+.|.|||.+|++.|+.++.+.+++.
T Consensus       260 l~~gAd~~aq--DS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  260 LAHGADPNAQ--DSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCCCCCcc--ccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999  99999999999999999999999999999  899999999999999999999999999998

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.59  E-value=2.7e-14  Score=134.06  Aligned_cols=130  Identities=35%  Similarity=0.399  Sum_probs=120.7

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCC-----HHHHHHHHHcCC---CCcccC
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL-----INVAKTLIELGA---NINAYR   81 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~-----~~~v~~Ll~~ga---~~n~~~   81 (508)
                      .+.++..+.+++|+++..++..++++|+..|++++.+|.+|.||||+|+.. ++     .+++++|++.|+   ..+.+ 
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~~~ll~~g~~~~~~~~~-  143 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN-GNPPEGNIEVAKLLLEAGADLDVNNLR-  143 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhc-CCcccchHHHHHHHHHcCCCCCCcccc-
Confidence            345566789999999999999999999999999999999999999999997 88     999999999999   55555 


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 010517           82 PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  142 (508)
Q Consensus        82 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  142 (508)
                       |..|+||||+|+..|+.+++++|++.|++++..+..|.|+|++|+..++.++++.|++.+
T Consensus       144 -~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         144 -DEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             -CCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence             889999999999999999999999999999999999999999999999999999999886

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.58  E-value=1.2e-14  Score=132.98  Aligned_cols=123  Identities=31%  Similarity=0.351  Sum_probs=114.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~   95 (508)
                      .-..+|.-+...|+.+....||+---++|.+|..|+|+|+.|+.+ |+.++|++||+.|+|+|... +..+.||||+|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAayk-Gnl~~v~lll~~gaDvN~~q-hg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYK-GNLTLVELLLELGADVNDKQ-HGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhc-CcHHHHHHHHHhCCCcCccc-ccccccHHHHHHH
Confidence            346899999999999999999997556899999999999999998 99999999999999999864 7889999999999


Q ss_pred             cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 010517           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  140 (508)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~  140 (508)
                      .|+.++.++|++.|+.....|.-|+|+-.+|+.-|+.++|.++-.
T Consensus        89 SGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             cCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            999999999999999999999999999999999999999987743

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.53  E-value=4.5e-14  Score=152.99  Aligned_cols=106  Identities=32%  Similarity=0.432  Sum_probs=98.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCC
Q 010517           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (508)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~   98 (508)
                      ..||.|+..|+.+.|++|++.|+++|.+|..|.||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|+..|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~-g~~eiv~~LL~~Gadvn~~--d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGADPTLL--DKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCCc
Confidence            458999999999999999999999999999999999999997 9999999999999999998  8899999999999999


Q ss_pred             HHHHHHHHHC-------CCCccccCCCCCcHHHHHH
Q 010517           99 EPTVRLLLSC-------GANALVRNDDCHTALGVAR  127 (508)
Q Consensus        99 ~~~v~~Ll~~-------ga~~~~~d~~g~TpLh~A~  127 (508)
                      .+++++|+++       |++++..+..|.+|+..+.
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999998       8888888888888876554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.51  E-value=7.5e-14  Score=151.28  Aligned_cols=102  Identities=29%  Similarity=0.301  Sum_probs=96.0

Q ss_pred             HHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCH
Q 010517           53 PLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI  132 (508)
Q Consensus        53 pLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~  132 (508)
                      .||.|+.. |+.+++++|+++|+++|.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus        85 ~L~~aa~~-G~~~~vk~LL~~Gadin~~--d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAAS-GDAVGARILLTGGADPNCR--DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            58899987 9999999999999999998  88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc-------CCcccccccccCCCCHHH
Q 010517          133 NVVRAIESH-------ICYFCGWLREFYGPSFLE  159 (508)
Q Consensus       133 ~~v~~Ll~~-------ga~~~~~~~~~~g~tpL~  159 (508)
                      +++++|+++       |++.+  ..+..|.+|+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~--~~~~~g~~~~~  193 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAK--PDSFTGKPPSL  193 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCC--ccccCCCCccc
Confidence            999999999       78777  77888887777

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.1e-15  Score=102.25  Aligned_cols=54  Identities=41%  Similarity=0.976  Sum_probs=50.5

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccceeEeeeC
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRLYTV  508 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~i~i~~~  508 (508)
                      .+|.||+|.+.+.|+..|||++.|++|..++++. ...||+||++|.++|+-|++
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s   62 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS   62 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence            6999999999999999999999999999999884 67899999999999999874

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=8e-14  Score=137.09  Aligned_cols=121  Identities=28%  Similarity=0.332  Sum_probs=93.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~   95 (508)
                      +-.-.|.-|+..|.+++|+.++..--|+...|.+|.|+||-|+.. ||.+||++|++.|+++|..  |.+||||||.|+.
T Consensus       549 nPLaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCa-ghyeIVkFLi~~ganVNa~--DSdGWTPLHCAAS  625 (752)
T KOG0515|consen  549 NPLALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICA-GHYEIVKFLIEFGANVNAA--DSDGWTPLHCAAS  625 (752)
T ss_pred             chHHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhc-chhHHHHHHHhcCCcccCc--cCCCCchhhhhhh
Confidence            334556778888888888888887777878888888888888875 8888888888888888887  8888888888888


Q ss_pred             cCCHHHHHHHHHCCCCccccC-CCCCcHHHHHH--HhCCHHHHHHHH
Q 010517           96 RGLEPTVRLLLSCGANALVRN-DDCHTALGVAR--IKGHINVVRAIE  139 (508)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~--~~g~~~~v~~Ll  139 (508)
                      .++..+++.|++.|+-|.... .++.|+..-+-  ..|+..|.+||-
T Consensus       626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             cCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            888888888888887765543 46667665443  456777777774

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=5.8e-14  Score=101.07  Aligned_cols=55  Identities=42%  Similarity=0.501  Sum_probs=21.9

Q ss_pred             HHHcC-CCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517           36 LRSQG-ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (508)
Q Consensus        36 Ll~~g-~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A   93 (508)
                      ||++| ++++.+|..|+||||+||.. |+.+++++|++.|++++.+  |..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~-g~~~~v~~Ll~~g~d~~~~--d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARY-GHSEVVRLLLQNGADPNAK--DKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHH-T-HHHHHHHHHCT--TT-----TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHc-CcHHHHHHHHHCcCCCCCC--cCCCCCHHHhC
Confidence            45555 56666666666666666665 6666666666666666666  56666666665

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.44  E-value=1e-13  Score=99.84  Aligned_cols=55  Identities=45%  Similarity=0.631  Sum_probs=28.1

Q ss_pred             HHHcC-CCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHH
Q 010517           70 LIELG-ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA  126 (508)
Q Consensus        70 Ll~~g-a~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A  126 (508)
                      ||++| +++|.+  |..|+||||+|+.+|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~--d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQ--DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT-----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCc--CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56677 777777  77888888888888888888888888888888888888888876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.43  E-value=2.9e-13  Score=96.86  Aligned_cols=54  Identities=28%  Similarity=0.449  Sum_probs=28.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHH
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI   71 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll   71 (508)
                      |.|+||+|++.|+.+++++|+++|+|+|.+|.+|.||||+|+.. |+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~-g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKN-GNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHT-T-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-cCHHHHHHHC
Confidence            44556666666666666666655555555555566666666654 5556655554

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.41  E-value=4.8e-13  Score=95.69  Aligned_cols=53  Identities=40%  Similarity=0.596  Sum_probs=23.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHH
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI  138 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~L  138 (508)
                      |+||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34445555555555555555544444444444455555555555555554444

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=1.7e-12  Score=119.03  Aligned_cols=120  Identities=23%  Similarity=0.221  Sum_probs=110.1

Q ss_pred             CChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc-cCCCCCcHHHHHHH
Q 010517           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALV-RNDDCHTALGVARI  128 (508)
Q Consensus        50 G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~TpLh~A~~  128 (508)
                      -..+|..++-+ +..+-...||+.--++|.+  |..|+|+|+.|+.+|+.++|++||+.|+|+|. ++..++||||.|+.
T Consensus        12 ~~~~Lle~i~K-ndt~~a~~LLs~vr~vn~~--D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   12 PKSPLLEAIDK-NDTEAALALLSTVRQVNQR--DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhHHHHHHcc-CcHHHHHHHHHHhhhhhcc--CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            46789999987 8999999999886779998  88999999999999999999999999999985 45789999999999


Q ss_pred             hCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (508)
Q Consensus       129 ~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll  175 (508)
                      .|+.++-++|++.|+...  ..|.-|+|+-. +|+.-|+.++|.++-
T Consensus        89 SGn~dvcrllldaGa~~~--~vNsvgrTAaq-mAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMY--LVNSVGRTAAQ-MAAFVGHHECVAIIN  132 (396)
T ss_pred             cCCchHHHHHHhccCccc--cccchhhhHHH-HHHHhcchHHHHHHh
Confidence            999999999999999998  88999999999 999999999998653

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=2.1e-12  Score=127.24  Aligned_cols=121  Identities=17%  Similarity=0.108  Sum_probs=104.8

Q ss_pred             HHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHH
Q 010517           54 LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  133 (508)
Q Consensus        54 Lh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~  133 (508)
                      |.-|+.. |.+++|+.++..--|+..-  +..|.||||-|+..||.+||++||++|+++|..|.+|+||||.|+..+++.
T Consensus       554 LLDaaLe-GEldlVq~~i~ev~DpSqp--NdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALE-GELDLVQRIIYEVTDPSQP--NDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhc-chHHHHHHHHHhhcCCCCC--CccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            4446666 9999999999987788766  889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCcccccccccCCCCHHHHHH--hhcCCHHHHHHhhhCCC
Q 010517          134 VVRAIESHICYFCGWLREFYGPSFLEALA--PQLMSRKIWVVVIPCGT  179 (508)
Q Consensus       134 ~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A--~~~~~~~i~~~Ll~~g~  179 (508)
                      +++.|++.|+-+.. ..-.++.|+.. -+  -+.|+..|..||..-..
T Consensus       631 ~ckqLVe~GaavfA-sTlSDmeTa~e-KCee~eeGY~~CsqyL~~vqe  676 (752)
T KOG0515|consen  631 MCKQLVESGAAVFA-STLSDMETAAE-KCEEMEEGYDQCSQYLYGVQE  676 (752)
T ss_pred             HHHHHHhccceEEe-eecccccchhh-hcchhhhhHHHHHHHHHHHHH
Confidence            99999999987763 55567889988 44  35788899999865433

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.29  E-value=1.7e-12  Score=90.87  Aligned_cols=49  Identities=37%  Similarity=0.956  Sum_probs=42.6

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccce
Q 010517          454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  502 (508)
Q Consensus       454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  502 (508)
                      +..|.||++...+++++||||.++|..|+.++...+..||+||++|.++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV   50 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence            3689999999999999999999559999999988778999999999864

...

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=4.8e-12  Score=115.86  Aligned_cols=51  Identities=37%  Similarity=0.959  Sum_probs=48.9

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517          454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  508 (508)
Q Consensus       454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~  508 (508)
                      ...|.||||.+++.+|++|||++.|..|.++|..    ||+||+.|.++++||+|
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~e----CPICRqyi~rvvrif~~  350 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNE----CPICRQYIVRVVRIFRV  350 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcccccc----CchHHHHHHHHHhhhcC
Confidence            6799999999999999999999999999999985    99999999999999986

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.9e-11  Score=115.30  Aligned_cols=56  Identities=29%  Similarity=0.866  Sum_probs=51.6

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeee
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  507 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~  507 (508)
                      ++..+|+|||...++++++||+|.+.|..|++.+.-+...||+||++|...+.||.
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence            44579999999999999999999999999999999777789999999999998874

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.97  E-value=6e-10  Score=108.90  Aligned_cols=89  Identities=28%  Similarity=0.325  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHc-CCCCcccCCCCCCCcHHHHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAA   94 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~n~~~~d~~g~tpLh~A~   94 (508)
                      ++...+++|++.|++..++.+.-.|.|++.+|.+.+|+||+||.. |+++++++|++. +.+++.+  |.+|+|||.-|.
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE-G~v~v~kfl~~~~kv~~~~k--DRw~rtPlDdA~  581 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE-GHVEVVKFLLNACKVDPDPK--DRWGRTPLDDAK  581 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc-CceeHHHHHHHHHcCCCChh--hccCCCcchHhH
Confidence            344555555555555555555555555555555555555555554 555555555544 4455554  555555555555


Q ss_pred             HcCCHHHHHHHHH
Q 010517           95 KRGLEPTVRLLLS  107 (508)
Q Consensus        95 ~~g~~~~v~~Ll~  107 (508)
                      ..+|.+++++|-+
T Consensus       582 ~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  582 HFKHKEVVKLLEE  594 (622)
T ss_pred             hcCcHHHHHHHHH
Confidence            5555555555544

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.3e-09  Score=93.46  Aligned_cols=51  Identities=35%  Similarity=0.876  Sum_probs=44.2

Q ss_pred             cccccccccCCceE--EeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010517          455 SSCVICWEAPVEGA--CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  506 (508)
Q Consensus       455 ~~C~iC~~~~~~~~--~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~  506 (508)
                      ..|+|||+.....+  ...|||.| |..|++...+...+||+||+.|.  ++++||
T Consensus       132 ~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~  186 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY  186 (187)
T ss_pred             cCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence            69999999865444  46999999 99999999887789999999886  588887

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=7.7e-10  Score=99.37  Aligned_cols=56  Identities=32%  Similarity=0.820  Sum_probs=49.2

Q ss_pred             CCCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc---CCcccccccccc--ceeEee
Q 010517          450 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKIN--QVIRLY  506 (508)
Q Consensus       450 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~--~~i~i~  506 (508)
                      .++....|.||+|..+++|+..|||.| |+.|+.+|...   ++.||+|+..|.  ++|.||
T Consensus        43 ~~~~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   43 RDGGFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CCCCceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            355667999999999999999999999 99999999875   346999999986  688988

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.92  E-value=1.2e-09  Score=96.49  Aligned_cols=54  Identities=26%  Similarity=0.796  Sum_probs=45.8

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc----------------CCcccccccccc--ceeEee
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK----------------KGDCPVCRTKIN--QVIRLY  506 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~----------------~~~CP~Cr~~i~--~~i~i~  506 (508)
                      +++..|+||++...+++..+|||.| |+.|+..|...                ...||+||.+|.  +.++||
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            3557999999999999999999999 99999988531                247999999996  477776

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.92  E-value=4.9e-09  Score=103.09  Aligned_cols=100  Identities=29%  Similarity=0.381  Sum_probs=87.7

Q ss_pred             CCccCCCCChH------HHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC
Q 010517           43 LEWMDKEGKTP------LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN  116 (508)
Q Consensus        43 ~~~~d~~G~Tp------Lh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d  116 (508)
                      +-.+|.+|.|+      ||-.++. |+.++.--||..|+++|..++ ..|.||||.|++.|+...+++|+-+|||++..|
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt-~nlet~LRll~lGA~~N~~hp-ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d  197 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRT-GNLETCLRLLSLGAQANFFHP-EKGNTPLHVAAKAGQILQAELLAVYGADPGAQD  197 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhc-ccHHHHHHHHHcccccCCCCc-ccCCchhHHHHhccchhhhhHHhhccCCCCCCC
Confidence            34567777765      7777775 999999999999999999974 689999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517          117 DDCHTALGVARIKGHINVVRAIESHICY  144 (508)
Q Consensus       117 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~  144 (508)
                      .+|.||+.||-..||-++.+.|++...+
T Consensus       198 ~~GmtP~~~AR~~gH~~laeRl~e~~y~  225 (669)
T KOG0818|consen  198 SSGMTPVDYARQGGHHELAERLVEIQYE  225 (669)
T ss_pred             CCCCcHHHHHHhcCchHHHHHHHHHHHH
Confidence            9999999999999999999888876433

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.91  E-value=7e-10  Score=114.98  Aligned_cols=94  Identities=20%  Similarity=0.252  Sum_probs=82.2

Q ss_pred             HHHHH-HcCCC-CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 010517           33 IRALR-SQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA  110 (508)
Q Consensus        33 v~~Ll-~~g~~-~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga  110 (508)
                      ++-.+ +.+.+ .|.+|..|+|+||+|+.. +..+++++||++|++++.+| -..|+||||-|+.+|+.+++-+||.+|+
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~-~k~~~l~wLlqhGidv~vqD-~ESG~taLHRaiyyG~idca~lLL~~g~  110 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSE-NKNSFLRWLLQHGIDVFVQD-EESGYTALHRAIYYGNIDCASLLLSKGR  110 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeecc-chhHHHHHHHhcCceeeecc-ccccchHhhHhhhhchHHHHHHHHhcCC
Confidence            44333 34433 577899999999999987 99999999999999999996 5789999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHH
Q 010517          111 NALVRNDDCHTALGVARI  128 (508)
Q Consensus       111 ~~~~~d~~g~TpLh~A~~  128 (508)
                      .+..+|++|..||..-++
T Consensus       111 SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  111 SLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ceEEecccCCCHHHHHhh
Confidence            999999999999988776

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.6e-09  Score=100.27  Aligned_cols=47  Identities=36%  Similarity=0.959  Sum_probs=44.0

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      ....|.+|+|...++...||||.| |++|+..|...+..||+||+++.
T Consensus       238 a~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~  284 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQ  284 (293)
T ss_pred             CCCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCC
Confidence            336999999999999999999999 99999999998889999999986

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.84  E-value=1.2e-08  Score=101.63  Aligned_cols=119  Identities=21%  Similarity=0.259  Sum_probs=102.4

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCC--CcccCCCCCCCcHHHHHHHcCC
Q 010517           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN--INAYRPGGRGGTPLHHAAKRGL   98 (508)
Q Consensus        21 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~--~n~~~~d~~g~tpLh~A~~~g~   98 (508)
                      |..|+..+++--+..+-..|.++-.++.+..|.||||+.. |+-++|++||.+|..  ++..  |..|.|+||.|+..++
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~t-g~~eivkyildh~p~elld~~--de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKT-GNGEIVKYILDHGPSELLDMA--DETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhc-CChHHHHHHHhcCCHHHHHHH--hhhhhHHHHHHHHhcc
Confidence            6677778887777777778888888899999999999987 999999999999865  4555  7889999999999999


Q ss_pred             HHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 010517           99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  142 (508)
Q Consensus        99 ~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  142 (508)
                      ..+.++|++.|+.+...|..|.||-.-|-+.|..++..+|..+.
T Consensus       947 r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             hHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            99999999999999999999999999999999999998887653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.82  E-value=1.5e-08  Score=99.68  Aligned_cols=93  Identities=28%  Similarity=0.324  Sum_probs=84.6

Q ss_pred             ccCCchH------HHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCC
Q 010517           13 QRQSKDE------LLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (508)
Q Consensus        13 ~~~~g~t------~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~   85 (508)
                      +|.+|.+      -||-.++.|+.+..-.||..|+++|..+. .|.||||.|++. |...-+++|+-+|+|++..  |..
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~-Gq~~Q~ElL~vYGAD~~a~--d~~  199 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKA-GQILQAELLAVYGADPGAQ--DSS  199 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhc-cchhhhhHHhhccCCCCCC--CCC
Confidence            4555544      59999999999999999999999999986 699999999998 9999999999999999998  899


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHC
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSC  108 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~  108 (508)
                      |+||+.||-..||-++.+.|++.
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHHH
Confidence            99999999999999999888864

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.80  E-value=2.7e-09  Score=110.79  Aligned_cols=83  Identities=22%  Similarity=0.213  Sum_probs=78.6

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t   88 (508)
                      .|.+|..|+|+||+|+..|..+++++||++|+|++.+|. .|+||||-|+.. |+++++-+||++|+.+.++  |+.|..
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyy-G~idca~lLL~~g~SL~i~--Dkegls  121 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYY-GNIDCASLLLSKGRSLRIK--DKEGLS  121 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhh-chHHHHHHHHhcCCceEEe--cccCCC
Confidence            567899999999999999999999999999999999997 699999999998 9999999999999999999  899999


Q ss_pred             HHHHHHH
Q 010517           89 PLHHAAK   95 (508)
Q Consensus        89 pLh~A~~   95 (508)
                      ||..-++
T Consensus       122 plq~~~r  128 (1267)
T KOG0783|consen  122 PLQFLSR  128 (1267)
T ss_pred             HHHHHhh
Confidence            9988776

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.77  E-value=1.9e-08  Score=100.85  Aligned_cols=89  Identities=27%  Similarity=0.377  Sum_probs=57.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC--CC--ccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517           20 LLYQWVIAGDVDAIRALRSQGAS--LE--WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (508)
Q Consensus        20 ~L~~Aa~~g~~~~v~~Ll~~g~~--~~--~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~   95 (508)
                      -|..|+...++..+-+||.+|..  +|  .-+.+|+|+||+||.. |++.+.++|+-+|+|+-.+  |.+|+|+|.||-.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~-gnVvl~QLLiWyg~dv~~r--da~g~t~l~yar~  703 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARK-GNVVLAQLLIWYGVDVMAR--DAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhh-cchhHHHHHHHhCccceec--ccCCchhhhhHhh
Confidence            35556666666666667766643  22  2345566777777766 6777777777777776666  6677777777777


Q ss_pred             cCCHHHHHHHHHCCCC
Q 010517           96 RGLEPTVRLLLSCGAN  111 (508)
Q Consensus        96 ~g~~~~v~~Ll~~ga~  111 (508)
                      .|.-+++..||.+|+.
T Consensus       704 a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCP  719 (749)
T ss_pred             cccHHHHHHHHHcCCC
Confidence            7777777777776653

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.76  E-value=4.3e-09  Score=69.30  Aligned_cols=38  Identities=37%  Similarity=0.983  Sum_probs=33.2

Q ss_pred             cccccccCCce-EEeCCCCchhhHHhHHHHhccCCccccc
Q 010517          457 CVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVC  495 (508)
Q Consensus       457 C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~CP~C  495 (508)
                      |+||++...++ ++++|||.| |++|+.++...+.+||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence            89999999999 688999999 999999988878899998

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.76  E-value=8.2e-09  Score=101.12  Aligned_cols=93  Identities=20%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             CCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCCcHHHHH
Q 010517           48 KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC-GANALVRNDDCHTALGVA  126 (508)
Q Consensus        48 ~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~TpLh~A  126 (508)
                      .++...+++|++. |.+..++.+.-.|.|++.+  |.+.+|+||.||..|+.+++++||+. +.+++.+|..|+|||.-|
T Consensus       504 ~~~~i~~~~aa~~-GD~~alrRf~l~g~D~~~~--DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  504 NDTVINVMYAAKN-GDLSALRRFALQGMDLETK--DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccchhhhhhhhhc-CCHHHHHHHHHhccccccc--ccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            4567788888886 8888888888888888887  77778888888888888888888865 678888888888888888


Q ss_pred             HHhCCHHHHHHHHHcCC
Q 010517          127 RIKGHINVVRAIESHIC  143 (508)
Q Consensus       127 ~~~g~~~~v~~Ll~~ga  143 (508)
                      ...+|.+++++|.+...
T Consensus       581 ~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhcCcHHHHHHHHHHhc
Confidence            88888888888876644

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.3e-09  Score=102.48  Aligned_cols=53  Identities=36%  Similarity=0.898  Sum_probs=48.3

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  508 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~  508 (508)
                      .....|+||++.+.+.+|+||||+++|..|...+.+    ||+||+.|...+++|++
T Consensus       303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~----CPvCR~rI~~~~k~y~~  355 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQ----CPVCRQRIRLVRKRYRS  355 (355)
T ss_pred             CCCCceEEecCCccceeeecCCcEEEchHHHhhCCC----CchhHHHHHHHHHHhcC
Confidence            344799999999999999999999999999998876    99999999999999874

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.74  E-value=4.6e-09  Score=71.28  Aligned_cols=40  Identities=40%  Similarity=0.888  Sum_probs=35.4

Q ss_pred             ccccccccC---CceEEeCCCCchhhHHhHHHHhccCCcccccc
Q 010517          456 SCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCR  496 (508)
Q Consensus       456 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr  496 (508)
                      .|+||++..   ..++.++|||.| |..|+..|.+.+..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence            699999985   577788999999 9999999998888999998

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.72  E-value=9.2e-09  Score=95.26  Aligned_cols=51  Identities=37%  Similarity=0.840  Sum_probs=43.3

Q ss_pred             ccccccccccCCc--------eEEeCCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010517          454 SSSCVICWEAPVE--------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  505 (508)
Q Consensus       454 ~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i  505 (508)
                      +.+|+||++...+        .+..+|+|.| |..|+..|...+..||+||.++..+++-
T Consensus       174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~  232 (238)
T PHA02929        174 DKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKS  232 (238)
T ss_pred             CCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence            3699999997543        3566899999 9999999988888999999999987765

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.66  E-value=1.4e-08  Score=67.59  Aligned_cols=38  Identities=37%  Similarity=0.905  Sum_probs=30.7

Q ss_pred             cccccccCCceEEeCCCCchhhHHhHHHHhccC----Cccccc
Q 010517          457 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK----GDCPVC  495 (508)
Q Consensus       457 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CP~C  495 (508)
                      |+||++.+.+++.++|||.| |..|+.++++..    ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999 999999998763    259987

>PF13606 Ank_3: Ankyrin repeat

Probab=98.65  E-value=3.4e-08  Score=60.68  Aligned_cols=27  Identities=44%  Similarity=0.748  Sum_probs=11.4

Q ss_pred             CChHHHHHHHhCCCHHHHHHHHHcCCCC
Q 010517           50 GKTPLIVACMDSGLINVAKTLIELGANI   77 (508)
Q Consensus        50 G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~   77 (508)
                      |+||||+||.. |+.++|++|+++|+|+
T Consensus         2 G~T~Lh~A~~~-g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASN-GNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHh-CCHHHHHHHHHcCCCC
Confidence            34444444443 4444444444444443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.64  E-value=4.5e-08  Score=61.88  Aligned_cols=30  Identities=43%  Similarity=0.610  Sum_probs=14.2

Q ss_pred             CChHHHHHHHhCCCHHHHHHHHHcCCCCccc
Q 010517           50 GKTPLIVACMDSGLINVAKTLIELGANINAY   80 (508)
Q Consensus        50 G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~   80 (508)
                      |.||||+|+.+ |+.+++++|+++|++++.+
T Consensus         2 G~TpLh~A~~~-~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    2 GNTPLHYAAQR-GHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             SBBHHHHHHHT-TCHHHHHHHHHTTSCTTCB
T ss_pred             cccHHHHHHHH-HHHHHHHHHHHCcCCCCCC
Confidence            44444444444 4444444444444444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.63  E-value=3.7e-08  Score=60.50  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEW   45 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~   45 (508)
                      +|+||||+|+..|+.++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.62  E-value=4.7e-08  Score=61.82  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=31.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDK   48 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~   48 (508)
                      +|.||||+|+..|+.+++++||++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.59  E-value=1.7e-07  Score=93.73  Aligned_cols=118  Identities=18%  Similarity=0.104  Sum_probs=102.1

Q ss_pred             HHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--ccccCCCCCcHHHHHHHhCC
Q 010517           54 LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN--ALVRNDDCHTALGVARIKGH  131 (508)
Q Consensus        54 Lh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~TpLh~A~~~g~  131 (508)
                      |..|+.. +.+--++.+...|.++-.+  +.+..+-||||+..|+-++|++||++|-.  ++..|..|.|+||-|+..++
T Consensus       870 il~av~~-~D~~klqE~h~~gg~ll~~--~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLS-SDLMKLQETHLNGGSLLIQ--GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHh-ccHHHHHHHHhcCCceEee--CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            4455555 5555566667778888888  77888999999999999999999999853  56778999999999999999


Q ss_pred             HHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhC
Q 010517          132 INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (508)
Q Consensus       132 ~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~  177 (508)
                      ..+..+|++.|+.+.  ..|..|.||-. -|-+.|..+++.+|-..
T Consensus       947 r~vc~~lvdagasl~--ktd~kg~tp~e-raqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASLR--KTDSKGKTPQE-RAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHHHhcchhhe--ecccCCCChHH-HHHhcCCchHHHHHhhh
Confidence            999999999999998  89999999999 99999999999988654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.59  E-value=2e-07  Score=98.43  Aligned_cols=123  Identities=16%  Similarity=0.096  Sum_probs=103.5

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQG----ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g----~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp   89 (508)
                      ...+.-....|++.|+...|+.+++..    .++|.+|.-|+++|++|..+ .+.|++++|++++...  .       .+
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~n-enle~~eLLl~~~~~~--g-------dA   91 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDN-ENLELQELLLDTSSEE--G-------DA   91 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccc-ccHHHHHHHhcCcccc--c-------hH
Confidence            445667788999999999999999843    46889999999999999987 9999999999997555  2       48


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCc----------cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANA----------LVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~----------~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  146 (508)
                      |.+|+..|..++|++++.+-...          ...-..+-|||.+|+..+|.||+++|+.+|+.+.
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            99999999999999999874322          1223467899999999999999999999998875

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.57  E-value=1.4e-07  Score=94.34  Aligned_cols=127  Identities=20%  Similarity=0.209  Sum_probs=88.0

Q ss_pred             HHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC
Q 010517           20 LLYQWVIAGDVDAIRALRS--QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (508)
Q Consensus        20 ~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g   97 (508)
                      +||+++...+.+-+..++.  ....++.+|..|.||||+|+.. |+.+.++.|+..|+++..+  |+.||+|||.|+..|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~L-g~~~~a~~Ll~a~Adv~~k--N~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRL-GHVEAARILLSAGADVSIK--NNEGWSPLHEAVSTG   99 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHh-cCHHHHHHHHhcCCCcccc--ccccccHHHHHHHcC
Confidence            4888888877766665443  3346788888899999999987 8899999999999988888  888999999999999


Q ss_pred             CHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHH
Q 010517           98 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE  159 (508)
Q Consensus        98 ~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~  159 (508)
                      +.+++..+|.+--.   +     +  -.-...+...+++.|.+.+-.+....-+...+-||-
T Consensus       100 ~~q~i~~vlr~~~~---q-----~--~~~~~~~~p~ll~~l~~~~DFYmE~~wdF~SWvPlv  151 (560)
T KOG0522|consen  100 NEQIITEVLRHLKY---Q-----A--WEKWERRLPRLLAKLSEMPDFYMEMKWDFQSWIPLL  151 (560)
T ss_pred             CHHHHHHHHHHhHH---H-----H--HHHHHhcchHHHHHHHhCccceEEEEecceeehhhh
Confidence            88887777654210   0     0  011224455666666666544443344555566665

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.55  E-value=1.8e-07  Score=93.59  Aligned_cols=89  Identities=26%  Similarity=0.393  Sum_probs=74.1

Q ss_pred             hHHHHHHHhCCCHHHHHHHHHc-CCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC
Q 010517           52 TPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (508)
Q Consensus        52 TpLh~Aa~~~g~~~~v~~Ll~~-ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g  130 (508)
                      -|||+++.......+.+.|+.. +..++.+  |..|+||||+|+..|+.+.++.|+..|+++..+|+.|++|||.|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~--D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRR--DPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccc--cCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcC
Confidence            4599999873344455544444 4456666  889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcC
Q 010517          131 HINVVRAIESHI  142 (508)
Q Consensus       131 ~~~~v~~Ll~~g  142 (508)
                      +.+++..++.+-
T Consensus       100 ~~q~i~~vlr~~  111 (560)
T KOG0522|consen  100 NEQIITEVLRHL  111 (560)
T ss_pred             CHHHHHHHHHHh
Confidence            999888887663

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.52  E-value=2.6e-07  Score=92.85  Aligned_cols=89  Identities=25%  Similarity=0.185  Sum_probs=62.4

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCc----cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANA----LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~----~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~  165 (508)
                      |.-|+...+...+-+||.+|...    ..-+.+|+|+||+|++.|++.+.++|+-+|+|+.  .+|..|+|+|. +|-+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~--~rda~g~t~l~-yar~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM--ARDAHGRTALF-YARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce--ecccCCchhhh-hHhhc
Confidence            55666666666667777776432    2334566777777777777777777777777777  77777777777 77777


Q ss_pred             CCHHHHHHhhhCCCCC
Q 010517          166 MSRKIWVVVIPCGTAN  181 (508)
Q Consensus       166 ~~~~i~~~Ll~~g~~~  181 (508)
                      |..+++.+|+.+|...
T Consensus       705 ~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPD  720 (749)
T ss_pred             ccHHHHHHHHHcCCCc
Confidence            7777777777777643

>PHA02926 zinc finger-like protein; Provisional

Probab=98.49  E-value=7.3e-08  Score=85.99  Aligned_cols=51  Identities=27%  Similarity=0.800  Sum_probs=40.3

Q ss_pred             CccccccccccCC---------ceEEeCCCCchhhHHhHHHHhccC------CccccccccccceeE
Q 010517          453 SSSSCVICWEAPV---------EGACVPCGHMAGCMSCLSEIKAKK------GDCPVCRTKINQVIR  504 (508)
Q Consensus       453 ~~~~C~iC~~~~~---------~~~~~pCgH~~~C~~C~~~~~~~~------~~CP~Cr~~i~~~i~  504 (508)
                      .+.+|.||||...         -.++.+|+|.| |..|+..|...+      ..||+||..+..+++
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p  234 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM  234 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence            4479999999732         25677999999 999999998742      359999999885543

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.39  E-value=2.4e-07  Score=62.63  Aligned_cols=41  Identities=39%  Similarity=0.972  Sum_probs=34.6

Q ss_pred             ccccccccC---CceEEeCCCCchhhHHhHHHHhccCCccccccc
Q 010517          456 SCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT  497 (508)
Q Consensus       456 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~  497 (508)
                      .|.||++..   ....+++|||.| |..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence            489999987   467788999999 99999999844567999985

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.38  E-value=2.1e-07  Score=62.08  Aligned_cols=38  Identities=37%  Similarity=0.909  Sum_probs=34.2

Q ss_pred             cccccccCCceE-EeCCCCchhhHHhHHHHhc--cCCccccc
Q 010517          457 CVICWEAPVEGA-CVPCGHMAGCMSCLSEIKA--KKGDCPVC  495 (508)
Q Consensus       457 C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~--~~~~CP~C  495 (508)
                      |.||++...+.+ +++|||.| |..|+.++..  ....||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence            899999999999 88999999 9999999888  34579988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.37  E-value=2.6e-07  Score=62.76  Aligned_cols=43  Identities=44%  Similarity=0.990  Sum_probs=35.4

Q ss_pred             ccccccccCCceEEe-CCCCchhhHHhHHHHhcc-CCccccccccc
Q 010517          456 SCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKI  499 (508)
Q Consensus       456 ~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i  499 (508)
                      .|.||++.....+.+ +|||.| |..|+..+... +..||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998555555 599999 99999998876 66899999764

>smart00504 Ubox Modified RING finger domain

Probab=98.30  E-value=5e-07  Score=66.60  Aligned_cols=45  Identities=18%  Similarity=0.249  Sum_probs=41.6

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      ..|+||.+...+++..+|||.| |..|+..+...+..||+|+.++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCC
Confidence            4799999999999999999999 99999999877778999999984

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.29  E-value=8.1e-07  Score=96.50  Aligned_cols=100  Identities=22%  Similarity=0.125  Sum_probs=70.0

Q ss_pred             HcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccc
Q 010517           72 ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE  151 (508)
Q Consensus        72 ~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~  151 (508)
                      .+++++|....-..|.|+||.|+..+..-++++|++.|+++|..|..|+||||.+...|+...+.+|+++|++.+  ..+
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~--a~~  719 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN--AFD  719 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc--ccC
Confidence            444555443223456777777777777777777777777777777777777777777777777777777777777  777


Q ss_pred             cCCCCHHHHHHhhcCCHHHHHHh
Q 010517          152 FYGPSFLEALAPQLMSRKIWVVV  174 (508)
Q Consensus       152 ~~g~tpL~~~A~~~~~~~i~~~L  174 (508)
                      .+|.++|+ +|....+.+++-+|
T Consensus       720 ~~~~~~l~-~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  720 PDGKLPLD-IAMEAANADIVLLL  741 (785)
T ss_pred             ccCcchhh-HHhhhccccHHHHH
Confidence            77777777 66555555555444

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=3.5e-07  Score=83.84  Aligned_cols=45  Identities=44%  Similarity=1.014  Sum_probs=39.3

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhc-cCC-cccccccccc
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKG-DCPVCRTKIN  500 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~-~CP~Cr~~i~  500 (508)
                      ..|.||++.+..++..||||.| |..|+..++. ++. .||+||+.+.
T Consensus       216 ~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         216 YKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             cceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhcc
Confidence            6999999999999999999999 9999999444 444 4999999874

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.26  E-value=5.3e-07  Score=89.88  Aligned_cols=49  Identities=24%  Similarity=0.588  Sum_probs=43.5

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      .....|.||++.+.+++.++|||.| |..|+..+......||+||..+..
T Consensus        24 e~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        24 DTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             ccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence            3457999999999999999999999 999999988776789999998753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00184 RING Ring finger

Probab=98.25  E-value=9.1e-07  Score=57.87  Aligned_cols=38  Identities=37%  Similarity=0.988  Sum_probs=33.9

Q ss_pred             cccccccCCceEEeCCCCchhhHHhHHHHhc-cCCccccc
Q 010517          457 CVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVC  495 (508)
Q Consensus       457 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~C  495 (508)
                      |.||++.....+.++|||.| |..|...+.. .+..||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence            78999999999999999999 9999999876 45679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.25  E-value=4.3e-06  Score=73.04  Aligned_cols=70  Identities=29%  Similarity=0.207  Sum_probs=58.8

Q ss_pred             CCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcc
Q 010517           74 GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYF  145 (508)
Q Consensus        74 ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~  145 (508)
                      +.++|.+  |..||||||.|+..|..+.+.+|+.+| +.+...|..|.+++.+|-+.|+.++++.|.+.-.+-
T Consensus         2 e~~in~r--D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINAR--DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccch--hhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4577877  888889999888888888888888888 888888888888888888888888888888775443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.24  E-value=1.1e-06  Score=94.99  Aligned_cols=126  Identities=24%  Similarity=0.167  Sum_probs=84.9

Q ss_pred             cccCCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHH-HcCCCCcccCCCCCCCcH
Q 010517           12 QQRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRGGTP   89 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll-~~ga~~n~~~~d~~g~tp   89 (508)
                      .....|.+.||+++..++.-+++.+++- |......|.+|+..+|+++ . ++.+.+-+|+ -.|..++++  |..||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~-lg~ewA~ll~~~~~~ai~i~--D~~G~tp  644 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-A-LGYEWAFLPISADGVAIDIR--DRNGWTP  644 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-h-cCCceeEEEEeecccccccc--cCCCCcc
Confidence            4455677777777777777777777774 5555666777777777744 3 5566655554 346777777  7777777


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCc------cccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANA------LVRNDDCHTALGVARIKGHINVVRAIESH  141 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~------~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~  141 (508)
                      ||+|+.+|+..++..|++.|++.      ......|.|+-.+|..+|+..+..+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            77777777777777777766543      23334577777777777777766666544

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.20  E-value=7.5e-07  Score=59.27  Aligned_cols=30  Identities=40%  Similarity=0.934  Sum_probs=21.2

Q ss_pred             cccccccCCc----eEEeCCCCchhhHHhHHHHhcc
Q 010517          457 CVICWEAPVE----GACVPCGHMAGCMSCLSEIKAK  488 (508)
Q Consensus       457 C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~  488 (508)
                      |+||.| +.+    ++.++|||.| |..|+.+|...
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l~~~   34 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKLSKK   34 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EE-EHHHHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHHHhc
Confidence            899999 777    8899999999 99999999874

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.20  E-value=1.5e-06  Score=94.43  Aligned_cols=97  Identities=30%  Similarity=0.403  Sum_probs=76.2

Q ss_pred             cCCCCCccC--CCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC
Q 010517           39 QGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN  116 (508)
Q Consensus        39 ~g~~~~~~d--~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d  116 (508)
                      +++++|..+  ..|.|+||.|+.. +...++++|+..|+++|.+  |..|+||||.+...|+...+.+|++.|++.+..+
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~-~~~~~~e~ll~~ga~vn~~--d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~  719 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGT-GDSGAVELLLQNGADVNAL--DSKGRTPLHHATASGHTSIACLLLKRGADPNAFD  719 (785)
T ss_pred             chhhhccchhhhcccchhhhhhcc-chHHHHHHHHhcCCcchhh--hccCCCcchhhhhhcccchhhhhccccccccccC
Confidence            344444432  3578888888886 8888888888888888888  7888888888888888888888888888888888


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHH
Q 010517          117 DDCHTALGVARIKGHINVVRAI  138 (508)
Q Consensus       117 ~~g~TpLh~A~~~g~~~~v~~L  138 (508)
                      .+|.++|++|....+.+++-+|
T Consensus       720 ~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  720 PDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             ccCcchhhHHhhhccccHHHHH
Confidence            8888888888776666655544

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=9e-07  Score=88.60  Aligned_cols=52  Identities=29%  Similarity=0.768  Sum_probs=43.8

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccC-----Cccccccccccc--eeEee
Q 010517          454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-----GDCPVCRTKINQ--VIRLY  506 (508)
Q Consensus       454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----~~CP~Cr~~i~~--~i~i~  506 (508)
                      +..|+||++.+..++.+.|||.| |..|+.+.+...     +.||+||..|.-  ...+|
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~  244 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF  244 (513)
T ss_pred             CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence            47999999999999999999999 999999987653     479999999874  44443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.13  E-value=8.9e-06  Score=86.25  Aligned_cols=126  Identities=22%  Similarity=0.177  Sum_probs=101.7

Q ss_pred             CCCChHHHHHHHhCCCHHHHHHHHHcC----CCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHH
Q 010517           48 KEGKTPLIVACMDSGLINVAKTLIELG----ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL  123 (508)
Q Consensus        48 ~~G~TpLh~Aa~~~g~~~~v~~Ll~~g----a~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL  123 (508)
                      ..+.--...|+.+ |+...|+..++..    .++|.+  |.-|+++|++|+.+.+.+++++|++++..+       .-+|
T Consensus        23 ~~~e~~fL~a~E~-gd~~~V~k~l~~~~~~~lninc~--d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdAL   92 (822)
T KOG3609|consen   23 NEGEKGFLLAHEN-GDVPLVAKALEYKAVSKLNINCR--DPLGRLALHIAIDNENLELQELLLDTSSEE-------GDAL   92 (822)
T ss_pred             chhhHHHHHHHHc-CChHHHHHHHHhccccccchhcc--ChHhhhceecccccccHHHHHHHhcCcccc-------chHH
Confidence            3445556788888 9999888888763    457777  789999999999999999999999987554       3489


Q ss_pred             HHHHHhCCHHHHHHHHHcCCcccc--------cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCC
Q 010517          124 GVARIKGHINVVRAIESHICYFCG--------WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSK  184 (508)
Q Consensus       124 h~A~~~g~~~~v~~Ll~~ga~~~~--------~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~  184 (508)
                      .+|+..|.+++|++|+.+.....+        -..-..+-|||+ +|+..++.||+++|+.+|+.+...
T Consensus        93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli-LAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM-LAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH-HHHHhcchHHHHHHHHcCCCCCCC
Confidence            999999999999999987543310        022345789999 999999999999999999987543

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.08  E-value=3e-06  Score=64.09  Aligned_cols=41  Identities=34%  Similarity=0.853  Sum_probs=33.8

Q ss_pred             cccccccccC-------------CceEEeCCCCchhhHHhHHHHhccCCcccccc
Q 010517          455 SSCVICWEAP-------------VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCR  496 (508)
Q Consensus       455 ~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr  496 (508)
                      ..|.||++..             ..++..+|||.| ...|+.+|...+..||+||
T Consensus        20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred             CcccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence            4599999876             444566999999 9999999998888999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.07  E-value=9e-06  Score=71.08  Aligned_cols=65  Identities=18%  Similarity=0.130  Sum_probs=39.7

Q ss_pred             CcccccCCchHHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcC
Q 010517            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQG-ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG   74 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~g   74 (508)
                      ++|.+|..|+|+||.|+..|..+.|.+|+.+| +.+...|..|.+++.+|-+. |+.++++.|.+.-
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~-g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKG-GAQAFVHSLFEND   69 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhc-ChHHHHHHHHHHh
Confidence            45556666666666666666666666666666 55666666666666666554 6666666665553

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.02  E-value=2e-06  Score=81.06  Aligned_cols=46  Identities=28%  Similarity=0.684  Sum_probs=42.9

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      ..|.||.|.+..+++.||+|.| |..|+......++.||.|+.++.+
T Consensus        24 LRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   24 LRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence            6999999999999999999999 999999988888899999998863

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=1.2e-06  Score=92.05  Aligned_cols=51  Identities=24%  Similarity=0.621  Sum_probs=45.1

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCcccccccccc--ceeEee
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN--QVIRLY  506 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~--~~i~i~  506 (508)
                      ..|++|.+++.++|...|||.| |..|+...-.. ..+||.|.++|.  ++.+||
T Consensus       644 LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~  697 (698)
T KOG0978|consen  644 LKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH  697 (698)
T ss_pred             eeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence            5899999999999999999999 99999886554 468999999995  688887

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.99  E-value=2.8e-06  Score=78.35  Aligned_cols=46  Identities=28%  Similarity=0.547  Sum_probs=42.5

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      ..|-||-+++..++..+|||.| |..|+.+.....+.||+||.+...
T Consensus        26 lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          26 LRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             HHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccHHh
Confidence            5899999999999999999999 999999988888899999998753

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.97  E-value=1.9e-05  Score=75.96  Aligned_cols=76  Identities=30%  Similarity=0.315  Sum_probs=54.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC
Q 010517           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (508)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g   97 (508)
                      .--|..|++.|+++.|+.|++.|.++|.+|....+||.+|+.. ||.++|++||+.|+--..-  ..+|.- -||++.+.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLc-GHe~vvklLLenGAiC~rd--tf~G~R-C~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLC-GHEDVVKLLLENGAICSRD--TFDGDR-CHYGALND  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHc-CcHHHHHHHHHcCCccccc--ccCcch-hhhhhhhH
Confidence            4457788888888888888888888888888888888888886 8888888888888643321  234433 35655543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.96  E-value=8.8e-06  Score=88.09  Aligned_cols=130  Identities=15%  Similarity=0.019  Sum_probs=101.0

Q ss_pred             CccCCCCChHHHHHHHhCCCHHHHHHHHHc-CCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcH
Q 010517           44 EWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTA  122 (508)
Q Consensus        44 ~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp  122 (508)
                      ......|+|.||+++.. +..-+++.+++. |...+..  |.+|.--+|+++..|..-.+.+..-.|..++.+|..|+||
T Consensus       568 ~~~~~r~~lllhL~a~~-lyawLie~~~e~~~~~~~el--d~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAEL-LYAWLIEKVIEWAGSGDLEL--DRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             ccCCCcchHHHHHHHHH-hHHHHHHHHhcccccCchhh--cccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcc
Confidence            34556789999999988 999999999987 6666666  6677777888554444434444445678899999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCcccc----cccccCCCCHHHHHHhhcCCHHHHHHhhhC
Q 010517          123 LGVARIKGHINVVRAIESHICYFCG----WLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (508)
Q Consensus       123 Lh~A~~~g~~~~v~~Ll~~ga~~~~----~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~  177 (508)
                      ||+|+.+|+..++..|++.|++...    ......|.|+-. +|..+|+..+..+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~-la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAAD-LARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhh-hhhcccccchHHHHhhh
Confidence            9999999999999999988876431    133456889999 89999999999888765

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.94  E-value=2.2e-05  Score=75.51  Aligned_cols=85  Identities=28%  Similarity=0.314  Sum_probs=67.4

Q ss_pred             ChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC
Q 010517           51 KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (508)
Q Consensus        51 ~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g  130 (508)
                      .--|-+||+. |.++.|+.|++.|.++|.+  |....+||.+|+..||.++|++||++||--..-.-+|.-. ||++.+.
T Consensus        37 f~elceacR~-GD~d~v~~LVetgvnVN~v--D~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCEACRA-GDVDRVRYLVETGVNVNAV--DRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND  112 (516)
T ss_pred             hHHHHHHhhc-ccHHHHHHHHHhCCCcchh--hcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH
Confidence            4458899998 9999999999999999999  8899999999999999999999999998665444455554 5555543


Q ss_pred             CHHHHHHHHHc
Q 010517          131 HINVVRAIESH  141 (508)
Q Consensus       131 ~~~~v~~Ll~~  141 (508)
                        .|-++|++.
T Consensus       113 --~IR~mllsy  121 (516)
T KOG0511|consen  113 --RIRRMLLSY  121 (516)
T ss_pred             --HHHHHHHHH
Confidence              334455543

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=3.8e-06  Score=76.86  Aligned_cols=48  Identities=27%  Similarity=0.665  Sum_probs=43.1

Q ss_pred             ccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeee
Q 010517          456 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  507 (508)
Q Consensus       456 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~  507 (508)
                      .|..|.++...++++||.|.+.|..|...+..    ||+|+.++...+.+|.
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~----CPiC~~~~~s~~~v~~  207 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICDESLRI----CPICRSPKTSSVEVNF  207 (207)
T ss_pred             cceecCcCCceEEeecccceEecccccccCcc----CCCCcChhhceeeccC
Confidence            49999999999999999999999999876544    9999999999888874

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=7.1e-06  Score=76.63  Aligned_cols=48  Identities=29%  Similarity=0.643  Sum_probs=41.6

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCcccccccccccee
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVI  503 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~i  503 (508)
                      .+|.||+....-++.++|+|.| |+.|++..... ++.|++||.+|.+.|
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkF-CyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKF-CYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CcceeeeccCCcCccccccchh-hhhhhcchhhcCCCCCceecCCCCcch
Confidence            5899999999888999999999 99999885544 456999999998754

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=9.4e-06  Score=77.58  Aligned_cols=46  Identities=30%  Similarity=0.871  Sum_probs=38.9

Q ss_pred             CccccccccccC-------------CceEEeCCCCchhhHHhHHHHhccCCccccccccc
Q 010517          453 SSSSCVICWEAP-------------VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI  499 (508)
Q Consensus       453 ~~~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i  499 (508)
                      ++..|.||||..             ..+--+||||.+ ..+|.+.|......||+||.++
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence            347999999982             233567999999 9999999998888999999995

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=1.3e-05  Score=74.64  Aligned_cols=45  Identities=31%  Similarity=0.713  Sum_probs=38.3

Q ss_pred             cccccccccCC---ceEEeCCCCchhhHHhHHHHhc-cCCcccccccccc
Q 010517          455 SSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN  500 (508)
Q Consensus       455 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~  500 (508)
                      .+|.|||+.+.   ..+.+||.|.| ...|+.+|-. -+..||+||.+|.
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence            69999999752   36678999999 9999999987 4678999999874

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.75  E-value=2.7e-05  Score=59.01  Aligned_cols=48  Identities=21%  Similarity=0.282  Sum_probs=39.1

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  501 (508)
                      ++..|+||.+...++|.+||||.| +..|+.+|... ...||+|+.++..
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            447999999999999999999999 99999999887 6789999999874

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=3.1e-05  Score=75.31  Aligned_cols=46  Identities=28%  Similarity=0.689  Sum_probs=38.4

Q ss_pred             cccccccccCC---ceEEeCCCCchhhHHhHHHHhccCC-ccccccccccc
Q 010517          455 SSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ  501 (508)
Q Consensus       455 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~  501 (508)
                      ..|.||+|...   ....+||+|.| ...|+..|..+.+ .||+|+..|.+
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCC
Confidence            49999999864   34567999999 9999999988764 59999997754

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.54  E-value=7.6e-05  Score=70.75  Aligned_cols=58  Identities=33%  Similarity=0.731  Sum_probs=46.7

Q ss_pred             CCCCCCCCCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc--CCccccccccccce
Q 010517          444 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKINQV  502 (508)
Q Consensus       444 ~~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~~~  502 (508)
                      .++.++.+++...|.||-+...-...+||+|.. |..|+-+++..  .+.||+||..-..+
T Consensus        51 tsSaddtDEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V  110 (493)
T COG5236          51 TSSADDTDEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAV  110 (493)
T ss_pred             cccccccccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceE
Confidence            334445566678999999998888889999999 99999998764  56899999876554

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=5.5e-05  Score=71.92  Aligned_cols=51  Identities=27%  Similarity=0.785  Sum_probs=44.2

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccccee
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  503 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i  503 (508)
                      .++..|+||+..+.+.+|.||+|.- |+.|+.+..-..+.|=.|.+.+...+
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~~~  470 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVIDVI  470 (489)
T ss_pred             cccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeeehh
Confidence            4568999999999999999999999 99999987665678999998887544

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.44  E-value=6e-05  Score=72.79  Aligned_cols=47  Identities=36%  Similarity=0.830  Sum_probs=42.2

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc--CCccccccccccce
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKINQV  502 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~~~  502 (508)
                      ..|-||-|..+++-..||||.. |..|...|...  ...||.||-.|...
T Consensus       370 eLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  370 ELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccc
Confidence            5899999999999999999999 99999999865  35799999999753

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=5e-05  Score=75.67  Aligned_cols=45  Identities=38%  Similarity=0.775  Sum_probs=39.2

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT  497 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~  497 (508)
                      .++..|+||++.+..+..+||||.| |..|+..++...-.||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence            4557999999999999999999999 99999998863347999994

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.35  E-value=4.2e-05  Score=54.57  Aligned_cols=43  Identities=35%  Similarity=0.859  Sum_probs=23.1

Q ss_pred             cccccccccCCceEE-eCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          455 SSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      ..|.+|.+....+|. ..|.|.| |..|+.+--  ...||+|+.|..
T Consensus         8 LrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~--~~~CPvC~~Paw   51 (65)
T PF14835_consen    8 LRCSICFDILKEPVCLGGCEHIF-CSSCIRDCI--GSECPVCHTPAW   51 (65)
T ss_dssp             TS-SSS-S--SS-B---SSS--B--TTTGGGGT--TTB-SSS--B-S
T ss_pred             cCCcHHHHHhcCCceeccCccHH-HHHHhHHhc--CCCCCCcCChHH
Confidence            589999999999975 5999999 999986632  235999999874

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.30  E-value=0.00024  Score=54.23  Aligned_cols=34  Identities=29%  Similarity=0.620  Sum_probs=27.7

Q ss_pred             ceEEeCCCCchhhHHhHHHHhcc---CCcccccccccc
Q 010517          466 EGACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKIN  500 (508)
Q Consensus       466 ~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~  500 (508)
                      ..+.-.|+|.| ...|+.+|...   +..||+||++..
T Consensus        46 plv~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   46 PLVWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             ceeeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence            34555899999 99999998774   468999999764

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.00016  Score=72.45  Aligned_cols=49  Identities=31%  Similarity=0.807  Sum_probs=43.9

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      ..+..|.||+..+..++..||||.+ |..|+.+....+..||.||.++.+
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence            3457999999999999999999999 999999977777899999998875

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.17  E-value=0.00012  Score=50.60  Aligned_cols=45  Identities=31%  Similarity=0.847  Sum_probs=37.2

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      +..|..|.......+++||||.+ |..|......  ..||+|.++|+.
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rY--ngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERY--NGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEcccccccccccccccee-eccccChhhc--cCCCCCCCcccC
Confidence            36899999998888999999999 9999665443  359999999863

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=7.4e-05  Score=71.50  Aligned_cols=50  Identities=24%  Similarity=0.610  Sum_probs=39.3

Q ss_pred             CccccccccccCCceE-EeCCCCchhhHHhHHH-HhccCCcccccccccccee
Q 010517          453 SSSSCVICWEAPVEGA-CVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKINQVI  503 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~-~~~~~~~CP~Cr~~i~~~i  503 (508)
                      .+..|+||++...... ..-|.|+| |.+|+.. ++..+..||.||+......
T Consensus        42 ~~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   42 IQVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             hhhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhccccc
Confidence            4479999999976544 34899999 9999876 4455788999999887543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.00022  Score=75.98  Aligned_cols=47  Identities=36%  Similarity=0.767  Sum_probs=41.5

Q ss_pred             CccccccccccCCc-----eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          453 SSSSCVICWEAPVE-----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      ....|.||+|....     +-.+||+|.| |..|...|-++...||+||..+.
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhhh
Confidence            34799999999877     6788999999 99999999998889999999543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.00034  Score=68.63  Aligned_cols=51  Identities=31%  Similarity=0.683  Sum_probs=41.7

Q ss_pred             CccccccccccCCceE-----E---eCCCCchhhHHhHHHHh--cc-----CCccccccccccceeE
Q 010517          453 SSSSCVICWEAPVEGA-----C---VPCGHMAGCMSCLSEIK--AK-----KGDCPVCRTKINQVIR  504 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~-----~---~pCgH~~~C~~C~~~~~--~~-----~~~CP~Cr~~i~~~i~  504 (508)
                      .+.+|.||||.....+     +   .+|.|.| |..|+..|+  ++     .+.||.||.+...++.
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p  225 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP  225 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence            4479999999977666     5   6899999 999999998  33     3679999998876553

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.80  E-value=0.00063  Score=45.98  Aligned_cols=42  Identities=31%  Similarity=0.755  Sum_probs=21.2

Q ss_pred             cccccccC--CceEEe--CCCCchhhHHhHHHHhc-cCCccccccccc
Q 010517          457 CVICWEAP--VEGACV--PCGHMAGCMSCLSEIKA-KKGDCPVCRTKI  499 (508)
Q Consensus       457 C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i  499 (508)
                      |++|.+..  .+..|.  +||+.+ |..|..++.. ..+.||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence            56777664  333445  567888 9999999986 468999999875

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.74  E-value=0.0011  Score=62.94  Aligned_cols=49  Identities=31%  Similarity=0.825  Sum_probs=37.8

Q ss_pred             CCccccccccccC--CceEEe--CCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517          452 GSSSSCVICWEAP--VEGACV--PCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  501 (508)
                      +++..|+.|+|..  .+.-|.  |||..+ |..|...++.. +++||-||....+
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhccc
Confidence            3446799999973  344455  677777 99999999875 7899999998763

>smart00248 ANK ankyrin repeats

Probab=96.65  E-value=0.0029  Score=37.15  Aligned_cols=27  Identities=44%  Similarity=0.758  Sum_probs=13.6

Q ss_pred             CChHHHHHHHhCCCHHHHHHHHHcCCCC
Q 010517           50 GKTPLIVACMDSGLINVAKTLIELGANI   77 (508)
Q Consensus        50 G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~   77 (508)
                      |.||||+|+.. ++.+++++|++++.++
T Consensus         2 ~~~~l~~~~~~-~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAEN-GNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHc-CCHHHHHHHHHcCCCC
Confidence            44555555544 5555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.64  E-value=0.0035  Score=62.93  Aligned_cols=64  Identities=20%  Similarity=0.137  Sum_probs=45.5

Q ss_pred             HHHHHHHHHcCCCCccc----CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHH
Q 010517           64 INVAKTLIELGANINAY----RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR  127 (508)
Q Consensus        64 ~~~v~~Ll~~ga~~n~~----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~  127 (508)
                      ...+++|.+++.+.|..    ..+..--|+||||+..|..++|.+||+.|+|+...|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            45677777777666542    11334567788888888888888888888888888888888877766

>smart00248 ANK ankyrin repeats

Probab=96.62  E-value=0.0035  Score=36.78  Aligned_cols=26  Identities=54%  Similarity=0.736  Sum_probs=12.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCC
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSCGAN  111 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~ga~  111 (508)
                      |.||||+|+..++.+++++|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            34455555555555555555544443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.60  E-value=0.0033  Score=63.09  Aligned_cols=64  Identities=28%  Similarity=0.303  Sum_probs=54.5

Q ss_pred             HHHHHHHHHcCCCCCc------cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHc
Q 010517           30 VDAIRALRSQGASLEW------MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (508)
Q Consensus        30 ~~~v~~Ll~~g~~~~~------~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~   96 (508)
                      ...|++|.+++.+.|.      .+..--|+||||+.. |..++|.+||+.|+|+-.+  |..|+||.+++...
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~q-g~~k~v~~~Leeg~Dp~~k--d~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQ-GARKCVKYFLEEGCDPSTK--DGAGRTPYSLSANK  473 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhc-chHHHHHHHHHhcCCchhc--ccCCCCcccccccH
Confidence            5678889998877643      244567999999997 9999999999999999998  89999999999833

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=96.48  E-value=0.0022  Score=61.68  Aligned_cols=30  Identities=37%  Similarity=0.972  Sum_probs=25.8

Q ss_pred             CCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517          471 PCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  501 (508)
Q Consensus       471 pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  501 (508)
                      +|||.| |..|+.+++.. ...||.|+.++..
T Consensus        25 ~CGH~~-C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570        25 VCGHTL-CESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCcc-cHHHHHHHhcCCCCCCCCCCCccch
Confidence            899999 99999998754 4579999998864

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.0029  Score=58.75  Aligned_cols=45  Identities=27%  Similarity=0.817  Sum_probs=36.5

Q ss_pred             cccccccccCCceEEe-CCCCchhhHHhHHHHhc--cCCcccccccccc
Q 010517          455 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA--KKGDCPVCRTKIN  500 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~  500 (508)
                      .+|++|-+.+..+... +|||.+ |+.|+..-..  ..=.||.|..++.
T Consensus       240 ~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  240 TECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCc
Confidence            6999999999888766 699999 9999876443  2336999988876

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.0015  Score=61.34  Aligned_cols=48  Identities=25%  Similarity=0.527  Sum_probs=41.7

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccccee
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  503 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i  503 (508)
                      ..|-||...+.++|...|+|.| |..|+..--+....|.+|.+.+...+
T Consensus       242 f~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~~  289 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGSF  289 (313)
T ss_pred             ccccccccccccchhhcCCcee-ehhhhccccccCCcceeccccccccc
Confidence            4799999999999999999999 99998876666678999999886544

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.19  E-value=0.0021  Score=56.39  Aligned_cols=47  Identities=26%  Similarity=0.467  Sum_probs=40.3

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccce
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  502 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  502 (508)
                      ..|.||-.-...+|+..|||.| |..|+.+--+....|-+|.+.....
T Consensus       197 F~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G~  243 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYGR  243 (259)
T ss_pred             eeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhccc
Confidence            5899999999999999999999 9999887666667899998765543

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.14  E-value=0.0035  Score=65.98  Aligned_cols=52  Identities=21%  Similarity=0.391  Sum_probs=42.3

Q ss_pred             CccccccccccCCceE---EeCCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010517          453 SSSSCVICWEAPVEGA---CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  505 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i  505 (508)
                      ....|++|+....+-.   -.+|+|.| |..|+..|.+-...||+||..+.+++.+
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V~  176 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKVL  176 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeeee
Confidence            4468999997754433   23999999 9999999998777899999999887765

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=95.97  E-value=0.0072  Score=51.63  Aligned_cols=52  Identities=29%  Similarity=0.691  Sum_probs=37.9

Q ss_pred             ccccccccccCCceEEeCCC-Cchh-----------hHHhHHHHhcc-------------------------------CC
Q 010517          454 SSSCVICWEAPVEGACVPCG-HMAG-----------CMSCLSEIKAK-------------------------------KG  490 (508)
Q Consensus       454 ~~~C~iC~~~~~~~~~~pCg-H~~~-----------C~~C~~~~~~~-------------------------------~~  490 (508)
                      +..|+||||.+=+.|++-|. |.-.           -.-|..+.++.                               +-
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L   81 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL   81 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence            36899999999999999775 3332           34577776541                               12


Q ss_pred             ccccccccccceeEe
Q 010517          491 DCPVCRTKINQVIRL  505 (508)
Q Consensus       491 ~CP~Cr~~i~~~i~i  505 (508)
                      .||+||..|...+.+
T Consensus        82 ~CPLCRG~V~GWtvv   96 (162)
T PF07800_consen   82 ACPLCRGEVKGWTVV   96 (162)
T ss_pred             cCccccCceeceEEc
Confidence            499999999887765

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.91  E-value=0.0053  Score=60.93  Aligned_cols=41  Identities=32%  Similarity=0.650  Sum_probs=32.6

Q ss_pred             cccccccccCC-ce---EEeCCCCchhhHHhHHHHhccCCcccccccc
Q 010517          455 SSCVICWEAPV-EG---ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK  498 (508)
Q Consensus       455 ~~C~iC~~~~~-~~---~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~  498 (508)
                      ..|+||+|+.- ++   +-..|.|.| -..|..+|+..  .||+||--
T Consensus       176 PTCpVCLERMD~s~~gi~t~~c~Hsf-h~~cl~~w~~~--scpvcR~~  220 (493)
T KOG0804|consen  176 PTCPVCLERMDSSTTGILTILCNHSF-HCSCLMKWWDS--SCPVCRYC  220 (493)
T ss_pred             CCcchhHhhcCccccceeeeeccccc-chHHHhhcccC--cChhhhhh
Confidence            58999999842 22   455899999 88999999874  59999864

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.0035  Score=57.84  Aligned_cols=46  Identities=24%  Similarity=0.559  Sum_probs=36.8

Q ss_pred             ccccccccccCC----------ceEEeCCCCchhhHHhHHHHhcc--CCcccccccccc
Q 010517          454 SSSCVICWEAPV----------EGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN  500 (508)
Q Consensus       454 ~~~C~iC~~~~~----------~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~  500 (508)
                      ++.|.||-.+.-          +..-+.|+|.| .+.|++-|...  +..||.|.+.|+
T Consensus       224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             cchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhh
Confidence            369999987643          23356999999 99999999875  457999998886

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.0038  Score=62.38  Aligned_cols=48  Identities=31%  Similarity=0.628  Sum_probs=37.4

Q ss_pred             CCcccccccccc-----------------CCceEEeCCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010517          452 GSSSSCVICWEA-----------------PVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  500 (508)
Q Consensus       452 ~~~~~C~iC~~~-----------------~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~  500 (508)
                      .....|+|||..                 .++..+.||.|.| ...|..+|-.. +-.||+||.++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCC
Confidence            345789999963                 1235567999999 99999998774 447999999874

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.58  E-value=0.012  Score=56.40  Aligned_cols=51  Identities=27%  Similarity=0.462  Sum_probs=40.5

Q ss_pred             CccccccccccC----CceEEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEe
Q 010517          453 SSSSCVICWEAP----VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRL  505 (508)
Q Consensus       453 ~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i  505 (508)
                      ....|+|....+    .-+++.||||+| ++.++..+. ....||+|-.++.  ++|.|
T Consensus       112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k-~~~~Cp~c~~~f~~~DiI~L  168 (260)
T PF04641_consen  112 GRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELK-KSKKCPVCGKPFTEEDIIPL  168 (260)
T ss_pred             ceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhc-ccccccccCCccccCCEEEe
Confidence            346999998765    455666999999 999999997 3457999999986  46655

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.17  E-value=0.023  Score=39.11  Aligned_cols=40  Identities=23%  Similarity=0.640  Sum_probs=31.4

Q ss_pred             ccccccc--cCCceEEeCCC-----CchhhHHhHHHHhccC--Ccccccc
Q 010517          456 SCVICWE--APVEGACVPCG-----HMAGCMSCLSEIKAKK--GDCPVCR  496 (508)
Q Consensus       456 ~C~iC~~--~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CP~Cr  496 (508)
                      .|-||++  ...+..+.||.     |.+ ...|+.+|...+  ..||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence            4889997  56677788997     556 999999998653  4799994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.85  E-value=0.011  Score=59.53  Aligned_cols=49  Identities=22%  Similarity=0.601  Sum_probs=40.3

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-----CCcccccccccc
Q 010517          451 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-----KGDCPVCRTKIN  500 (508)
Q Consensus       451 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-----~~~CP~Cr~~i~  500 (508)
                      ..++.+|.+|.|...+.+...|.|.| |..|++.....     +..||.|..+++
T Consensus       533 nk~~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             ccCceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCcccccccc
Confidence            34557999999999999999999999 99999775442     357999987654

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=94.74  E-value=0.011  Score=60.09  Aligned_cols=49  Identities=33%  Similarity=0.737  Sum_probs=42.9

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccce
Q 010517          453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  502 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  502 (508)
                      +...|++|+....+++.. .|||.| |..|...+......||.||..+...
T Consensus        20 ~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~   69 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQA   69 (391)
T ss_pred             ccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchh
Confidence            347999999999999994 999999 9999999888778899998887643

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=0.024  Score=51.75  Aligned_cols=52  Identities=19%  Similarity=0.382  Sum_probs=42.1

Q ss_pred             CccccccccccCCc----eEEeCCCCchhhHHhHHHHhccCCccccccccccc--eeEe
Q 010517          453 SSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ--VIRL  505 (508)
Q Consensus       453 ~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~--~i~i  505 (508)
                      ....|+||.+...+    +++.||||+| |++|++++-+....||+|-.+..+  +|.|
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkdrdiI~L  277 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKDRDIIGL  277 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcccceEee
Confidence            44799999998543    4466999999 999999998877789999999874  4443

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=94.13  E-value=0.023  Score=61.46  Aligned_cols=44  Identities=30%  Similarity=0.720  Sum_probs=37.6

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc--CCcccccccccc
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN  500 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~  500 (508)
                      ..|.+|++ ...++..+|+|.+ |.+|.......  ...||+||..+.
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHH
Confidence            68999999 8888888999999 99998886654  246999998775

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.00  E-value=0.32  Score=44.45  Aligned_cols=114  Identities=12%  Similarity=0.042  Sum_probs=55.3

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCC--CCCCCcHHHHHHH--c
Q 010517           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--GGRGGTPLHHAAK--R   96 (508)
Q Consensus        21 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~--d~~g~tpLh~A~~--~   96 (508)
                      |--|+..-+.+.+..++...       ++-.++|-+|..+ +..+++-+|+..- +...+|.  -..+..-+-|+..  .
T Consensus       157 ledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~-~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~  227 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGN-AKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHS  227 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcc-cHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcC
Confidence            44455555555544443211       1234666666655 6666776666541 1111100  0112222333332  2


Q ss_pred             CCHHHHHHHHHCC-CCccc---cCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q 010517           97 GLEPTVRLLLSCG-ANALV---RNDDCHTALGVARIKGHINVVRAIESHIC  143 (508)
Q Consensus        97 g~~~~v~~Ll~~g-a~~~~---~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  143 (508)
                      .+..+++++|+.| +++|.   .-+.|.|.|.-|.+.++.+++.+||++|+
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            3445556666665 44442   23456666666666666666666666665

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=93.72  E-value=0.036  Score=53.80  Aligned_cols=44  Identities=32%  Similarity=0.865  Sum_probs=36.7

Q ss_pred             CccccccccccCCceEEeCC--CCchhhHHhHHHHhccCCccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPC--GHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      +..+|+||.+....+++ .|  ||.. |..|..++..   +||.||.+|..
T Consensus        47 ~lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~---~CP~Cr~~~g~   92 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSN---KCPTCRLPIGN   92 (299)
T ss_pred             hhccCchhhccCcccce-ecCCCcEe-hhhhhhhhcc---cCCcccccccc
Confidence            44799999999988877 46  7999 9999876655   69999999974

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.54  E-value=0.42  Score=43.67  Aligned_cols=94  Identities=19%  Similarity=0.169  Sum_probs=69.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCccC----CCCChHHHHHHHh-CCCHHHHHHHHHcC-CCCccc-CCCCCCCcH
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMD----KEGKTPLIVACMD-SGLINVAKTLIELG-ANINAY-RPGGRGGTP   89 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d----~~G~TpLh~Aa~~-~g~~~~v~~Ll~~g-a~~n~~-~~d~~g~tp   89 (508)
                      -.++|.++..++..+++.+||.+ .+....|    ..+.--+-|+... +.+..++++.++.| +++|.. .+-+.|.|-
T Consensus       179 A~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            46889999999999999999984 2222222    1233345555433 45788999999998 566643 124679999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC
Q 010517           90 LHHAAKRGLEPTVRLLLSCGAN  111 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~  111 (508)
                      |.-|.++++.+++.+||++||-
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.46  E-value=0.67  Score=41.11  Aligned_cols=139  Identities=17%  Similarity=0.090  Sum_probs=95.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC
Q 010517           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (508)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g   97 (508)
                      .-.|..|++.+.+.+++..-+...+-   -...++..-.||+. .+.|+|+++   |-++...    +-.+-+-.|....
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~-qkydiV~WI---~qnL~i~----~~~~iFdIA~~~k  115 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEE-QKYDIVKWI---GQNLHIY----NPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHH-ccccHHHHH---hhccCCC----Cchhhhhhhhhcc
Confidence            45678889999999998876643221   13457888899997 999999999   3334433    2235677888888


Q ss_pred             CHHHH----HHHHHCCCCccccCCC--CCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHH
Q 010517           98 LEPTV----RLLLSCGANALVRNDD--CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (508)
Q Consensus        98 ~~~~v----~~Ll~~ga~~~~~d~~--g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~  171 (508)
                      +.++.    .+++++...-+..|..  -.--|..|+.+|....+.-.+++|.+++        .+.|. .|+..++.+|+
T Consensus       116 DlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~--------~~vls-~Av~ynhRkIL  186 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD--------IIVLS-QAVKYNHRKIL  186 (192)
T ss_pred             chhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc--------HHHHH-HHHHhhHHHHH
Confidence            77652    2233332111011100  0124678999999999999999998876        27888 99999999999


Q ss_pred             HHhhh
Q 010517          172 VVVIP  176 (508)
Q Consensus       172 ~~Ll~  176 (508)
                      .+++.
T Consensus       187 ~yfi~  191 (192)
T PF03158_consen  187 DYFIR  191 (192)
T ss_pred             HHhhc
Confidence            98874

These proteins may be involved in promoting survival of infected macrophages [].

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.42  E-value=0.16  Score=47.56  Aligned_cols=33  Identities=33%  Similarity=0.727  Sum_probs=28.6

Q ss_pred             cccccccccCCceEEeCCC----CchhhHHhHHH-Hhcc
Q 010517          455 SSCVICWEAPVEGACVPCG----HMAGCMSCLSE-IKAK  488 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~-~~~~  488 (508)
                      ..|.+|.|+..|.-|+-|-    |.| |+.|... |+.+
T Consensus       269 LcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSResIK~Q  306 (352)
T KOG3579|consen  269 LCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRESIKQQ  306 (352)
T ss_pred             eeehhhhhhhccCceeecCCCcccce-ecccCHHHHHhh
Confidence            6999999999999999995    999 9999877 4443

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=93.36  E-value=0.055  Score=44.80  Aligned_cols=46  Identities=30%  Similarity=0.669  Sum_probs=39.1

Q ss_pred             cccccccccCCceEEe----CCCCchhhHHhHHHHhcc---CCccccccccccc
Q 010517          455 SSCVICWEAPVEGACV----PCGHMAGCMSCLSEIKAK---KGDCPVCRTKINQ  501 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~~  501 (508)
                      .+|.||.|...+.-|+    =||-.. |-.|...+|+.   -+.||+|+..+.+
T Consensus        81 YeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   81 YECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             eeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCcccccccc
Confidence            6999999998888877    499888 99998888875   3689999998864

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=93.32  E-value=0.095  Score=39.08  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             ceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          466 EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       466 ~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      .++---|.|.| ...|+.+|...+..||++|++..
T Consensus        48 ~v~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          48 PVVWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             eEEEEecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence            34455899999 99999999998899999998753

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=93.20  E-value=0.022  Score=42.58  Aligned_cols=46  Identities=33%  Similarity=0.806  Sum_probs=21.7

Q ss_pred             ccccccccccCC------ceEEe--CCCCchhhHHhHHHHhcc----C-------Ccccccccccc
Q 010517          454 SSSCVICWEAPV------EGACV--PCGHMAGCMSCLSEIKAK----K-------GDCPVCRTKIN  500 (508)
Q Consensus       454 ~~~C~iC~~~~~------~~~~~--pCgH~~~C~~C~~~~~~~----~-------~~CP~Cr~~i~  500 (508)
                      +.+|.||+...-      +.+.-  .|++.| ...|+..|-..    +       +.||.|+++|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            368999998632      23333  788888 89998888542    1       25999999985

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=92.78  E-value=0.089  Score=44.03  Aligned_cols=32  Identities=25%  Similarity=0.534  Sum_probs=27.0

Q ss_pred             cccccccccCCc---eEEeCCC------CchhhHHhHHHHhc
Q 010517          455 SSCVICWEAPVE---GACVPCG------HMAGCMSCLSEIKA  487 (508)
Q Consensus       455 ~~C~iC~~~~~~---~~~~pCg------H~~~C~~C~~~~~~  487 (508)
                      .+|.||+++.-+   +|.++||      |+| |.+|..+|.+
T Consensus        27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw~~   67 (134)
T PF05883_consen   27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRWRR   67 (134)
T ss_pred             eeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHHHh
Confidence            699999998654   7778998      777 9999999954

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=92.52  E-value=0.074  Score=50.90  Aligned_cols=54  Identities=22%  Similarity=0.544  Sum_probs=40.9

Q ss_pred             CccccccccccCCceE-EeCCCCchhhHHhHHHHhccCCccccccccc--cceeEeee
Q 010517          453 SSSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLYT  507 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i--~~~i~i~~  507 (508)
                      +...|+||+....+.. +.-.|-+| |+.|+-.-....+.||+-..|+  .+.+|+|.
T Consensus       299 ~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~~  355 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLFN  355 (357)
T ss_pred             ccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHhc
Confidence            4479999998866544 44668888 9999998777678899976665  46777763

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=92.48  E-value=0.037  Score=53.17  Aligned_cols=50  Identities=24%  Similarity=0.603  Sum_probs=41.6

Q ss_pred             cccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010517          455 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  505 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i  505 (508)
                      ..|.+|-.-+.+..-+ -|-|.| |..|+.+-......||.|...|-+...+
T Consensus        16 itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~pl   66 (331)
T KOG2660|consen   16 ITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHPL   66 (331)
T ss_pred             eehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCcccc
Confidence            6899999888766543 799999 9999988777788999999988877644

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.39  E-value=0.071  Score=52.65  Aligned_cols=31  Identities=35%  Similarity=0.829  Sum_probs=25.9

Q ss_pred             cccccccccCC---ceEEeCCCCchhhHHhHHHHh
Q 010517          455 SSCVICWEAPV---EGACVPCGHMAGCMSCLSEIK  486 (508)
Q Consensus       455 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~  486 (508)
                      ..|.||++...   ..+++||+|+| |..|....-
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY~  218 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDYF  218 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHH-HHHHHHHHH
Confidence            58999999864   46788999999 999987743

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.22  E-value=0.065  Score=58.01  Aligned_cols=47  Identities=28%  Similarity=0.750  Sum_probs=36.5

Q ss_pred             Ccccccccccc-------CCceEEeCCCCchhhHHhHHHHhcc--CCcccccccccc
Q 010517          453 SSSSCVICWEA-------PVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~-------~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~  500 (508)
                      ...+|.||+..       .....+-.|.|.| ...|.-+|-+.  +..||+||..|.
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCccccccc
Confidence            44699999864       2344455799999 99999999776  357999998775

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=92.17  E-value=0.11  Score=37.05  Aligned_cols=39  Identities=21%  Similarity=0.381  Sum_probs=28.4

Q ss_pred             cccccccccCCceEEe-CCCCchhhHHhHHHHhcc--CCcccc
Q 010517          455 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK--KGDCPV  494 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~--~~~CP~  494 (508)
                      ..|+|.+..+.++|.- .|||.| ..+.+..+-..  ...||+
T Consensus        12 ~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   12 LKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred             cCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence            6899999999999875 999999 99999998733  347998

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=91.54  E-value=0.17  Score=57.14  Aligned_cols=50  Identities=24%  Similarity=0.763  Sum_probs=39.0

Q ss_pred             CCcccccccccc---CCceEEeCCCCchhhHHhHHHHhccCC----------ccccccccccce
Q 010517          452 GSSSSCVICWEA---PVEGACVPCGHMAGCMSCLSEIKAKKG----------DCPVCRTKINQV  502 (508)
Q Consensus       452 ~~~~~C~iC~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~----------~CP~Cr~~i~~~  502 (508)
                      +.+.+|+||+..   ..-.+.+.|+|+| ...|..++...++          .||+|..+|...
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence            345799999976   3556678999999 9999888765432          499999998753

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.46  E-value=0.13  Score=34.34  Aligned_cols=46  Identities=30%  Similarity=0.861  Sum_probs=25.6

Q ss_pred             ccccccccCCceEEeCCC-CchhhHHhHHHHhccCCccccccccccceeE
Q 010517          456 SCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  504 (508)
Q Consensus       456 ~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~  504 (508)
                      .|--|.-.....  +.|. |.. |..|...|......||+|..++...++
T Consensus         4 nCKsCWf~~k~L--i~C~dHYL-Cl~CLt~ml~~s~~C~iC~~~LPtkir   50 (50)
T PF03854_consen    4 NCKSCWFANKGL--IKCSDHYL-CLNCLTLMLSRSDRCPICGKPLPTKIR   50 (50)
T ss_dssp             ---SS-S--SSE--EE-SS-EE-EHHHHHHT-SSSSEETTTTEE----S-
T ss_pred             cChhhhhcCCCe--eeecchhH-HHHHHHHHhccccCCCcccCcCccccC
Confidence            455565554444  4587 665 999999999888899999999876654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=90.93  E-value=0.053  Score=51.31  Aligned_cols=44  Identities=25%  Similarity=0.791  Sum_probs=29.9

Q ss_pred             cccccccccCCceE--EeCCCCchhhHHhHHHHhccCCccccccccccce
Q 010517          455 SSCVICWEAPVEGA--CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  502 (508)
Q Consensus       455 ~~C~iC~~~~~~~~--~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  502 (508)
                      ..|.-| |.+..+.  .+||.|+| |.+|+..-.  .+.||.|-.+|-++
T Consensus        91 HfCd~C-d~PI~IYGRmIPCkHvF-Cl~CAr~~~--dK~Cp~C~d~VqrI  136 (389)
T KOG2932|consen   91 HFCDRC-DFPIAIYGRMIPCKHVF-CLECARSDS--DKICPLCDDRVQRI  136 (389)
T ss_pred             Eeeccc-CCcceeeecccccchhh-hhhhhhcCc--cccCcCcccHHHHH
Confidence            456666 4433222  45999999 999987644  24699998777543

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=90.83  E-value=0.12  Score=47.10  Aligned_cols=44  Identities=27%  Similarity=0.684  Sum_probs=32.9

Q ss_pred             cccccccccc---CCceEEe--C-CCCchhhHHhHHHHhccC-Cccc--ccccc
Q 010517          454 SSSCVICWEA---PVEGACV--P-CGHMAGCMSCLSEIKAKK-GDCP--VCRTK  498 (508)
Q Consensus       454 ~~~C~iC~~~---~~~~~~~--p-CgH~~~C~~C~~~~~~~~-~~CP--~Cr~~  498 (508)
                      +..|+||..-   ..++.++  | |-|.. |.+|..++-... ..||  -|.+-
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~kI   62 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGKI   62 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHHH
Confidence            3589999754   3455555  6 99999 999999987764 4799  78553

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=89.96  E-value=0.24  Score=47.11  Aligned_cols=50  Identities=8%  Similarity=-0.074  Sum_probs=41.0

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010517          454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  505 (508)
Q Consensus       454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i  505 (508)
                      ..+|.+|-+.....+..+|+|+.+|.+|+..  ...+.||.|..-+-..++|
T Consensus       343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i  392 (394)
T KOG2113|consen  343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI  392 (394)
T ss_pred             hcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence            3699999999999999999999999999983  2346799997755566655

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=86.96  E-value=0.69  Score=46.00  Aligned_cols=28  Identities=39%  Similarity=0.898  Sum_probs=20.7

Q ss_pred             CCCchhhHHhHHHHhc-------------cCCcccccccccc
Q 010517          472 CGHMAGCMSCLSEIKA-------------KKGDCPVCRTKIN  500 (508)
Q Consensus       472 CgH~~~C~~C~~~~~~-------------~~~~CP~Cr~~i~  500 (508)
                      |+-+. |.+|.-+|-.             ++..||.||+.++
T Consensus       311 CRPmW-C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMW-CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchH-HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            55556 9999988743             2346999999976

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]

Probab=86.89  E-value=0.7  Score=44.05  Aligned_cols=53  Identities=26%  Similarity=0.602  Sum_probs=33.7

Q ss_pred             CCcccccccccc-------------------CCceEEeCCCCchhhHHhHHHHhcc---------CCccccccccccc--
Q 010517          452 GSSSSCVICWEA-------------------PVEGACVPCGHMAGCMSCLSEIKAK---------KGDCPVCRTKINQ--  501 (508)
Q Consensus       452 ~~~~~C~iC~~~-------------------~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP~Cr~~i~~--  501 (508)
                      ..+.+|++|+..                   +.+..|-||||++ -+.=+.-|.+.         ..-||.|-+.+..  
T Consensus       339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~-sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~  417 (429)
T KOG3842|consen  339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVC-SEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ  417 (429)
T ss_pred             cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccccc-chhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence            346799999864                   2345577999995 33334444432         1249999988863  


Q ss_pred             -eeEe
Q 010517          502 -VIRL  505 (508)
Q Consensus       502 -~i~i  505 (508)
                       +|++
T Consensus       418 ~~ikl  422 (429)
T KOG3842|consen  418 GYIKL  422 (429)
T ss_pred             ceEEE
Confidence             5554

>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ]

Probab=86.53  E-value=0.21  Score=49.38  Aligned_cols=54  Identities=28%  Similarity=0.615  Sum_probs=0.0

Q ss_pred             Ccccccccccc-------------------CCceEEeCCCCchhhHHhHHHHhcc---------CCccccccccccc---
Q 010517          453 SSSSCVICWEA-------------------PVEGACVPCGHMAGCMSCLSEIKAK---------KGDCPVCRTKINQ---  501 (508)
Q Consensus       453 ~~~~C~iC~~~-------------------~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP~Cr~~i~~---  501 (508)
                      ...+|++|+..                   +.+.+|.||||++ =+..+.-|.+.         ...||.|-.++..   
T Consensus       327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g  405 (416)
T PF04710_consen  327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG  405 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence            36799999852                   3466788999997 66666666552         1359999999974   


Q ss_pred             eeEeee
Q 010517          502 VIRLYT  507 (508)
Q Consensus       502 ~i~i~~  507 (508)
                      ++||+|
T Consensus       406 ~vrLiF  411 (416)
T PF04710_consen  406 YVRLIF  411 (416)
T ss_dssp             ------
T ss_pred             ceEEEE
Confidence            777765

; PDB: 3EGB_B 3EGA_A.

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=86.48  E-value=0.26  Score=36.46  Aligned_cols=28  Identities=29%  Similarity=0.694  Sum_probs=23.3

Q ss_pred             CCCCchhhHHhHHHHhcc---CCccccccccc
Q 010517          471 PCGHMAGCMSCLSEIKAK---KGDCPVCRTKI  499 (508)
Q Consensus       471 pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i  499 (508)
                      -|.|.| -..|+.++...   ...||+||+..
T Consensus        50 ~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   50 YCLHAF-HAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             HHHHHH-HHHHHHHHhcCccccccCCcchhee
Confidence            699999 99999998764   35799999865

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=86.15  E-value=0.57  Score=36.93  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=27.2

Q ss_pred             ceEEeCCCCchhhHHhHHHHhccCCcccccccc
Q 010517          466 EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK  498 (508)
Q Consensus       466 ~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~  498 (508)
                      .++---|.|.| ...|+.+|.+++..||+|.+.
T Consensus        75 ~VaWG~CNHaF-H~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   75 TVAWGVCNHAF-HFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             EEEeeecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence            34444899999 999999999999999999764

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.85  E-value=0.58  Score=46.38  Aligned_cols=40  Identities=23%  Similarity=0.532  Sum_probs=31.0

Q ss_pred             eEEeCCCCchhhHHhHHHHhccCC---cccccccccc--ceeEeee
Q 010517          467 GACVPCGHMAGCMSCLSEIKAKKG---DCPVCRTKIN--QVIRLYT  507 (508)
Q Consensus       467 ~~~~pCgH~~~C~~C~~~~~~~~~---~CP~Cr~~i~--~~i~i~~  507 (508)
                      ++-+.|||+. |.+-+.+|.+...   +||+|-....  +..|||+
T Consensus       350 Pm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F  394 (394)
T KOG2817|consen  350 PMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF  394 (394)
T ss_pred             Ceeeecccee-cHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence            5567899999 9999999987533   7999976553  5777764

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=85.14  E-value=5.3  Score=35.62  Aligned_cols=113  Identities=19%  Similarity=0.128  Sum_probs=75.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHH----HHHHHcCCCCcccCCCCCCCcHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA----KTLIELGANINAYRPGGRGGTPLH   91 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v----~~Ll~~ga~~n~~~~d~~g~tpLh   91 (508)
                      ..++.+-.||+..+.++|+++-+   ++...  +-.+-.-+|..+ .+.++.    +++..+...-...|++.--..-|.
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~q---nL~i~--~~~~iFdIA~~~-kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~  148 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQ---NLHIY--NPEDIFDIAFAK-KDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLE  148 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhh---ccCCC--Cchhhhhhhhhc-cchhHHHHHHHHHHhhcccccccCHHHHHHHHHH
Confidence            45788899999999999999933   32222  223555567665 665542    223333221111111111123477


Q ss_pred             HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 010517           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  140 (508)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~  140 (508)
                      .|+..|....|.-.+++|.+++.      +.|..|+..+|..++.+++.
T Consensus       149 ~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  149 KAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            89999999999999999987653      79999999999999998864

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.92  E-value=2.2  Score=32.26  Aligned_cols=47  Identities=21%  Similarity=0.142  Sum_probs=29.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHc
Q 010517           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL   73 (508)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~   73 (508)
                      .-|..|+..|+.++++.+++.+ .++      ...|..|+.. .+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~-H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKS-HNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHH-hhHHHHHHHHHh
Confidence            4556777777777777766543 111      3456666665 666777777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PHA02862 5L protein; Provisional

Probab=84.68  E-value=0.86  Score=38.47  Aligned_cols=45  Identities=29%  Similarity=0.521  Sum_probs=35.1

Q ss_pred             cccccccccCCceEEeCCCC----chhhHHhHHHHhcc--CCcccccccccc
Q 010517          455 SSCVICWEAPVEGACVPCGH----MAGCMSCLSEIKAK--KGDCPVCRTKIN  500 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH----~~~C~~C~~~~~~~--~~~CP~Cr~~i~  500 (508)
                      ..|=||++...+. ..||+.    .++..+|..+|-..  +..|++|+.+..
T Consensus         3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            5899999986544 479985    45589999999865  357999998774

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=84.07  E-value=0.4  Score=39.08  Aligned_cols=29  Identities=31%  Similarity=0.814  Sum_probs=22.8

Q ss_pred             ccccccccccCCce--EEeCCCCchhhHHhHH
Q 010517          454 SSSCVICWEAPVEG--ACVPCGHMAGCMSCLS  483 (508)
Q Consensus       454 ~~~C~iC~~~~~~~--~~~pCgH~~~C~~C~~  483 (508)
                      ...|.||.......  ++.||||.+ +..|..
T Consensus        78 ~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~  108 (109)
T PF10367_consen   78 STKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK  108 (109)
T ss_pred             CCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence            36899999986544  455999999 999965

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PHA03096 p28-like protein; Provisional

Probab=83.82  E-value=0.68  Score=44.73  Aligned_cols=44  Identities=20%  Similarity=0.216  Sum_probs=31.4

Q ss_pred             cccccccccCC--------ceEEeCCCCchhhHHhHHHHhccC------Cccccccccc
Q 010517          455 SSCVICWEAPV--------EGACVPCGHMAGCMSCLSEIKAKK------GDCPVCRTKI  499 (508)
Q Consensus       455 ~~C~iC~~~~~--------~~~~~pCgH~~~C~~C~~~~~~~~------~~CP~Cr~~i  499 (508)
                      -.|.||||...        ...+-.|.|.| |..|...|...+      +.||.||..+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~wr~~~~~~e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIWMTESLYKETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHHHHhhhhcccCccccchhhHH
Confidence            48999999732        23445899999 999999987642      3466665544

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=82.81  E-value=0.61  Score=44.19  Aligned_cols=45  Identities=31%  Similarity=0.731  Sum_probs=31.6

Q ss_pred             cccccccccCCc---eEEeCCCCchhhHHhHHHHhc------------------c-----CCcccccccccc
Q 010517          455 SSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKA------------------K-----KGDCPVCRTKIN  500 (508)
Q Consensus       455 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~------------------~-----~~~CP~Cr~~i~  500 (508)
                      ..|+||+--+.+   ....+|-|.+ ...|..+...                  .     +-.||+||..|.
T Consensus       116 gqCvICLygfa~~~~ft~T~C~Hy~-H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  116 GQCVICLYGFASSPAFTVTACDHYM-HFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CceEEEEEeecCCCceeeehhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            578888766543   4456999999 8888665422                  0     124999999985

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=82.49  E-value=1.4  Score=38.09  Aligned_cols=47  Identities=21%  Similarity=0.383  Sum_probs=35.4

Q ss_pred             CccccccccccCCceEEeCCCCc----hhhHHhHHHHhccC--Ccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHM----AGCMSCLSEIKAKK--GDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~~~~~~--~~CP~Cr~~i~  500 (508)
                      .+..|-||++.... ...||...    ++..+|..+|-..+  ..|++|+.+..
T Consensus         7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            34699999998653 34688852    45899999998753  57999998874

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=81.30  E-value=0.86  Score=43.06  Aligned_cols=42  Identities=24%  Similarity=0.561  Sum_probs=33.6

Q ss_pred             cccccccccCCceEEe-CCCCchhhHHhHHHHh-ccCCccccccc
Q 010517          455 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIK-AKKGDCPVCRT  497 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~-~~~~~CP~Cr~  497 (508)
                      ..|+.|....+.++-. -|+|.| |.+|+.... ...-.||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence            6899999988888777 578999 999988643 33457999976

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=80.98  E-value=2.9  Score=31.63  Aligned_cols=19  Identities=11%  Similarity=-0.031  Sum_probs=8.8

Q ss_pred             HHHHHHHhCCHHHHHHHHH
Q 010517          122 ALGVARIKGHINVVRAIES  140 (508)
Q Consensus       122 pLh~A~~~g~~~~v~~Ll~  140 (508)
                      .|..|+...+.+++++|++
T Consensus        35 ~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen   35 CLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHHHhhHHHHHHHHH
Confidence            3444444444444444443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=80.53  E-value=0.69  Score=45.44  Aligned_cols=45  Identities=31%  Similarity=0.692  Sum_probs=35.4

Q ss_pred             ccccccccc----CCceEEeCCCCchhhHHhHHHHhccC--Ccccccccccc
Q 010517          455 SSCVICWEA----PVEGACVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKIN  500 (508)
Q Consensus       455 ~~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~  500 (508)
                      .-|..|-+.    +...-.+||.|.| ...|+..+...+  ..||-||+-++
T Consensus       366 L~Cg~CGe~~Glk~e~LqALpCsHIf-H~rCl~e~L~~n~~rsCP~CrklrS  416 (518)
T KOG1941|consen  366 LYCGLCGESIGLKNERLQALPCSHIF-HLRCLQEILENNGTRSCPNCRKLRS  416 (518)
T ss_pred             hhhhhhhhhhcCCcccccccchhHHH-HHHHHHHHHHhCCCCCCccHHHHHh
Confidence            589999886    4455567999999 999999876554  57999996544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	508
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		9e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-07
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		7e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-05
2yhn_A	79	The Idol-Ube2d Complex Mediates Sterol-Dependent De		3e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-05
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		9e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-04
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-04
2hdp_A	63	Solution Structure Of Hdm2 Ring Finger Domain Lengt		2e-04
2vje_A	64	Crystal Structure Of The Mdm2-Mdmx Ring Domain Hete		2e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-04
3eb5_A	74	Structure Of The Ciap2 Ring Domain Length = 74		6e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-04
1uoh_A	226	Human Gankyrin Length = 226		7e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA    GR  
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
           TPLH AA+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+ +
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L S+GA +   D +G+TPL  A  ++G   V K LI  GA++NA    GR  
Sbjct: 48  GHKEVVKLLISKGADVNAKDSDGRTPLHHAA-ENGHKEVVKLLISKGADVNAKDSDGR-- 104
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPLHHAA+ G +  V+LL+S GA+    + D  T L +AR  G+  VV+ +E       G
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ----GG 160
Query: 148 WL 149
           WL
Sbjct: 161 WL 162

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L S+GA +   D +G+TPL  A  + G   + K LI  GA++NA    GR  
Sbjct: 48  GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE-GHKEIVKLLISKGADVNAKDSDGR-- 104
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPLH+AAK G +  V+LL+S GA+    + D  T L +AR  G+  +V+ +E       G
Sbjct: 105 TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ----GG 160
Query: 148 WL 149
           WL
Sbjct: 161 WL 162

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L SQGA     D +GKTPL +A  ++G   V K L+  GA+ NA    G+  
Sbjct: 48  GHKEVVKLLLSQGADPNAKDSDGKTPLHLAA-ENGHKEVVKLLLSQGADPNAKDSDGK-- 104
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPLH AA+ G +  V+LLLS GA+    + D  T L +AR  G+  VV+ +E       G
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ----GG 160
Query: 148 WLR 150
           WL 
Sbjct: 161 WLE 163

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 69
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 70  -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 24  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 82  -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGY- 69
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 70  -TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D +G TPL +A   +G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNATDNDGYTPLHLAA-SNGHLEIVEVLLKNGADVNA--SDLTG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+    ++D HT L +A   GH+ +V  +  H
Sbjct: 81  ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L S+GA     D +G+TPL  A  ++G   + K L+  GA+ NA    GR  
Sbjct: 48  GHKEIVKLLLSKGADPNAKDSDGRTPLHYAA-ENGHKEIVKLLLSKGADPNAKDSDGR-- 104
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPLH+AA+ G +  V+LLLS GA+    + D  T L +AR  G+  +V+ +E       G
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ----GG 160
Query: 148 WL 149
           WL
Sbjct: 161 WL 162

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A   +G + + + L++ GA++NA+     G
Sbjct: 24  AGQDDEVRILMANGADVNATDWLGHTPLHLAA-KTGHLEIVEVLLKYGADVNAW--DNYG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA  G    V +LL  GA+   ++ +  T L +A   GH+ +V  +
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           G+TPL +A  + G + V K L+E GA++NA    GR  TPLH AA+ G    V+LLL  G
Sbjct: 2   GRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58
Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAI 138
           A+   ++ +  T L +A   GH+ VV+ +
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NAY     G
Sbjct: 24  AGRDDEVRILMANGADVNAADVVGWTPLHLAAY-WGHLEIVEVLLKNGADVNAYDT--LG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA  G    V +LL  GA+   ++D+  T L +A  +GH+ +V  +
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNAEDTYGDTPLHLAAR-VGHLEIVEVLLKNGADVNAL--DFSG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AAKRG    V +LL  GA+    +    T L +A   GH+ +V  +
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNARDFTGWTPLHLAA-HFGHLEIVEVLLKNGADVNA--KDSLG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA+RG    V +LL  GA+    +    T L +A  +GH+ +V  +
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
           N  + + +  S    L+   I G ++ +  L   GA +   DK G TPL +A +  G + 
Sbjct: 36  NGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAAL-YGHLE 94
Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           + + L++ GA++NA      G TPLH AA  G    V +LL  GA+   ++    TA  +
Sbjct: 95  IVEVLLKNGADVNA--TDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 126 ARIKGHINVVRAIE 139
           +   G+ ++   ++
Sbjct: 153 SIDNGNEDLAEILQ 166

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNASDHVGWTPLHLAAY-FGHLEIVEVLLKNGADVNA--DDSLG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA RG    V +LL  GA+    + +  T L +A   GH+ +V  +  H
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 8/109 (7%)
Query: 31  DAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           + ++ L  +GA ++ +D K G++PLI A  ++ L ++ + L++ GAN+NA    G   + 
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-SMVQLLLQHGANVNAQMYSG--SSA 186
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCH--TALGVARIKGHINVVR 136
           LH A+ RGL P VR L+  GA++ ++N  CH  T L VAR +  I+++R
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLKN--CHNDTPLMVARSRRVIDILR 233

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA     D  G+TPL +A    G + + + L+  GA++NA    G  
Sbjct: 12  AGQDDEVRILMANGADANAYDHYGRTPLHMAAA-VGHLEIVEVLLRNGADVNAVDTNGT- 69
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+   ++    T L +A   GH+ +V  +  H
Sbjct: 70  -TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA    G  
Sbjct: 24  AGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAIDIXG-- 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+    +    T L +A I GH+ +V  +  H
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAIDI--MG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+    +    T L +A I GH+ +V  +  H
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A  + G + + + L++ GA++NA    G  
Sbjct: 24  AGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAVDHAGM- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPL  AA  G    V +LL  GA+    + + HT L +A + GH+ +V  +
Sbjct: 82  -TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 45  WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
           W  K+G TPL  A  + G     K L+  GA++NA    G   TPLH AAK G    V+L
Sbjct: 4   WGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNARSKDGN--TPLHLAAKNGHAEIVKL 60
Query: 105 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           LL+ GA+   R+ D +T   +A+  GH  +V+ +++
Sbjct: 61  LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D +G TPL +A    G   + + L++ GA++NA    G  
Sbjct: 24  AGQDDEVRILMANGADVNAHDDQGSTPLHLAAW-IGHPEIVEVLLKHGADVNARDTDG-- 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+   ++    T L +A  +GH+ +V  +  H
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A   SG + + + L++ GA+++A    G  
Sbjct: 24  AGQDDEVRILMANGADVNAADNTGTTPLHLAAY-SGHLEIVEVLLKHGADVDASDVFGY- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPLH AA  G    V +LL  GA+    + D  T L +A   G++ +V  +  H
Sbjct: 82  -TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D  G TPL +A  + G + + + L++ GA++NA 
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAAN-GQLEIVEVLLKNGADVNAS 68
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              G   TPLH AA  G    V +LL  GA+    +    T L +A + G + +V  +  
Sbjct: 69  DSAGI--TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 141 H 141
           H
Sbjct: 127 H 127

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 61  SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
           +G  +  + L+  GA++NA    G   TPLH AA  G    V +LL  GA+    +    
Sbjct: 16  AGQDDEVRILMANGADVNATDDNGL--TPLHLAAANGQLEIVEVLLKNGADVNASDSAGI 73
Query: 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 165
           T L +A   GH+ +V  +  H      + R  + P  L AL+ QL
Sbjct: 74  TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQL 118

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  +D  G TPL +A + SG + + + L++ GA+++A      G
Sbjct: 24  AGQDDEVRILIANGADVNAVDNTGLTPLHLAAV-SGHLEIVEVLLKHGADVDA--ADVYG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA  G    V +LL  GA+    +    T L +A  +GH+ +V  +
Sbjct: 81  FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +  +++G + + + L++  A++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNANDWFGITPLHLV-VNNGHLEIIEVLLKYAADVNA--SDKSG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH AA RG    V +LL  GA+    +   +T L +A   GH+ +V  +
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y     GG
Sbjct: 63  GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNGG 119
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+     
Sbjct: 120 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 179
Query: 148 WLRE 151
            ++E
Sbjct: 180 NIKE 183

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y     GG
Sbjct: 47  GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNGG 103
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG 147
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+     
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163
Query: 148 WLRE 151
            ++E
Sbjct: 164 NIKE 167

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  MD  G TPL +A    G + + + L++ GA++NA    GR 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNASDSWGR- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  MD  G TPL +A    G + + + L++ GA++NA    GR 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNARDIWGR- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  +D++G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNALDEDGLTPLHLAA-QLGHLEIVEVLLKYGADVNA--EDNFG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA RG    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 81  ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +  MD  G TPL +A    G + + + L++ GA++NA    GR 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAA-KRGHLEIVEVLLKHGADVNASDIWGR- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y     GG
Sbjct: 45  GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNGG 101
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+
Sbjct: 102 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 156

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           +GD + +  L  +GA + + + +G T L  AC+D   +++ K L+E GANIN  +P   G
Sbjct: 50  SGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENGANIN--QPDNEG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
             PLH AA  G       L+S GA+    N +  T L +
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D++G TPL +A  D   + + + L++ GA++NA+     G
Sbjct: 24  AGQDDEVRILMANGADVNANDRKGNTPLHLAA-DYDHLEIVEVLLKHGADVNAH--DNDG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 81  STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   DK G TPL +A M+  L  + + L++ GA++NA    G  
Sbjct: 24  AGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHL-EIVEVLLKNGADVNAIDAIGE- 81
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH  A  G    V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 82  -TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  V   ++D ++ L  +G S       G TPL +A   +  + VA++L++ G + NA 
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ-VEVARSLLQYGGSANA- 240
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
               +G TPLH AA+ G    V LLLS  AN  + N    T L +   +GH+ V   +  
Sbjct: 241 -ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Query: 141 HICYFCGWLREFYGP 155
           H        R  Y P
Sbjct: 300 HGVMVDATTRMGYTP 314

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D  G TPL +A M  G + + + L++ GA++NA   G  G
Sbjct: 24  AGQDDEVRILTANGADVNANDYWGHTPLHLAAM-LGHLEIVEVLLKNGADVNA--TGNTG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            TPLH AA       V +LL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ +R L   GA    + KE ++ L +A    G  ++   L+E   +IN Y     GG
Sbjct: 47  GEIETVRFLLEWGADPHILAKERESALSLAST-GGYTDIVGLLLERDVDINIY--DWNGG 103
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
           TPL +A +      V  LL+ GA+     D  +T + +A   G+  V + IE+HI 
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 18  DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
           + LL+   I GD+ ++  L   G+     D  G TPL  AC + G + V + L++  A +
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC-NHGHLKVVELLLQHKALV 69
Query: 78  NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
           N    G +  +PLH AAK G    V+LLLS GA+
Sbjct: 70  NT--TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ +R L   GA    + KE ++ L +A    G  ++   L+E   +IN Y     GG
Sbjct: 47  GEIETVRFLLEWGADPHILAKERESALSLAST-GGYTDIVGLLLERDVDINIYD--WNGG 103
Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
           TPL +A        V  LL+ GA+     D  +T + +A   G+  V + IE+HI 
Sbjct: 104 TPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 457 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
           C++C E  +     PCGH   C SC +++++    CPVCR+++  V  +Y
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQS----CPVCRSRVEHVQHVY 66

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 22  YQWVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           + W +  GD+D ++   ++G  +    + G+ PL  A  D G + + + L+  GA+INA 
Sbjct: 6   FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA- 63
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
            P     TPL  A   G    V+LLLS GA+  V+  D  TAL
Sbjct: 64  -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
           L S+G+++   D  GKTPL+ + +  G   ++  L+E GAN+N     G   TPL  A+K
Sbjct: 87  LLSKGSNVNTKDFSGKTPLMWSII-FGYSEMSYFLLEHGANVNDRNLEGE--TPLIVASK 143
Query: 96  RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            G    V+ LL  GA+   R+    TA   ARI G   V++
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 54  LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           L++  + +  +++ + L+E GAN+N     G G TPLH+A +   E  V LLL  GA+ +
Sbjct: 28  LLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 114 VRNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEA 160
           +R  +  T   +A I G + +++   S     + C F G+       +F+EA
Sbjct: 87  LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 132

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
           MN   + Q+K   L+    AG VD    L   GA+++   ++ +TPL+ A  ++ L    
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL-EAV 60
Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
           K LI+ GA ++       G T LH AAK+G    V+ LLS G   +   DD
Sbjct: 61  KYLIKAGALVDP--KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  D +R L + GA +   D+ G TPL +A    G + + + L++ GA++NA      G
Sbjct: 24  AGQDDEVRILMANGADVNAKDEYGLTPLYLATA-HGHLEIVEVLLKNGADVNAV--DAIG 80
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
            TPLH AA  G      +LL  GA+   ++    TA  ++
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 22  YQWVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           + W +  GD+D ++   ++G  +    + G+ PL  A  D G + + + L+  GA+INA 
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA- 68
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
            P     TPL  A   G    V+LLLS GA+  V+  D  TA 
Sbjct: 69  -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA++NA      G
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGXDEIVKALLVKGAHVNAVNQ--NG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ +V     HI  F
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV-----HILLF 160

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 54  LIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           L++  + +  +++ + L+E GAN+N     G G TPLH+A +   E  V LLL  GA+ +
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 114 VRNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEA 160
           +R  +  T   +A I G + +++   S     + C F G+       +F+EA
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 112

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         TP
Sbjct: 55  VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 111
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           LH AA +G     +LLL  GA+   +N D +T L + +
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+   + G  D I  L   GA+    + +   PL +AC   G   V K L++  A  N  
Sbjct: 90  LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ-QGHFQVVKCLLDSNAKPN-- 146
Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           +    G TPL +A   G    V LLL  GA+    N+  +TAL  A I+ H+ VV  +  
Sbjct: 147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL 206
Query: 141 H 141
           H
Sbjct: 207 H 207

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         TP
Sbjct: 57  VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 113
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           LH AA +G     +LLL  GA+   +N D +T L + +
Sbjct: 114 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA++NA      G
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLVKGAHVNAVNQ--NG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ +V     HI  F
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV-----HILLF 160

>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain Length = 63

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 457 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
           CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 10  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61

>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer Length = 64

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 457 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
           CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 11  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         TP
Sbjct: 59  VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKF--TP 115
Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           LH AA +G     +LLL  GA+   +N D +T L + +
Sbjct: 116 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153

>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 456 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
           +C +C +  V    +PCGH+  C  C   ++     CP+CR+ I   +R +
Sbjct: 26  TCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIKGTVRTF 72

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
          AG  D +R L + GA +   DK G TPL +A  + G + V K L+E GA++NA    G+
Sbjct: 16 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVNAQDKFGK 73

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA +NA      G
Sbjct: 51  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLGKGAQVNAVNQ--NG 107
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ ++  +
Sbjct: 108 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           AG  + +  L   G  +   D  G +PL +A   +G   + K L+  GA +NA      G
Sbjct: 50  AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGRDEIVKALLGKGAQVNAVNQ--NG 106
Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
            TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ ++  +
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	508
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	1e-17
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	1e-16
2rfa_A	232	Transient receptor potential cation channel subfa	4e-15
2rfa_A	232	Transient receptor potential cation channel subfa	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	1e-13
2rfa_A	232	Transient receptor potential cation channel subfa	4e-12
2rfa_A	232	Transient receptor potential cation channel subfa	6e-05
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	6e-16
2pnn_A	273	Transient receptor potential cation channel subfa	4e-15
2pnn_A	273	Transient receptor potential cation channel subfa	5e-14
2pnn_A	273	Transient receptor potential cation channel subfa	3e-11
2pnn_A	273	Transient receptor potential cation channel subfa	4e-10
2pnn_A	273	Transient receptor potential cation channel subfa	4e-10
2etb_A	256	Transient receptor potential cation channel subfam	9e-15
2etb_A	256	Transient receptor potential cation channel subfam	3e-14
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2etb_A	256	Transient receptor potential cation channel subfam	2e-11
2etb_A	256	Transient receptor potential cation channel subfam	1e-05
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	1e-14
2ea5_A	68	Cell growth regulator with ring finger domain prot	1e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	8e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-04
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	7e-09
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	4e-08
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	6e-07
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	9e-07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	4e-06
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	1e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	6e-04
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	9e-04

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (256), Expect = 5e-26
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD+ ++  L   G+     D  G TPL  AC   G + V + L++  A +N    G +  
Sbjct: 21  GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNT--TGYQND 77

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +PLH AAK G    V+LLLS GA+    N      +     +   +++   E +
Sbjct: 78  SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           +  G+T L +A    G I   + L++ G++ N     G   TPLH A   G    V LLL
Sbjct: 7   NHRGETLLHIAS-IKGDIPSVEYLLQNGSDPNVKDHAGW--TPLHEACNHGHLKVVELLL 63

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
              A          + L  A   GH+++V+
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVK 93

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 68.6 bits (169), Expect = 3e-14
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L    A +     +  +PL  A   +G +++ K L+  GA+ NA    G   
Sbjct: 54  GHLKVVELLLQHKALVNTTGYQNDSPLHDAAK-NGHVDIVKLLLSYGASRNAVNIFGL-- 110

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
            P+ +     ++  + L     ++
Sbjct: 111 RPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           G +        RG T LH A+ +G  P+V  LL  G++  V++    T L  A   GH+ 
Sbjct: 1   GIDPFT---NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK 57

Query: 134 VVR 136
           VV 
Sbjct: 58  VVE 60

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.4 bits (249), Expect = 1e-24
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ +R L   GA    + KE ++ L +A    G  ++   L+E   +IN Y   G   
Sbjct: 47  GEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYDWNGG-- 103

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL +A +      V  LL+ GA+     D  +T + +A   G+  V + IE+H
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.1 bits (230), Expect = 5e-22
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 28  GDVDAIRALRSQGASLE-WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G++D ++    +G +L    D+ G TPLI A    G I   + L+E GA+ +        
Sbjct: 13  GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHILAKERE- 70

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            + L  A+  G    V LLL    +  + + +  T L  A    H+  V 
Sbjct: 71  -SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +  L  +   +   D  G TPL+ A      +   + L+  GA++        G 
Sbjct: 80  GYTDIVGLLLERDVDINIYDWNGGTPLLYAVR-GNHVKCVEALLARGADLTT--EADSGY 136

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT 121
           TP+  A   G     +++ +        N     
Sbjct: 137 TPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 72.4 bits (179), Expect = 3e-15
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGAN-INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
               +       G ++  K  +  G N +N     G   TPL  A+  G   TVR LL  
Sbjct: 2   DSLSIHQLAA-QGELDQLKEHLRKGDNLVNKPDERGF--TPLIWASAFGEIETVRFLLEW 58

Query: 109 GANALVRNDDCHTALGVARIKGHINVVR 136
           GA+  +   +  +AL +A   G+ ++V 
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVG 86

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 98.6 bits (247), Expect = 2e-24
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y   G   
Sbjct: 47  GQIAVVEFLLQNGADPQLLGKGRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGG-- 103

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL +A        V++LL  GA+  +  D  + ++ +A   G+ +V + IESH
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.5 bits (239), Expect = 2e-23
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G++  +     Q   +   D+EG TPL+ A    G I V + L++ GA+      G    
Sbjct: 14  GEMLYLATRIEQENVINHTDEEGFTPLMWAAA-HGQIAVVEFLLQNGADPQLLGKGRE-- 70

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           + L  A  +G    V++LL CG +    + +  T L  A    H+  V+
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 78.6 bits (195), Expect = 2e-17
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
               +       G +    T IE    IN     G   TPL  AA  G    V  LL  G
Sbjct: 3   NSLSVHQLAA-QGEMLYLATRIEQENVINHTDEEGF--TPLMWAAAHGQIAVVEFLLQNG 59

Query: 110 ANALVRNDDCHTALGVARIKGHINVVR 136
           A+  +      +AL +A  KG+ ++V+
Sbjct: 60  ADPQLLGKGRESALSLACSKGYTDIVK 86

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 78.6 bits (195), Expect = 2e-17
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D ++ L   G  +   D  G TPL+ A      +   K L+E GA+         G 
Sbjct: 80  GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH-GNHVKCVKMLLESGADPTI--ETDSGY 136

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
             +  A   G     +++ S     L    +
Sbjct: 137 NSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 61.6 bits (151), Expect = 2e-11
 Identities = 11/53 (20%), Positives = 18/53 (33%)

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           G     +H  A +G    +   +         +++  T L  A   G I VV 
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVE 53

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 98.3 bits (246), Expect = 1e-23
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G    +  L ++G  ++ MD+ G TPL+ A   +  ++  + L+    ++N         
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHKN 178

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH A   G    + LLL  GAN   +N    +AL +A+ + ++ ++  ++  
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 94.4 bits (236), Expect = 4e-22
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  +  R L   G  +   DKE  T L  A + +  I++ K  I  GA ++    G    
Sbjct: 20  GIYERCRELVEAGYDVRQPDKENVTLLHWAAI-NNRIDLVKYYISKGAIVDQ-LGGDLNS 77

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH A ++G    V  L+  GA+  + + +  + + +A   GH ++V 
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 85.2 bits (212), Expect = 6e-19
 Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
             +D ++   S+GA ++ +  +   TPL  A    G +++   L++ GA+ +     G G
Sbjct: 53  NRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT-RQGHLSMVVQLMKYGADPSL--IDGEG 109

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESH 141
            + +H AA+ G    V  L++ G +  + + +  T L  A  + H ++  R + + 
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 81.3 bits (202), Expect = 1e-17
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           +D      ++ A    G+    + L+E G ++    P     T LH AA       V+  
Sbjct: 5   IDDYSTWDIVKATQ-YGIYERCRELVEAGYDVRQ--PDKENVTLLHWAAINNRIDLVKYY 61

Query: 106 LSCGANALVRNDDC-HTALGVARIKGHINVVR 136
           +S GA       D   T L  A  +GH+++V 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.9 bits (175), Expect = 4e-14
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 30  VDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
           VD  R L +   S+   DK    T L  A + +G   V   L+E GAN++A     +G +
Sbjct: 156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVL-AGNTTVISLLLEAGANVDA--QNIKGES 212

Query: 89  PLHHAAKRGLEPTVRLLLSCGAN 111
            L  A +R     +  L      
Sbjct: 213 ALDLAKQRKNVWMINHLQEARQA 235

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 76  NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           ++            +  A + G+    R L+  G +    + +  T L  A I   I++V
Sbjct: 1   HMTH--IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLV 58

Query: 136 R 136
           +
Sbjct: 59  K 59

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.0 bits (113), Expect = 4e-06
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           G+   I  L   GA+++  + +G++ L +A      + +   L E       
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQ-RKNVWMINHLQEARQAKGY 238

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 93.9 bits (235), Expect = 3e-23
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA    GR  
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH AA+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.1 bits (199), Expect = 2e-18
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           G+TPL +A   +G + V K L+E GA++NA    GR  TPLH AA+ G    V+LLL  G
Sbjct: 2   GRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           A+   ++ +  T L +A   GH+ VV+ +   
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 77.4 bits (192), Expect = 2e-17
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A   +G + V K L+E GA++NA    GR  
Sbjct: 46  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGR-- 102

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA 110
           TPLH AA+ G    V+LLL  GA
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAGA 125

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 94.0 bits (235), Expect = 4e-23
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ +R L   GA    +++ G+ P+ V  M  G   VA+ L+  GA  N         
Sbjct: 23  GQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNC--ADPATL 78

Query: 88  T-PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T P+H AA+ G   T+ +L   GA   V +      + +A  +GH ++ R + + 
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
              +  +       L  A    G +   + L+E GA+ NA    GR   P+        +
Sbjct: 2   SPGIHMLGGSSDAGLATAAA-RGQVETVRQLLEAGADPNALNRFGR--RPIQVMMMGSAQ 58

Query: 100 PTVRLLLSCGANALVRNDDCHT-ALGVARIKGHINVVR 136
               LLL  GA     +    T  +  A  +G ++ + 
Sbjct: 59  -VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKT-PLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G       L   GA     D    T P+  A    G ++    L   GA ++       G
Sbjct: 55  GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDV--CDAWG 111

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGAN 111
             P+  A ++G     R L +   +
Sbjct: 112 RLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 61.7 bits (151), Expect = 8e-12
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
              I+    GG     L  AA RG   TVR LL  GA+    N      + V  + G   
Sbjct: 2   SPGIHM--LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQ 58

Query: 134 VVRAIESH 141
           V   +  H
Sbjct: 59  VAELLLLH 66

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 94.9 bits (237), Expect = 4e-23
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ +RAL   GA+    +  G+ P+ V  M  G   VA+ L+  GA  N         
Sbjct: 23  GRVEEVRALLEAGANPNAPNSYGRRPIQVMMM--GSARVAELLLLHGAEPNC--ADPATL 78

Query: 88  T-PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T P+H AA+ G   T+ +L   GA   VR+      + +A   GH +V R + + 
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 82.9 bits (206), Expect = 6e-19
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 9/109 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKT-PLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G       L   GA     D    T P+  A    G ++    L   GA ++       G
Sbjct: 55  GSARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDV--RDAWG 111

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
             P+  A + G     R L +                 +   +G  ++ 
Sbjct: 112 RLPVDLAEELGHRDVARYLRAAAGGT-----RGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
            +     L  A    G +   + L+E GAN NA  P   G  P+             LLL
Sbjct: 9   MEPSADWLATAAA-RGRVEEVRALLEAGANPNA--PNSYGRRPIQVMMMGSAR-VAELLL 64

Query: 107 SCGANALVRNDDCHT-ALGVARIKGHINVVRA 137
             GA     +    T  +  A  +G ++ +  
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 71  IELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 130
           +E  A  +           L  AA RG    VR LL  GAN    N      + V  + G
Sbjct: 1   MEPAAGSSMEP----SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMG 55

Query: 131 HINVVRAIESH 141
              V   +  H
Sbjct: 56  SARVAELLLLH 66

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 93.2 bits (233), Expect = 4e-23
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD+D ++   ++G  +    + G+ PL  A  D G + + + L+  GA+INA  P     
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA--PDKHHI 74

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPL  A   G    V+LLLS GA+  V+  D  TA      +    +++
Sbjct: 75  TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.8 bits (193), Expect = 1e-17
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           +        + A   +G ++  K  +  G ++N    GGR   PLH+AA  G    +  L
Sbjct: 3   LGSMCDKEFMWAL-KNGDLDEVKDYVAKGEDVNRTLEGGR--KPLHYAADCGQLEILEFL 59

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVVR 136
           L  GA+    +    T L  A  +GH++ V+
Sbjct: 60  LLKGADINAPDKHHITPLLSAVYEGHVSCVK 90

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 94.4 bits (236), Expect = 5e-23
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 28  GDVDAIRAL-RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           GDV  +R L   +    + +++ GKT L V    S    +A  L++ GA+ N     G  
Sbjct: 13  GDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS--TAIALELLKQGASPNVQDTSGT- 69

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            +P+H AA+ G   T+++L+  GA+  V +      + +A  +GH  VV  + + 
Sbjct: 70  -SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 91.7 bits (229), Expect = 4e-22
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G       L  QGAS    D  G +P+  A   +G ++  K L+E GA++N   P G G 
Sbjct: 46  GSTAIALELLKQGASPNVQDTSGTSPVHDAA-RTGFLDTLKVLVEHGADVNV--PDGTGA 102

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
            P+H A + G    V  L +  ++   R+    T L +A  +G  ++V  ++ H+
Sbjct: 103 LPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.7 bits (159), Expect = 1e-12
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
               L  A     +  V + L     + +A      G T L              LL  G
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMMFGSTA-IALELLKQG 58

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           A+  V++    + +  A   G ++ ++ +  H
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 85  RGGTPLHHAAKRG-LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           R G  L  AA RG ++   RLL     +    N    TAL V  + G   +   +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQ 57

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.9 bits (250), Expect = 7e-23
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V     L   G  ++   + G TPL VA    G I + K L++  A++NA      G 
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVAS-HYGNIKLVKFLLQHQADVNA--KTKLGY 345

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +PLH AA++G    V LLL  GA+    + D  T L +A+  G+I+V  
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.1 bits (248), Expect = 2e-22
 Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ + AL  + AS   M K+G TPL VA    G + VA+ L+E  A+ NA   G  G 
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAK-YGKVRVAELLLERDAHPNA--AGKNGL 180

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH A        V+LLL  G +      + +T L +A  +  + V R
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.3 bits (246), Expect = 2e-22
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
           S G S     + G TPL VA    G + + K L++ GA+ N      +  TPLH AA+ G
Sbjct: 2   SPGISGGGGGESGLTPLHVASF-MGHLPIVKNLLQRGASPNV--SNVKVETPLHMAARAG 58

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                + LL   A    +  D  T L  A   GH N+V+ +  +
Sbjct: 59  HTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.3 bits (246), Expect = 3e-22
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  ++ L  +GAS    + + +TPL +A   +G   VAK L++  A +NA        
Sbjct: 25  GHLPIVKNLLQRGASPNVSNVKVETPLHMAAR-AGHTEVAKYLLQNKAKVNAK--AKDDQ 81

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH AA+ G    V+LLL   AN  +     HT L +A  +GH+  V 
Sbjct: 82  TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.6 bits (244), Expect = 4e-22
 Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
             AG  +  + L    A +    K+ +TPL  A    G  N+ K L+E  AN N      
Sbjct: 55  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR-IGHTNMVKLLLENNANPNL--ATT 111

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            G TPLH AA+ G   TV  LL   A+         T L VA   G + V  
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.2 bits (243), Expect = 5e-22
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            ++D ++ L  +G S       G TPL +A      + VA++L++ G + NA     +G 
Sbjct: 190 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGSANA--ESVQGV 246

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA+ G    V LLLS  AN  + N    T L +   +GH+ V   +  H
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.8 bits (242), Expect = 8e-22
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L    A+       G TPL +A    G +     L+E  A+       G   
Sbjct: 91  GHTNMVKLLLENNANPNLATTAGHTPLHIAAR-EGHVETVLALLEKEASQACMTKKGF-- 147

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH AAK G      LLL   A+      +  T L VA    ++++V+
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.1 bits (235), Expect = 6e-21
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V+  R+L   G S      +G TPL +A    G   +   L+   AN N       G 
Sbjct: 223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQ-EGHAEMVALLLSKQANGNL--GNKSGL 279

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPLH  A+ G  P   +L+  G          +T L VA   G+I +V+
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.1 bits (235), Expect = 6e-21
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + +  L S+ A+    +K G TPL +     G + VA  LI+ G  ++A      G 
Sbjct: 256 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDA--TTRMGY 312

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH A+  G    V+ LL   A+   +    ++ L  A  +GH ++V  +  +
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.9 bits (180), Expect = 5e-14
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G++  ++ L    A +    K G +PL  A    G  ++   L++ GA+ N       G 
Sbjct: 322 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAA-QQGHTDIVTLLLKNGASPNE--VSSDGT 378

Query: 88  TPLHHAAKRGLEPTVRLL---LSCGANALVRNDDCHTALGVAR 127
           TPL  A + G      +L       +  LV +    +      
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD 421

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 94.4 bits (236), Expect = 9e-23
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G    +  L  +GA +  M++   TPL +A    G  ++ + L++  A+INA      G 
Sbjct: 50  GRSAVVEMLIMRGARINVMNRGDDTPLHLAAS-HGHRDIVQKLLQYKADINA--VNEHGN 106

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            PLH+A   G +     L++ GA   + N      +  A+      +    E  
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 75.9 bits (188), Expect = 3e-16
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGAN-INAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
             E    +   C   G     +  ++   N +N     G   +PLH A + G    V +L
Sbjct: 2   SPEFMDDIFTQCR-EGNAVAVRLWLDNTENDLNQGDDHGF--SPLHWACREGRSAVVEML 58

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +  GA   V N    T L +A   GH ++V+
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQ 89

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 9/104 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D ++ L    A +  +++ G  PL  AC   G   VA+ L+  GA ++       G 
Sbjct: 83  GHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQDQVAEDLVANGALVSI--CNKYGE 139

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
            P+  A     E         G N    N            KG 
Sbjct: 140 MPVDKAKAPLRELLRERAEKMGQNL---N---RIPYKDTFWKGT 177

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.8 bits (242), Expect = 1e-22
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +  ++ L   GA +  +  +  TPL  AC+ SG  +    L++ GA++          
Sbjct: 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACV-SGSWDCVNLLLQHGASVQP---ESDLA 158

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +P+H AA+RG    V  L++ G N   +     T L +A        V+
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.0 bits (240), Expect = 2e-22
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G V+ + +L + G +++       TPL +AC  +      K L+E GA++N  +      
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACE-NQQRACVKKLLESGADVNQGK---GQD 223

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           +PLH   +   E    LL+  GA+   +N +    + +   +  +  +
Sbjct: 224 SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 92.6 bits (231), Expect = 4e-21
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G   ++R L SQG ++  +  +  +PL  AC+  G ++  K L++ GA +N         
Sbjct: 70  GHQLSLRNLISQGWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQVNG--VTADWH 126

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL +A   G    V LLL  GA+    +D   + +  A  +GH+  V ++ ++
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAY 179

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 85.6 bits (213), Expect = 9e-19
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +  L   GAS++  + +  +P+  A    G +    +LI  G NI+        G
Sbjct: 136 GSWDCVNLLLQHGASVQ-PESDLASPIHEAAR-RGHVECVNSLIAYGGNIDH--KISHLG 191

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALV-RNDDCHTALGVARIKGHINVVRAIESH 141
           TPL+ A +      V+ LL  GA+  V +     + L          +   +   
Sbjct: 192 TPLYLACENQQRACVKKLLESGAD--VNQGKGQDSPLHAVVRTASEELACLLMDF 244

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.3 bits (207), Expect = 4e-18
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
                +P+  A +  G     + LI  G  +N         +PLH A   G    V++LL
Sbjct: 56  AVSDWSPMHEAAI-HGHQLSLRNLISQGWAVNI--ITADHVSPLHEACLGGHLSCVKILL 112

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
             GA       D HT L  A + G  + V 
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVN 142

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 15/119 (12%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-----GKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
                   L  +G+ +  MD +     G  P                L+      +A   
Sbjct: 6   HHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDF------PGIRLLSNPLMGDAVS- 58

Query: 83  GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                +P+H AA  G + ++R L+S G    +   D  + L  A + GH++ V+ +  H
Sbjct: 59  ---DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 66.7 bits (164), Expect = 2e-12
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                ++ L   GA +    K   +PL      +    +A  L++ GA+  A      G 
Sbjct: 201 QQRACVKKLLESGADVN-QGKGQDSPLHAVVR-TASEELACLLMDFGADTQA--KNAEGK 256

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
            P+              L   GA+
Sbjct: 257 RPVELVPPESPL-AQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
              +    L   GA  +  + EGK P+ +   +S L      L   GA++   +P
Sbjct: 233 ASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL--AQLFLEREGASLPKPKP 285

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 96.1 bits (240), Expect = 2e-22
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 2/114 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            + +           LE  + +G TPL VA +      + + L + GA++N       G 
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVI-HKDAEMVRLLRDAGADLNK-PEPTCGR 193

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH A +      + LLL  GA+   R     T LG A ++ +  + R + +H
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.0 bits (232), Expect = 3e-21
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
            D + +R LR  GA L   +   G+TPL +A   +   +V + L++ GA+  A   GGR 
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGADPTARMYGGR- 226

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
            TPL  A  R      RLL + GA       D  +    +      +  
Sbjct: 227 -TPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.5 bits (210), Expect = 2e-18
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 43  LEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN---INAYRPGGRGGTPLHHAAKRGLE 99
             ++ ++G T L +A +          L+   A    ++       G T LH AA  G  
Sbjct: 2   FGYVTEDGDTALHLAVI-HQHEPFLDFLLGFSAGHEYLDL--QNDLGQTALHLAAILGEA 58

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TV  L + GA  LV     HTAL +A           +   
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 13/124 (10%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN------ 78
            I G+   +  L + GA +   ++ G T L +AC        A  L++   +        
Sbjct: 53  AILGEASTVEKLYAAGAGVLVAERGGHTALHLACR-VRAHTCACVLLQPRPSHPRDASDT 111

Query: 79  -----AYRPGGRGGTPLHHAAKRGLEP-TVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
                          P    ++   E                 N D HT L VA I    
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171

Query: 133 NVVR 136
            +VR
Sbjct: 172 EMVR 175

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 3/80 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                +  L   GA        G+TPL  A +      +A+ L   GA       GG   
Sbjct: 203 QAASVLELLLKAGADPTARMYGGRTPLGSALL-RPNPILARLLRAHGAPEPE--DGGDKL 259

Query: 88  TPLHHAAKRGLEPTVRLLLS 107
           +P   +              
Sbjct: 260 SPCSSSGSDSDSDNRDEGDE 279

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 94.6 bits (236), Expect = 2e-22
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRG 86
           G++  +R        +  +DK G T L  AC   G  ++ + L  +    +N       G
Sbjct: 84  GNLSWLRECLDNRVGVNGLDKAGSTALYWAC-HGGHKDIVEMLFTQPNIELNQ--QNKLG 140

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            T LH AA +G    V+LLL+ GA   +RN +   A  +A      ++++  +  
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 28  GDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G  D +  L +Q    L   +K G T L  A    G  ++ + L+  GA  +        
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW-KGYADIVQLLLAKGARTDL--RNIEK 173

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
                 A        ++      A   + N + +     + ++ H
Sbjct: 174 KLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 72.7 bits (179), Expect = 8e-15
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 8/108 (7%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +      L  +   + ++     T               +T +     +          
Sbjct: 23  FEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK------GRTGLIPSNYVAE--QAESID 74

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
            PLH AAKRG    +R  L         +    TAL  A   GH ++V
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 8/90 (8%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
            K G+  +  A            L     +I          T       +G     R  L
Sbjct: 9   VKPGQVKVFRALYT-FEPRTPDELYIEEGDIIY--ITDMSDTNWWKGTSKG-----RTGL 60

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
                   + +     L  A  +G+++ +R
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLR 90

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 8/64 (12%), Positives = 14/64 (21%)

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144
            G   +  A       T   L     + +   D   T       KG   ++ +       
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70

Query: 145 FCGW 148
               
Sbjct: 71  ESID 74

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 94.4 bits (236), Expect = 3e-22
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             VD ++ L S+G+ +   D E    L  A   SG +++A+ L+    +++A      G 
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAF-SGCVDIAEILLAAKCDLHA--VNIHGD 178

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +PLH AA+      V L LS  ++  ++N +  T L  A +   +     +   
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.5 bits (218), Expect = 7e-20
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
             ++A++ L   GA ++  D EG T L +A    G   V + L+  G  ++N    GG  
Sbjct: 55  NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGW- 112

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TP+  A +      V+LLLS G++  +R+++ +  L  A   G +++   + + 
Sbjct: 113 -TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 86.3 bits (215), Expect = 2e-19
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD    L   GA+++   ++ +TPL+ A   +  +   K LI+ GA ++       G 
Sbjct: 22  GHVDICHMLVQAGANIDTCSEDQRTPLMEAAE-NNHLEAVKYLIKAGALVDP--KDAEGS 78

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH AAK+G    V+ LLS G    N   ++D   T +  A    H+++V+ + S 
Sbjct: 79  TCLHLAAKKGHYEVVQYLLSNGQMDVNC--QDDGGWTPMIWATEYKHVDLVKLLLSK 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.1 bits (204), Expect = 7e-18
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
            +  ++PL  A   +G +++   L++ GANI+         TPL  AA+      V+ L+
Sbjct: 8   HQNKRSPLHAAAE-AGHVDICHMLVQAGANIDT--CSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA    ++ +  T L +A  KGH  VV+ + S+
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.4 bits (179), Expect = 1e-14
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD    L +    L  ++  G +PL +A       +     +   +++        G 
Sbjct: 155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR-ENRYDCVVLFLSRDSDVTL--KNKEGE 211

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANA 112
           TPL  A+      +   +     ++
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.0 bits (139), Expect = 2e-09
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 75  ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
            N        R  +PLH AA+ G      +L+  GAN    ++D  T L  A    H+  
Sbjct: 2   MNFKMEHQNKR--SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA 59

Query: 135 VRAIESH 141
           V+ +   
Sbjct: 60  VKYLIKA 66

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            D  A+  L  +   ++ +D+ G+T L+      G     + L E GA+++  R    G 
Sbjct: 56  ADEQALSQL-LEDRDVDAVDENGRTALLFVAG-LGSDKCVRLLAEAGADLDH-RDMRGGL 112

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH AA       V  L+  GA+  V ++   TAL +AR              
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G    +R L   GA L+  D   G T L +A        V + L+ELGA+I       RG
Sbjct: 88  GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG-YVRPEVVEALVELGADIEV--EDERG 144

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            T L  A +          +  G        +    +   ++  +  V   +E  
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRI---GLEKVINVLEGQVFEYAEVDEIVEKR 196

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 15/114 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+V+ I   R+          EG    ++   D G          + A++ +        
Sbjct: 1   GEVNKIIGSRT--------AGEGAMEYLIEWKD-GHSPSWVPSSYIAADVVS-----EYE 46

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TP   AA++  E  +  LL    +    +++  TAL      G    VR +   
Sbjct: 47  TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 99

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 23/125 (18%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
              + + AL   GA +E  D+ G T L +A  +          ++ G  I          
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAR-EILKTTPKGNPMQFGRRIGLEKVINVLE 180

Query: 80  -----YRPG-------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
                Y          G+G    +    +       +     A  + ++ +    L  A 
Sbjct: 181 GQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAV 238

Query: 128 IKGHI 132
            +  I
Sbjct: 239 AESVI 243

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 93.7 bits (234), Expect = 2e-21
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD + +  L  +GA + + + +G T L  AC+D   +++ K L+E GANIN   P   G 
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQ--PDNEGW 107

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
            PLH AA  G       L+S GA+    N +  T L +A  +    ++
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.0 bits (214), Expect = 9e-19
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 31  DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90
           DA + L S   +     K G T L VA    G   V K LI+   ++N     G   TPL
Sbjct: 180 DARQWLNSGHINDVRHAKSGGTALHVAAA-KGYTEVLKLLIQARYDVNIKDYDGW--TPL 236

Query: 91  HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA--RIKGHINVVRA 137
           H AA  G E   R+L+    +    N    TA  VA   I G++  ++ 
Sbjct: 237 HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 9/121 (7%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+Q  I  +VD ++ L   GA++   D EG  PL  A    G +++A+ LI  GA++ A 
Sbjct: 77  LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS-CGYLDIAEYLISQGAHVGA- 134

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                G TPL  A +  +E  ++  ++          D   A          +  + + S
Sbjct: 135 -VNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRDARQWLNS 187

Query: 141 H 141
            
Sbjct: 188 G 188

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.5 bits (192), Expect = 6e-16
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 31  DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90
             +     +    +    +G   L  AC  SG       L+E GA+IN     G   T L
Sbjct: 22  TDLEPPVVKRKKTKVKFDDGAVFLA-ACS-SGDTEEVLRLLERGADINYANVDGL--TAL 77

Query: 91  HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           H A        V+ L+  GAN    +++    L  A   G++++  
Sbjct: 78  HQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.4 bits (189), Expect = 2e-15
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 28/140 (20%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMD--------------------------S 61
           G +D    L SQGA +  ++ EG TPL +A  +                           
Sbjct: 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176

Query: 62  GLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT 121
            L +  + L     N   +   G   T LH AA +G    ++LL+    +  +++ D  T
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGG--TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT 234

Query: 122 ALGVARIKGHINVVRAIESH 141
            L  A   G     R +  +
Sbjct: 235 PLHAAAHWGKEEACRILVEN 254

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           D + K    +     G     +  +               G     A   G    V  LL
Sbjct: 5   DAKQKRNEQLKRW-IGSETDLEPPVVKRKKTKV---KFDDGAVFLAACSSGDTEEVLRLL 60

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+    N D  TAL  A I  ++++V+ +  +
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.9 bits (154), Expect = 5e-11
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L      +   D +G TPL  A    G     + L+E   ++ A    G+  
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH-WGKEEACRILVENLCDMEAVNKVGQ-- 266

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
           T    A +  L     L       
Sbjct: 267 TAFDVADEDILGYLEELQKKQNLL 290

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 93.4 bits (233), Expect = 2e-21
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
                 +++           D  G +    A      + +  TL+  GA  N        
Sbjct: 9   TWKSKQLKSF-LSSKDTFKADVHGHSASYYAIA-DNNVRLVCTLLNAGALKNLLE----N 62

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
             PLH AA       V++LL  G +    +D  +TAL  A   G++  V+
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 88.7 bits (221), Expect = 8e-20
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +V  +  L + GA       E + PL  A        + K L+  G + +      +G 
Sbjct: 42  NNVRLVCTLLNAGALKN--LLENEFPLHQAAT-LEDTKIVKILLFSGLDDSQ--FDDKGN 96

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVR-NDDCHTALGVARIKGHINVVRAIESH 141
           T L++A   G   TV+L +      +        T+   A +   +++V    S 
Sbjct: 97  TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 80.7 bits (200), Expect = 4e-17
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEG-KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G++  ++    +   L +  K G KT    A M    +++    +    +          
Sbjct: 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM-LNDVSIVSYFLSEIPSTFD---LAIL 161

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT-ALGVARIKGHINVVR 136
            + +H   K G    + LLL    +    N       + +A     I +++
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.3 bits (194), Expect = 3e-16
 Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 12/115 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            DV  +    S+  S         + + +    +G +++   L++   + N         
Sbjct: 140 NDVSIVSYFLSEIPSTF-DLAILLSCIHITIK-NGHVDMMILLLDYMTSTNT--NNSLLF 195

Query: 88  TP-LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            P +  A        ++ L     N        ++A     +     + + I   
Sbjct: 196 IPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMIIEK 243

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 13/107 (12%), Positives = 27/107 (25%), Gaps = 9/107 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G VD +  L     S    +     P I   +D+  I + + L +   NI          
Sbjct: 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------- 222

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
           +              ++++         +      +        I  
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIIS 269

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.7 bits (229), Expect = 3e-21
 Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
              + ++ L  +GA ++ +D K G++PLI A  ++  +++ + L++ GAN+NA      G
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMVQLLLQHGANVNA--QMYSG 183

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            + LH A+ RGL P VR L+  GA++ ++N    T L VAR +  I+++R   + 
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 87.5 bits (218), Expect = 8e-20
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           +   +  G  L+  +   +TPL +A + + L +V + L+  GA+  A    G+  T  H 
Sbjct: 29  VNLFQQGGRELDIYNNLRQTPLHLAVI-TTLPSVVRLLVTAGASPMALDRHGQ--TAAHL 85

Query: 93  AAKRGLEPTVRLLLSCGANALV----RNDDCHTALGVARIKGHINVVR 136
           A +      +R LL   A   +    RN D  TAL VA        V+
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.4 bits (210), Expect = 1e-18
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIEL----GANINAYRPGGRGGTPLHHAAKRGLEPTV 102
           D++G TPL +A +  G +     L+ L    G  ++ Y       TPLH A    L   V
Sbjct: 6   DEDGDTPLHIAVV-QGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVV 62

Query: 103 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           RLL++ GA+ +  +    TA  +A        +RA+   
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 101

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.7 bits (203), Expect = 7e-18
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINAYRPG 83
                +R L + GAS   +D+ G+T   +AC +       + L++  A    ++ A    
Sbjct: 57  TLPSVVRLLVTAGASPMALDRHGQTAAHLAC-EHRSPTCLRALLDSAAPGTLDLEARNYD 115

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESH 141
           G   T LH A     + TV+LLL  GA+    +     + L  A     +++V+ +  H
Sbjct: 116 GL--TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.0 bits (201), Expect = 2e-17
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             +  ++ L   GA++      G + L  A    GL+ + +TL+  GA+ +         
Sbjct: 161 NSLSMVQLLLQHGANVNAQMYSGSSALHSASG-RGLLPLVRTLVRSGADSSL--KNCHND 217

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
           TPL  A  R +   +R   +  A+
Sbjct: 218 TPLMVARSRRVIDILRGKATRPAS 241

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.7 bits (224), Expect = 3e-21
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ +  L   GA +  +D  G TPL +A    G + + + L++ GA++NA    G   
Sbjct: 58  GHLEIVEVLLKNGADVNAVDHAGMTPLRLAA-LFGHLEIVEVLLKNGADVNANDMEGH-- 114

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA  G    V +LL  GA+   ++    TA  ++   G+ ++   ++  
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.0 bits (222), Expect = 5e-21
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L + GA +   D  G TPL +A   +G + + + L++ GA++NA      G 
Sbjct: 25  GRDDEVRILMANGADVNAEDASGWTPLHLAAF-NGHLEIVEVLLKNGADVNA--VDHAGM 81

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL  AA  G    V +LL  GA+    + + HT L +A + GH+ +V  +  +
Sbjct: 82  TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 74.3 bits (184), Expect = 6e-16
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
             +    L+ A   +G  +  + L+  GA++NA      G TPLH AA  G    V +LL
Sbjct: 11  GSDLGKKLLEAAR-AGRDDEVRILMANGADVNA--EDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+    +    T L +A + GH+ +V  +  +
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.9 bits (144), Expect = 1e-10
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           G++ + +  G   G  L  AA+ G +  VR+L++ GA+    +    T L +A   GH+ 
Sbjct: 3   GSHHHHHH-GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 134 VVRAIESH 141
           +V  +  +
Sbjct: 62  IVEVLLKN 69

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 90.7 bits (226), Expect = 7e-21
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 28  GDVDAIRALRSQGASLEWM------DKEGKTPLIVACMDSGLINVAKTLIELGANINAYR 81
           G + ++  L     +          +  G T L +A +  G + + + L+ LGA++NA +
Sbjct: 89  GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI-HGYLGIVELLVSLGADVNA-Q 146

Query: 82  PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
               G T LH A        V LLL CGA+        ++   +   +    + + +   
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.2 bits (217), Expect = 9e-20
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           ++ IR ++   A L + +   +TPL +A + +    +A+ L+  G +        RG TP
Sbjct: 25  MEVIRQVKGDLAFLNFQNNLQQTPLHLAVI-TNQPEIAEALLGAGCDPEL--RDFRGNTP 81

Query: 90  LHHAAKRGLEPTVRLLLSCGANALV------RNDDCHTALGVARIKGHINVVR 136
           LH A ++G   +V +L        +       N + HT L +A I G++ +V 
Sbjct: 82  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.8 bits (203), Expect = 8e-18
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 4/112 (3%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPG 83
            I G +  +  L S GA +   +   G+T L +A  D    ++   L++ GA++N     
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV-DLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           G   +P      R      + L       L    +                 
Sbjct: 184 GY--SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 47  DKEGKTPLIVACM---DSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVR 103
            ++G + L +A +    +  + V + +    A +N      +  TPLH A          
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ--TPLHLAVITNQPEIAE 62

Query: 104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            LL  G +  +R+   +T L +A  +G +  V  +   
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.3 bits (199), Expect = 3e-17
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR--- 81
           VI    +   AL   G   E  D  G TPL +AC   G +     L +     + +    
Sbjct: 53  VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILK 111

Query: 82  -PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR-NDDCHTALGVARIKGHINVVRAIE 139
                G T LH A+  G    V LL+S GA+   +   +  TAL +A    + ++V  + 
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171

Query: 140 SH 141
             
Sbjct: 172 KC 173

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 89.4 bits (223), Expect = 7e-21
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                   L+     ++ +D EG TPL +A   +  I +AK LI+ GA+IN         
Sbjct: 17  DTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDIEIAKALIDRGADINL--QNSISD 73

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVR 136
           +P  +A  +G    +  +L      L   N     AL  A  KGHI+ V+
Sbjct: 74  SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.1 bits (204), Expect = 3e-18
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 28  GDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGR 85
           G  + +  +       L   ++ G   LI A    G I+  K L+E G  +I+       
Sbjct: 83  GRTEILAYMLKHATPDLNKHNRYGGNALIPAAE-KGHIDNVKLLLEDGREDIDF--QNDF 139

Query: 86  GGTPLHHAA-----KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           G T L  A       +  +  V+LL+  GA+  ++++   TA+  A  KG+  + + +  
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

Query: 141 H 141
           +
Sbjct: 200 Y 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.3 bits (202), Expect = 5e-18
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
             E    L  A        V + L +    ++       G TPL+ A         + L+
Sbjct: 3   TYEVGALLEAANQR-DTKKVKEILQDTTYQVDE--VDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             GA+  ++N    +    A  +G   ++  +  H
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 89.0 bits (222), Expect = 9e-21
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
           S+G+++   D  GKTPL+ + +  G   ++  L+E GAN+N     G   TPL  A+K G
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSII-FGYSEMSYFLLEHGANVNDRNLEGE--TPLIVASKYG 145

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
               V+ LL  GA+   R+    TA   ARI G   V++     
Sbjct: 146 RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 86.7 bits (216), Expect = 6e-20
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  +AI  L      LE  D EG T LI A   +  + +A+ L+  G+N+N     G+  
Sbjct: 46  GMENAIDKLVENFDKLEDKDIEGSTALIWAVK-NNRLGIAEKLLSKGSNVNTKDFSGK-- 102

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           TPL  +   G       LL  GAN   RN +  T L VA   G   +V+
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 81.7 bits (203), Expect = 3e-18
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 32  AIRALRSQGASL--EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
                 +Q       + D   +TPL+VACM  G+ N    L+E    +        G T 
Sbjct: 15  KDEKSINQNLDFLRNYRDSYNRTPLMVACM-LGMENAIDKLVENFDKLED--KDIEGSTA 71

Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           L  A K         LLS G+N   ++    T L  + I G+  + 
Sbjct: 72  LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
           G+    MDK G+    +           +  I    +           TPL  A   G+E
Sbjct: 1   GSH---MDKNGEIVEKIK---------DEKSINQNLDFLRNYRDSYNRTPLMVACMLGME 48

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             +  L+        ++ +  TAL  A     + +   + S 
Sbjct: 49  NAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 88.7 bits (221), Expect = 9e-21
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            D  A+  L  +   ++ +D+ G+T L+      G     + L E GA+++  R    G 
Sbjct: 55  ADEQALSQL-LEDRDVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDH-RDMRGGL 111

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T LH AA       V  L+  GA+  V ++   TAL +AR              
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 75.6 bits (187), Expect = 4e-16
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 39  QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL 98
                     EG    ++   D G          + A++ +        TP   AA++  
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKD-GHSPSWVPSSYIAADVVS-----EYETPWWTAARKAD 56

Query: 99  EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           E  +  LL    +    +++  TAL      G    VR +   
Sbjct: 57  EQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 98

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.0 bits (175), Expect = 2e-14
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           G    +R L   GA L+  D + G T L +A        V + L+ELGA+I      G  
Sbjct: 87  GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG-YVRPEVVEALVELGADIEVEDERGL- 144

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGAN 111
            T L  A +          +  G  
Sbjct: 145 -TALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 4/65 (6%)

Query: 72  ELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
           E+   I + R  G G        K G  P+        A+      +  T    A  K  
Sbjct: 1   EVNKIIGS-RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKAD 56

Query: 132 INVVR 136
              + 
Sbjct: 57  EQALS 61

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 90.2 bits (225), Expect = 1e-20
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                +  L +  A +  +D  GK+ L  A      ++ A  L++ GAN +      R  
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAA-VNNVDAAVVLLKNGANKDM--QNNREE 191

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL  AA+ G   T ++LL   AN  + +        +A+ + H ++VR ++  
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 83.7 bits (208), Expect = 2e-18
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
              DA + L    A     D  G+TPL  A   +    V + LI   A +++A    G  
Sbjct: 68  SRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGT- 125

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPL  AA+  +E  +  L++  A+    +D   +AL  A    +++    +  +
Sbjct: 126 -TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.5 bits (192), Expect = 3e-16
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +VDA   L   GA+ +  +   +TPL +A  + G    AK L++  AN +         
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDI--TDHMDR 224

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN 111
            P   A +R     VRLL     +
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.4 bits (184), Expect = 3e-15
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 47  DKEGKTPLIVACM------------DSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA 94
             +G TPL++A              +     V    I  GA+++       G T LH AA
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAA 65

Query: 95  KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           +       + LL   A+A ++++   T L  A       V +
Sbjct: 66  RYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78
           G  +  + L    A+ +  D   + P  +A  +    ++ + L     + +
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQ-ERMHHDIVRLLDLEHHHHH 250

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 92.2 bits (230), Expect = 1e-20
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V  ++ L   GA +   DK G  PL  AC   G   V + L++ GA +NA        
Sbjct: 69  NRVRIVQLLLQHGADVHAKDKGGLVPLHNACS-YGHYEVTELLLKHGACVNA--MDLWQF 125

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           TPLH AA +       LLLS GA+  + N    +A+ +A        +
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 91.4 bits (228), Expect = 3e-20
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 21  LYQWVIAGDVDAIRA-LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           L +   +G+ + + A L     +    D    TPL +A      + + + L++ GA+++A
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG-YNRVRIVQLLLQHGADVHA 86

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
              GG    PLH+A   G      LLL  GA     +    T L  A  K  + V  
Sbjct: 87  KDKGGL--VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 88.7 bits (221), Expect = 2e-19
 Identities = 28/101 (27%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
           L    A      +  K  L+ A        +   L  L  N +A    GR  TPLH AA 
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA--SDGRKSTPLHLAAG 67

Query: 96  RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                 V+LLL  GA+   ++      L  A   GH  V  
Sbjct: 68  YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.8 bits (216), Expect = 8e-19
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                   L  +GA++   +K+  TPL VA       +V + L + GA +NA      G 
Sbjct: 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAE-RAHNDVMEVLHKHGAKMNA--LDSLGQ 281

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           T LH AA  G   T RLLLS G++  + +    TA  + 
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 84.5 bits (210), Expect = 5e-18
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACM--DSGLINVAKTLIELGANINAYRPGGR 85
            D+  ++   +         +  +T L  A          VA+ L+  GAN+N       
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE--KNKD 246

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             TPLH AA+R     + +L   GA     +    TAL  A + GH+   R + S+
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
              D +  L   GA +  +D  G+T L  A + +G +   + L+  G++ +      +G 
Sbjct: 258 AHNDVMEVLHKHGAKMNALDSLGQTALHRAAL-AGHLQTCRLLLSYGSDPSI--ISLQGF 314

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 130
           T      +      V+ +LS      +R  D    L  A   G
Sbjct: 315 TAAQMGNE-----AVQQILSESTP--MRTSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.6 bits (161), Expect = 8e-12
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 65  NVAKTLIELGANINAYRPGGRGGTPLHHAAKRG-LEPTVRLLLSCGANALVRNDDCHTAL 123
             A  L +  A       G      L  AA+ G  E  + LL     N    +    T L
Sbjct: 5   KSALDLADPSAKAVL--TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62

Query: 124 GVARIKGHINVVRAIESH 141
            +A     + +V+ +  H
Sbjct: 63  HLAAGYNRVRIVQLLLQH 80

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.5 bits (153), Expect = 8e-11
 Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 15/112 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V+    L S GA    ++  GK+ + +A     L        +              G
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT-PELRERLTYEFK--------------G 179

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
             L  AA+      V+  L+       +     TAL  A    H    +  E
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.4 bits (218), Expect = 2e-20
 Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           GD++ + +L     ++   +  G+T L V  + +    +A+ L+  GAN +     G   
Sbjct: 16  GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN--PEIARRLLLRGANPDLKDRTGF-- 71

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             +H AA+ G   T++ LL   A+  + +++ +  L +A  +GH+ VV  +  H
Sbjct: 72  AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+ +  R L  +GA+ +  D+ G   +  A    G ++  +TL+E  A++N     G   
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIEDNEGN-- 104

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 141
            PLH AAK G    V  L+   A       RN    TA  +AR+ G   VV  ++++
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGH--RNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           M +     L  A    G +    +L++   N+NA    G G T L        E   R L
Sbjct: 1   MAEPWGNELASAAA-RGDLEQLTSLLQNNVNVNA--QNGFGRTALQVMKLGNPE-IARRL 56

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           L  GAN  +++      +  A   G ++ ++ +   
Sbjct: 57  LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF 92

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.5 bits (161), Expect = 7e-13
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
           G +D ++ L    A +   D EG  PL +A  + G + V + L++  A N+       +G
Sbjct: 81  GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGH--RNHKG 137

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGA 110
            T    A   G    V L+ + GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G       L   G S +   K  +TPL +A    G  N+ + L++ GA++NA        
Sbjct: 45  GHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKM-- 101

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
           T LH A +   +  V LL+  GA+   ++  C TA  ++   G+ ++  
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 83.2 bits (207), Expect = 4e-19
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L + GA     D  G +PL +A    G  +  + L+  G + +A     R  
Sbjct: 13  GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQ-YGHFSTTEVLLRAGVSRDARTKVDR-- 68

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA  G    V +LL  GA+   ++    TAL  A    H  VV  +  +
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.5 bits (187), Expect = 2e-16
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 49  EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC 108
           +    L+ A   +G  +  + L+  GA          G +PLH AA+ G   T  +LL  
Sbjct: 1   DLGKKLLEAAR-AGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 109 GANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G +   R     T L +A  +GH N+V  +  H
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 62.8 bits (154), Expect = 6e-12
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + +  L   GA +   D    T L  A        V + LI+ GA+++      +  
Sbjct: 78  GHANIVEVLLKHGADVNAKDMLKMTALHWATE-HNHQEVVELLIKYGADVHTQSKFCK-- 134

Query: 88  TPLHHAAKRGLEPTVRLL 105
           T    +   G E    +L
Sbjct: 135 TAFDISIDNGNEDLAEIL 152

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 85.9 bits (214), Expect = 3e-20
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L + GA +   D+ G TPL +A    G + + + L++ GA++NA    G   
Sbjct: 25  GQDDEVRILMANGADVNAKDEYGLTPLYLATA-HGHLEIVEVLLKNGADVNAVDAIGF-- 81

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA  G      +LL  GA+   ++    TA  ++   G+ ++   ++  
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 56.6 bits (138), Expect = 5e-10
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 67  AKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
           +      G+++            L  AA+ G +  VR+L++ GA+   +++   T L +A
Sbjct: 4   SHHHHHHGSDLG---------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA 54

Query: 127 RIKGHINVVRAIESH 141
              GH+ +V  +  +
Sbjct: 55  TAHGHLEIVEVLLKN 69

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 84.5 bits (210), Expect = 4e-20
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                   L  +G+ +     +    L+ A    G  +  + L+  GA++ A    G   
Sbjct: 5   HHHHHSSGLVPRGSHM---GSDLGKKLLEAARA-GQDDEVRILMANGADVAAKDKNGS-- 58

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
           TPLH AA+ G    V+LLL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 59  TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 72.6 bits (179), Expect = 6e-16
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
            +  L+  G+++ +       G  L  AA+ G +  VR+L++ GA+   ++ +  T L +
Sbjct: 9   HSSGLVPRGSHMGS-----DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHL 63

Query: 126 ARIKGHINVVRAIESH 141
           A   GH+ VV+ +   
Sbjct: 64  AARNGHLEVVKLLLEA 79

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 93  AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            +          L+  G++      D    L  A   G  + VR + ++
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMAN 46

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 88.1 bits (219), Expect = 5e-20
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 2/111 (1%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPG 83
           V AG  + ++ L   G ++   D +G TPL  A      + V K L+E GA + A     
Sbjct: 78  VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS-CNNVQVCKFLVESGAAVFAMTYSD 136

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
            +         + G     + L        + N     AL     +    +
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.4 bits (212), Expect = 4e-19
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+ D ++ +  +       + EG T L  A    G   + K L++ G N+NA    G   
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAADSDGW-- 104

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA--NALVRND-DCHTALGVARIKGHINVVRAIESH 141
           TPLH AA        + L+  GA   A+  +D            +G+    + +   
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           +  G+  L      + L       I  G  +            L  ++  G    V+ ++
Sbjct: 2   EITGQVSLPPGKR-TNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRII 57

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
               +  + ND+  TAL  A   GH  +V+
Sbjct: 58  YEVDDPSLPNDEGITALHNAVCAGHTEIVK 87

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L                + G  +++ +      L+ + +  G  ++ + +I    + +  
Sbjct: 9   LPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSL-EGEFDLVQRIIYEVDDPSL- 65

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
            P   G T LH+A   G    V+ L+  G N    + D  T L  A    ++ V + +  
Sbjct: 66  -PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 141 H 141
            
Sbjct: 125 S 125

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 87.9 bits (219), Expect = 5e-20
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
                +  L +  A +  +D  GK+ L  A      ++ A  L++ GAN +      R  
Sbjct: 103 AVEGMLEDLINSHADVNAVDDLGKSALHWAAA-VNNVDAAVVLLKNGANKDM--QNNREE 159

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPL  AA+ G   T ++LL   AN  + +        +A+ + H ++VR ++ +
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 84.4 bits (210), Expect = 8e-19
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 27  AGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
                 I     QGASL    D+ G+T L +A       + AK L+E  A+ N       
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAAR-YSRSDAAKRLLEASADANI--QDNM 57

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G TPLH A     +   ++L+   A   +A  R  D  T L +A       ++  + + 
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINS 114

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 82.5 bits (205), Expect = 3e-18
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRG 86
              DA + L    A     D  G+TPL  A   +    V + LI   A +++A    G  
Sbjct: 36  SRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGT- 93

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            TPL  AA+  +E  +  L++  A+    +D   +AL  A    +++    +  +
Sbjct: 94  -TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.1 bits (186), Expect = 1e-15
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
            +VDA   L   GA+ +  +   +TPL +A  + G    AK L++  AN +         
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDI--TDHMDR 192

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH 120
            P   A +R     VRLL        VR+   H
Sbjct: 193 LPRDIAQERMHHDIVRLLDEYNL---VRSPQLH 222

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 85.5 bits (213), Expect = 8e-20
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
             V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         
Sbjct: 53  NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGAVVNV--ADLWKF 109

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH AA +G     +LLL  GA+   +N D +T L + +  G  ++   +   
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 76.3 bits (189), Expect = 1e-16
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 28  GDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           GDV+ ++ L + Q  +   ++    TPL  A      ++V + L++ GA+++A   GG  
Sbjct: 19  GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAG-YNRVSVVEYLLQHGADVHAKDKGGL- 76

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             PLH+A   G      LL+  GA   V +    T L  A  KG   + + +  H
Sbjct: 77  -VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.7 bits (185), Expect = 5e-16
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
           + E    L+ A   +G +   K L  +   N       GR  TPLH AA       V  L
Sbjct: 5   NSEADRQLLEAAK-AGDVETVKKLCTVQSVNCRD--IEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 106 LSCGANALVRNDDCHTALGVARIKGHINVV 135
           L  GA+   ++      L  A   GH  V 
Sbjct: 62  LQHGADVHAKDKGGLVPLHNACSYGHYEVA 91

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 64.3 bits (158), Expect = 2e-12
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
             GA +   D    TPL  A    G   + K L++ GA+         G TPL       
Sbjct: 96  KHGAVVNVADLWKFTPLHEAAA-KGKYEICKLLLQHGADPTK--KNRDGNTPLDLVKDGD 152

Query: 98  LEPTVRLLLSCGA 110
            +    LL    A
Sbjct: 153 TD-IQDLLRGDAA 164

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 85.9 bits (213), Expect = 9e-20
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD-----SGLINVAKTLIELGANINAY 80
                     L ++GA ++   KEG T             +G   + K  +E GA+I A 
Sbjct: 51  DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA- 109

Query: 81  RPGGRGGTPLHHAAKRG------LEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHIN 133
                    +             + P  +L+    G   L+++    TAL   +      
Sbjct: 110 -LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

Query: 134 VVRAIESH 141
            ++ +E +
Sbjct: 169 ALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-----DSGLINVAKTLI-ELGANINA 79
           I G  +  +    +GA +  + K  K  +          ++ +I + K +  + G  +  
Sbjct: 90  ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD 118
               G   T L    +      ++++        ++ + 
Sbjct: 150 KDKWGL--TALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 60.1 bits (146), Expect = 9e-11
 Identities = 13/97 (13%), Positives = 23/97 (23%), Gaps = 10/97 (10%)

Query: 48  KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA-----KRGLEPTV 102
                 +  A M  G       L E G             + + +               
Sbjct: 4   MSEYRTVSAAAM-LGTYEDFLELFEKGYEDKESV----LKSNILYDVLRNNNDEARYKIS 58

Query: 103 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
             L++ GA+   R  +  T        G  ++    E
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTE 95

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 89.5 bits (223), Expect = 1e-19
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 8/117 (6%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-----GANINAYRPGG 84
           ++ I+ L   GAS    DK  +TPL+ A  +         +++         ++      
Sbjct: 153 LEMIKILVQLGASPTAKDKADETPLMRAM-EFRNREALDLMMDTVPSKSSLRLDY--ANK 209

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +G + LH A     E      +  G +  + +++    L ++     + + + +   
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.8 bits (216), Expect = 9e-19
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 11/110 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  D +R L   G S    ++ G T L +AC   G ++ AK L  +G   + +     G 
Sbjct: 31  GQTDEVRRLIETGVSPTIQNRFGCTALHLACK-FGCVDTAKYLASVGEVHSLWH----GQ 85

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 137
            P+H A        V  L+                  +        V   
Sbjct: 86  KPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNEI 129

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.5 bits (210), Expect = 5e-18
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
           D E    + VA    G  +  + LIE G +         G T LH A K G   T + L 
Sbjct: 17  DDENMEKIHVAAR-KGQTDEVRRLIETGVSPTI--QNRFGCTALHLACKFGCVDTAKYLA 73

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           S G             + +A +    ++V A+   
Sbjct: 74  SVGEV--HSLWHGQKPIHLAVMANKTDLVVALVEG 106

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.0 bits (206), Expect = 2e-17
 Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 12/125 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
              D        G  +   D E   PL ++   + ++ + K L++              G
Sbjct: 222 NWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV-RAAMVLLTKELLQKTDVFLIQACPYHNG 280

Query: 88  -----------TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                        +  AA    +  ++LL       +   +         + K    V R
Sbjct: 281 TTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKR 340

Query: 137 AIESH 141
              + 
Sbjct: 341 MKLAP 345

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 8/101 (7%)

Query: 47  DKEGKTPLIVACMD-SGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLL 105
             +G+T L          + + K L++LGA+  A        TPL  A +      + L+
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA--KDKADETPLMRAMEFRNREALDLM 192

Query: 106 LSC-----GANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +              N   ++ L  A +    +V       
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.7 bits (182), Expect = 2e-14
 Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 3/99 (3%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
                      G ++          +  A  D     V + L E    +        G  
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAA-DPSKQEVLQLLQEKLDEVVR--SLNTGAG 325

Query: 89  PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
                 K+      R+ L+  A    R+     +  V++
Sbjct: 326 GAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 70  LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 129
                 N             +H AA++G    VR L+  G +  ++N    TAL +A   
Sbjct: 6   TDFPKLNRIK--SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 130 GHINVVR 136
           G ++  +
Sbjct: 64  GCVDTAK 70

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.5 bits (218), Expect = 2e-19
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINAYRPG 83
           V   DVD ++ L   GA++ + ++E G TPL  A       ++ + L+  GA+       
Sbjct: 13  VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ-MSREDIVELLLRHGADPVL--RK 69

Query: 84  GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
             G TP   AA  G    ++L LS GA+    +    TA   A + G +  ++
Sbjct: 70  KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.5 bits (218), Expect = 2e-19
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
              D +  L   GA      K G TP ++A + +G + + K  +  GA++N     G   
Sbjct: 50  SREDIVELLLRHGADPVLRKKNGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGF-- 106

Query: 88  TPLHHAAKRGLEPTVRLLLSCGAN----------ALVRNDDCHTALGVARIKGHINVVR 136
           T    AA  G    ++ L   GAN                   TAL  A  KGH+ V++
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
             E    LI A   +  +++ + L+E GAN+N  +    G TPLH+A +   E  V LLL
Sbjct: 2   AVEDNHLLIKAVQ-NEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVR 136
             GA+ ++R  +  T   +A I G + +++
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLK 89

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.5 bits (205), Expect = 8e-18
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACM---DSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           L   GA +   D  G+  LI A +   DS +  +   L++ GA++N    G RG TPL  
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--RGERGKTPLIL 225

Query: 93  AAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           A ++     V+ LL          + D  TAL +A       +   +   
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.0 bits (201), Expect = 3e-17
 Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)

Query: 28  GDVDAIRALRSQGA----------SLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGAN 76
           G V A++ L  +GA            E + K G T L+ A    G + V K L+ E+GA+
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGHVEVLKILLDEMGAD 174

Query: 77  INAYRPGGRGGTPLHHAAKRG----LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132
           +NA      G   L HA        +E    LLL  GA+  VR +   T L +A  K H+
Sbjct: 175 VNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232

Query: 133 NVVRA-IESH 141
            +V+  +E  
Sbjct: 233 GLVQRLLEQE 242

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 6e-14
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE-LGANINAYRPGGRGGTPLH 91
              L   GA +    + GKTPLI+A  +   + + + L+E     IN       G T L 
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAV-EKKHLGLVQRLLEQEHIEIND--TDSDGKTALL 258

Query: 92  HAAKRGLEPTVRLLLSCGAN 111
            A +  L+    LL   GA+
Sbjct: 259 LAVELKLKKIAELLCKRGAS 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 8/68 (11%)

Query: 75  ANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC-HTALGVARIKGHIN 133
           A +            L  A +      V+ LL  GAN   + ++   T L  A      +
Sbjct: 1   AAVE-------DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED 53

Query: 134 VVRAIESH 141
           +V  +  H
Sbjct: 54  IVELLLRH 61

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 28  GDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
             +  ++ L  Q    +   D +GKT L++A     L  +A+ L + GA+ + 
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDC 281

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+++ ++    +       ++EG T L  A       ++   LI  GAN+N+    G   
Sbjct: 32  GELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSPDSHGW-- 88

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRND-DCHTALGVARI--KGHINVVRAIESH 141
           TPLH AA          L+  GA        D  TA        +G+ +    +   
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 5/110 (4%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVA-CMDSGLINVAKTLIELGANINAYRPGGR 85
            D     AL   GA++      +G T          G  + A  L ++  ++     G  
Sbjct: 98  NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV 157

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
               L   +    +  +          L R+    T    A + G    V
Sbjct: 158 --YALWDYSAEFGD-ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 79.2 bits (196), Expect = 6e-17
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 33  IRALRSQGASLEWMDKE---GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           +R++  +  S     +        L+ A + +G + V +  ++   + +   P   G T 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAAL-TGELEVVQQAVKEMNDPSQ--PNEEGITA 57

Query: 90  LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           LH+A        V  L++ GAN    +    T L  A       +  A+  H
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH 109

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  +   +   +  L + GA++   D  G TPL  A        +   L++ GA I A 
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS-CNDTVICMALVQHGAAIFA- 115

Query: 81  RPGGRGGTPLHHAA--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 134
                G T        + G       L     +  + N     AL     +    +
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL 171

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.4 bits (205), Expect = 3e-19
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
           G       K+G TPL  A   +G     K L+  GA++NA    G   TPLH AAK G  
Sbjct: 1   GHMWG--SKDGNTPLHNAA-KNGHAEEVKKLLSKGADVNARSKDGN--TPLHLAAKNGHA 55

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
             V+LLL+ GA+   R+ D +T   +A+  GH  +V+
Sbjct: 56  EIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVK 92

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 81.7 bits (203), Expect = 4e-19
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L S+GA +    K+G TPL +A  + G   + K L+  GA++NA    G   
Sbjct: 20  GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNARSKDGN-- 76

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
           TP H A K G    V+LL + GA+   R+       
Sbjct: 77  TPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++ L ++GA +    K+G TP  +A   +G   + K L   GA++NA   G    
Sbjct: 53  GHAEIVKLLLAKGADVNARSKDGNTPEHLAKK-NGHHEIVKLLDAKGADVNARSWGSS-- 109

Query: 88  TPLHH 92
              HH
Sbjct: 110 HHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 74  GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 133
           G    +      G TPLH+AAK G    V+ LLS GA+   R+ D +T L +A   GH  
Sbjct: 1   GHMWGSKD----GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56

Query: 134 VVRAIESH 141
           +V+ + + 
Sbjct: 57  IVKLLLAK 64

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 84.8 bits (211), Expect = 5e-19
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG-TPLHHAA 94
           L S+ + L   D++G+ PL  +        +   L+    N+N        G TP H A 
Sbjct: 22  LHSKPSLLLQKDQDGRIPLHWSVS-FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80

Query: 95  KRGLEPTVRLLLS--CGANALVRNDDCHTALGVARIKGHINVVR 136
             G    V+ L       +     +   T L +A  K    V +
Sbjct: 81  SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 28  GDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIE--LGANINAYRP 82
              +    L S+  ++   ++ D  G TP  +AC   G + V K+L +  L  ++N    
Sbjct: 47  QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNK--I 103

Query: 83  GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
             +G T LH A  +      + L+  GA+  +++      L  A   G + ++  +   
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.3 bits (202), Expect = 1e-17
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 37  RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR 96
           R     L  +  +G T L +A        V++ LIE GA++       +   PLH AA  
Sbjct: 94  RPLKPDLNKITNQGVTCLHLAVG-KKWFEVSQFLIENGASVRIKDKFNQ--IPLHRAASV 150

Query: 97  GLEPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVRA-IESH 141
           G    + LL   G +A+  ++    T L  A  +GH +     +E +
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.6 bits (195), Expect = 7e-17
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
              PL  ACM++    V + L    + +        G  PLH +           LLS  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 110 AN---ALVRNDDCHTALGVARIKGHINVVRAIESH 141
            N       +D   T   +A   G++ VV+++   
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.3 bits (194), Expect = 1e-16
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-INAYRPGGRG 86
              +  + L   GAS+   DK  + PL  A    G + + + L  LG + +N     G  
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAAS-VGSLKLIELLCGLGKSAVNWQDKQGW- 175

Query: 87  GTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142
            TPL HA   G      LL+   GA   + ++    A  VA    +  V +   +++
Sbjct: 176 -TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNV 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.9 bits (210), Expect = 6e-19
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
           +  +     D++ +T L  AC  +G   + + L++LG  +N       G +PLH AA  G
Sbjct: 28  ADKSLATRTDQDSRTALHWACS-AGHTEIVEFLLQLGVPVND--KDDAGWSPLHIAASAG 84

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
            +  V+ LL  GA+    N +  T L  A  K    +   +   
Sbjct: 85  XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 73.0 bits (179), Expect = 6e-15
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + +  L   G  +   D  G +PL +A   +G   + K L+  GA++NA    G   
Sbjct: 51  GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS-AGXDEIVKALLVKGAHVNAVNQNGC-- 107

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           TPLH+AA +       +LL  GAN   ++    TA+  A  KG++ +V  +  +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.1 bits (169), Expect = 2e-13
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G  + ++AL  +GA +  +++ G TPL  A        +A  L+E GAN +A        
Sbjct: 84  GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAKDHYDA-- 140

Query: 88  TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           T +H AA +G    V +LL   A+  +++ + +T L +A  +  +   + + + 
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.4 bits (167), Expect = 3e-13
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
                 +A     L  + + ++   +         R  T LH A   G    V  LL  G
Sbjct: 7   NIMICNLAYS-GKLDELKERILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLG 63

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                ++D   + L +A   G   +V+A+   
Sbjct: 64  VPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              + +   Q+    L+        +    L   GA+ +  D    T +  A    G + 
Sbjct: 95  KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLK 153

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           +   L+   A+ N     G   TPLH A         + L++ GA+  + N +  T L V
Sbjct: 154 MVHILLFYKASTNIQDTEGN--TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

Query: 126 ARIKGHINVVR 136
           A  KG + ++ 
Sbjct: 212 A--KGGLGLIL 220

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 54.9 bits (132), Expect = 9e-09
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              N   +       +++    G++  +  L    AS    D EG TPL +AC D   + 
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DEERVE 186

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
            AK L+  GA+I          TPL  A    L   +   L+ G  
Sbjct: 187 EAKFLVTQGASIYI--ENKEEKTPLQVAKGG-LG-LILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              + + Q    +  L+       V+  + L +QGAS+   +KE KTPL VA    G + 
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA---KGGLG 217

Query: 66  VAKTLIELGANIN 78
           +    +  G   +
Sbjct: 218 LILKRLAEGEEAS 230

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.1 bits (199), Expect = 1e-18
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           G+TPL +A   +G + V K L+E GA++NA    GR  TPLH AA+ G    V+LLL  G
Sbjct: 2   GRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAG 58

Query: 110 ANALVRNDDCHTALGVARIKGHINVVR 136
           A+   ++ +  T L +A   GH+ VV+
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVK 85

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 76.2 bits (189), Expect = 2e-17
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA    GR  
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGR-- 69

Query: 88  TPLHHAAKRGLEPTVRLLLSCGA 110
           TPLH AA+ G    V+LLL  GA
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 54.3 bits (132), Expect = 1e-09
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G TPLH AA+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+ +   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 86.9 bits (215), Expect = 1e-18
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86
           +  +D +  L +    ++ +  E      +A  ++G ++V   L EL             
Sbjct: 105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAA-ENGHLHVLNRLCELAPTEIMAMIQAEN 163

Query: 87  GTPLHHAAKRG-LEPTVRLLLSCGAN---ALVRNDDCHTALGVARIKGHINVVRAIESH 141
                 AA+ G L   +  L         A+++ ++ +     A  +GH NV+  +   
Sbjct: 164 YHAFRLAAENGHLH-VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 221

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 15/119 (12%)

Query: 28  GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           G +  +  L     +        E       A +  G  NV   L++    +        
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY------ 227

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144
                 H  + G +     +            + H A  ++   G  ++V   E    +
Sbjct: 228 ---AEIHEFEYGEKYVNPFIARHVNR----LKEMHDAFKLSNPDGVFDLVTKSECLQGF 279

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 12/102 (11%)

Query: 47  DKEGKTPLIVACM--DSGLINVAKTLIEL-----GANINAYRPGGRGGTPLHHAAKRGLE 99
             +G   L       D  L++  + L+ +      A        G     L  A + G +
Sbjct: 275 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT--IPGDANELLRLALRLGNQ 332

Query: 100 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
               LLLS  +   +   +      +    G +++      H
Sbjct: 333 GACALLLSIPSVLALTKAN---NYYINETGGRLDLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 11/89 (12%)

Query: 28  GDVDAIRALRS-----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
             +D IR L S       A    +  +    L +A    G       L+ + + +     
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR-LGNQGACALLLSIPSVLAL--- 347

Query: 83  GGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
                   +     G      + L    +
Sbjct: 348 --TKANNYYINETGGRLDLRAVALEHHHH 374

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 76.0 bits (187), Expect = 1e-17
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 449 KDDGSSSSCVICWEAPVEGACVP--CGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
               +   CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 3   LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 75.3 bits (185), Expect = 2e-17
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 457 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 507
           C +C + P +G  +    GH+  C  C   +K     CP+C+ +I  VI+++ 
Sbjct: 10  CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.9 bits (203), Expect = 5e-17
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 28  GDVDAIRALRSQGA--------SLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANIN 78
             V + + L  +GA          +    +G+T L  A      + + K L+ E G+N +
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ-VSNMPIVKYLVGEKGSNKD 307

Query: 79  AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
                G+  TP+  AA+ G    V  L+  GA+    +   HTA  +A+   H N+V   
Sbjct: 308 KQDEDGK--TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

Query: 139 ESH 141
           +  
Sbjct: 366 DRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.5 bits (202), Expect = 6e-17
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
            +   + GA +  MD +  TPL++A   +    +   L++ GA+   Y    R  + LH 
Sbjct: 149 AKECIAAGADVNAMDCDENTPLMLAV-LARRRRLVAYLMKAGADPTIYNKSER--SALHQ 205

Query: 93  AAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGHINVVRAIE 139
           AA       +  +L+      +    + +  TAL +       + V + +
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-------DSGLINVAKTLIELGANINA 79
           AG       +  +  ++    +  +T L            +  +++ AK  I  GA++NA
Sbjct: 103 AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                   TPL  A        V  L+  GA+  + N    +AL  A       ++ 
Sbjct: 162 --MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV 216

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 13/116 (11%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G+        +        + E    L      S    + + +     NI          
Sbjct: 72  GNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS--YAITEPITRESVNIID---PRHNR 126

Query: 88  TPLHHAAKRGLEPTVRLLL--------SCGANALVRNDDCHTALGVARIKGHINVV 135
           T LH  A          L+        + GA+    + D +T L +A +     +V
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95
           +  +G++ +  D++GKTP+++A    G I V   LI+ GA++ A        T    A  
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQ-EGRIEVVMYLIQQGASVEA--VDATDHTARQLAQA 355

Query: 96  RGLEPTVRLLLSCGAN 111
                 V +   C   
Sbjct: 356 NNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 11/100 (11%), Positives = 17/100 (17%), Gaps = 5/100 (5%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
                 P       +G   +               P       LH  A          + 
Sbjct: 58  QHYSLYPNPQGYG-NGNDFLGDFNHTNLQIPTE--PEPESPIKLHTEAAGSYA-ITEPIT 113

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146
               N ++      T L              +  H    C
Sbjct: 114 RESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 9/95 (9%), Positives = 17/95 (17%), Gaps = 13/95 (13%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
               +  L+ A  D            +    N  +       P       G +       
Sbjct: 34  ITSSQHSLLEASYD----------GYIKRQRNELQHYSL--YPNPQGYGNGNDFLGDFNH 81

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           +          +    L      G   +   I   
Sbjct: 82  TNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRE 115

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
           G ++ +  L  QGAS+E +D    T   +A   +   N+           
Sbjct: 324 GRIEVVMYLIQQGASVEAVDATDHTARQLAQ-ANNHHNIVDIFDRCRPER 372

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 17/127 (13%)

Query: 28  GDVDAIRALRSQGASLEWM-----DKEGKTPLIVACMDSGLINVAKTLIELGANINA--- 79
            +++A   L      L +        EG+T L +A + +  +N+ + L+  GA+++A   
Sbjct: 48  DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI-NQNVNLVRALLARGASVSARAT 106

Query: 80  --------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 131
                   +     G  PL  AA  G E  VRLL+  GA+   ++   +T L +  ++ +
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN 166

Query: 132 INVVRAI 138
                 +
Sbjct: 167 KTFACQM 173

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 17/122 (13%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---GGRGGTPLHH 92
           L+ +G  +      G+T L +A +    +  A  L+E    +           G T LH 
Sbjct: 23  LKFEGCEVHQRGAMGETALHIAAL-YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81

Query: 93  AAKRGLEPTVRLLLSCGANALVRNDDCH-------------TALGVARIKGHINVVRAIE 139
           A        VR LL+ GA+   R                    L  A   G   +VR + 
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141

Query: 140 SH 141
            H
Sbjct: 142 EH 143

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
            ++PL++A  ++ +  ++K L   G  ++    G  G T LH AA         +L+   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQ--RGAMGETALHIAALYDNLEAAMVLMEAA 60

Query: 110 ANAL-----VRNDDCHTALGVARIKGHINVVRAIESH 141
              +         +  TAL +A I  ++N+VRA+ + 
Sbjct: 61  PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 26/140 (18%)

Query: 25  VIAGDVDAIRALRSQGA-------------SLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
           VI  +V+ +RAL ++GA                 +   G+ PL  A    G   + + LI
Sbjct: 83  VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLI 141

Query: 72  ELGANINAYRPGGRGGTPLHHAAKRGLEPTVR----LLLSCGAN------ALVRNDDCHT 121
           E GA+I A      G T LH    +  +        LLLS           LV N+   T
Sbjct: 142 EHGADIRA--QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT 199

Query: 122 ALGVARIKGHINVVRAIESH 141
              +A ++G+I + + +   
Sbjct: 200 PFKLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA---- 79
           G  + +R L   GA +   D  G T L +  +       A  +  L        +     
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHILIL-QPNKTFACQMYNLLLSYDGGDHLKSLE 190

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
             P  +G TP   A   G     + L+    +
Sbjct: 191 LVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 71.7 bits (176), Expect = 6e-16
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 457 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
           C++C E  +     PCGH   C SC ++++     CPVCR+++  V  +Y
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVY 66

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 26/136 (19%), Positives = 40/136 (29%), Gaps = 27/136 (19%)

Query: 28  GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAKTLIELGAN 76
           G  D I  L       + +             +G+T L +A      + +   L+E GA+
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE-RRNMTLVTLLVENGAD 126

Query: 77  INA------------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHT 121
           + A                  G  PL  AA       V+ LL      A+   R+   +T
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 122 ALGVARIKGHINVVRA 137
            L          V   
Sbjct: 187 VLHALVEVADNTVDNT 202

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 71.4 bits (175), Expect = 5e-14
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 26/138 (18%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMD--SGLINVAKTLIELGANINAYR 81
            +   +  ++  + +    E+ D E GKT L+ A ++  +G  +    L+++    ++ +
Sbjct: 28  ELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87

Query: 82  PG---------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC------------- 119
                       +G T LH A +R     V LL+  GA+     +               
Sbjct: 88  QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF 147

Query: 120 -HTALGVARIKGHINVVR 136
               L +A     + +V+
Sbjct: 148 GELPLSLAACTNQLAIVK 165

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 21/119 (17%)

Query: 38  SQGASLEWMDKEGKTPLIVACMD------SGLINVAKTLIELGANINAYRPGGRGGTPLH 91
           S  A  +      +  +  A           L+   +   +   +    +    G T L 
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEF-KDPETGKTCLL 59

Query: 92  HA---AKRGLEPTVRLLLSCGA---------NALVRNDDC--HTALGVARIKGHINVVR 136
            A      G   T+ LLL             NA   +      TAL +A  + ++ +V 
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 28  GDVDAIRALRSQGASLEWMDKE--------------GKTPLIVACMDSGLINVAKTLIEL 73
            ++  +  L   GA ++                   G+ PL +A   +  + + K L++ 
Sbjct: 112 RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC-TNQLAIVKFLLQN 170

Query: 74  G---ANINAYRPGGRGGTPLHHAAKRG----------------LEPTVRLLLSCGANALV 114
               A+I+A      G T LH   +                  +      L        +
Sbjct: 171 SWQPADISA--RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEI 228

Query: 115 RNDDCHTALGVARIKGHINVVRAI 138
            N    T L +A   G I V+  I
Sbjct: 229 TNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 18/124 (14%), Positives = 31/124 (25%), Gaps = 27/124 (21%)

Query: 28  GDVDAIRALRSQG---ASLEWMDKEGKTPLIVAC---------------MDSGLINVAKT 69
             +  ++ L       A +   D  G T L                   M + ++ +   
Sbjct: 159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218

Query: 70  LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 129
           L              +G TPL  AA  G    +  +L    +              A   
Sbjct: 219 LHPTLKLEEI--TNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHH 269

Query: 130 GHIN 133
            H +
Sbjct: 270 HHHH 273

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 73.3 bits (180), Expect = 9e-15
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 31/141 (21%)

Query: 28  GDVDAIRALRSQGASLE-------------WMDKEGKTPLIVACMDSGLINVAKTLIELG 74
             +  ++ L   GA +                   G+ PL +A   +   +V   L+E  
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENP 159

Query: 75  ---ANINA--------------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND 117
              A++ A                      + L      GL      L        + N 
Sbjct: 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219

Query: 118 DCHTALGVARIKGHINVVRAI 138
              T L +A  +G I + R I
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 23/155 (14%), Positives = 38/155 (24%), Gaps = 42/155 (27%)

Query: 28  GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAKTLIELGAN 76
           G    I  L                       +G + L +A      +   K L+E GA+
Sbjct: 57  GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE-KRSLQCVKLLVENGAD 115

Query: 77  INA-----------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---------------- 109
           ++                  G  PL  AA       V  LL                   
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175

Query: 110 ---ANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                 +  N   ++AL +    G + +   +   
Sbjct: 176 LHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 32/150 (21%)

Query: 19  ELLYQWVIAGDVDAIRAL----RSQGASLEW----MDKEGKTPLIVACMDS--GLINVAK 68
           + L+  V  G  + +  L    R     L          GKT L+ A ++   G+     
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 69  TLIELGANINAYRPGG---------RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119
            L+++  +    +P           +G + LH A ++     V+LL+  GA+  +R    
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 120 -------------HTALGVARIKGHINVVR 136
                           L +A      +VV 
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
              +   +    + L++   D GL+ +   L              +G TPL  AAK G  
Sbjct: 178 ALVMIADNSPENSALVIHMYD-GLLQMGARLCPTVQLEEI--SNHQGLTPLKLAAKEGKI 234

Query: 100 PTVRLLLSCGAN 111
              R +L    +
Sbjct: 235 EIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87
           G +     L       E  + +G TPL +A    G I + + +++   +           
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPLKLAA-KEGKIEIFRHILQREFSGA--------- 248

Query: 88  TPLHHAA 94
              HH  
Sbjct: 249 AAHHHHH 255

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 457 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
           C IC +  +    VPCGH+  C  C   +      CP+C T I    +++
Sbjct: 28  CKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIF 73

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 444 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 503
           S+     + +S  CV+C    V    +PC H   C  C+   +     CP+CR  + +  
Sbjct: 5   SSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESF 60

Query: 504 RLY 506
            L 
Sbjct: 61  ALS 63

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.4 bits (172), Expect = 2e-13
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 1/138 (0%)

Query: 2   GQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS 61
                 +N ++Q+   +  L + +     +   +L +  ++                 DS
Sbjct: 48  ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 107

Query: 62  GLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT 121
            L  V         N+N       G TPLH          V+ L+  G+N L  ++   +
Sbjct: 108 LLQEVNDAFPNTQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 166

Query: 122 ALGVARIKGHINVVRAIE 139
            L  A    +       E
Sbjct: 167 CLVKAVKSVNNYDSGTFE 184

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.1 bits (127), Expect = 9e-08
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTL---IELGANINAYRPGGRGGTPLHH 92
           +  +           K             ++ + L     +   +NA      G T L+ 
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA--QDSNGDTCLNI 289

Query: 93  AAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
           AA+ G    V  LL  GA+  + N      +
Sbjct: 290 AARLGNISIVDALLDYGADPFIANKSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 33  IRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           +         L   D  G T L +A    G I++   L++ GA+         G  P+  
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNIAAR-LGNISIVDALLDYGADPFI--ANKSGLRPVDF 322

Query: 93  AA 94
            A
Sbjct: 323 GA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 17/116 (14%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSG-----------LINVAKTLIELGANINAYRPGG 84
           L      L   D   +T L    + SG           L  +   +++          G 
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS--GT 244

Query: 85  RGGTPLHHAAKRGLEPTVRLLLSCGANALV----RNDDCHTALGVARIKGHINVVR 136
                  +      + ++   L            ++ +  T L +A   G+I++V 
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 300

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 65.8 bits (160), Expect = 3e-12
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 10/144 (6%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK------EGKTPLIVACM-- 59
             +H    +K   L + V   D+  +    + G  L             +T L +A    
Sbjct: 121 RKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV 180

Query: 60  DSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119
           D   +++   L++   N++     G   T LH+         ++LLL   A+  + N+  
Sbjct: 181 DRTSLHIVDFLVQNSGNLDKQTGKGS--TALHYCCLTDNAECLKLLLRGKASIEIANESG 238

Query: 120 HTALGVARIKGHINVVRAIESHIC 143
            T L +A+   H +    +   + 
Sbjct: 239 ETPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 7/116 (6%)

Query: 2   GQSLNSMNQHQQRQSKDE-LLYQWVIAGD---VDAIRALRSQGASLEWMDKEGKTPLIVA 57
           G  L            DE  L+  V + D   +  +  L     +L+    +G T L   
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212

Query: 58  CMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANAL 113
           C+ +      K L+   A+I      G   TPL  A +   E    LL    +   
Sbjct: 213 CL-TDNAECLKLLLRGKASIEIANESGE--TPLDIAKRLKHEHCEELLTQALSGRF 265

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 65.2 bits (159), Expect = 5e-12
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 33/156 (21%)

Query: 19  ELLYQWVIAGDVDAIRA----LRSQGASLEWMDKE----GKTPLIVACMDS--GLINVAK 68
            +L+  V  G  D +      L +    L   +      GKT L  A ++   G  +   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 69  TLIELGANINAYRPG---------GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119
            L+++       R            RG T LH A +R  +  V LL+  GA+   +    
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 120 --------------HTALGVARIKGHINVVRAIESH 141
                            L +A      ++V  +  +
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 41  ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------------YRPGGRGGT 88
           +    +   G+T L +A       +  + L+E GA+++A                  G  
Sbjct: 84  SPFRDVYYRGQTALHIAIE-RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142

Query: 89  PLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKGH 131
           PL  AA       V  L   G   A+   ++   +T L        
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 16/100 (16%)

Query: 28  GDVDAIRALRSQG---ASLEWMDKEGKTPLIVACM--------DSGLINVAKTLIELGAN 76
                +  L   G   A L   D  G T L                +  +   L+   A 
Sbjct: 151 NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK 210

Query: 77  INAYRPGGR-----GGTPLHHAAKRGLEPTVRLLLSCGAN 111
           +             G +PL  AAK G     + ++     
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 36/147 (24%)

Query: 28  GDVDAIRALRSQGA--------------SLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
                +  L  +GA                      G+ PL +A   +   ++   L E 
Sbjct: 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC-TNQPHIVHYLTEN 162

Query: 74  G---ANINAYRPGGRGGTPLHHAA---------KRGLEPTVRLLLSCGAN-------ALV 114
           G   A++       RG T LH             + +     LLL   A          +
Sbjct: 163 GHKQADLRR--QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL 220

Query: 115 RNDDCHTALGVARIKGHINVVRAIESH 141
            N+D  + L +A   G I + + I   
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92
           + +G +PL++A   +G I + + +I       A           HH
Sbjct: 222 NNDGLSPLMMAAK-TGKIGIFQHIIRREIADAAAH------HHHHH 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKE------GKTPLIVACM--DSGLINVAKTLIELGAN 76
           +   D+ ++    + G                +  L +A    +   + +   +I+ G +
Sbjct: 159 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH 218

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 135
           ++A    G   T LH+AA       ++LLL   A     N+   TAL +AR K H    
Sbjct: 219 LDAKAADGN--TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE 99
           G  L+    +G T L  A +     +  K L++  A +      G   T L  A K+  +
Sbjct: 216 GGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRALVGTVNEAGE--TALDIARKKHHK 272

Query: 100 PTVRLLLSCGANAL 113
               LL    A   
Sbjct: 273 ECEELLEQAQAGTF 286

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 62.7 bits (150), Expect = 8e-11
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 457 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
           C +C +  V    +PCGH+  C  C   ++     CP+CR  I   +R +
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTF 343

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 10/133 (7%)

Query: 15  QSKDELLYQWVIAGDVDAIRALRSQGASLEWM------DKEGKTPLIVACMDSGLINVAK 68
             + + L+  +   D+ ++    + G                +  L +A   +   ++  
Sbjct: 130 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL 189

Query: 69  T--LIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
              +I+ G +++A    G   T LH+AA       ++LLL   A     N+   TAL +A
Sbjct: 190 VDFIIQNGGHLDAKAADGN--TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

Query: 127 RIKGHINVVRAIE 139
           R K H      +E
Sbjct: 248 RKKHHKECEELLE 260

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM--DKEGKTPLIVACMDSGL 63
                         L         +  +    + GA + W+   ++  TPLI A   + L
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248

Query: 64  INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTAL 123
           +     L++ GAN+N       G  PLHHA   G      L L  GA+   R+ +    L
Sbjct: 249 LACE-FLLQNGANVNQ--ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305

Query: 124 GVARIKGHINVVR 136
            +A    + ++V 
Sbjct: 306 TIAMETANADIVT 318

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 21/100 (21%), Positives = 30/100 (30%)

Query: 37  RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR 96
           + +  S +         L  A      +      +  GA++N    G    TPL  A   
Sbjct: 186 KPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA 245

Query: 97  GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
                   LL  GAN    +      L  A I GH  +  
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC 285

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 419 EGPIRYPSVENSVADL----------HLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGA 468
           EG   +P   N   DL          H+ V ++       +   +   C IC E   +  
Sbjct: 288 EGFYLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYC-EMGSTFQLCKICAENDKDVK 346

Query: 469 CVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKI--NQVIRLY 506
             PCGH+  C SCL+   +++   CP CR +I   + I + 
Sbjct: 347 IEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.4 bits (123), Expect = 7e-09
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 444 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 500
           S+ N     +   C IC +  V    +PC H+  C  C+         C +CR +I 
Sbjct: 5   SSGNTAPSLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIP 60

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 452 GSSSSCVICWEAPVEGACV-------PCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQV 502
           G+  SC IC +   E            CGH+  C  CL +       CP CR KI   + 
Sbjct: 1   GAMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRY 59

Query: 503 IRLY 506
             +Y
Sbjct: 60  HPIY 63

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 444 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 502
           S+   +++     C IC +A        C H   C SC  E       C +C      +
Sbjct: 5   SSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGGI 62

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 10/71 (14%)

Query: 445 ASNVKDDGSSSSCVICWE-------APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 497
            +       + SC IC +                CGH+  C  CL +       CP CR 
Sbjct: 1   GTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRK 59

Query: 498 KI--NQVIRLY 506
           KI   +   +Y
Sbjct: 60  KINHKRYHPIY 70

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 456 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 508
            C+IC E  +E   + C H   C  C++E   +K +CP+CR  I        +
Sbjct: 66  QCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKTYSLVL 117

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 504
            +  C IC E P   +   PC H   C  C++    +   CP+C+  +  V+ 
Sbjct: 4   VAERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH 55

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 46.4 bits (110), Expect = 9e-07
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 448 VKDDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSE-IKAKKGDCPVCRTKINQ 501
           V+       C IC E   +    P C  +  C SC+   +  ++  CP CR  +  
Sbjct: 16  VESIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 444 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQV 502
              +     S   C IC E  VE   +PC H   C  C      K    CP CR +++  
Sbjct: 5   LPKDAIPSLSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSSW 63

Query: 503 IRLYT 507
            R +T
Sbjct: 64  TRYHT 68

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 457 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKINQ 501
           C  C           CGH   C SC++ + +     C  C+  I +
Sbjct: 18  CEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 444 SASNVKDDGSSSSCVICWEAPVEGACV-------PCGHMAGCMSCLSEIKAKKGDCPVCR 496
           S + ++  G+ S C IC +   E            CGH+  C  CL +       CP CR
Sbjct: 6   SGTGLRPSGTVS-CPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCR 63

Query: 497 TKINQ 501
            KIN 
Sbjct: 64  KKINH 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 38/264 (14%), Positives = 68/264 (25%), Gaps = 85/264 (32%)

Query: 45  WMDKEGKTPLIVACMD----SGLINV----AKTLI--ELGANINAYRPGGRGGTPLHHAA 94
              K  +  L+V  +     +   N      K L+        +           L H +
Sbjct: 238 LKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 95  KRGLEP--TVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRA-IESHICYFCGW 148
              L P     LLL        R  D    L    +  +   ++++   I   +  +  W
Sbjct: 296 M-TLTPDEVKSLLLKY---LDCRPQD----LPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 149 LREFYGP------SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE-LVIYPSLQDVQ- 200
                        S L  L P    +                   F+ L ++P       
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRK------------------MFDRLSVFP--PSAHI 387

Query: 201 PRAVIA-LWKAKIDE------PKFH-------QPDPS-LTIYDQATKIR----------- 234
           P  +++ +W   I         K H       QP  S ++I     +++           
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 235 -----YKFASANEGDKHQLQWLDN 253
                Y      + D     +LD 
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQ 471

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 456 SCVICWEAPVEGACVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKINQ 501
            C+ C E         C H   C  CL    +A+   CP CR  + +
Sbjct: 54  QCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 32/128 (25%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 378 KQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLP 437
                   L  P      S    +S SA          +  +  IR       + D  L 
Sbjct: 6   HHHHHSSGL-VPRGSPSASKVYKASDSAEAIEAFQLTPQQ-QHLIREDCQNQKLWDEVLS 63

Query: 438 VLEDGVSASNVKDDGSSSSCVICWE---APVEGACVPCGHMAGCMSCLSE-IKAKKGDCP 493
            L +G +   +K    S  CV C E    PV      C H   C  CL    KA+   CP
Sbjct: 64  HLVEGPNF--LKKLEQSFMCVCCQELVYQPVT---TECFHNV-CKDCLQRSFKAQVFSCP 117

Query: 494 VCRTKINQ 501
            CR  + Q
Sbjct: 118 ACRHDLGQ 125

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 6/62 (9%)

Query: 445 ASNVKDDGSSSSCVICWE----APVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKI 499
           + +         C +C E      +      CG+   C  C   I+    G CP CR   
Sbjct: 2   SRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPY 60

Query: 500 NQ 501
            +
Sbjct: 61  PE 62

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 456 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 500
            C IC  A  E    PCGH   C +C+ +     G  CPV    + 
Sbjct: 20  ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILL 64

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 444 SASNVKDDGSSSSCVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 500
           S+ N+ +      C IC              C H   C SC+         CP C   ++
Sbjct: 5   SSGNLSELTPYILCSICKGYLIDAT--TITECLH-TFCKSCIVRHFYYSNRCPKCNIVVH 61

Query: 501 Q 501
           Q
Sbjct: 62  Q 62

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 456 SCVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501
            C IC+E     +      C H   C  C+ +  + K  CP C   + +
Sbjct: 24  RCGICFEYFNIAM--IIPQCSH-NYCSLCIRKFLSYKTQCPTCCVTVTE 69

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 444 SASNVKDDGSSSSCVICWEAPVEGACVP----CGHMAGCMSCLSEIKAKKGD---CPVCR 496
           S+ N+        C IC E+  E    P    CGH   C  CL ++ A   +   CP C 
Sbjct: 5   SSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCS 63

Query: 497 --TKINQVIRL 505
             T+I  + +L
Sbjct: 64  KITRITSLTQL 74

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 457 CVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501
           CV+C            + C H   C +C+         CP+C  ++++
Sbjct: 18  CVLCGGYFIDAT--TIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 456 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKINQ 501
            C IC  A  E    PCGH   C +C+ +     G  CPV    + +
Sbjct: 20  ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 444 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 499
           S+  VK       C IC +       +PC H + C  C+ +   +  +CP+CR ++
Sbjct: 5   SSGRVKQLTDEEECCICMD-GRADLILPCAH-SFCQKCIDKWSDRHRNCPICRLQM 58

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 444 SASNVKDDGSSSSCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAKKGDCPVCRTKI 499
           S+  VK+      C +C E       +   PC H      CL +    +  CP+C   +
Sbjct: 5   SSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPV 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	508
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.98
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.49
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.49
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.38
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.25
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.2
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.16
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.11
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.1
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.08
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.06
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.05
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.05
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.02
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.02
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.0
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.99
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.98
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.94
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.94
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.94
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.93
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.92
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.92
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.92
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.91
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.91
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.91
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.9
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.88
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.87
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.86
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.85
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.82
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.81
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.78
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.77
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.77
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.76
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.76
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.75
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.74
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.73
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.72
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.69
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.69
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.67
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.67
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.66
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.66
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.64
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.64
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.61
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.61
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.59
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.58
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.56
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.46
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.34
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.31
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.28
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.27
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.24
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.0
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.97
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.81
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.66
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.52
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.25
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.94
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	95.22
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	94.1
3nw0_A	238	Non-structural maintenance of chromosomes element	89.9
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	89.5

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.8e-35  Score=265.24  Aligned_cols=159  Identities=31%  Similarity=0.392  Sum_probs=150.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCC
Q 010517           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (508)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~   98 (508)
                      +.|+.||+.|+.++|+.||++|+|+|.+|.+|+||||+|+.. ++.+++++|+++|++++.+  |..|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~-~~~~~~~~ll~~gad~~~~--d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhhh--ccCCCCHHHHHHHcCC
Confidence            579999999999999999999999999999999999999997 9999999999999999998  8899999999999999


Q ss_pred             HHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCC
Q 010517           99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (508)
Q Consensus        99 ~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g  178 (508)
                      .++|++|+++|++++.+|.+|+||||+|+..|+.+++++|+++|++++  .+|.+|+|||| +|+..|+.+++++|+++|
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLD-LAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999  99999999999 999999999999999999


Q ss_pred             CCCCC
Q 010517          179 TANPS  183 (508)
Q Consensus       179 ~~~~~  183 (508)
                      ++++.
T Consensus       160 A~ie~  164 (169)
T 4gpm_A          160 GWLEH  164 (169)
T ss_dssp             -----
T ss_pred             CCcCC
Confidence            98854

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3e-35  Score=278.31  Aligned_cols=219  Identities=23%  Similarity=0.242  Sum_probs=204.9

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (508)
                      ++.+.+|.+|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. |+.+++++|+++|++++.+  +..|.
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~   78 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKAGALVDPK--DAEGS   78 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCCCCC--CTTSC
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHh-CCHHHHHHHHhCCCCCCCC--CCCCC
Confidence            56788999999999999999999999999999999999999999999999998 9999999999999999988  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcC
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~  166 (508)
                      ||||+|+..|+.+++++|++.| ++++..+..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..+
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~  155 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLH-WAAFSG  155 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHC
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHCC
Confidence            9999999999999999999998 8999999999999999999999999999999999999  89999999999 999999


Q ss_pred             CHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcC
Q 010517          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (508)
Q Consensus       167 ~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~  242 (508)
                      +.+++++|+++|++++..+..+.++++.++..+....+..|+        .++.|  ++.+|..|+||+++|....
T Consensus       156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll--------~~gad--~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL--------SRDSD--VTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH--------TTTCC--TTCCCTTSCCHHHHSCTTC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHH--------HcCCC--CCccCCCCCCHHHHHHHHH
Confidence            999999999999999999989999999999988866555433        34777  7889999999999998654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-35  Score=288.28  Aligned_cols=215  Identities=20%  Similarity=0.142  Sum_probs=186.9

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (508)
                      +.+|.+|.||||+|+..|+.++|++|+++|++   ++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~   79 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGH   79 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCC
Confidence            56799999999999999999999999999998   889999999999999998 9999999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCC-----------------------------------------------ccccCCCCC
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCGAN-----------------------------------------------ALVRNDDCH  120 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~d~~g~  120 (508)
                      ||||+|+..|+.+++++|+++|++                                               ++..|..|.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            999999999999999999998765                                               677889999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCccccccccc-CCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCcccccccccccccc
Q 010517          121 TALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV  199 (508)
Q Consensus       121 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~  199 (508)
                      ||||+|+..|+.+++++|+++|++++  .++. .|+|||| +|+..++.+++++|+++|++++.++..+.++++.++..+
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~  236 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP  236 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHH-HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence            99999999999999999999999999  7774 5999999 999999999999999999999999999999999999998


Q ss_pred             ChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517          200 QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (508)
Q Consensus       200 ~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~  241 (508)
                      +...+..|+.        ++++  ++.+|..|.||++++...
T Consensus       237 ~~~~v~~Ll~--------~ga~--~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          237 NPILARLLRA--------HGAP--EPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             CHHHHHHHHH--------TTCC--CCCCC-------------
T ss_pred             CcHHHHHHHH--------cCCC--cCcCCCcccccccccCCc
Confidence            8666555443        3788  888999999999998753

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.7e-35  Score=283.51  Aligned_cols=228  Identities=21%  Similarity=0.187  Sum_probs=173.5

Q ss_pred             cCcccccCCchHHHHHHHHcC-------------CHHHHHHHHHcCCCCCc-cCCCCChHHHHHHHhCCCHHHHHHHHHc
Q 010517            8 MNQHQQRQSKDELLYQWVIAG-------------DVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIEL   73 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g-------------~~~~v~~Ll~~g~~~~~-~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~   73 (508)
                      +++|.+|.+|.||||+|+..|             +.++|++|+++|++++. .|..|.||||+|+.. |+.+++++|+++
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~   79 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY-SRSDAAKRLLEA   79 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHT-TCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHc
Confidence            367889999999999999977             89999999999999865 589999999999998 999999999999


Q ss_pred             CCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccccccccc
Q 010517           74 GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA-NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF  152 (508)
Q Consensus        74 ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  152 (508)
                      |++++.+  |..|+||||+|+..|+.+++++|++.++ +++..|..|.||||+|+..|+.+++++|++.|++++  .+|.
T Consensus        80 g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~  155 (253)
T 1yyh_A           80 SADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDD  155 (253)
T ss_dssp             TCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCT
T ss_pred             CCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCC
Confidence            9999998  8899999999999999999999999987 899999999999999999999999999999999999  8999


Q ss_pred             CCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCc
Q 010517          153 YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATK  232 (508)
Q Consensus       153 ~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~  232 (508)
                      .|.|||| +|+..++.+++++|+++|++++..+..+.++++.++..+....+..|+..        +++  ++.+|..|+
T Consensus       156 ~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--------ga~--~~~~d~~g~  224 (253)
T 1yyh_A          156 LGKSALH-WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH--------FAN--RDITDHMDR  224 (253)
T ss_dssp             TSCBHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--------TCC--TTCCCTTCC
T ss_pred             CCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc--------CCC--ccccccCCC
Confidence            9999999 99999999999999999999999999999999999998887666554443        677  778899999


Q ss_pred             chhHhhhhcCCChhHHHHHH
Q 010517          233 IRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       233 t~l~~a~~~~~~~~~l~~l~  252 (508)
                      ||+++|... +....++.|.
T Consensus       225 tpl~~A~~~-g~~~i~~~l~  243 (253)
T 1yyh_A          225 LPRDIAQER-MHHDIVRLLD  243 (253)
T ss_dssp             CHHHHHHHT-TCHHHHHHHH
T ss_pred             CHHHHHHHc-CCHHHHHHHH
Confidence            999999754 5556666654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=282.40  Aligned_cols=223  Identities=19%  Similarity=0.161  Sum_probs=202.3

Q ss_pred             CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t   88 (508)
                      ..+.+|..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+.. |+.+++++|+++|++++.+  |..|+|
T Consensus        51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~t  127 (285)
T 3d9h_A           51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV--TADWHT  127 (285)
T ss_dssp             TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHT-TCHHHHHHHHHTTCCSSCC--CTTCCC
T ss_pred             cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCCCC--CCCCCC
Confidence            3567899999999999999999999999999999999999999999999997 9999999999999999998  889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCH
Q 010517           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  168 (508)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~  168 (508)
                      |||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.
T Consensus       128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~  203 (285)
T 3d9h_A          128 PLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQR  203 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCH
T ss_pred             HHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCcH
Confidence            999999999999999999999999854 459999999999999999999999999999  89999999999 99999999


Q ss_pred             HHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHH
Q 010517          169 KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQL  248 (508)
Q Consensus       169 ~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l  248 (508)
                      +++++|+++|++++. +..+.++++.++..++...+..|+..        ++|  ++.+|..|+||+++|...   ...+
T Consensus       204 ~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--------gad--~~~~d~~g~t~l~~A~~~---~~~~  269 (285)
T 3d9h_A          204 ACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF--------GAD--TQAKNAEGKRPVELVPPE---SPLA  269 (285)
T ss_dssp             HHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT--------TCC--TTCCCTTSCCGGGGSCTT---SHHH
T ss_pred             HHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--------CCC--CCCcCCCCCCHHHHhcCc---cHHH
Confidence            999999999999985 66789999999998887666554432        677  888999999999999832   3455


Q ss_pred             HHHH
Q 010517          249 QWLD  252 (508)
Q Consensus       249 ~~l~  252 (508)
                      +.|.
T Consensus       270 ~~Ll  273 (285)
T 3d9h_A          270 QLFL  273 (285)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.2e-34  Score=272.85  Aligned_cols=214  Identities=21%  Similarity=0.162  Sum_probs=196.7

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      +.+|.+|.||||+|+..|+.++|++|++    .|.+++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g   79 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHG   79 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCC
Confidence            5679999999999999999999999997    7999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCC----CccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccc-cCCCCHHHHH
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGA----NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEAL  161 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~-~~g~tpL~~~  161 (508)
                      +||||+|+..|+.+++++|++.++    +++..|..|.||||+|+..|+.+++++|+++|++++  ..+ ..|.|||| +
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~-~  156 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLI-H  156 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHH-H
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHH-H
Confidence            999999999999999999999987    889999999999999999999999999999999998  777 78999999 9


Q ss_pred             HhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhh
Q 010517          162 APQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (508)
Q Consensus       162 A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~  240 (508)
                      |+..++.+++++|+++|++++..+..+.++++.++..+....+..|+.        +++|  ++.+|..|+||+++|..
T Consensus       157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------~ga~--~~~~~~~g~tpl~~A~~  225 (241)
T 1k1a_A          157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR--------SGAD--SSLKNCHNDTPLMVARS  225 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH--------TTCC--TTCCCTTSCCTTTTCSS
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh--------cCCC--CCCcCCCCCCHHHHHHh
Confidence            999999999999999999999999999999999999888766655544        3677  78899999999999975

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.1e-34  Score=289.57  Aligned_cols=231  Identities=15%  Similarity=0.079  Sum_probs=204.8

Q ss_pred             ccccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCC
Q 010517            5 LNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (508)
Q Consensus         5 ~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~   84 (508)
                      +..++.+.+|.+|.||||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.++|++|+++|++++    +.
T Consensus         8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~----~~   82 (364)
T 3ljn_A            8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF-GCVDTAKYLASVGEVHS----LW   82 (364)
T ss_dssp             --------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-CCHHHHHHHHHHCCCCC----CB
T ss_pred             ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCcc----cc
Confidence            45677888999999999999999999999999999999999999999999999998 99999999999999776    45


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHC----CCCccc-----------------cCCCCCcHHHHHHHhC--CHHHHHHHHHc
Q 010517           85 RGGTPLHHAAKRGLEPTVRLLLSC----GANALV-----------------RNDDCHTALGVARIKG--HINVVRAIESH  141 (508)
Q Consensus        85 ~g~tpLh~A~~~g~~~~v~~Ll~~----ga~~~~-----------------~d~~g~TpLh~A~~~g--~~~~v~~Ll~~  141 (508)
                      .|+||||+|+..|+.+++++|+++    |++++.                 .|..|.||||+|+..|  +.+++++|+++
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            799999999999999999999999    888877                 8899999999999999  99999999999


Q ss_pred             CCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC-----CCCCCccccccccccccccChHHHHHHHHhhhcCCC
Q 010517          142 ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA-----NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPK  216 (508)
Q Consensus       142 ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~-----~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~  216 (508)
                      |++++  .+|..|.|||| +|+..|+.+++++|+++|++     ++..+..+.++++.++..++...+..|+        
T Consensus       163 ga~~~--~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll--------  231 (364)
T 3ljn_A          163 GASPT--AKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV--------  231 (364)
T ss_dssp             TCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH--------
T ss_pred             CCCCc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHH--------
Confidence            99999  89999999999 99999999999999999998     8888889999999999998866555444        


Q ss_pred             CCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHHHh
Q 010517          217 FHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNA  254 (508)
Q Consensus       217 ~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~~~  254 (508)
                      .+++|  ++..|..|.|||++|+.. +....++.|+..
T Consensus       232 ~~gad--~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~  266 (364)
T 3ljn_A          232 EMGID--VNMEDNEHTVPLYLSVRA-AMVLLTKELLQK  266 (364)
T ss_dssp             TTTCC--TTCCCTTSCCHHHHHHHT-CCHHHHHHHHHH
T ss_pred             HcCCC--CCCCCCCCCCHHHHHHHh-ChHHHHHHHHHc
Confidence            34778  788999999999999865 667777777744

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.4e-34  Score=266.61  Aligned_cols=212  Identities=17%  Similarity=0.122  Sum_probs=192.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccC-CCCCCCcHHHHHH
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGASLE-WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-PGGRGGTPLHHAA   94 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~-~d~~g~tpLh~A~   94 (508)
                      |+||||+|+..|+.++|+.|++.|.++. .+|..|.||||+|+.. |+.+++++|+++|++++... .+..|+||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            7899999999999999999999998765 4899999999999998 99999999999995554432 3889999999999


Q ss_pred             HcCCHHHHHHHHHCC--CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHH
Q 010517           95 KRGLEPTVRLLLSCG--ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (508)
Q Consensus        95 ~~g~~~~v~~Ll~~g--a~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~  172 (508)
                      ..|+.+++++|+++|  ++++..|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  157 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIE  157 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHH
Confidence            999999999999998  8999999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             HhhhCC-CCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517          173 VVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (508)
Q Consensus       173 ~Ll~~g-~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~  241 (508)
                      +|+++| ++++..+..+.++++.++..++...+..|+...       ++|  ++.+|..|+||+++|...
T Consensus       158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~-------ga~--~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY-------GAE--YDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-------CCC--SCCBCTTSCBGGGGCSST
T ss_pred             HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-------CCC--CCccCCCCCcHHHHHHHH
Confidence            999999 999999999999999999999887777666332       677  788999999999999643

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=277.34  Aligned_cols=216  Identities=21%  Similarity=0.203  Sum_probs=171.1

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHHcCCC--------CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCC
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS--------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP   82 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--------~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~   82 (508)
                      .++|..+.++|+.|+..|+.++|++||+.|++        ++..|..|.||||+|+..++...++++|++.|+++|.+  
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~--   82 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT--   82 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC--
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc--
Confidence            45688899999999999999999999999875        46678889999999998734456899999999999998  


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 010517           83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA  162 (508)
Q Consensus        83 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A  162 (508)
                      |..|+||||+|+..|+.++|++|++.|++++..+..|.||||+|+..++.+++++|++.|++++  .+|..|+|||| +|
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~-~A  159 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLI-YA  159 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHH-HH
Confidence            8899999999999999999999999999999999999999999999999999999999999999  89999999999 99


Q ss_pred             hhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517          163 PQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (508)
Q Consensus       163 ~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~  241 (508)
                      +..|+.+++++|+++|++++..+..+.++++.++..++...+..|+.        +|+|  ++++|..|+|||++|+.+
T Consensus       160 ~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~--------~Gad--~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          160 CSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL--------HGAS--VQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             HHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH--------TTCC--SCCCCTTSCCSGGGSCTT
T ss_pred             HHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH--------CCCC--CCCcCCCCCCHHHHHHhC
Confidence            99999999999999999999999999999999999998776665543        3778  888999999999999754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-32  Score=267.07  Aligned_cols=229  Identities=21%  Similarity=0.177  Sum_probs=186.8

Q ss_pred             Ccccc-cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517            9 NQHQQ-RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (508)
Q Consensus         9 ~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (508)
                      +.+.+ +..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|+
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~  106 (285)
T 1wdy_A           30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVNEC--DFYGF  106 (285)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTTCC
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CcccC
Confidence            34444 67788888888888888888888888888888888888888888887 8888888888888888887  77888


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCcccc----------CCCCCcHHHHHHHhCCHHHHHHHHHc-CCcccccccccCCCC
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGPS  156 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~----------d~~g~TpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~g~t  156 (508)
                      ||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|++. |++++  .+|..|.|
T Consensus       107 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t  184 (285)
T 1wdy_A          107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRN  184 (285)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCC
T ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCCC
Confidence            8888888888888888888888888776          77788888888888888888888887 88888  78888888


Q ss_pred             HHHHHHhhcCC----HHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCc
Q 010517          157 FLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATK  232 (508)
Q Consensus       157 pL~~~A~~~~~----~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~  232 (508)
                      ||| .|+..++    .+++++|+++|++++..+..+.++++.++..++...+..|+..       .+.+  ++.+|..|+
T Consensus       185 ~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------~g~~--~~~~~~~g~  254 (285)
T 1wdy_A          185 ALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-------EHIE--INDTDSDGK  254 (285)
T ss_dssp             HHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS-------SSCC--TTCCCTTSC
T ss_pred             HHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-------cCCC--ccccCCCCC
Confidence            888 8888888    8888888888888888887888888888888776666555442       2566  777888888


Q ss_pred             chhHhhhhcCCChhHHHHHHH
Q 010517          233 IRYKFASANEGDKHQLQWLDN  253 (508)
Q Consensus       233 t~l~~a~~~~~~~~~l~~l~~  253 (508)
                      ||+++|... +....++.|..
T Consensus       255 t~l~~A~~~-~~~~i~~~Ll~  274 (285)
T 1wdy_A          255 TALLLAVEL-KLKKIAELLCK  274 (285)
T ss_dssp             CHHHHHHHT-TCHHHHHHHHH
T ss_pred             cHHHHHHHc-CcHHHHHHHHH
Confidence            998888764 45566666653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.5e-33  Score=279.22  Aligned_cols=217  Identities=22%  Similarity=0.152  Sum_probs=199.0

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      ..+.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|
T Consensus        48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~--~~~g  124 (351)
T 3utm_A           48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY-GHYEVTELLLKHGACVNAM--DLWQ  124 (351)
T ss_dssp             TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTC
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCC
Confidence            345678899999999999999999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccC--------------------------------------------------
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------------------------------------------  116 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--------------------------------------------------  116 (508)
                      +||||+|+..|+.+++++|+++|++++..+                                                  
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN  204 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence            999999999999999999999999987654                                                  


Q ss_pred             ----CCCCcHHHHHHHh---CCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCcccc
Q 010517          117 ----DDCHTALGVARIK---GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE  189 (508)
Q Consensus       117 ----~~g~TpLh~A~~~---g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~  189 (508)
                          ..|.||||+|+..   +..+++++|++.|++++  .+|.+|.|||| +|+..|+.+++++|+++|++++..+..+.
T Consensus       205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~  281 (351)
T 3utm_A          205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLH-VAAERAHNDVMEVLHKHGAKMNALDSLGQ  281 (351)
T ss_dssp             CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence                5677999999998   55899999999999999  89999999999 99999999999999999999999999999


Q ss_pred             ccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhh
Q 010517          190 LVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (508)
Q Consensus       190 ~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~  239 (508)
                      ++++.++..++...+..|+.        +++|  +++.|..|+|+++++.
T Consensus       282 t~L~~A~~~~~~~~v~~Ll~--------~gad--~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          282 TALHRAALAGHLQTCRLLLS--------YGSD--PSIISLQGFTAAQMGN  321 (351)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH--------TTCC--TTCCCTTSCCHHHHSC
T ss_pred             CHHHHHHHcCcHHHHHHHHH--------cCCC--CCCcCCCCCChhhhhh
Confidence            99999999888766665544        3777  7789999999999984

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.1e-34  Score=274.62  Aligned_cols=216  Identities=20%  Similarity=0.201  Sum_probs=189.5

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGA----SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~----~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      +.+|.+|.||||+|+..|+.++|++|++.+.    +++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g   78 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRG   78 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCC
Confidence            5678999999999999999999999998765    7899999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC------ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccccccccc-CCCCHHH
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGAN------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLE  159 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~------~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-~g~tpL~  159 (508)
                      +||||+|+..|+.+++++|++.|++      ++..+..|.||||+|+..|+.+++++|+++|++++  .++. .|.||||
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~  156 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEPCNGRTALH  156 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCCHHH
Confidence            9999999999999999999999876      57788899999999999999999999999999999  8887 9999999


Q ss_pred             HHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhh
Q 010517          160 ALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  239 (508)
Q Consensus       160 ~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~  239 (508)
                       +|+..++.+++++|+++|++++..+..+.++++.++..++...+..|+        .+++++.....+..+.|+++..+
T Consensus       157 -~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll--------~~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          157 -LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG--------QLTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             -HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH--------TTSCGGGSSCCCCCTTTCCCCC-
T ss_pred             -HHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHH--------HcchhhhhcCCccchHHHHhhhc
Confidence             999999999999999999999999999999999999988865544433        34777777788889999888765


Q ss_pred             h
Q 010517          240 A  240 (508)
Q Consensus       240 ~  240 (508)
                      +
T Consensus       228 ~  228 (236)
T 1ikn_D          228 E  228 (236)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.9e-33  Score=267.08  Aligned_cols=190  Identities=20%  Similarity=0.098  Sum_probs=181.3

Q ss_pred             cccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC-CCcccCCCCCCCcHH
Q 010517           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPL   90 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga-~~n~~~~d~~g~tpL   90 (508)
                      .+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|+ +++.+  +..|.|||
T Consensus        52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L  128 (253)
T 1yyh_A           52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPL  128 (253)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHSTTSCTTCC--CTTCCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccc--CCCCCcHH
Confidence            4588999999999999999999999999999999999999999999998 99999999999987 88888  88999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHH
Q 010517           91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKI  170 (508)
Q Consensus        91 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i  170 (508)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.++
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~-~A~~~~~~~~  205 (253)
T 1yyh_A          129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYET  205 (253)
T ss_dssp             HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHH
T ss_pred             HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999  89999999999 9999999999


Q ss_pred             HHHhhhCCCCCCCCCccccccccccccccChHHHHHH
Q 010517          171 WVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL  207 (508)
Q Consensus       171 ~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l  207 (508)
                      +++|+++|++.+.++..++++++.+.+.++.+.+..+
T Consensus       206 v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l  242 (253)
T 1yyh_A          206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL  242 (253)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999998886665543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-32  Score=259.05  Aligned_cols=211  Identities=18%  Similarity=0.199  Sum_probs=192.3

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~   92 (508)
                      +..+.++||+|+..|+.+.|+.|++.+.. ++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~   79 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDK--DDAGWSPLHI   79 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHc-CcHHHHHHHHHhCCCCCCc--CCCCCCHHHH
Confidence            45678999999999999999999997754 678899999999999998 9999999999999999988  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHH
Q 010517           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (508)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~  172 (508)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..++.++++
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  156 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMH-RAAAKGNLKMVH  156 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHH
T ss_pred             HHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999998  89999999999 999999999999


Q ss_pred             HhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhh
Q 010517          173 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (508)
Q Consensus       173 ~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~  240 (508)
                      +|+++|++++..+..+.++++.++..++...+..|+.        +++|  ++.+|..|+||+++|..
T Consensus       157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------~ga~--~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT--------QGAS--IYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH--------TTCC--SCCCCTTSCCHHHHSCH
T ss_pred             HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH--------CCCC--CCCCCCCCCCHHHHHHh
Confidence            9999999999999899999999998888665554443        3677  77889999999999964

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.7e-32  Score=256.83  Aligned_cols=192  Identities=19%  Similarity=0.081  Sum_probs=182.2

Q ss_pred             ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC-CCcccCCCCCCCcHHH
Q 010517           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPLH   91 (508)
Q Consensus        13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga-~~n~~~~d~~g~tpLh   91 (508)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++++ +++..  +..|.||||
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~   97 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPLI   97 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHBTTSCTTCC--CTTCCCHHH
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CCCCCcHHH
Confidence            488999999999999999999999999999999999999999999998 99999999999987 88887  889999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHH
Q 010517           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (508)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~  171 (508)
                      +|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v  174 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETA  174 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHTCHHHH
T ss_pred             HHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHH-HHHHcCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999  89999999999 99999999999


Q ss_pred             HHhhhCCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010517          172 VVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA  210 (508)
Q Consensus       172 ~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~  210 (508)
                      ++|+++|++.+..+..+.++++.+.+.++.+.+..|+..
T Consensus       175 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~  213 (223)
T 2f8y_A          175 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY  213 (223)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence            999999999999998999999999998887766655544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.2e-32  Score=259.25  Aligned_cols=186  Identities=22%  Similarity=0.206  Sum_probs=178.0

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp   89 (508)
                      .+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~  109 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GXDEIVKALLVKGAHVNAV--NQNGCTP  109 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc-CHHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            466789999999999999999999999999999999999999999999998 9999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHH
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK  169 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~  169 (508)
                      ||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+
T Consensus       110 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~  186 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLH-LACDEERVE  186 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHH-HHHHCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999  89999999999 999999999


Q ss_pred             HHHHhhhCCCCCCCCCccccccccccccccCh
Q 010517          170 IWVVVIPCGTANPSKPLRFELVIYPSLQDVQP  201 (508)
Q Consensus       170 i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~  201 (508)
                      ++++|+++|++++.++..+.++++.+.+....
T Consensus       187 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  218 (231)
T 3aji_A          187 EAKFLVTQGASIYIENKEEKTPLQVAKGGLGL  218 (231)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHH
Confidence            99999999999999998999999988765443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.1e-33  Score=282.52  Aligned_cols=230  Identities=16%  Similarity=0.140  Sum_probs=205.5

Q ss_pred             cCccccc-CCchHHHHHHHHcCCHHHHHHHH--------HcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCc
Q 010517            8 MNQHQQR-QSKDELLYQWVIAGDVDAIRALR--------SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN   78 (508)
Q Consensus         8 ~~~~~~~-~~g~t~L~~Aa~~g~~~~v~~Ll--------~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n   78 (508)
                      ..++.+| ..|.||||+|+..|+.++|++|+        +.|+++|.+|..|.||||+|+.. |+.++|++|+++|++++
T Consensus       115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~~~  193 (373)
T 2fo1_E          115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGADPT  193 (373)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSC
T ss_pred             ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHc-ChHHHHHHHHHCCCCCc
Confidence            4566777 78999999999999998887776        89999999999999999999998 99999999999999999


Q ss_pred             ccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC---CCccccCCCCCcHHHHHHHhC---CHHHHHHHHHcCCcccc-----
Q 010517           79 AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKG---HINVVRAIESHICYFCG-----  147 (508)
Q Consensus        79 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g---a~~~~~d~~g~TpLh~A~~~g---~~~~v~~Ll~~ga~~~~-----  147 (508)
                      .+  |..|.||||+|+..|+.+++++|++++   ++++..|..|.||||+|+..+   +.+++++|+++|++++.     
T Consensus       194 ~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~  271 (373)
T 2fo1_E          194 IY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR  271 (373)
T ss_dssp             CC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG
T ss_pred             cc--CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccc
Confidence            98  889999999999999999999999998   899999999999999999998   89999999999999871     


Q ss_pred             -cccccCCCCHHHHHHhhcCCHHHHHHhhhCC-CCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcce
Q 010517          148 -WLREFYGPSFLEALAPQLMSRKIWVVVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLT  225 (508)
Q Consensus       148 -~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~  225 (508)
                       ..+|..|.|||| +|+..|+.+++++|++++ ++++..+..+.++++.++..++...+..|+.        ++++  ++
T Consensus       272 ~~~~d~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~--------~gad--~~  340 (373)
T 2fo1_E          272 KDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ--------QGAS--VE  340 (373)
T ss_dssp             TSSSSCCCCCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH--------TTCC--SS
T ss_pred             cCcccccCCCHHH-HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH--------cCCC--cc
Confidence             125779999999 999999999999999886 9999999999999999999988766665544        3777  88


Q ss_pred             eccCCCcchhHhhhhcCCChhHHHHHH
Q 010517          226 IYDQATKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       226 ~~d~~~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      .+|..|+|++++|... +....++.|.
T Consensus       341 ~~d~~g~t~l~~A~~~-g~~~iv~~Ll  366 (373)
T 2fo1_E          341 AVDATDHTARQLAQAN-NHHNIVDIFD  366 (373)
T ss_dssp             CCCSSSCCHHHHHHHT-TCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHc-CCHHHHHHHH
Confidence            8999999999999864 5566666665

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-32  Score=284.27  Aligned_cols=230  Identities=20%  Similarity=0.148  Sum_probs=191.8

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      +.+++..+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. |+.+++++|+++|+++|.+  |..|
T Consensus         4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g   80 (437)
T 1n11_A            4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDD   80 (437)
T ss_dssp             -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTS
T ss_pred             CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCCCC--CCCC
Confidence            345677889999999999999999999999999999999999999999999998 9999999999999999988  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcC
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~  166 (508)
                      +||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++.+  ..+..|.|||| +|+..|
T Consensus        81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~-~A~~~g  157 (437)
T 1n11_A           81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLH-VAAKYG  157 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHH-HHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999988  78899999999 999999


Q ss_pred             CHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChh
Q 010517          167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKH  246 (508)
Q Consensus       167 ~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~  246 (508)
                      +.+++++|+++|++.+..+..+.++++.++..++...+..|+.        .+.+  +...+..|.|+|++|+. .+...
T Consensus       158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------~g~~--~~~~~~~g~t~L~~A~~-~~~~~  226 (437)
T 1n11_A          158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP--------RGGS--PHSPAWNGYTPLHIAAK-QNQVE  226 (437)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGG--------GTCC--SCCCCTTCCCHHHHHHH-TTCHH
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh--------CCCC--CCCcCCCCCCHHHHHHH-cCCHH
Confidence            9999999999999998888888899999988888655554332        2444  45566677778877764 34455


Q ss_pred             HHHHHHH
Q 010517          247 QLQWLDN  253 (508)
Q Consensus       247 ~l~~l~~  253 (508)
                      .++.|..
T Consensus       227 ~~~~Ll~  233 (437)
T 1n11_A          227 VARSLLQ  233 (437)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555553

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=9.2e-33  Score=267.83  Aligned_cols=185  Identities=21%  Similarity=0.139  Sum_probs=162.5

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCC-------------
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-------------   76 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~-------------   76 (508)
                      ++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++             
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQS  116 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC--------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhcc
Confidence            677899999999999999999999999999999999999999999999997 999999999998866             


Q ss_pred             ----------------------------------CcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCC-CCc
Q 010517           77 ----------------------------------INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-CHT  121 (508)
Q Consensus        77 ----------------------------------~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-g~T  121 (508)
                                                        ++.+  |..|+||||+|+..|+.+++++|+++|++++..+.. |.|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t  194 (282)
T 1oy3_D          117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE--NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT  194 (282)
T ss_dssp             ---------------------------CCCGGGGTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc--CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcC
Confidence                                              5555  789999999999999999999999999999999864 999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccC
Q 010517          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (508)
Q Consensus       122 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~  200 (508)
                      |||+|+..|+.+++++|+++|++++  .+|..|+|||| +|+..++.+++++|+++|++++.++..+.+++..+.....
T Consensus       195 pL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          195 PLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCc--ccccCCCCHHH-HHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            9999999999999999999999999  99999999999 9999999999999999999999999889888887765443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.8e-32  Score=262.65  Aligned_cols=226  Identities=21%  Similarity=0.174  Sum_probs=201.6

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (508)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A   93 (508)
                      .+|.|+||+|++.|+.++|++|+++|++++.. +..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A   79 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLR--KKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHH
Confidence            36899999999999999999999999999988 78899999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccccccc----------ccCCCCHHHHHHh
Q 010517           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR----------EFYGPSFLEALAP  163 (508)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~----------~~~g~tpL~~~A~  163 (508)
                      +..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  .+          +..|.|||| .|+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~~~~~~~~~~g~t~L~-~A~  156 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALM-DAA  156 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCCCCHHHHHTTCCCCCHHH-HHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc--cccccHHHHHhhccCCCcHHH-HHH
Confidence            99999999999999999999999999999999999999999999999999988  55          788999999 999


Q ss_pred             hcCCHHHHHHhhhC-CCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcC
Q 010517          164 QLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  242 (508)
Q Consensus       164 ~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~  242 (508)
                      ..++.+++++|+++ |.+++..+..+.++++.++..+....+..+++..+    ..+.+  ++.+|..|.||||+|... 
T Consensus       157 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll----~~g~~--~~~~~~~g~t~L~~A~~~-  229 (285)
T 1wdy_A          157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL----DHGAD--VNVRGERGKTPLILAVEK-  229 (285)
T ss_dssp             HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH----HTTCC--SSCCCTTSCCHHHHHHHT-
T ss_pred             HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHH----HcCCC--CCCcCCCCCcHHHHHHHc-
Confidence            99999999999987 99999999899999999988777533332222222    23667  788899999999999864 


Q ss_pred             CChhHHHHHHH
Q 010517          243 GDKHQLQWLDN  253 (508)
Q Consensus       243 ~~~~~l~~l~~  253 (508)
                      +....++.|+.
T Consensus       230 ~~~~~v~~Ll~  240 (285)
T 1wdy_A          230 KHLGLVQRLLE  240 (285)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCHHHHHHHHh
Confidence            56777777774

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4e-32  Score=256.85  Aligned_cols=198  Identities=21%  Similarity=0.231  Sum_probs=186.8

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcC-CCCcccCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGR   85 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~g-a~~n~~~~d~~   85 (508)
                      +.+++.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++| .+++..  +..
T Consensus        34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~  110 (237)
T 3b7b_A           34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNGQMDVNCQ--DDG  110 (237)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT-TCHHHHHHHHTTTCCCTTCC--CTT
T ss_pred             CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCC
Confidence            346677889999999999999999999999999999999999999999999998 9999999999999 889988  889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~  165 (508)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..
T Consensus       111 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~  187 (237)
T 3b7b_A          111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLH-IAARE  187 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010517          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA  210 (508)
Q Consensus       166 ~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~  210 (508)
                      ++.+++++|+++|++++.++..+.++++.+...++...+..+.+.
T Consensus       188 ~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~  232 (237)
T 3b7b_A          188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA  232 (237)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988887666665544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.7e-32  Score=258.38  Aligned_cols=189  Identities=20%  Similarity=0.169  Sum_probs=179.9

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC----CCcccCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINAYRP   82 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga----~~n~~~~   82 (508)
                      ..+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++++    +++..  
T Consensus        36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~--  112 (241)
T 1k1a_A           36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEAR--  112 (241)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCC--
T ss_pred             CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccccc--
Confidence            456778899999999999999999999999999999999999999999999998 99999999999998    78877  


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 010517           83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL  161 (508)
Q Consensus        83 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~  161 (508)
                      |..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +
T Consensus       113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~  189 (241)
T 1k1a_A          113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALH-S  189 (241)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-H
T ss_pred             CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-H
Confidence            8899999999999999999999999999999998 899999999999999999999999999999  89999999999 9


Q ss_pred             HhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccCh
Q 010517          162 APQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP  201 (508)
Q Consensus       162 A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~  201 (508)
                      |+..++.+++++|+++|++++.++..+.++++.+...+..
T Consensus       190 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  229 (241)
T 1k1a_A          190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI  229 (241)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcH
Confidence            9999999999999999999999999999999999877663

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7e-33  Score=267.86  Aligned_cols=184  Identities=20%  Similarity=0.176  Sum_probs=150.8

Q ss_pred             cccccCCchHHHHHHHHcCCHH-HHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517           10 QHQQRQSKDELLYQWVIAGDVD-AIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~-~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t   88 (508)
                      .+..+..|.||||+|+..++.+ ++++|++.|+++|.+|.+|+||||+|+.. |+.++|++|++.|++++.+  +..|.|
T Consensus        45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~~a~~~~~--~~~g~t  121 (269)
T 4b93_B           45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALH-GRADLIPLLLKHGANAGAR--NADQAV  121 (269)
T ss_dssp             ------------------------------CCCCTTCCCTTSCCHHHHHHHT-TCTTHHHHHHHTTCCTTCC--CTTCCC
T ss_pred             ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHhcCCCcCcc--CCCCCC
Confidence            4567888999999999888764 88999999999999999999999999998 9999999999999999998  889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCH
Q 010517           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  168 (508)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~  168 (508)
                      |||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..|+.
T Consensus       122 ~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh-~A~~~g~~  198 (269)
T 4b93_B          122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALH-EAVIEKHV  198 (269)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCH
T ss_pred             ccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHH-HHHHcCCH
Confidence            9999999999999999999999999999999999999999999999999999999999  89999999999 99999999


Q ss_pred             HHHHHhhhCCCCCCCCCcccccccccccccc
Q 010517          169 KIWVVVIPCGTANPSKPLRFELVIYPSLQDV  199 (508)
Q Consensus       169 ~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~  199 (508)
                      +++++|+++|++++.++..++++++.|.+.+
T Consensus       199 ~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence            9999999999999999999999999997654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=3.5e-32  Score=256.44  Aligned_cols=191  Identities=18%  Similarity=0.113  Sum_probs=176.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCC-----cccCCCCCCCcH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI-----NAYRPGGRGGTP   89 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~-----n~~~~d~~g~tp   89 (508)
                      .|+||||+|+..|+.++|++|++. |++++.+|..|+||||+|+.. |+.+++++|+++|+++     +.+  |..|+||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAPELVFEPMTSE--LYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGCCCCST--TTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCchhcccccccc--CCCCcCH
Confidence            589999999999999999999997 999999999999999999998 9999999999999987     444  7789999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCC-------------CCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCC
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANALVRND-------------DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPS  156 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-------------~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~t  156 (508)
                      ||+|+..|+.+++++|+++|++++..+.             .|.||||+|+..|+.+++++|+++|++++  .+|.+|.|
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t  156 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNT  156 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCC
Confidence            9999999999999999999999988765             79999999999999999999999999999  89999999


Q ss_pred             HHHHHHhhcCCHHHH----HHhhhCCCCC------CCCCccccccccccccccChHHHHHHHHhhh
Q 010517          157 FLEALAPQLMSRKIW----VVVIPCGTAN------PSKPLRFELVIYPSLQDVQPRAVIALWKAKI  212 (508)
Q Consensus       157 pL~~~A~~~~~~~i~----~~Ll~~g~~~------~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~  212 (508)
                      ||| +|+..++.+++    ++|+++|++.      +..+..+.++++.+++.++...+..|+....
T Consensus       157 ~L~-~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          157 VLH-ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK  221 (232)
T ss_dssp             HHH-HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHH-HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            999 99999999988    9999999987      4677789999999999999887777766543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.8e-32  Score=269.49  Aligned_cols=227  Identities=21%  Similarity=0.163  Sum_probs=192.8

Q ss_pred             ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccC----------
Q 010517           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYR----------   81 (508)
Q Consensus        13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~----------   81 (508)
                      .+.+|.|+||.|++.|++++|++||++|+|+|.++. .|+||||+|+.. |+.++|++||++|++++.++          
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            345689999999999999999999999999999876 599999999998 99999999999998776532          


Q ss_pred             ---------------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc----------CCCCCcHHHHHHHhC
Q 010517           82 ---------------------PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKG  130 (508)
Q Consensus        82 ---------------------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~----------d~~g~TpLh~A~~~g  130 (508)
                                           .|..|+||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence                                 2567899999999999999999999999988653          456899999999999


Q ss_pred             CHHHHHHHHH-cCCcccccccccCCCCHHHHHHhhcCC----HHHHHHhhhCCCCCCCCCccccccccccccccChHHHH
Q 010517          131 HINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (508)
Q Consensus       131 ~~~~v~~Ll~-~ga~~~~~~~~~~g~tpL~~~A~~~~~----~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~  205 (508)
                      +.++|++|++ .|++++  .+|..|.|+|+ .++..+.    ..++++|+++|++++.++..+.++++.++..+....+.
T Consensus       180 ~~~~v~~LL~~~gad~n--~~d~~g~t~l~-~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~  256 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVN--ACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ  256 (337)
T ss_dssp             CHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHhccCCCcC--ccCCCCCcHHH-HHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence            9999999995 589999  89999999999 5544333    46889999999999999989999999999988877666


Q ss_pred             HHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHHH
Q 010517          206 ALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN  253 (508)
Q Consensus       206 ~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~~  253 (508)
                      .|+..       .+.+  ++.+|..|+||||+|+.. +....++.|+.
T Consensus       257 ~Ll~~-------~~~~--vn~~d~~G~TpL~~A~~~-g~~~iv~~Ll~  294 (337)
T 4g8k_A          257 RLLEQ-------EHIE--INDTDSDGKTALLLAVEL-KLKKIAELLCK  294 (337)
T ss_dssp             HHHTS-------TTCC--TTCBCTTSCBHHHHHHHT-TCHHHHHHHHT
T ss_pred             HHHHh-------cCCc--ccCcCCCCCCHHHHHHHc-CCHHHHHHHHH
Confidence            54432       2566  888999999999999864 56666666663

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-32  Score=279.92  Aligned_cols=228  Identities=22%  Similarity=0.188  Sum_probs=193.7

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (508)
                      .+.+.++..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|+++|++++..  +..|.
T Consensus       170 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~  246 (437)
T 1n11_A          170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ-NQVEVARSLLQYGGSANAE--SVQGV  246 (437)
T ss_dssp             CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCC
Confidence            34566777888888888888888888888888888888888888888888887 8888888888888888887  77889


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~  167 (508)
                      ||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++  .++..|+|||| +|+..|+
T Consensus       247 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~  323 (437)
T 1n11_A          247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD--ATTRMGYTPLH-VASHYGN  323 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCSSCCCHHH-HHHHSSC
T ss_pred             CHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC--CCCCCCCCHHH-HHHHcCc
Confidence            99999999999999999999999999999999999999999999999999999999998  88999999999 9999999


Q ss_pred             HHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhH
Q 010517          168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQ  247 (508)
Q Consensus       168 ~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~  247 (508)
                      .+++++|+++|++++.++..+.++++.+++.++...+..|+.        ++++  ++.+|..|+||+++|... +....
T Consensus       324 ~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~--------~ga~--~~~~~~~g~t~l~~A~~~-g~~~~  392 (437)
T 1n11_A          324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK--------NGAS--PNEVSSDGTTPLAIAKRL-GYISV  392 (437)
T ss_dssp             SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------TTCC--SCCCCSSSCCHHHHHHHT-TCHHH
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH--------CcCC--CCCCCCCCCCHHHHHHHc-CcHHH
Confidence            999999999999999988889999999998888766655443        3777  778899999999998764 33444


Q ss_pred             HHHHH
Q 010517          248 LQWLD  252 (508)
Q Consensus       248 l~~l~  252 (508)
                      .+.|.
T Consensus       393 ~~~l~  397 (437)
T 1n11_A          393 TDVLK  397 (437)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2e-32  Score=268.16  Aligned_cols=224  Identities=20%  Similarity=0.200  Sum_probs=197.1

Q ss_pred             ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (508)
Q Consensus        13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~   92 (508)
                      .+..|.|+||+|+..|+.++|++||++|+++|..|..|.||||+|+.. |+.+++++|+++|++++..  |..|+||||+
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~  112 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHA  112 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcHHHH
Confidence            456789999999999999999999999999999999999999999998 9999999999999999998  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc-CCcccc------------------------
Q 010517           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH-ICYFCG------------------------  147 (508)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-ga~~~~------------------------  147 (508)
                      |+..|+.+++++|+++|++++..|..|.||||+|+..++.++++.|+.. +.+++.                        
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            9999999999999999999999999999999999999999999877653 343320                        


Q ss_pred             cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceec
Q 010517          148 WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIY  227 (508)
Q Consensus       148 ~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~  227 (508)
                      ...+..|.|||| +|+..|+.+++++|+++|++++..+..+.++++.++..++...+..|+.        +++|  ++.+
T Consensus       193 ~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~--------~gad--~~~~  261 (299)
T 1s70_B          193 VRHAKSGGTALH-VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE--------NLCD--MEAV  261 (299)
T ss_dssp             CCCTTTCCCHHH-HHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH--------TTCC--TTCC
T ss_pred             hhhcCCCCCHHH-HHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHH--------cCCC--CCCc
Confidence            134678999999 9999999999999999999999999999999999999998776665554        3677  7889


Q ss_pred             cCCCcchhHhhhhcCCChhHHHHHH
Q 010517          228 DQATKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       228 d~~~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      |..|+||+++|.+  .....+.++.
T Consensus       262 d~~g~t~l~~A~~--~~~~~l~~l~  284 (299)
T 1s70_B          262 NKVGQTAFDVADE--DILGYLEELQ  284 (299)
T ss_dssp             CTTSCCTTTSCCS--GGGHHHHHHH
T ss_pred             CCCCCCHHHHHHH--HHHHHHHHHH
Confidence            9999999999954  3344444444

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-31  Score=260.45  Aligned_cols=183  Identities=18%  Similarity=0.195  Sum_probs=174.7

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (508)
                      .+++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..   ..|.
T Consensus        83 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~---~~g~  158 (285)
T 3d9h_A           83 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQPE---SDLA  158 (285)
T ss_dssp             CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSSCS---CTTS
T ss_pred             CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CHHHHHHHHHHCCCCCCCC---CCCC
Confidence            46778899999999999999999999999999999999999999999999998 9999999999999999864   4699


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~  167 (508)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++   .+..|.|||| +|+..++
T Consensus       159 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~~~g~t~L~-~A~~~~~  234 (285)
T 3d9h_A          159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLH-AVVRTAS  234 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT---CCBTTBCHHH-HHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC---CCCCCCCHHH-HHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999998   3889999999 9999999


Q ss_pred             HHHHHHhhhCCCCCCCCCccccccccccccc
Q 010517          168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (508)
Q Consensus       168 ~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~  198 (508)
                      .+++++|+++|++++.++..+.++++.+...
T Consensus       235 ~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          235 EELACLLMDFGADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence            9999999999999999999999999999843

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.6e-32  Score=249.89  Aligned_cols=163  Identities=25%  Similarity=0.227  Sum_probs=158.1

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp   89 (508)
                      .|.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~  104 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKN-NRLGIAEKLLSKGSNVNTK--DFSGKTP  104 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTSCCH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcH
Confidence            567899999999999999999999999999999999999999999999998 9999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHH
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK  169 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~  169 (508)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~  181 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEA-SARIFGRQE  181 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCcHH
Confidence            999999999999999999999999999999999999999999999999999999999  99999999999 999999999


Q ss_pred             HHHHhhhCC
Q 010517          170 IWVVVIPCG  178 (508)
Q Consensus       170 i~~~Ll~~g  178 (508)
                      ++++|++++
T Consensus       182 ~v~~Ll~~~  190 (192)
T 2rfm_A          182 VIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999999865

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.98  E-value=1.5e-31  Score=251.21  Aligned_cols=182  Identities=19%  Similarity=0.126  Sum_probs=172.1

Q ss_pred             cccCCchHHHHHHHHcCCHHHHHHHHHcC--CCCCc-cCCCCChHHHHHHHhCCCHHHHHHHHHcC--CCCcccCCCCCC
Q 010517           12 QQRQSKDELLYQWVIAGDVDAIRALRSQG--ASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELG--ANINAYRPGGRG   86 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~-~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~g--a~~n~~~~d~~g   86 (508)
                      .+|..|.||||+|+..|+.+++++|+++|  .+++. .|..|.||||+|+.. |+.+++++|+++|  ++++..  |..|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~--~~~g  107 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKI--TNQG  107 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH-CCHHHHHHHHSSSSCCCTTCC--CTTC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccccC--CcCC
Confidence            47899999999999999999999999999  56666 789999999999998 9999999999999  888877  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC-CcccccccccCCCCHHHHHHhhc
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQL  165 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~g~tpL~~~A~~~  165 (508)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.| ++++  .+|..|+|||| +|+..
T Consensus       108 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~-~A~~~  184 (228)
T 2dzn_A          108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HALAE  184 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHHHT
T ss_pred             CCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHH-HHHHc
Confidence            99999999999999999999999999999999999999999999999999999999 9998  89999999999 99999


Q ss_pred             CCHHHHHHhh-hCCCCCCCCCcccccccccccccc
Q 010517          166 MSRKIWVVVI-PCGTANPSKPLRFELVIYPSLQDV  199 (508)
Q Consensus       166 ~~~~i~~~Ll-~~g~~~~~~~~~~~~~l~~a~~~~  199 (508)
                      ++.+++++|+ ++|++++..+..+.++++.+.+..
T Consensus       185 ~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             TCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             CCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence            9999999999 999999999999999999987653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=2.5e-31  Score=251.05  Aligned_cols=228  Identities=17%  Similarity=0.135  Sum_probs=204.7

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHH
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpL   90 (508)
                      +..|..|.|+||+|+..|+.+++++|++.|++++.+|..|.||||+|+.. |+.+++++|+++|++++... +..|.|||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~-~~~~~t~L   80 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYISKGAIVDQLG-GDLNSTPL   80 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCB-TTTTBCHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHh-CCHHHHHHHHHcCCcchhhc-CCcCCChh
Confidence            34688999999999999999999999999999999999999999999998 99999999999999998763 56699999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC-HH
Q 010517           91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS-RK  169 (508)
Q Consensus        91 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~-~~  169 (508)
                      |+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..++ .+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~  157 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLM-WAAYRTHSVD  157 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCSST
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHH-HHHHhCChHH
Confidence            99999999999999999999999999999999999999999999999999999999  89999999999 7775555 89


Q ss_pred             HHHHhhhCCCCCCCCCc-cccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHH
Q 010517          170 IWVVVIPCGTANPSKPL-RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQL  248 (508)
Q Consensus       170 i~~~Ll~~g~~~~~~~~-~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l  248 (508)
                      ++++|++.|.+++..+. .+.++++.++..+....+..|+..        +.+  ++..|..|+||+++|... +....+
T Consensus       158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------g~~--~~~~~~~g~t~l~~A~~~-~~~~~v  226 (240)
T 3eu9_A          158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--------GAN--VDAQNIKGESALDLAKQR-KNVWMI  226 (240)
T ss_dssp             THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--------TCC--TTCBCTTSCBHHHHHHHT-TCHHHH
T ss_pred             HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--------CCC--CCCcCCCCCCHHHHHHHc-CcHHHH
Confidence            99999999999998876 788999999998887766655543        667  778899999999999764 567777


Q ss_pred             HHHHHh
Q 010517          249 QWLDNA  254 (508)
Q Consensus       249 ~~l~~~  254 (508)
                      +.|...
T Consensus       227 ~~L~~~  232 (240)
T 3eu9_A          227 NHLQEA  232 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777643

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.98  E-value=2.4e-31  Score=238.44  Aligned_cols=159  Identities=25%  Similarity=0.349  Sum_probs=152.5

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A   93 (508)
                      ...+.++|++|++.|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAV--DHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence            45678999999999999999999999999999999999999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (508)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~  173 (508)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~  164 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFD-ISIDNGNEDLAEI  164 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999  89999999999 9999999999999


Q ss_pred             hhhCC
Q 010517          174 VIPCG  178 (508)
Q Consensus       174 Ll~~g  178 (508)
                      |++.|
T Consensus       165 L~~~G  169 (169)
T 2y1l_E          165 LQKLN  169 (169)
T ss_dssp             HHTC-
T ss_pred             HHHcC
Confidence            99876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=1.6e-32  Score=267.82  Aligned_cols=220  Identities=13%  Similarity=0.067  Sum_probs=191.0

Q ss_pred             CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t   88 (508)
                      .++.+|..|.||||+|+..|+.++|++|+++|++++.+|  |.||||+|+.. |+.+++++|+++|++++.+  |..|+|
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~t   97 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQF--DDKGNT   97 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTS-SSCHHHHHHHHTTCCTTCC--CTTSCC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCc
Confidence            578899999999999999999999999999999998884  99999999997 9999999999999999998  889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccCCCC-CcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDC-HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (508)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g-~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~  167 (508)
                      |||+|+..|+.+++++|+++|++++..|..| .||||+|+..|+.+++++|+++|++..  . ...|.|||| +|+..|+
T Consensus        98 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~-~~~g~t~L~-~A~~~g~  173 (285)
T 3kea_A           98 ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--D-LAILLSCIH-ITIKNGH  173 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--C-CSTHHHHHH-HHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--c-ccCCccHHH-HHHHcCh
Confidence            9999999999999999999999999999999 899999999999999999999998875  1 128999999 9999999


Q ss_pred             HHHHHHhhhCCCCCCCCCcccccc-ccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChh
Q 010517          168 RKIWVVVIPCGTANPSKPLRFELV-IYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKH  246 (508)
Q Consensus       168 ~~i~~~Ll~~g~~~~~~~~~~~~~-l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~  246 (508)
                      .+++++|+++|++++..+..+.++ ++.++..++...+..        +..+++|  ++..|.       . +...++..
T Consensus       174 ~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~--------Ll~~gad--~~~~~~-------~-a~~~~~~~  235 (285)
T 3kea_A          174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQA--------LFKYDIN--IYSANL-------E-NVLLDDAE  235 (285)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHH--------HTTSCBC--STTTTG-------G-GGTTTCHH
T ss_pred             HHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHH--------HHHcCCC--CCCCCh-------h-hhhcCCHH
Confidence            999999999999999999888887 899988887544433        3344777  544442       1 12345666


Q ss_pred             HHHHHHHhh
Q 010517          247 QLQWLDNAC  255 (508)
Q Consensus       247 ~l~~l~~~~  255 (508)
                      .++.|...-
T Consensus       236 iv~~Ll~~g  244 (285)
T 3kea_A          236 IAKMIIEKH  244 (285)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcC
Confidence            677776443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2e-31  Score=236.74  Aligned_cols=159  Identities=22%  Similarity=0.290  Sum_probs=150.5

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHH
Q 010517           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (508)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~   94 (508)
                      +...|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.  |+.+++++|+++|++++.+  |..|+||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL--GNPEIARRLLLRGANPDLK--DRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS--SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc--CcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH
Confidence            456899999999999999999999999999999999999999885  8999999999999999998  889999999999


Q ss_pred             HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc-ccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY-FCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (508)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~g~tpL~~~A~~~~~~~i~~~  173 (508)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ ++  .+|..|.|||| +|+..++.+++++
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~  155 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSL  155 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 47  89999999999 9999999999999


Q ss_pred             hhhCCCC
Q 010517          174 VIPCGTA  180 (508)
Q Consensus       174 Ll~~g~~  180 (508)
                      |+++|++
T Consensus       156 Ll~~GAd  162 (162)
T 1ihb_A          156 MQANGAG  162 (162)
T ss_dssp             HHHTC--
T ss_pred             HHHhCCC
Confidence            9999985

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=4.5e-31  Score=263.86  Aligned_cols=229  Identities=19%  Similarity=0.157  Sum_probs=203.7

Q ss_pred             CcccccCCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (508)
                      +.+..+..|.++||.|+..|+.+.|+.|+.. +.+++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+
T Consensus        16 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~   92 (351)
T 3utm_A           16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY-NRVRIVQLLLQHGADVHAK--DKGGL   92 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCC
T ss_pred             eeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCC
Confidence            3455677899999999999999999988875 889999999999999999998 9999999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccccccc-----------------
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR-----------------  150 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~-----------------  150 (508)
                      ||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  ..                 
T Consensus        93 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~~~l~~a~~~~~~  170 (351)
T 3utm_A           93 VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT--LVNCHGKSAVDMAPTPELR  170 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHCSSHHHH
T ss_pred             cHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCcchHHHhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999876  33                 


Q ss_pred             -------------------------------------ccCCCCHHHHHHhhc---CCHHHHHHhhhCCCCCCCCCccccc
Q 010517          151 -------------------------------------EFYGPSFLEALAPQL---MSRKIWVVVIPCGTANPSKPLRFEL  190 (508)
Q Consensus       151 -------------------------------------~~~g~tpL~~~A~~~---~~~~i~~~Ll~~g~~~~~~~~~~~~  190 (508)
                                                           +..|.|||| +|+..   +..+++++|+++|++++..+..+.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~-~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  249 (351)
T 3utm_A          171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH-CAVASLHPKRKQVAELLLRKGANVNEKNKDFMT  249 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHH-HHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             HHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHH-HHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCC
Confidence                                                 356789999 88888   5589999999999999999999999


Q ss_pred             cccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHHHh
Q 010517          191 VIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNA  254 (508)
Q Consensus       191 ~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~~~  254 (508)
                      +++.++..++...+..|+..        +.+  ++.+|..|+||||+|... +....++.|+..
T Consensus       250 ~L~~A~~~g~~~~v~~Ll~~--------ga~--~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~  302 (351)
T 3utm_A          250 PLHVAAERAHNDVMEVLHKH--------GAK--MNALDSLGQTALHRAALA-GHLQTCRLLLSY  302 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT--------TCC--TTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHC--------CCC--CCCcCCCCCCHHHHHHHc-CcHHHHHHHHHc
Confidence            99999999987666655443        677  888999999999999864 566677777643

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.6e-31  Score=238.79  Aligned_cols=160  Identities=23%  Similarity=0.231  Sum_probs=155.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~   95 (508)
                      .|.||||+|+..|+.++|++|++.|.+++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQLL--GKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHH
Confidence            578999999999999999999999999999999999999999998 9999999999999999998  8899999999999


Q ss_pred             cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (508)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll  175 (508)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMD-LAVALGYRSVQQVIE  155 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999  89999999999 999999999999999


Q ss_pred             hCCCCC
Q 010517          176 PCGTAN  181 (508)
Q Consensus       176 ~~g~~~  181 (508)
                      +++.+.
T Consensus       156 ~~~~~~  161 (167)
T 3v31_A          156 SHLLKL  161 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=1.7e-31  Score=269.41  Aligned_cols=226  Identities=17%  Similarity=0.148  Sum_probs=198.4

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHc----CCCCcc---
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA---   79 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~----ga~~n~---   79 (508)
                      +.+++.+|..|.||||+|+..|+.++|++|+++|++++.  .+|.||||+|+.. |+.+++++|+++    |++++.   
T Consensus        43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~  119 (364)
T 3ljn_A           43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLLN  119 (364)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT-TCHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc-CCHHHHHHHHHhccccCCCHHHHHh
Confidence            356778899999999999999999999999999997644  5799999999998 999999999999    888876   


Q ss_pred             --------------cCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q 010517           80 --------------YRPGGRGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC  143 (508)
Q Consensus        80 --------------~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  143 (508)
                                    .  |..|.||||+|+..|  +.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus       120 ~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~  197 (364)
T 3ljn_A          120 ECDEREVNEIGSHVK--HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP  197 (364)
T ss_dssp             CCCCCCEEEETTEEE--EESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred             hcchHhhhhhccccC--CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                          6  778999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             c-----ccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhh----cC
Q 010517          144 Y-----FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI----DE  214 (508)
Q Consensus       144 ~-----~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~----~~  214 (508)
                      +     ++  .+|..|.|||| +|+..|+.+++++|+++|++++..+..+.++++.++..++...+..|+...-    ..
T Consensus       198 ~~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  274 (364)
T 3ljn_A          198 SKSSLRLD--YANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA  274 (364)
T ss_dssp             CSSSCCTT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHT
T ss_pred             cccccccc--ccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhc
Confidence            9     88  89999999999 9999999999999999999999999999999999999999888877765421    11


Q ss_pred             CCCCCCCCcceeccCCCcchhHhhhhcC
Q 010517          215 PKFHQPDPSLTIYDQATKIRYKFASANE  242 (508)
Q Consensus       215 ~~~~~~d~~i~~~d~~~~t~l~~a~~~~  242 (508)
                      ...+...  ....+..+.++++.++...
T Consensus       275 ~~~~~~~--~~~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          275 CPYHNGT--TVLPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             CTTBSSS--SBCGGGCCCCTTSCSSCCH
T ss_pred             CcccCcc--cccccccccccchhhhhcc
Confidence            1122222  3345777888888877543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=7.4e-31  Score=241.60  Aligned_cols=188  Identities=21%  Similarity=0.195  Sum_probs=173.3

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~   92 (508)
                      +..+.|+||+|+..|+.+.|+.||+.+. +++.+|.+|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDRGADINLQ--NSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence            3568899999999999999999999876 9999999999999999998 9999999999999999998  8899999999


Q ss_pred             HHHcCCHHHHHHHH-HCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC-CcccccccccCCCCHHHHHHhhcCC---
Q 010517           93 AAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMS---  167 (508)
Q Consensus        93 A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~g~tpL~~~A~~~~~---  167 (508)
                      |+..|+.+++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++  .+|..|.|||| +|+..+.   
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~-~A~~~~~~~~  155 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALI-EAVGLREGNQ  155 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHH-HHHHSSCCSH
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHH-HHHHhccchh
Confidence            99999999999999 667899999999999999999999999999999999 8888  89999999999 8988887   


Q ss_pred             --HHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHH
Q 010517          168 --RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL  207 (508)
Q Consensus       168 --~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l  207 (508)
                        .+++++|+++|++++..+..+.++++.+++.++.+.+..|
T Consensus       156 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L  197 (201)
T 3hra_A          156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL  197 (201)
T ss_dssp             HHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence              9999999999999999998999999999988886665543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.3e-31  Score=239.09  Aligned_cols=164  Identities=23%  Similarity=0.206  Sum_probs=154.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~   95 (508)
                      +.||||+|+..|+.++|+.|++.+.+ ++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHIL--AKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCchhh--cccCCCHHHHHHH
Confidence            46899999999999999999999987 899999999999999998 9999999999999999998  8899999999999


Q ss_pred             cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (508)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll  175 (508)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~  155 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMD-LAVALGYRKVQQVIE  155 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHhCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999  89999999999 999999999999999


Q ss_pred             hCCCCCCCCCc
Q 010517          176 PCGTANPSKPL  186 (508)
Q Consensus       176 ~~g~~~~~~~~  186 (508)
                      +++++....+.
T Consensus       156 ~~~~~~~~~~~  166 (172)
T 3v30_A          156 NHILKLFQSNL  166 (172)
T ss_dssp             HHHHHHSCC--
T ss_pred             HHHHHHhcccC
Confidence            99987765553

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.1e-31  Score=252.02  Aligned_cols=168  Identities=24%  Similarity=0.180  Sum_probs=160.1

Q ss_pred             CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCC------CcccCC
Q 010517            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN------INAYRP   82 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~------~n~~~~   82 (508)
                      .++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++      ++..  
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~--  113 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKAT--  113 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCC--
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhHHHHhhcc--
Confidence            5678899999999999999999999999999999999999999999999998 999999999999986      3444  


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCC-CCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 010517           83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL  161 (508)
Q Consensus        83 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~  161 (508)
                      +..|+||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +
T Consensus       114 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~  190 (236)
T 1ikn_D          114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-L  190 (236)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-G
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH-H
Confidence            78899999999999999999999999999999998 99999999999999999999999999999  99999999999 9


Q ss_pred             HhhcCCHHHHHHhhhCCCCCC
Q 010517          162 APQLMSRKIWVVVIPCGTANP  182 (508)
Q Consensus       162 A~~~~~~~i~~~Ll~~g~~~~  182 (508)
                      |+..++.+++++|+++|++..
T Consensus       191 A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          191 TWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHccCchHHHHHHHHcchhhh
Confidence            999999999999999999764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=8.4e-31  Score=241.22  Aligned_cols=164  Identities=20%  Similarity=0.218  Sum_probs=157.4

Q ss_pred             CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHH-HcCCCCcccCCCCCCC
Q 010517            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRGG   87 (508)
Q Consensus         9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll-~~ga~~n~~~~d~~g~   87 (508)
                      +++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+ ..+++++..  |..|.
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~g~  107 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKH--NRYGG  107 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCC--CTTSC
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhccCcccccc--cCCCC
Confidence            6778899999999999999999999999999999999999999999999998 9999999999 667799988  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhCC-----HHHHHHHHHcCCcccccccccCCCCHHHHH
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGH-----INVVRAIESHICYFCGWLREFYGPSFLEAL  161 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpLh~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~  161 (508)
                      ||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++     .+++++|+++|++++  .+|..|.|||| +
T Consensus       108 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~  184 (201)
T 3hra_A          108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRTAMD-Y  184 (201)
T ss_dssp             CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCCHHH-H
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCCHHH-H
Confidence            9999999999999999999999 9999999999999999999998     999999999999999  99999999999 9


Q ss_pred             HhhcCCHHHHHHhhhCC
Q 010517          162 APQLMSRKIWVVVIPCG  178 (508)
Q Consensus       162 A~~~~~~~i~~~Ll~~g  178 (508)
                      |+..++.+++++|+++|
T Consensus       185 A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          185 ANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTCHHHHHHHHTCC
T ss_pred             HHHcCCHhHHHHHHhcC
Confidence            99999999999999886

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=3.2e-31  Score=268.67  Aligned_cols=196  Identities=15%  Similarity=0.079  Sum_probs=183.2

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcC---CCCcccCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG---ANINAYRPG   83 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~g---a~~n~~~~d   83 (508)
                      +.++|.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++++   ++++..  |
T Consensus       156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~--d  232 (373)
T 2fo1_E          156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEEL--D  232 (373)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCC--C
T ss_pred             CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCccccChhhc--C
Confidence            456788899999999999999999999999999999999999999999999998 9999999999998   899988  8


Q ss_pred             CCCCcHHHHHHHcC---CHHHHHHHHHCCCCccc--------cCCCCCcHHHHHHHhCCHHHHHHHHHcC-Ccccccccc
Q 010517           84 GRGGTPLHHAAKRG---LEPTVRLLLSCGANALV--------RNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLRE  151 (508)
Q Consensus        84 ~~g~tpLh~A~~~g---~~~~v~~Ll~~ga~~~~--------~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~  151 (508)
                      ..|+||||+|+..+   +.+++++|+++|++++.        .|..|.||||+|+..|+.+++++|++++ ++++  .+|
T Consensus       233 ~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n--~~d  310 (373)
T 2fo1_E          233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQD  310 (373)
T ss_dssp             TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCC
T ss_pred             CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc--CcC
Confidence            89999999999998   89999999999999886        6779999999999999999999999886 9999  999


Q ss_pred             cCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010517          152 FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (508)
Q Consensus       152 ~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~  208 (508)
                      .+|.|||| +|+..|+.+++++|+++|++++..+..+.++++.++..++...+..|+
T Consensus       311 ~~g~TpL~-~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll  366 (373)
T 2fo1_E          311 EDGKTPIM-LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD  366 (373)
T ss_dssp             TTCCCHHH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCHHH-HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999 999999999999999999999999999999999999988866655443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=3.2e-30  Score=241.40  Aligned_cols=169  Identities=22%  Similarity=0.209  Sum_probs=162.2

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR   85 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~   85 (508)
                      ..+.+.+|..|.||||+|+..|+.+++++|++++. +++.++..|.||||+|+.. |+.+++++|+++|++++.+  |..
T Consensus        48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~  124 (223)
T 2f8y_A           48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAV--DDL  124 (223)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTT
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh-CcHHHHHHHHHcCCCCcCc--CCC
Confidence            34567789999999999999999999999999987 8999999999999999998 9999999999999999998  889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~  165 (508)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||+ +|+..
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~  201 (223)
T 2f8y_A          125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRD-IAQER  201 (223)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHH-HHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHhhhCCCCC
Q 010517          166 MSRKIWVVVIPCGTAN  181 (508)
Q Consensus       166 ~~~~i~~~Ll~~g~~~  181 (508)
                      ++.+++++|+++|+..
T Consensus       202 ~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          202 MHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             TCHHHHHHHHHTTCSS
T ss_pred             cchHHHHHHHHcCCCc
Confidence            9999999999999865

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=3e-30  Score=227.22  Aligned_cols=151  Identities=24%  Similarity=0.258  Sum_probs=146.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHc
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~   96 (508)
                      ..++||+|+..|+.++|++|+++|++++ .|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHc
Confidence            5799999999999999999999999886 588999999999998 9999999999999999998  88999999999999


Q ss_pred             CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHh
Q 010517           97 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (508)
Q Consensus        97 g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~L  174 (508)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..|+.+++++|
T Consensus        78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999  89999999999 99999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=1.1e-30  Score=232.87  Aligned_cols=160  Identities=24%  Similarity=0.241  Sum_probs=149.5

Q ss_pred             ccCCchHHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517           13 QRQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (508)
Q Consensus        13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh   91 (508)
                      .|..|.|+||+|++.|+.++|+.|++ .+.+++..+..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY-NRVSVVEYLLQHGADVHAK--DKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCcc--CCCCCCHHH
Confidence            47789999999999999999999999 5567888899999999999998 9999999999999999998  889999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHH
Q 010517           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (508)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~  171 (508)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|.+|.|||| +|.. ++.+++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~a~~-~~~~i~  156 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLD-LVKD-GDTDIQ  156 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGG-GSCT-TCHHHH
T ss_pred             HHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhH-hHhc-CChHHH
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999 7766 899999


Q ss_pred             HHhhhCCC
Q 010517          172 VVVIPCGT  179 (508)
Q Consensus       172 ~~Ll~~g~  179 (508)
                      ++|+++|+
T Consensus       157 ~~L~~~gA  164 (165)
T 3twr_A          157 DLLRGDAA  164 (165)
T ss_dssp             HHHHTC--
T ss_pred             HHHhhccc
Confidence            99999885

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.2e-30  Score=236.00  Aligned_cols=166  Identities=23%  Similarity=0.251  Sum_probs=156.3

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517           15 QSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (508)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A   93 (508)
                      ..+.++||.|+..|+.++|++|++. +.+++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A   79 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-GRSAVVEMLIMRGARINVM--NRGDDTPLHLA   79 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence            4578999999999999999999998 678999999999999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (508)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~  173 (508)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||+ +|+..++.+++++
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~~~~  156 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVD-KAKAPLRELLRER  156 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGG-GSCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHH-HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999  99999999999 9999999999999


Q ss_pred             hhhCCCCCCCCCc
Q 010517          174 VIPCGTANPSKPL  186 (508)
Q Consensus       174 Ll~~g~~~~~~~~  186 (508)
                      |+++|++.+..+.
T Consensus       157 L~~~g~~~~~~~~  169 (179)
T 3f6q_A          157 AEKMGQNLNRIPY  169 (179)
T ss_dssp             HHHTTCCCSCBCC
T ss_pred             HHHhhcCcccCCc
Confidence            9999999977653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=3.4e-31  Score=253.73  Aligned_cols=191  Identities=16%  Similarity=0.136  Sum_probs=142.8

Q ss_pred             chHHHHHHHHcCCHH----HHHHHHHcCCCCCc----cCCCCChHHHHHHHh--CCCHHHHHHHHHcCCCCccc------
Q 010517           17 KDELLYQWVIAGDVD----AIRALRSQGASLEW----MDKEGKTPLIVACMD--SGLINVAKTLIELGANINAY------   80 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~----~v~~Ll~~g~~~~~----~d~~G~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~n~~------   80 (508)
                      |+||||+|+..|+.+    ++++|+++|++++.    +|..|.||||+|+..  .|+.+++++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            678888888888876    55666667888877    777888888888762  16778888888877766532      


Q ss_pred             ---CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCC-------------CCcHHHHHHHhCCHHHHHHHHH---c
Q 010517           81 ---RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-------------CHTALGVARIKGHINVVRAIES---H  141 (508)
Q Consensus        81 ---~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-------------g~TpLh~A~~~g~~~~v~~Ll~---~  141 (508)
                         +.|..|+||||+|+..|+.+++++|+++|++++..|..             |.||||+|+..|+.+++++|++   .
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence               12456788888888888888888888888888777765             7888888888888888888888   7


Q ss_pred             CCcccccccccCCCCHHHHHHhh--cCCHH-------HHHHhhhCCCCC-------CCCCccccccccccccccChHHHH
Q 010517          142 ICYFCGWLREFYGPSFLEALAPQ--LMSRK-------IWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQPRAVI  205 (508)
Q Consensus       142 ga~~~~~~~~~~g~tpL~~~A~~--~~~~~-------i~~~Ll~~g~~~-------~~~~~~~~~~l~~a~~~~~~~~v~  205 (508)
                      |++++  .+|.+|+|||| +|+.  .++.+       ++++|+++|+++       +.++..+.++++.++..++...+.
T Consensus       162 ga~~n--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          162 PASLE--ATDSLGNTVLH-ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             CCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCcC--ccCCCCCCHHH-HHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence            78877  77788888888 7776  66776       888888888777       667777778888877777766665


Q ss_pred             HHHHh
Q 010517          206 ALWKA  210 (508)
Q Consensus       206 ~l~~~  210 (508)
                      .|+..
T Consensus       239 ~Ll~~  243 (256)
T 2etb_A          239 HILQR  243 (256)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            55443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1.8e-30  Score=254.31  Aligned_cols=186  Identities=22%  Similarity=0.224  Sum_probs=172.1

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      +.+++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|
T Consensus        63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g  139 (299)
T 1s70_B           63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAV--NSEG  139 (299)
T ss_dssp             CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCCc--CCCC
Confidence            346777899999999999999999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCCcc--------------------------ccCCCCCcHHHHHHHhCCHHHHHHHH
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSC-GANAL--------------------------VRNDDCHTALGVARIKGHINVVRAIE  139 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~-ga~~~--------------------------~~d~~g~TpLh~A~~~g~~~~v~~Ll  139 (508)
                      .||||+|+..++.++++.|+.. +.+++                          ..+..|.||||+|+..|+.+++++|+
T Consensus       140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  219 (299)
T 1s70_B          140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI  219 (299)
T ss_dssp             CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence            9999999999999999877753 44443                          35678999999999999999999999


Q ss_pred             HcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccc
Q 010517          140 SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (508)
Q Consensus       140 ~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~  198 (508)
                      ++|++++  .+|..|.|||| +|+..|+.+++++|+++|++++..+..+.++++.+.+.
T Consensus       220 ~~g~d~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          220 QARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             TTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             HcCCCCC--CcCCCCCcHHH-HHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence            9999999  99999999999 99999999999999999999999999999999998653

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.8e-30  Score=232.72  Aligned_cols=137  Identities=33%  Similarity=0.462  Sum_probs=128.8

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      +.++|.+|..|.||||+|+..++.+++++|+++|++++.+|.+|+||||+|+.. |+.++|++|+++|+++|.+  |..|
T Consensus        27 Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gadvn~~--d~~G  103 (169)
T 4gpm_A           27 GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDG  103 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCC
Confidence            457788999999999999999999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  146 (508)
                      +||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++.
T Consensus       104 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          104 RTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            999999999999999999999999999999999999999999999999999999999986

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=5.3e-31  Score=252.44  Aligned_cols=168  Identities=17%  Similarity=0.107  Sum_probs=155.8

Q ss_pred             cCccc----ccCCchHHHHHHHHc---CCHHHHHHHHHcCCCCCcc-----------CCCCChHHHHHHHhCCCHHHHHH
Q 010517            8 MNQHQ----QRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAKT   69 (508)
Q Consensus         8 ~~~~~----~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~-----------d~~G~TpLh~Aa~~~g~~~~v~~   69 (508)
                      .+++.    +|..|.||||+|+..   |+.++|++|+++|++++..           |..|.||||+|+.. |+.+++++
T Consensus        30 ~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~  108 (256)
T 2etb_A           30 KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKL  108 (256)
T ss_dssp             CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT-TCHHHHHH
T ss_pred             CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc-CCHHHHHH
Confidence            45555    799999999999999   9999999999999887643           47899999999998 99999999


Q ss_pred             HHHcCCCCcccCCCCC-------------CCcHHHHHHHcCCHHHHHHHHH---CCCCccccCCCCCcHHHHHHH--hCC
Q 010517           70 LIELGANINAYRPGGR-------------GGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARI--KGH  131 (508)
Q Consensus        70 Ll~~ga~~n~~~~d~~-------------g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpLh~A~~--~g~  131 (508)
                      |+++|++++.+  |..             |+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  .++
T Consensus       109 Ll~~ga~~~~~--~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~  186 (256)
T 2etb_A          109 LVENGADVHLR--ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS  186 (256)
T ss_dssp             HHHTTCCTTCC--CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSC
T ss_pred             HHHcCCCCCcc--cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCC
Confidence            99999999998  554             9999999999999999999999   999999999999999999999  888


Q ss_pred             HH-------HHHHHHHcCCcc-------cccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCC
Q 010517          132 IN-------VVRAIESHICYF-------CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (508)
Q Consensus       132 ~~-------~v~~Ll~~ga~~-------~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~  181 (508)
                      .+       ++++|+++|+++       +  .+|..|+|||| +|+..|+.+++++|+++|.+.
T Consensus       187 ~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          187 PENSALVIHMYDGLLQMGARLCPTVQLEE--ISNHQGLTPLK-LAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCGGG--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHcCCCccccccccc--ccCCCCCCHHH-HHHHhCCHHHHHHHHhCCCCC
Confidence            88       999999999999       7  89999999999 999999999999999998754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=7.3e-31  Score=254.04  Aligned_cols=202  Identities=15%  Similarity=0.166  Sum_probs=169.2

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHH----cCCCCC----ccCCCCChHHHHHHHh--CCCHHHHHHHHHcCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRS----QGASLE----WMDKEGKTPLIVACMD--SGLINVAKTLIELGANI   77 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~----~~d~~G~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~   77 (508)
                      ...+..|..|.|+||+|+..|+.++|+.||+    .+++++    ..|..|.||||+|+..  .|+.+++++|+++|+++
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            3456678999999999999999998888887    566665    4588999999999962  38899999999998653


Q ss_pred             -------c--ccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCC--------------CCCcHHHHHHHhCCHHH
Q 010517           78 -------N--AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND--------------DCHTALGVARIKGHINV  134 (508)
Q Consensus        78 -------n--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--------------~g~TpLh~A~~~g~~~~  134 (508)
                             +  ..+.|..|+||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..|+.++
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                   2  222367899999999999999999999999999999887              79999999999999999


Q ss_pred             HHHHHH---cCCcccccccccCCCCHHHHHHhhcCC---------HHHHHHhhhCCCCCC-------CCCcccccccccc
Q 010517          135 VRAIES---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTANP-------SKPLRFELVIYPS  195 (508)
Q Consensus       135 v~~Ll~---~ga~~~~~~~~~~g~tpL~~~A~~~~~---------~~i~~~Ll~~g~~~~-------~~~~~~~~~l~~a  195 (508)
                      +++|++   .|++++  .+|.+|+|||| +|+..++         .+++++|+++|++++       ..+..+.++++.+
T Consensus       164 v~~Ll~~~~~gad~~--~~d~~g~tpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          164 VKFLLQNSWQPADIS--ARDSVGNTVLH-ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHhcccCCCCce--eeCCCCCcHHH-HHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            999999   899999  89999999999 8998888         799999999999886       3777889999999


Q ss_pred             ccccChHHHHHHHHhhh
Q 010517          196 LQDVQPRAVIALWKAKI  212 (508)
Q Consensus       196 ~~~~~~~~v~~l~~~~~  212 (508)
                      +..++...+..|+....
T Consensus       241 ~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          241 ASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HHTTCHHHHHHHHHHHT
T ss_pred             HHhChHHHHHHHHHCCC
Confidence            99999887777776654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=251.39  Aligned_cols=163  Identities=21%  Similarity=0.262  Sum_probs=156.1

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHH-----HhCCCHHHHHHHHHcCCCCcccCCC
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVAC-----MDSGLINVAKTLIELGANINAYRPG   83 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpLh~Aa-----~~~g~~~~v~~Ll~~ga~~n~~~~d   83 (508)
                      +|.+|.+|.||||+|+..|+.++|++||++|+ +++..|..|.||||+|+     .. ++.+++++|++.|.+++..  |
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~-~~~~~v~~Ll~~g~~~~~~--~  180 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ-DDIETVLQLFRLGNINAKA--S  180 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH-HHHHHHHHHHHHSCTTCCC--T
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh-hhHHHHHHHHHcCCCcccc--C
Confidence            67889999999999999999999999999998 99999999999999999     55 7899999999999998887  7


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH-cCCcccccccccCCCCHHHHHH
Q 010517           84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALA  162 (508)
Q Consensus        84 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~g~tpL~~~A  162 (508)
                      ..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++  .+|.+|.|||| +|
T Consensus       181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~-~A  257 (276)
T 4hbd_A          181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALM-VA  257 (276)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHH-HH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHH-HH
Confidence            899999999999999999999999999999999999999999999999999999999 899999  99999999999 99


Q ss_pred             hhcCCHHHHHHhhhCC
Q 010517          163 PQLMSRKIWVVVIPCG  178 (508)
Q Consensus       163 ~~~~~~~i~~~Ll~~g  178 (508)
                      +..|+.+++++|+++.
T Consensus       258 ~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          258 LDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHTCHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHhcc
Confidence            9999999999999875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=9.9e-30  Score=224.39  Aligned_cols=154  Identities=27%  Similarity=0.322  Sum_probs=147.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~   94 (508)
                      .|.|+||+|+..|+.+++++|++. +.+++.+|..|.||||+ +.. |+.+++++|+++|++++.+  |..|+||||+|+
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~   76 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMF-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAA   76 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHc-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHH
Confidence            367999999999999999999998 44899999999999999 877 9999999999999999998  889999999999


Q ss_pred             HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHh
Q 010517           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (508)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~L  174 (508)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. ++++  .+|.+|.|||| +|+..++.+++++|
T Consensus        77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~-~A~~~~~~~~v~~L  152 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLE-LALQRGAQDLVDIL  152 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHH-HHHHSCCHHHHHHH
T ss_pred             HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHH-HHHHcCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 9998  89999999999 99999999999999


Q ss_pred             hhC
Q 010517          175 IPC  177 (508)
Q Consensus       175 l~~  177 (508)
                      +++
T Consensus       153 l~~  155 (156)
T 1bd8_A          153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=239.04  Aligned_cols=197  Identities=19%  Similarity=0.204  Sum_probs=182.5

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      .+.+.++..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus        33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g  109 (240)
T 3eu9_A           33 YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADPSLI--DGEG  109 (240)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc-CCHHHHHHHHHcCCCCccc--CCCC
Confidence            56677889999999999999999999999999999876654 599999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC-HHHHHHHHHcCCccccccccc-CCCCHHHHHHhh
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESHICYFCGWLREF-YGPSFLEALAPQ  164 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~-~~~v~~Ll~~ga~~~~~~~~~-~g~tpL~~~A~~  164 (508)
                      .||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++ .+++++|++.|++++  ..+. .|.|||| +|+.
T Consensus       110 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~--~~~~~~g~t~L~-~A~~  186 (240)
T 3eu9_A          110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN--LGDKYHKNTALH-WAVL  186 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT--CCCTTTCCCHHH-HHHH
T ss_pred             CCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc--hhhccCCCcHHH-HHHH
Confidence            999999999999999999999999999999999999999997776 899999999999999  7776 8999999 9999


Q ss_pred             cCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010517          165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA  210 (508)
Q Consensus       165 ~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~  210 (508)
                      .++.+++++|+++|++++..+..+.++++.+.+.++...+..|+..
T Consensus       187 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~  232 (240)
T 3eu9_A          187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA  232 (240)
T ss_dssp             HTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999999999999998999999999999887777665544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=3.8e-29  Score=249.52  Aligned_cols=225  Identities=20%  Similarity=0.100  Sum_probs=191.0

Q ss_pred             cCcccccC-CchHHHHHHHHcCCHHHHHHHHHcCCCC---------------------------------CccCCCCChH
Q 010517            8 MNQHQQRQ-SKDELLYQWVIAGDVDAIRALRSQGASL---------------------------------EWMDKEGKTP   53 (508)
Q Consensus         8 ~~~~~~~~-~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---------------------------------~~~d~~G~Tp   53 (508)
                      .++|.++. .|.||||+|+..|+.++|++||++|+++                                 +.+|..|.||
T Consensus        49 advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~  128 (337)
T 4g8k_A           49 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTA  128 (337)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBH
T ss_pred             CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCH
Confidence            45666654 5999999999999999999999998765                                 4567789999


Q ss_pred             HHHHHHhCCCHHHHHHHHHcCCCCcccC--------CCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCcHHH
Q 010517           54 LIVACMDSGLINVAKTLIELGANINAYR--------PGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALG  124 (508)
Q Consensus        54 Lh~Aa~~~g~~~~v~~Ll~~ga~~n~~~--------~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpLh  124 (508)
                      ||+|+.. |+.+++++|+++|++++...        .+..|.||||+|+..|+.++|++||+ .|++++.+|..|.|+||
T Consensus       129 l~~A~~~-~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~  207 (337)
T 4g8k_A          129 FMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI  207 (337)
T ss_dssp             HHHHHHT-TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             HHHHHHc-CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHH
Confidence            9999998 99999999999999998652        14468999999999999999999995 69999999999999999


Q ss_pred             HHHHhCC----HHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhC-CCCCCCCCcccccccccccccc
Q 010517          125 VARIKGH----INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDV  199 (508)
Q Consensus       125 ~A~~~g~----~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~  199 (508)
                      +++..++    .+++++|+++|++++  .+|.+|+|||| +|+..++.+++++|+.. |++++.++..++++++.|++.+
T Consensus       208 ~~~~~~~~~~~~~i~~lLl~~gad~n--~~d~~g~t~L~-~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g  284 (337)
T 4g8k_A          208 HALLSSDDSDVEAITHLLLDHGADVN--VRGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  284 (337)
T ss_dssp             HHHHHSCTTTHHHHHHHHHHTTCCTT--CCCGGGCCHHH-HHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             HHHHHcCcccHHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcC
Confidence            9887654    468999999999999  89999999999 99999999999999875 8899999999999999999999


Q ss_pred             ChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHH
Q 010517          200 QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       200 ~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      +...+..|+        .+|+|  ++     .+++|++|... ++...++.|+
T Consensus       285 ~~~iv~~Ll--------~~GAd--~n-----~~~~L~~A~~~-~~~~iv~~Ll  321 (337)
T 4g8k_A          285 LKKIAELLC--------KRGAS--TD-----CGDLVMTARRN-YDHSLVKVLL  321 (337)
T ss_dssp             CHHHHHHHH--------TTSCS--ST-----TCCHHHHHHHT-TCHHHHHHHH
T ss_pred             CHHHHHHHH--------HCCCC--CC-----CCCHHHHHHHc-CCHHHHHHHH
Confidence            866655444        34676  33     35799998764 4556666665

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.3e-30  Score=250.54  Aligned_cols=165  Identities=19%  Similarity=0.140  Sum_probs=152.0

Q ss_pred             cccCCchHHHHHHHHc---CCHHHHHHHHHcCCCC-------Cc----cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCC
Q 010517           12 QQRQSKDELLYQWVIA---GDVDAIRALRSQGASL-------EW----MDKEGKTPLIVACMDSGLINVAKTLIELGANI   77 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~-------~~----~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~   77 (508)
                      .+|..|.||||+|+..   |+.++|++||++|+++       +.    .|..|.||||+|+.. |+.+++++|+++|+++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~ga~~  127 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-RNMTLVTLLVENGADV  127 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc-CCHHHHHHHHHCCCCc
Confidence            3588999999999987   9999999999998653       22    567999999999998 9999999999999999


Q ss_pred             cccCCCC--------------CCCcHHHHHHHcCCHHHHHHHHH---CCCCccccCCCCCcHHHHHHHhCC---------
Q 010517           78 NAYRPGG--------------RGGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------  131 (508)
Q Consensus        78 n~~~~d~--------------~g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpLh~A~~~g~---------  131 (508)
                      +.+  +.              .|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+         
T Consensus       128 ~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~  205 (273)
T 2pnn_A          128 QAA--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV  205 (273)
T ss_dssp             TCC--BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH
T ss_pred             Ccc--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH
Confidence            998  54              79999999999999999999999   999999999999999999999998         


Q ss_pred             HHHHHHHHHcCCcccc-----cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC
Q 010517          132 INVVRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (508)
Q Consensus       132 ~~~v~~Ll~~ga~~~~-----~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~  180 (508)
                      .+++++|+++|++++.     ..+|..|+|||| +|+..|+.+++++|+++|+.
T Consensus       206 ~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~-~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLA-LAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhhhcccccccccccCCCCCCHHH-HHHHhChHHHHHHHHHCCCC
Confidence            8999999999999862     258999999999 99999999999999999993

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=4.8e-30  Score=250.18  Aligned_cols=183  Identities=15%  Similarity=0.090  Sum_probs=165.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC-CcHHHHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG-GTPLHHAA   94 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g-~tpLh~A~   94 (508)
                      +|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..| .||||+|+
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~~t~L~~A~  137 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHAV  137 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGC--SSSGGGSHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCcc--CCCCCCCHHHHHH
Confidence            599999999999999999999999999999999999999999998 9999999999999999998  7888 79999999


Q ss_pred             HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCH-HHHHHhhcCCHHHHHH
Q 010517           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF-LEALAPQLMSRKIWVV  173 (508)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tp-L~~~A~~~~~~~i~~~  173 (508)
                      ..|+.+++++|+++|+++... ..|.||||+|+..|+.+++++|+++|++++  .+|..|+|| || +|+..++.+++++
T Consensus       138 ~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~-~A~~~~~~~~v~~  213 (285)
T 3kea_A          138 MLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNKDIEMLQA  213 (285)
T ss_dssp             HTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHH-HHHHHTCHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHH-HHHHcCCHHHHHH
Confidence            999999999999999886322 289999999999999999999999999999  899999998 99 9999999999999


Q ss_pred             hhhCCCCCCCCCccccccccccccccChHHHHHHHHhhh
Q 010517          174 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI  212 (508)
Q Consensus       174 Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~  212 (508)
                      |+++|++++..+.       .+...++...+..|+....
T Consensus       214 Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~  245 (285)
T 3kea_A          214 LFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHV  245 (285)
T ss_dssp             HTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCC
Confidence            9999999988772       3344566666666555443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=4.3e-30  Score=246.59  Aligned_cols=165  Identities=20%  Similarity=0.116  Sum_probs=151.0

Q ss_pred             cCCchHHHHHHH---HcCCHHHHHHHHHcCCC-----------CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcc
Q 010517           14 RQSKDELLYQWV---IAGDVDAIRALRSQGAS-----------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA   79 (508)
Q Consensus        14 ~~~g~t~L~~Aa---~~g~~~~v~~Ll~~g~~-----------~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~   79 (508)
                      |..|.||||+|+   ..|+.++|++|++.|++           ++..|..|.||||+|+.. |+.++|++|+++|++++.
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~  121 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHA  121 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT-TCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc-CCHHHHHHHHhCCCCcCc
Confidence            477999999999   77999999999998754           445566899999999998 999999999999999999


Q ss_pred             cCCC--------------CCCCcHHHHHHHcCCHHHHHHHHH---CCCCccccCCCCCcHHHHHHHhCC---------HH
Q 010517           80 YRPG--------------GRGGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------IN  133 (508)
Q Consensus        80 ~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpLh~A~~~g~---------~~  133 (508)
                      +  +              ..|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..++         .+
T Consensus       122 ~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~  199 (260)
T 3jxi_A          122 Q--ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK  199 (260)
T ss_dssp             C--CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHH
T ss_pred             c--ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHH
Confidence            8  5              689999999999999999999999   999999999999999999999888         79


Q ss_pred             HHHHHHHcCCcccc-----cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCC
Q 010517          134 VVRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANP  182 (508)
Q Consensus       134 ~v~~Ll~~ga~~~~-----~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~  182 (508)
                      ++++|+++|++++.     +.+|..|+|||| +|+..|+.+++++|+++|.+..
T Consensus       200 ~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccccccchhhcccCCCCCHHH-HHHHcCCHHHHHHHHHhCCCcc
Confidence            99999999999831     279999999999 9999999999999999997553

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=5.1e-30  Score=246.08  Aligned_cols=194  Identities=16%  Similarity=0.119  Sum_probs=170.7

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHH----HHcCCCCCccC----CCCChHHHHHH---HhCCCHHHHHHHHHcCCC------
Q 010517           14 RQSKDELLYQWVIAGDVDAIRAL----RSQGASLEWMD----KEGKTPLIVAC---MDSGLINVAKTLIELGAN------   76 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~L----l~~g~~~~~~d----~~G~TpLh~Aa---~~~g~~~~v~~Ll~~ga~------   76 (508)
                      +..|+++||.|++.|+.+.|+.|    ++.|++++..+    ..|.||||+|+   .. |+.+++++|+++|++      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-GRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-TBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-CCHHHHHHHHHhcccccchHh
Confidence            45789999999999999955544    45999998776    77999999999   55 999999999999854      


Q ss_pred             ---CcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC--------------CCCCcHHHHHHHhCCHHHHHHHH
Q 010517           77 ---INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIE  139 (508)
Q Consensus        77 ---~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~TpLh~A~~~g~~~~v~~Ll  139 (508)
                         .+..+.|..|+||||+|+..|+.++|++|+++|++++..+              ..|.||||+|+..|+.+++++|+
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence               2222225689999999999999999999999999999998              68999999999999999999999


Q ss_pred             H---cCCcccccccccCCCCHHHHHHhhcCC---------HHHHHHhhhCCCCC-------CCCCccccccccccccccC
Q 010517          140 S---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQ  200 (508)
Q Consensus       140 ~---~ga~~~~~~~~~~g~tpL~~~A~~~~~---------~~i~~~Ll~~g~~~-------~~~~~~~~~~l~~a~~~~~  200 (508)
                      +   .|++++  .+|..|+|||| +|+..++         .+++++|+++|+++       +..+..+.++++.++..++
T Consensus       161 ~~~~~ga~~~--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          161 ENGHKQADLR--RQDSRGNTVLH-ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             hccccCCCCc--ccCCCCCcHHH-HHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            9   999999  99999999999 8998777         79999999999988       5688889999999999999


Q ss_pred             hHHHHHHHHhh
Q 010517          201 PRAVIALWKAK  211 (508)
Q Consensus       201 ~~~v~~l~~~~  211 (508)
                      ...+..|+...
T Consensus       238 ~~~v~~Ll~~g  248 (260)
T 3jxi_A          238 IGIFQHIIRRE  248 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            88777776554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=8.3e-30  Score=253.49  Aligned_cols=177  Identities=13%  Similarity=0.079  Sum_probs=148.7

Q ss_pred             cCccc-ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCC---HHHHHHHHHcC-CCCcccCC
Q 010517            8 MNQHQ-QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL---INVAKTLIELG-ANINAYRP   82 (508)
Q Consensus         8 ~~~~~-~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~---~~~v~~Ll~~g-a~~n~~~~   82 (508)
                      .++|. +|..|.||||+|+..|+.++|++||++|++++.+|.+|+||||+|+.. |+   .++++.|++++ ++++.+  
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~--  197 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLYPCLILE--  197 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEE--
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh-cccccHHHHHHHHHhhhccccCC--
Confidence            56677 799999999999999999999999999999999999999999999987 77   68888888886 778888  


Q ss_pred             CCCCCcHHHHHHH----cCCHHHHHHHHHC--------------------CCCccccCCCCCcHHHHHHHhCCHHHHHHH
Q 010517           83 GGRGGTPLHHAAK----RGLEPTVRLLLSC--------------------GANALVRNDDCHTALGVARIKGHINVVRAI  138 (508)
Q Consensus        83 d~~g~tpLh~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~d~~g~TpLh~A~~~g~~~~v~~L  138 (508)
                      |..|+||||+|+.    .|+.+++++|++.                    |++++.+|..|.||||+|+.      +++|
T Consensus       198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~L  271 (327)
T 1sw6_A          198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWI  271 (327)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHH
T ss_pred             CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHH
Confidence            8899999999998    8999999999877                    88999999999999999985      8888


Q ss_pred             HHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccc
Q 010517          139 ESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  198 (508)
Q Consensus       139 l~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~  198 (508)
                      +++  +++  .+|.+|+|||| +|+..|+.+++++|+++|++++.++..+.++++.+++.
T Consensus       272 l~~--~~n--~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          272 IAN--MLN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHH--TTT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             HHh--CCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            888  466  78999999999 99999999999999999999999999999999998754

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=7e-30  Score=242.38  Aligned_cols=167  Identities=12%  Similarity=0.040  Sum_probs=125.1

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A   93 (508)
                      +..|.||||.|+..|+.++++.||++|++++. +..|.||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNA   77 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence            34799999999999999999999999999986 47899999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCC-CHHHHHH--hhcCCHHH
Q 010517           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP-SFLEALA--PQLMSRKI  170 (508)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~-tpL~~~A--~~~~~~~i  170 (508)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .++..|. |||| +|  +..|+.++
T Consensus        78 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~-~a~~~~~g~~~~  154 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQC  154 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHH-HHHHhhhccHHH
Confidence            99999999999999999999999999999999999999999999999999999  8887777 9999 88  78899999


Q ss_pred             HHHhhhCCCCCCCCCcc
Q 010517          171 WVVVIPCGTANPSKPLR  187 (508)
Q Consensus       171 ~~~Ll~~g~~~~~~~~~  187 (508)
                      +++|+++|++.+..+..
T Consensus       155 ~~~Ll~~~a~~~~~~~~  171 (239)
T 1ycs_B          155 SQFLYGVQEKMGIMNKG  171 (239)
T ss_dssp             HHHHHHHHHHTTTTGGG
T ss_pred             HHHHHHhhhcccccccc
Confidence            99999999988776533

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.7e-30  Score=242.67  Aligned_cols=186  Identities=19%  Similarity=0.083  Sum_probs=168.5

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp   89 (508)
                      .+..+.+|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|+++|.+  |..|+||
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~n~~--d~~g~tp   90 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSP--DSHGWTP   90 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCH
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCH
Confidence            345678899999999999999999999999999999999999999999998 9999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccC-CCCCcHHHHH--HHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcC
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVA--RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  166 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A--~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~  166 (508)
                      ||+|+..|+.+++++|+++|++++..+ ..|.||||+|  +..|+.+++++|++.|++++  .+|..|.|+++ .+....
T Consensus        91 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~~l~-~~~~~~  167 (229)
T 2vge_A           91 LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG--LMNSGAVYALW-DYSAEF  167 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT--TSGGGEEEESS-CBCCSS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc--cccCCchHHHH-HHhhcc
Confidence            999999999999999999999999987 6999999999  99999999999999999999  88999999999 444333


Q ss_pred             CHHHHHHhhhCCCC--CCCCCccccccccccccccChHHH
Q 010517          167 SRKIWVVVIPCGTA--NPSKPLRFELVIYPSLQDVQPRAV  204 (508)
Q Consensus       167 ~~~i~~~Ll~~g~~--~~~~~~~~~~~l~~a~~~~~~~~v  204 (508)
                         ..++|+..|++  ++.++..+.++++.++..++...+
T Consensus       168 ---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v  204 (229)
T 2vge_A          168 ---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV  204 (229)
T ss_dssp             ---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred             ---ccccCccccccccccccCCCcccHHHHHHHcCCccee
Confidence               34688999988  567777899999999988874443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=5.1e-29  Score=234.88  Aligned_cols=192  Identities=13%  Similarity=0.045  Sum_probs=163.1

Q ss_pred             HHHHHHcCCCCCccC---CCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q 010517           33 IRALRSQGASLEWMD---KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG  109 (508)
Q Consensus        33 v~~Ll~~g~~~~~~d---~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  109 (508)
                      |+.||++|++++..+   .+|.||||+|+.. |+.+++++|++.|+++|.+  |..|+||||+|+..|+.+++++|+++|
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALT-GELEVVQQAVKEMNDPSQP--NEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHH-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHc-CCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            578899999876554   4677889999998 9999999999999999998  889999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccc-cCCCCHHHHHH--hhcCCHHHHHHhhhCCCCCCCCCc
Q 010517          110 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALA--PQLMSRKIWVVVIPCGTANPSKPL  186 (508)
Q Consensus       110 a~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~-~~g~tpL~~~A--~~~~~~~i~~~Ll~~g~~~~~~~~  186 (508)
                      ++++.+|..|.||||+|+..|+.+++++|+++|++++  .++ .+|+|||| +|  +..++.+++++|+++|++++..+.
T Consensus        78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~-~A~a~~~~~~~~v~~Ll~~ga~~~~~~~  154 (229)
T 2vge_A           78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF--ATTLSDGATAFE-KCDPYREGYADCATYLADVEQSMGLMNS  154 (229)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCSSTTCCTGG-GCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHhcChHHHHHHHHHcCCCcccccC
Confidence            9999999999999999999999999999999999999  665 69999999 88  999999999999999999999887


Q ss_pred             cccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517          187 RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  241 (508)
Q Consensus       187 ~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~  241 (508)
                      .+.++++.......           .+.+...+.+..++.+|..|.|||++|+..
T Consensus       155 ~~~~~l~~~~~~~~-----------~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~  198 (229)
T 2vge_A          155 GAVYALWDYSAEFG-----------DELSFREGESVTVLRRDGPEETDWWWAALH  198 (229)
T ss_dssp             GEEEESSCBCCSST-----------TBCCBCTTCEEEEEESSCTTCSSEEEEEET
T ss_pred             CchHHHHHHhhccc-----------cccCccccccccccccCCCcccHHHHHHHc
Confidence            77777776554433           245556677766888999999999999753

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=7.8e-29  Score=219.03  Aligned_cols=143  Identities=25%  Similarity=0.240  Sum_probs=120.9

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc-H
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT-P   89 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t-p   89 (508)
                      +..++.|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+ . |+.+++++|+++|++++.+  |..|+| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~--d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c-CCHHHHHHHHHcCCCCCCc--CCCCCcHH
Confidence            456788999999999999999999999999999999999999999985 6 9999999999999999998  889999 9


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHH
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE  159 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~  159 (508)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .++..|.||.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~~~  149 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--GSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC--ccCcCcCcccc
Confidence            999999999999999999999999999999999999999999999999999999999  89999999987

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2.1e-28  Score=210.97  Aligned_cols=133  Identities=26%  Similarity=0.309  Sum_probs=104.8

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCC-C
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR-G   86 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~-g   86 (508)
                      .+++.++..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.  |+.+++++|+++|++++.+  |.. |
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~~g   78 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNCA--DPATL   78 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT--SCHHHHHHHHHHTCCSSCC--BTTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc--CCHHHHHHHHHCCCCCCCc--CCCCC
Confidence            3556677778888888888888888888888888888888888888888775  7778888888888888777  666 7


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~  144 (508)
                      +||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            8888888888888888888888888888888888888888888888888888877764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=8.4e-29  Score=246.22  Aligned_cols=198  Identities=15%  Similarity=-0.009  Sum_probs=163.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC
Q 010517           19 ELLYQWVIAGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (508)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g   97 (508)
                      +.+|+|+..+..+++++|++.|+++|. +|..|.||||+|+.. |+.++|++|+++|++++.+  |..|+||||+|+..|
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSV  175 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSS
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhc
Confidence            446888888899999999999999999 899999999999998 9999999999999999998  889999999999999


Q ss_pred             C---HHHHHHHHHCC-CCccccCCCCCcHHHHHHH----hCCHHHHHHHHHc--------------------CCcccccc
Q 010517           98 L---EPTVRLLLSCG-ANALVRNDDCHTALGVARI----KGHINVVRAIESH--------------------ICYFCGWL  149 (508)
Q Consensus        98 ~---~~~v~~Ll~~g-a~~~~~d~~g~TpLh~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~~  149 (508)
                      +   .++++.|++++ ++++.+|..|.||||+|+.    .|+.+++++|++.                    |++++  .
T Consensus       176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~--~  253 (327)
T 1sw6_A          176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN--D  253 (327)
T ss_dssp             HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred             ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc--c
Confidence            8   68888888886 7899999999999999999    8999999999987                    78888  8


Q ss_pred             cccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccC
Q 010517          150 REFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ  229 (508)
Q Consensus       150 ~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~  229 (508)
                      ++..|.|||| .|+.      +++|+++  +++.++..+.+++|.++..++...+..|+.        +++|  ++.+|.
T Consensus       254 ~~~~g~t~L~-~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~--------~Gad--~~~~d~  314 (327)
T 1sw6_A          254 KNGERKDSIL-ENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLD--------YGAD--PFIANK  314 (327)
T ss_dssp             ------CHHH-HHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHH--------TTCC--TTCCCT
T ss_pred             ccccCCChhH-HHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------cCCC--CcccCC
Confidence            9999999999 7775      8889888  477778889999999999998766665543        3788  888999


Q ss_pred             CCcchhHhhhh
Q 010517          230 ATKIRYKFASA  240 (508)
Q Consensus       230 ~~~t~l~~a~~  240 (508)
                      .|+||||+|+.
T Consensus       315 ~G~TpL~~A~~  325 (327)
T 1sw6_A          315 SGLRPVDFGAG  325 (327)
T ss_dssp             TSCCGGGGTCC
T ss_pred             CCCCHHHHHHh
Confidence            99999999975

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=8.7e-29  Score=240.11  Aligned_cols=189  Identities=16%  Similarity=0.136  Sum_probs=175.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC-CCcccCCCCCCCcHHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGAS--LEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPLHH   92 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga-~~n~~~~d~~g~tpLh~   92 (508)
                      .+.+++|.|+..|+.+.++.|++.+.+  +|.+|.+|.||||+|+.. |+.+++++|++.|+ +++..  |..|+||||+
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~~g~tpL~~  151 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSH-ANFPVVQQLLDSGVCKVDKQ--NRAGYSPIML  151 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTSCCCTTCC--CTTSCCHHHH
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHC-CCHHHHHHHHHCCCCcCCCC--CCCCCCHHHH
Confidence            356778999999999999999998766  899999999999999998 99999999999998 99988  8899999999


Q ss_pred             HH-----HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517           93 AA-----KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (508)
Q Consensus        93 A~-----~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~  167 (508)
                      |+     ..++.+++++|++.|.+++..|..|.||||+|+..|+.+++++|+++|++++  .+|.+|+|||| +|+..|+
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh-~A~~~g~  228 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALM-CACEHGH  228 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTC
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHCCC
Confidence            99     6689999999999999999999999999999999999999999999999999  99999999999 9999999


Q ss_pred             HHHHHHhhh-CCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010517          168 RKIWVVVIP-CGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA  210 (508)
Q Consensus       168 ~~i~~~Ll~-~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~  210 (508)
                      .+++++|++ .|++++..+..+.++++.++..++...+..|+..
T Consensus       229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999 8999999999999999999999887776665543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=7.4e-28  Score=216.06  Aligned_cols=143  Identities=25%  Similarity=0.296  Sum_probs=132.3

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp   89 (508)
                      .+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~  105 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIY--DWNGGTP  105 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            577899999999999999999999999999999999999999999999998 9999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCH
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF  157 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tp  157 (508)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++++++.  .++..|.||
T Consensus       106 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~--~~~~~~~~p  171 (172)
T 3v30_A          106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF--QSNLVPADP  171 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS--CC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh--cccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999988  788888876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=9.9e-28  Score=206.79  Aligned_cols=134  Identities=18%  Similarity=0.225  Sum_probs=129.7

Q ss_pred             CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCC-
Q 010517           40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-  118 (508)
Q Consensus        40 g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-  118 (508)
                      +++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+. |+.+++++|+++|++++.+|.. 
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~   77 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAAR-GQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT   77 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred             CCCccCCCCCCccHHHHHHHc-CCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence            578999999999999999998 9999999999999999998  8899999999999 9999999999999999999999 


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC
Q 010517          119 CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (508)
Q Consensus       119 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~  180 (508)
                      |.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|+|
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVD-LAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHH-HHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999  99999999999 99999999999999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=3.6e-27  Score=215.60  Aligned_cols=161  Identities=21%  Similarity=0.153  Sum_probs=152.2

Q ss_pred             CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcH
Q 010517           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTA  122 (508)
Q Consensus        43 ~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp  122 (508)
                      +|.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus        28 ~n~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACML-GMENAIDKLVENFDKLEDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP  104 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHH-TCGGGHHHHHHHHCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             HhCcCCCCCCHHHHHHHc-CCHHHHHHHHHhccccccc--cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            467899999999999998 9999999999999999988  8899999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChH
Q 010517          123 LGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPR  202 (508)
Q Consensus       123 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~  202 (508)
                      ||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++..+..+.++++.++..++..
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLI-VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence            999999999999999999999999  89999999999 999999999999999999999999989999999999888876


Q ss_pred             HHHHHHH
Q 010517          203 AVIALWK  209 (508)
Q Consensus       203 ~v~~l~~  209 (508)
                      .+..|+.
T Consensus       182 ~v~~Ll~  188 (192)
T 2rfm_A          182 VIKIFTE  188 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6655443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=9.1e-27  Score=200.73  Aligned_cols=127  Identities=28%  Similarity=0.360  Sum_probs=119.3

Q ss_pred             ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (508)
Q Consensus        13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~   92 (508)
                      ....|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~   86 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNAV--DAIGFTPLHL   86 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHH
Confidence            356789999999999999999999999999999999999999999998 9999999999999999988  8899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 010517           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  142 (508)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  142 (508)
                      |+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=3.2e-28  Score=221.63  Aligned_cols=158  Identities=15%  Similarity=0.059  Sum_probs=142.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHHhCCCH----HHHHHHHHcCCCCcccCCCCCCCcHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLI----NVAKTLIELGANINAYRPGGRGGTPL   90 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpLh~Aa~~~g~~----~~v~~Ll~~ga~~n~~~~d~~g~tpL   90 (508)
                      .+.++|+.|++.|+++.++.+++.+.  +.++ ..|+||||+|+.. |+.    +++++|+++|+++|.+  |..|+|||
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~-~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpL   79 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRN-NNDEARYKISMFLINKGADIKSR--TKEGTTLF   79 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTC-SCHHHHHHHHHHHHHTTCCSSCC--CTTCCCTH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHc-CCcchHHHHHHHHHHCCCCCCCC--CCCCCcHH
Confidence            35688999999999999999999864  4555 7899999999987 764    5999999999999998  89999999


Q ss_pred             HHHHHcCC------HHHHHHHHHCCCCccccCCCCC-cHHHHHHHhC-----CHHHHHHHHH-cCCcccccccccCCCCH
Q 010517           91 HHAAKRGL------EPTVRLLLSCGANALVRNDDCH-TALGVARIKG-----HINVVRAIES-HICYFCGWLREFYGPSF  157 (508)
Q Consensus        91 h~A~~~g~------~~~v~~Ll~~ga~~~~~d~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~ga~~~~~~~~~~g~tp  157 (508)
                      |+|+..++      .+++++|+++|++++.+|..|. ||||+|+..+     +.+++++|++ +|++++  .+|..|+||
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~Tp  157 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTA  157 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCH
Confidence            99999987      6889999999999999999999 9999999944     4679999999 999999  999999999


Q ss_pred             HHHHHhhcCCHHHHHHhhhCCCCC
Q 010517          158 LEALAPQLMSRKIWVVVIPCGTAN  181 (508)
Q Consensus       158 L~~~A~~~~~~~i~~~Ll~~g~~~  181 (508)
                      || +|+..++.+++++|.....+.
T Consensus       158 L~-~A~~~~~~~~v~~L~~~~~~~  180 (186)
T 3t8k_A          158 LE-FVKRCQKPIALKMMEDYIKKY  180 (186)
T ss_dssp             HH-HHHTTTCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHcCCHHHHHHHHHHHHHH
Confidence            99 999999999999998766443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=2.6e-26  Score=194.20  Aligned_cols=126  Identities=34%  Similarity=0.514  Sum_probs=118.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~   95 (508)
                      +|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.+  |..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCcHHHHHHH
Confidence            588999999999999999999999999999999999999999998 9999999999999999988  7899999999999


Q ss_pred             cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (508)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~  144 (508)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=2.8e-26  Score=205.35  Aligned_cols=133  Identities=26%  Similarity=0.345  Sum_probs=127.3

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      +.+++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus        37 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g  113 (169)
T 2y1l_E           37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF-GHLEIVEVLLKNGADVNAN--DMEG  113 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCC
Confidence            356677899999999999999999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  142 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  142 (508)
                      +||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus       114 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=1.2e-26  Score=205.69  Aligned_cols=134  Identities=28%  Similarity=0.341  Sum_probs=126.9

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      ..+.+.+|..|.||||+|+. |+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus        28 ~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g  103 (162)
T 1ihb_A           28 NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIE--DNEG  103 (162)
T ss_dssp             CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCC
Confidence            45667889999999999999 999999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGAN-ALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~  144 (508)
                      +||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus       104 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999998 699999999999999999999999999999985

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=1.9e-26  Score=208.40  Aligned_cols=136  Identities=21%  Similarity=0.206  Sum_probs=131.9

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (508)
                      ...+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~  106 (179)
T 3f6q_A           30 NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAV--NEHGN  106 (179)
T ss_dssp             SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSC
T ss_pred             ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCC
Confidence            35677899999999999999999999999999999999999999999999998 9999999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  146 (508)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++
T Consensus       107 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          107 VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN  165 (179)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999998

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=4.8e-26  Score=203.14  Aligned_cols=156  Identities=19%  Similarity=0.085  Sum_probs=147.8

Q ss_pred             CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q 010517           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (508)
Q Consensus        49 ~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~  128 (508)
                      .|.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQ-GEMLYLATRIEQENVINHT--DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHT-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHC-CCHHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            589999999998 9999999999999999988  8899999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010517          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (508)
Q Consensus       129 ~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~  208 (508)
                      .|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++..+..+.++++.+...++...+..|+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVN--EYDWNGGTPLL-YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999999999  89999999999 999999999999999999999999989999999999988877766655


Q ss_pred             Hh
Q 010517          209 KA  210 (508)
Q Consensus       209 ~~  210 (508)
                      ..
T Consensus       156 ~~  157 (167)
T 3v31_A          156 SH  157 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=3.1e-26  Score=202.22  Aligned_cols=143  Identities=19%  Similarity=0.167  Sum_probs=121.0

Q ss_pred             CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCc-
Q 010517           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT-  121 (508)
Q Consensus        43 ~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~T-  121 (508)
                      .+..+..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+ .|+.+++++|+++|++++.+|..|.| 
T Consensus         5 ~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~tt   80 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTR   80 (156)
T ss_dssp             -----CCSTTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCC
T ss_pred             ccCCCccchHHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            345678899999999998 9999999999999999998  889999999985 99999999999999999999999999 


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccc
Q 010517          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI  192 (508)
Q Consensus       122 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l  192 (508)
                      |||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++..+..+.++.
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~  148 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRAAAGGTRGSNHARIDAA  148 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSSCC--------------
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence            9999999999999999999999999  99999999999 99999999999999999999988776555443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=2.3e-25  Score=195.79  Aligned_cols=148  Identities=21%  Similarity=0.221  Sum_probs=139.7

Q ss_pred             CChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHh
Q 010517           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK  129 (508)
Q Consensus        50 G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~  129 (508)
                      +.|+||+|+.. |+.+++++|+++|++++.   |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~-g~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARA-GQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHH-TCHHHHHHHHHHTCCCCC---CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHc-CCHHHHHHHHHcCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            46899999998 999999999999998873   78999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHH
Q 010517          130 GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV  204 (508)
Q Consensus       130 g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v  204 (508)
                      |+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++..+..+.++++.+...++...+
T Consensus        78 ~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~  149 (153)
T 1awc_B           78 GHANIVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             TCHHHHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ChHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999  89999999999 99999999999999999999999998999999999888775443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.2e-25  Score=196.44  Aligned_cols=129  Identities=26%  Similarity=0.378  Sum_probs=124.1

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (508)
                      .+.+.+|..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+
T Consensus        27 ~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~  102 (156)
T 1bd8_A           27 VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVP--DGTGA  102 (156)
T ss_dssp             CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSCCC--CTTSC
T ss_pred             cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCC
Confidence            3677889999999999 999999999999999999999999999999999998 9999999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~  141 (508)
                      ||||+|+..|+.+++++|++. ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          103 LPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999 99999999999999999999999999999875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=2.7e-26  Score=217.62  Aligned_cols=148  Identities=21%  Similarity=0.196  Sum_probs=134.7

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A   93 (508)
                      +..|.|+||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~tpL~~A  110 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCA  110 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence            46789999999999999999999999999999999999999999998 9999999999999999998  88999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCccccCCCCC-cHHHHH--HHhCCHHHHHHHHHcCCccccccc---------ccCCCCHHHHH
Q 010517           94 AKRGLEPTVRLLLSCGANALVRNDDCH-TALGVA--RIKGHINVVRAIESHICYFCGWLR---------EFYGPSFLEAL  161 (508)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~-TpLh~A--~~~g~~~~v~~Ll~~ga~~~~~~~---------~~~g~tpL~~~  161 (508)
                      +..|+.+++++|+++|++++..+..|. ||||+|  +..|+.+++++|++.|++++  ..         +..+.++++ +
T Consensus       111 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~--~~~~~~~~al~d~~~~~~~e-L  187 (239)
T 1ycs_B          111 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG--IMNKGVIYALWDYEPQNDDE-L  187 (239)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT--TTGGGEEEESSCBCCSSTTB-C
T ss_pred             HHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc--ccccceEEEEeccCCCCCCc-c
Confidence            999999999999999999999998887 999999  78899999999999999887  43         566778877 6


Q ss_pred             HhhcCC
Q 010517          162 APQLMS  167 (508)
Q Consensus       162 A~~~~~  167 (508)
                      +...|.
T Consensus       188 a~~~G~  193 (239)
T 1ycs_B          188 PMKEGD  193 (239)
T ss_dssp             CBCSSC
T ss_pred             cccCCC
Confidence            665554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=6.4e-26  Score=195.50  Aligned_cols=131  Identities=22%  Similarity=0.265  Sum_probs=71.9

Q ss_pred             CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC
Q 010517           40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC  119 (508)
Q Consensus        40 g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  119 (508)
                      |+|+ .+|.+|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g   76 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIK-GDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN   76 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG
T ss_pred             CCCC-CcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC
Confidence            3444 4455555555555555 5555555555555555555  4555555555555555555555555555555555555


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhC
Q 010517          120 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (508)
Q Consensus       120 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~  177 (508)
                      .||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..+..+++++|.+.
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           77 DSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVD-YTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGG-GCCCHHHHHHHSCC---
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhhccHHHHHhhcccc
Confidence            555555555555555555555555555  55555555555 55555555555544443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=2.3e-26  Score=198.31  Aligned_cols=129  Identities=28%  Similarity=0.321  Sum_probs=120.2

Q ss_pred             cccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh   91 (508)
                      .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNTT--GYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCcccCc--CCCCCCHHH
Confidence            4688999999999999999999999999999999999999999999998 9999999999999999998  889999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q 010517           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC  143 (508)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  143 (508)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|.+.+.
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999999999999999999999999999999999988876654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=2.5e-25  Score=191.67  Aligned_cols=127  Identities=20%  Similarity=0.236  Sum_probs=120.5

Q ss_pred             cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHH
Q 010517           46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV  125 (508)
Q Consensus        46 ~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~  125 (508)
                      ....|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus        10 ~~~~~~t~l~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~   86 (136)
T 2jab_A           10 HGSDLGKKLLEAARA-GQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHL   86 (136)
T ss_dssp             --CHHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             ccccccHHHHHHHHh-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence            345689999999998 9999999999999999998  8899999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCC
Q 010517          126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  178 (508)
Q Consensus       126 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g  178 (508)
                      |+..|+.+++++|+++|++++  .+|.+|.|||| +|+..++.+++++|+++|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADVN--AQDKFGKTAFD-ISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999  89999999999 999999999999999876

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=6.4e-25  Score=185.55  Aligned_cols=126  Identities=32%  Similarity=0.465  Sum_probs=122.3

Q ss_pred             CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q 010517           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (508)
Q Consensus        49 ~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~  128 (508)
                      +|+||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence            589999999998 9999999999999999988  8899999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC
Q 010517          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (508)
Q Consensus       129 ~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~  180 (508)
                      .|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999  89999999999 99999999999999999975

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=2.3e-25  Score=202.14  Aligned_cols=143  Identities=21%  Similarity=0.174  Sum_probs=131.9

Q ss_pred             cccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh   91 (508)
                      ..+..|.||||+|+..|+.+++++||+ |++++.+|..|.||||+|+.. |+.+++++|+++|+++|.++ +..|+||||
T Consensus        39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~-~~~g~tpL~  115 (183)
T 3deo_A           39 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRD-MRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCC-SSSSCCHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcCC-CCCCCCHHH
Confidence            446789999999999999999999999 999999999999999999998 99999999999999999883 389999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHH
Q 010517           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (508)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~  171 (508)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..++                   ...+.++|+ +++..|+.+++
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~-------------------~~~~~~~l~-~a~~~~~~~i~  175 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-------------------TTPKGNPMQ-FGRRIGLEKVI  175 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH-------------------TCCCCSHHH-HHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc-------------------CcccccHHH-HHHHcCHHHHH
Confidence            9999999999999999999999999999999999987422                   245789999 99999999999


Q ss_pred             HHhhhC
Q 010517          172 VVVIPC  177 (508)
Q Consensus       172 ~~Ll~~  177 (508)
                      ++|.++
T Consensus       176 ~~L~~~  181 (183)
T 3deo_A          176 NVLEGQ  181 (183)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            998765

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=7.8e-25  Score=194.85  Aligned_cols=149  Identities=21%  Similarity=0.199  Sum_probs=137.5

Q ss_pred             cCCCCChHHHHHHHhCCCHHHHHHHHHc-CCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHH
Q 010517           46 MDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG  124 (508)
Q Consensus        46 ~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh  124 (508)
                      .|.+|.|+||+|+.. |+.++++.|++. +.+++..  +..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus         4 ~~~~~~~~l~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKA-GDVETVKKLCTVQSVNCRDI--EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHH-TCHHHHHHHCCTTTTTCCCT--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CcchhhHHHHHHHHh-CCHHHHHHHHHcCCCCcccc--ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence            467889999999998 999999999985 5566655  788999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccCh
Q 010517          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP  201 (508)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~  201 (508)
                      +|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++++..+..+.++++.+.+ ++.
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~  153 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVVN--VADLWKFTPLH-EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDT  153 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCH
T ss_pred             HHHHcCcHHHHHHHHhCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CCh
Confidence            9999999999999999999999  89999999999 9999999999999999999999999999999999766 443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=1.4e-25  Score=213.33  Aligned_cols=146  Identities=21%  Similarity=0.181  Sum_probs=134.3

Q ss_pred             cccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh   91 (508)
                      ..+..|.||||+|+..|+.++|++||+ |+++|.+|..|.||||+|+.. |+.++|++|+++|+++|.++ +..|+||||
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~-~~~g~t~L~  116 (244)
T 3ui2_A           40 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRD-MRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHTTCCTTCCC-SSSCCCHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCcCC-CCCCCCHHH
Confidence            345689999999999999999999999 999999999999999999998 99999999999999999983 388999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHH
Q 010517           92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  171 (508)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~  171 (508)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..                   .....+.|||| +|+..|+.+++
T Consensus       117 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-------------------~~~~~~~~~l~-~a~~~g~~~iv  176 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-------------------LKTTPKGNPMQ-FGRRIGLEKVI  176 (244)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-------------------HTTCCCSSHHH-HHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-------------------HhccCCCCHHH-HHHHcChHHHH
Confidence            99999999999999999999999999999999999862                   22356899999 99999999999


Q ss_pred             HHhhhCCCC
Q 010517          172 VVVIPCGTA  180 (508)
Q Consensus       172 ~~Ll~~g~~  180 (508)
                      ++|++++.+
T Consensus       177 ~~L~~~~~~  185 (244)
T 3ui2_A          177 NVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHEE
T ss_pred             HHHHHhccc
Confidence            999987654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=6.7e-26  Score=212.18  Aligned_cols=139  Identities=24%  Similarity=0.286  Sum_probs=110.9

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHc-CCCCcccCCCCCCCc
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGT   88 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~n~~~~d~~g~t   88 (508)
                      ++.++..|.|+||+|+..|+.++|++||+.|++++.+|..|.||||+|+.. |+.++|++|+++ |++++.+  |..|+|
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~g~~~~~~--d~~g~t  142 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG-GHKDIVEMLFTQPNIELNQQ--NKLGDT  142 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHTTSTTCCCCCC--CTTSCC
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHcCCCCCcccc--CCCCCC
Confidence            345677888999999999999999999999999999999999999999987 899999999988 8999988  788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccC
Q 010517           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFY  153 (508)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~  153 (508)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|++.++...  .++..
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~--~~~~~  205 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT--LSNAE  205 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh--ccchh
Confidence            9999999999999999999999999999999999999999999999999998888776  44443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=4.6e-26  Score=207.32  Aligned_cols=134  Identities=20%  Similarity=0.211  Sum_probs=121.6

Q ss_pred             ccccc-CCchHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCChHHHHHHHhCCC------HHHHHHHHHcCCCCc
Q 010517           10 QHQQR-QSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGL------INVAKTLIELGANIN   78 (508)
Q Consensus        10 ~~~~~-~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~------~~~v~~Ll~~ga~~n   78 (508)
                      .+.++ ..|+||||+|+..|+.    ++|++||++|+++|.+|.+|+||||+|+.. ++      .+++++|+++|+++|
T Consensus        30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~~~~~~~~~~iv~~Ll~~Gadin  108 (186)
T 3t8k_A           30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-GGNDITGTTELCKIFLEKGADIT  108 (186)
T ss_dssp             SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSS
T ss_pred             cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCcchhhHHHHHHHHHHCCCCCC
Confidence            34445 7799999999999985    599999999999999999999999999998 65      689999999999999


Q ss_pred             ccCCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-CCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517           79 AYRPGGRGG-TPLHHAAKRG-----LEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  146 (508)
Q Consensus        79 ~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~  146 (508)
                      .+  |..|+ ||||+|+..+     +.+++++|++ +|++++.+|..|.||||+|+..|+.++|++|++...+++
T Consensus       109 ~~--d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          109 AL--YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             SC--BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             cc--CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99  88999 9999999954     4569999999 999999999999999999999999999999998876655

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=3.9e-25  Score=186.88  Aligned_cols=113  Identities=28%  Similarity=0.335  Sum_probs=100.3

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A   93 (508)
                      +..|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHH
Confidence            56788999999999999999999999999999999999999999987 9999999999999999988  78899999999


Q ss_pred             HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHh
Q 010517           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK  129 (508)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~  129 (508)
                      +..|+.+++++|+++|++++.+|..|.||||+|...
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            999999999999999999999999999999998443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.3e-24  Score=213.15  Aligned_cols=142  Identities=20%  Similarity=0.163  Sum_probs=122.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCChHHHHHHHh--CCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEW------MDKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPGGRGG   87 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~------~d~~G~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (508)
                      .+.++|+.|+..|+.+.|+.|++.|++++.      .|..|.||||+|+..  .|+.+++++|+++|+++|.+  |..|+
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~--d~~G~  227 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--AADGN  227 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC--CTTCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC--CCCCC
Confidence            356789999999999999999999999988      688999999999984  27899999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~  167 (508)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++        .|.|||| +|+..|+
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh-~A~~~g~  298 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLH-VDYSWVI  298 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhH-HHHhcCC
Confidence            999999999999999999999999999999999999999999999999999998875        4789999 8888776


Q ss_pred             H
Q 010517          168 R  168 (508)
Q Consensus       168 ~  168 (508)
                      .
T Consensus       299 ~  299 (301)
T 2b0o_E          299 S  299 (301)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=1e-23  Score=178.09  Aligned_cols=114  Identities=22%  Similarity=0.231  Sum_probs=105.8

Q ss_pred             cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHH
Q 010517           46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV  125 (508)
Q Consensus        46 ~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~  125 (508)
                      .+..|.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus         3 ~~~~~~~~l~~A~~~-~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            3 LGSMCDKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLS   79 (123)
T ss_dssp             ----CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred             cccccchHHHHHHHc-CCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence            356789999999998 9999999999999999998  8899999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517          126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (508)
Q Consensus       126 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~  165 (508)
                      |+..|+.+++++|+++|++++  .+|.+|.|||| +|...
T Consensus        80 A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~  116 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSKGADKT--VKGPDGLTAFE-ATDNQ  116 (123)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HCCCH
T ss_pred             HHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HhCCH
Confidence            999999999999999999999  99999999999 78443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=1.8e-23  Score=210.02  Aligned_cols=147  Identities=21%  Similarity=0.297  Sum_probs=121.3

Q ss_pred             ccCCchHHHHHHHHc-CCHHHHHHHHHcCCCCCccC--CCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517           13 QRQSKDELLYQWVIA-GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP   89 (508)
Q Consensus        13 ~~~~g~t~L~~Aa~~-g~~~~v~~Ll~~g~~~~~~d--~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp   89 (508)
                      .+..+.|+||+|+.. |++++|++||++|+++|..|  ..|.||||+|+.. |+.+++++|+++|+++|.+  |..|+||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~Gadvn~~--d~~G~Tp  271 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA-NSLLACEFLLQNGANVNQA--DSAGRGP  271 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            345678999999999 99999999999999999998  8999999999997 9999999999999999998  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc-ccccccCCCCHHHHHHh
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC-GWLREFYGPSFLEALAP  163 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~g~tpL~~~A~  163 (508)
                      ||+|+..|+.+++++||++|++++.+|..|.||||+|+..|+.+++++|++.+.... ....+..+.|+++ +..
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~-i~~  345 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD-IFR  345 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH-HHH
Confidence            999999999999999999999999999999999999999999999999998874422 1145667888888 443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=4.2e-24  Score=199.90  Aligned_cols=134  Identities=17%  Similarity=0.146  Sum_probs=117.2

Q ss_pred             cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCCcHHH
Q 010517           46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC-GANALVRNDDCHTALG  124 (508)
Q Consensus        46 ~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~TpLh  124 (508)
                      .+..|.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.++|++|++. |++++.+|..|.||||
T Consensus        69 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           69 QAESIDNPLHEAAKR-GNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HEEEESCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             ccccccccccccccc-CcHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            466789999999998 9999999999999999998  88999999999999999999999999 9999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCC
Q 010517          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP  185 (508)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~  185 (508)
                      +|+..|+.+++++|+++|++++  .+|.+|.|||| +|+..++.++++.|+..++.....+
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFD-MATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHH-HCCSHHHHHHHC-------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHH-HhcchhHHHHHHHHhccchhhhccc
Confidence            9999999999999999999999  99999999999 9999999999999999998775444

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=1.3e-25  Score=226.38  Aligned_cols=158  Identities=14%  Similarity=0.041  Sum_probs=135.8

Q ss_pred             cccCCchHHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCC---cccCCCCC
Q 010517           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIELGANI---NAYRPGGR   85 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~---n~~~~d~~   85 (508)
                      .++.++.||||+|++.|+.++|++|+++|+..   +..|..|.||||+|+.. |+.++|++|+++|+++   +..  +..
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~-G~~eiv~~Ll~~gad~~~~~i~--~~~  163 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQ--AEN  163 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHS--HHH
T ss_pred             HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc-CCHHHHHHHHhCCCCccccccC--CCC
Confidence            45677889999999999999999999999832   24456788999999998 9999999999999863   332  222


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCCcHHHHHH-HhCCHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 010517           86 GGTPLHHAAKRGLEPTVRLLLSCGANALV--RNDDCHTALGVAR-IKGHINVVRAIESHICYFCGWLREFYGPSFLEALA  162 (508)
Q Consensus        86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~--~d~~g~TpLh~A~-~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A  162 (508)
                       +||||+|+..|+.++|++|+++|++++.  .|..|.||||+|+ ..|+.++|++|++.|++         |.|||| .|
T Consensus       164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---------~~taL~-~A  232 (376)
T 2aja_A          164 -YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---------LAYAEI-HE  232 (376)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---------HHHHHH-CT
T ss_pred             -CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---------cchHHH-HH
Confidence             8999999999999999999999999887  8889999999999 99999999999997642         779999 99


Q ss_pred             hhcCCHHHHHHhhhCCCCCCC
Q 010517          163 PQLMSRKIWVVVIPCGTANPS  183 (508)
Q Consensus       163 ~~~~~~~i~~~Ll~~g~~~~~  183 (508)
                      +..|+.+++++|+++|++.+.
T Consensus       233 a~~g~~evv~lL~~~ga~~~~  253 (376)
T 2aja_A          233 FEYGEKYVNPFIARHVNRLKE  253 (376)
T ss_dssp             TTTTTTTHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCccccc
Confidence            999999999999999987643

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=3.4e-22  Score=193.63  Aligned_cols=125  Identities=19%  Similarity=0.222  Sum_probs=84.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCC------ccCCCCChHHHHHHHhC--CCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517           18 DELLYQWVIAGDVDAIRALRSQGASLE------WMDKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRPGGRGGTP   89 (508)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~------~~d~~G~TpLh~Aa~~~--g~~~~v~~Ll~~ga~~n~~~~d~~g~tp   89 (508)
                      .++|+.|+..|+.+.++.+++.|++++      ..|..|.||||+|+..+  |+.+++++|+++|+++|.+  |..|+||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~--d~~g~Tp  208 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCCH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc--CCCCCCH
Confidence            456677777777777777777766633      33566777777777642  5667777777777777766  6667777


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517           90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (508)
Q Consensus        90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~  144 (508)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7777777777777777777777777777777777777777777777777666654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=7.8e-25  Score=198.66  Aligned_cols=115  Identities=27%  Similarity=0.234  Sum_probs=108.4

Q ss_pred             CCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC-CCCCcHHHH
Q 010517           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGV  125 (508)
Q Consensus        47 d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~  125 (508)
                      +.+|.||||+|+.. |+.+++++|++ |+++|.+  |..|+||||+|+..|+.+++++|+++|++++.+| ..|.||||+
T Consensus        41 ~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHTT-TSCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHc-CCHHHHHHHHh-cCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            56899999999998 99999999999 9999998  8899999999999999999999999999999998 899999999


Q ss_pred             HHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCH
Q 010517          126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  168 (508)
Q Consensus       126 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~  168 (508)
                      |+..|+.+++++|+++|++++  .+|.+|.|||| +|+..++.
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~  156 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILKT  156 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHHHHT
T ss_pred             HHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHH-HHHHhccC
Confidence            999999999999999999999  99999999999 88765443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=1.4e-21  Score=189.27  Aligned_cols=167  Identities=13%  Similarity=-0.008  Sum_probs=141.3

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHHcCCC-----CCc--------------------------cCCCCChHHHHHHH
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS-----LEW--------------------------MDKEGKTPLIVACM   59 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-----~~~--------------------------~d~~G~TpLh~Aa~   59 (508)
                      -..|.-+.+.|+++...|+..+.+++...-..     ++.                          .+....++|+.|+.
T Consensus        60 ~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~  139 (278)
T 1dcq_A           60 LTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVK  139 (278)
T ss_dssp             TTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHH
T ss_pred             eecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhh
Confidence            34578889999999999998776665432110     000                          00112468999999


Q ss_pred             hCCCHHHHHHHHHcCCCCccc----CCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCH
Q 010517           60 DSGLINVAKTLIELGANINAY----RPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI  132 (508)
Q Consensus        60 ~~g~~~~v~~Ll~~ga~~n~~----~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~  132 (508)
                      . |+.+.++.|++.|++++..    ..|..|+||||+|+..   |+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus       140 ~-~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~  218 (278)
T 1dcq_A          140 T-RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA  218 (278)
T ss_dssp             T-TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             h-cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence            7 9999999999999996532    1267899999999999   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCC
Q 010517          133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (508)
Q Consensus       133 ~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~  181 (508)
                      +++++|+++|++++  .+|.+|.|||| +|+..|+.+++++|+++|++.
T Consensus       219 ~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          219 ECLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCC--CccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999  99999999999 999999999999999999864

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=7.1e-22  Score=193.64  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=124.1

Q ss_pred             CChHHHHHHHhCCCHHHHHHHHHcCCCCcc------cCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCccccCCCCC
Q 010517           50 GKTPLIVACMDSGLINVAKTLIELGANINA------YRPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCH  120 (508)
Q Consensus        50 G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~------~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~  120 (508)
                      +.++||.|+.. |+.+.++.|++.|++++.      .  +..|+||||+|+..   |+.+++++|+++|++++.+|..|.
T Consensus       151 ~~~~L~~A~~~-g~~~~v~~ll~~g~d~~~~~~~~~~--~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICN-RDLLSVLEAFANGQDFGQPLPGPDA--QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSCEECSSS--CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             hHHHHhhhhhc-cCHHHHHHHHhcCCcccccCCCccc--CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            34679999998 999999999999999987      4  78999999999997   899999999999999999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccC
Q 010517          121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (508)
Q Consensus       121 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~  200 (508)
                      ||||+|+..|+.+++++|+++|++++  .+|.+|.|||| +|+..++.+++++|+++|++.      +.++++.++..+.
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~~~~~iv~~Ll~~ga~~------g~tpLh~A~~~g~  298 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAGT------FAFPLHVDYSWVI  298 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCS--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHHT------TSSCCC-------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhcCCC------CCChhHHHHhcCC
Confidence            99999999999999999999999999  99999999999 999999999999999999873      5677887776554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=4.9e-22  Score=159.03  Aligned_cols=91  Identities=38%  Similarity=0.558  Sum_probs=51.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHc
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~   96 (508)
                      |+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARN   78 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHc
Confidence            45555555555555555555555555555555555555555554 5555555555555555555  45555555555555


Q ss_pred             CCHHHHHHHHHCCC
Q 010517           97 GLEPTVRLLLSCGA  110 (508)
Q Consensus        97 g~~~~v~~Ll~~ga  110 (508)
                      |+.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            55555555555554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=9.6e-22  Score=157.32  Aligned_cols=93  Identities=39%  Similarity=0.608  Sum_probs=85.8

Q ss_pred             CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q 010517           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  128 (508)
Q Consensus        49 ~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~  128 (508)
                      +|+||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~n~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            488999999998 9999999999999999988  8899999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHcCCc
Q 010517          129 KGHINVVRAIESHICY  144 (508)
Q Consensus       129 ~g~~~~v~~Ll~~ga~  144 (508)
                      .|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            9999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=2.8e-22  Score=167.06  Aligned_cols=107  Identities=30%  Similarity=0.410  Sum_probs=62.9

Q ss_pred             ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH   92 (508)
Q Consensus        13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~   92 (508)
                      +|++|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~tpl~~   81 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNAR--SKDGNTPEHL   81 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTTTCCTTCC--CTTCCCTTHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCCHHHH
Confidence            355566666666666666666666666666666666666666666654 5566666666666666555  5555666666


Q ss_pred             HHHcCCHHHHHHHHHCCCCccccCCCCCcH
Q 010517           93 AAKRGLEPTVRLLLSCGANALVRNDDCHTA  122 (508)
Q Consensus        93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp  122 (508)
                      |+..|+.+++++|+++|++++.++..|.||
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            666666666666666666666555555554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.86  E-value=7.2e-23  Score=206.30  Aligned_cols=174  Identities=11%  Similarity=0.034  Sum_probs=143.7

Q ss_pred             CchHHHHHHHH-cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCccc-CCCCCCCcHHHHH
Q 010517           16 SKDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHA   93 (508)
Q Consensus        16 ~g~t~L~~Aa~-~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~-~~d~~g~tpLh~A   93 (508)
                      .+.+++++|.. .++.++++.|+++|.+.       .||||+|+.. |+.++|++|+++|+..... +.+..|.||||+|
T Consensus        64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~-G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A  135 (376)
T 2aja_A           64 RQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAIT-GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA  135 (376)
T ss_dssp             HHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHH-CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHc-CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH
Confidence            35678888887 57889999999987764       4999999998 9999999999999833111 1145678999999


Q ss_pred             HHcCCHHHHHHHHHCCCCc---cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccc--cccCCCCHHHHHHh-hcCC
Q 010517           94 AKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL--REFYGPSFLEALAP-QLMS  167 (508)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~---~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~--~~~~g~tpL~~~A~-~~~~  167 (508)
                      +.+|+.++|++|+++|+++   +..+.+ .||||+|+..|+.++|++|+++|++++  .  .|..|.|||| +|+ ..|+
T Consensus       136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~--~~~~d~~g~TpL~-~Aa~~~G~  211 (376)
T 2aja_A          136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA--TAMIQAENYYAFR-WAAVGRGH  211 (376)
T ss_dssp             HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH--HHHHHHHHHHHHH-HHHSTTCC
T ss_pred             HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc--hhccCCCCCCHHH-HHHHHCCC
Confidence            9999999999999999862   333333 899999999999999999999999987  5  8889999999 999 9999


Q ss_pred             HHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010517          168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  208 (508)
Q Consensus       168 ~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~  208 (508)
                      .+++++|+++|+       .+.++++.++..++...+..|.
T Consensus       212 ~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~  245 (376)
T 2aja_A          212 HNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIA  245 (376)
T ss_dssp             HHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHH
T ss_pred             HHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHH
Confidence            999999999875       3788899999888877554443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=9.8e-22  Score=163.73  Aligned_cols=109  Identities=34%  Similarity=0.499  Sum_probs=102.6

Q ss_pred             ccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHH
Q 010517           45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG  124 (508)
Q Consensus        45 ~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh  124 (508)
                      .+|.+|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus         4 ~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHH-TCHHHHHHHTTTTCCSSCC--CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            5789999999999998 9999999999999999998  889999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCcccccccccCCCCHH
Q 010517          125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFL  158 (508)
Q Consensus       125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL  158 (508)
                      +|+..|+.+++++|+++|++++  .++..|.+|-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVN--ARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHH--HHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCC--cCCccccccc
Confidence            9999999999999999999999  8899998874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=1.2e-21  Score=186.27  Aligned_cols=168  Identities=20%  Similarity=0.085  Sum_probs=137.9

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHH
Q 010517           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA   94 (508)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~   94 (508)
                      ..+.+++++++..|+.+.++.+...+.+   .+.+|.||||+|+.. |+.+++++|++ |+++|.+  |..|+||||+|+
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~   85 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVA   85 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHH---HHHHHHHHHHHHHTT-TCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHH
T ss_pred             CCCccHHHHHHHcCCCcccccccccccc---cccCCCCHHHHHHHc-CCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHH
Confidence            3455666666666766665555544433   345789999999997 99999999999 9999998  889999999999


Q ss_pred             HcCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517           95 KRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (508)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~  173 (508)
                      ..|+.++|++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..+.      
T Consensus        86 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~-~A~~~~~------  156 (244)
T 3ui2_A           86 GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILK------  156 (244)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHHT------
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHH-HHHHHHh------
Confidence            9999999999999999999998 889999999999999999999999999999  99999999999 7765222      


Q ss_pred             hhhCCCCCCCCCccccccccccccccChHHHHHHHH
Q 010517          174 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWK  209 (508)
Q Consensus       174 Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~  209 (508)
                         .        ....++++.+++.+....+..|..
T Consensus       157 ---~--------~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          157 ---T--------TPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             ---T--------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---c--------cCCCCHHHHHHHcChHHHHHHHHH
Confidence               1        135667777777776665554444

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=6e-21  Score=191.57  Aligned_cols=132  Identities=19%  Similarity=0.131  Sum_probs=121.2

Q ss_pred             cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHH
Q 010517           46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV  125 (508)
Q Consensus        46 ~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~  125 (508)
                      .+..+.|+||+|+...|+.+++++|+++|+++|..+.+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            34456789999997448999999999999999998433899999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC
Q 010517          126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (508)
Q Consensus       126 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~  180 (508)
                      |+..|+.+++++|+++|++++  .+|.+|.|||| +|+..++.+++++|+..+..
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~-~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLG--ARDSEGRDPLT-IAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999  99999999999 99999999999999988753

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=6.5e-19  Score=145.52  Aligned_cols=92  Identities=30%  Similarity=0.414  Sum_probs=60.0

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHH
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpL   90 (508)
                      ...|.+|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+|||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~tpl   94 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQ--DKFGKTAF   94 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccCCCcHH
Confidence            34466666666666666666666666666666666666666666666665 6666666666666666666  56666666


Q ss_pred             HHHHHcCCHHHHHHH
Q 010517           91 HHAAKRGLEPTVRLL  105 (508)
Q Consensus        91 h~A~~~g~~~~v~~L  105 (508)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            666666666666655

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=1.2e-18  Score=143.92  Aligned_cols=93  Identities=27%  Similarity=0.369  Sum_probs=82.8

Q ss_pred             CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcH
Q 010517           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTA  122 (508)
Q Consensus        43 ~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp  122 (508)
                      +...|.+|.|+||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        17 ~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~i~~~--d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARA-GQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA   93 (110)
T ss_dssp             -----CCHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccccCCccchHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence            345678899999999998 9999999999999999988  7899999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHH
Q 010517          123 LGVARIKGHINVVRAI  138 (508)
Q Consensus       123 Lh~A~~~g~~~~v~~L  138 (508)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999887

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.49  E-value=9.6e-15  Score=106.74  Aligned_cols=56  Identities=27%  Similarity=0.790  Sum_probs=50.6

Q ss_pred             CccccccccccCCceEEe--CCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517          453 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  508 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~  508 (508)
                      ....|.||++.+.+++++  ||||.++|..|+.+++..++.||+||++|.++++||.+
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s   63 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA   63 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence            346999999999999888  99999669999999997777899999999999999975

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.49  E-value=9.5e-15  Score=107.12  Aligned_cols=56  Identities=34%  Similarity=0.823  Sum_probs=51.4

Q ss_pred             CccccccccccCCceEEe--CCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517          453 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  508 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~  508 (508)
                      ++..|.||++.+.+++++  ||||.++|..|+..++..+..||+||++|.+++++|.+
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~   64 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP   64 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence            446899999999999998  99999779999999998778899999999999999974

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.4e-13  Score=101.91  Aligned_cols=53  Identities=28%  Similarity=0.734  Sum_probs=47.3

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeee
Q 010517          451 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  507 (508)
Q Consensus       451 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~  507 (508)
                      ..+...|.||++.+.+++++||||.++|..|+..++    .||+||++|..+++||.
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~   64 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSG   64 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCS
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC----CCCCCCcchhceEEeec
Confidence            445679999999999999999999955999999765    49999999999999985

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.25  E-value=1.3e-12  Score=99.85  Aligned_cols=51  Identities=33%  Similarity=0.978  Sum_probs=46.4

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeee
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  507 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~  507 (508)
                      +...|.||++.+.+++++||||.++|..|+..++.    ||+||.+|..++++|.
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~----CP~Cr~~i~~~~~i~~   67 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQS----CPVCRSRVEHVQHVYL   67 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSB----CTTTCCBCCEEEECBC
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCc----CCCCCchhhCeEEEEe
Confidence            34689999999999999999999559999998864    9999999999999985

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.20  E-value=3.4e-12  Score=96.52  Aligned_cols=52  Identities=29%  Similarity=0.750  Sum_probs=46.2

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  508 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~  508 (508)
                      ++..|+||++.+.+++++||||..+|..|+..|.    .||+||++|.+.+++|.+
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S   74 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKILMS   74 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS----BCTTTCCBCSEEEECBC-
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCc----cCCCcCcCccCcEEEeeC
Confidence            4468999999999999999999933999999884    599999999999999974

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=3.9e-12  Score=96.52  Aligned_cols=52  Identities=29%  Similarity=0.783  Sum_probs=46.0

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  508 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~  508 (508)
                      +...|+||++.+.+++++||||.++|..|+..+.    .||+||++|...++||.+
T Consensus        24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S   75 (75)
T 2ecg_A           24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIFMS   75 (75)
T ss_dssp             HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCS----BCTTTCCBCCCCCBCCCC
T ss_pred             CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCC----CCccCCceecCcEEEecC
Confidence            3468999999999999999999933999998764    499999999999999975

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=4.9e-11  Score=89.45  Aligned_cols=49  Identities=27%  Similarity=0.670  Sum_probs=44.0

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      .+...|+||++.+.+++.+||||.| |..|+..|...+..||+||..|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence            3457999999999999999999999 999999988777889999999863

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=8.1e-11  Score=90.74  Aligned_cols=52  Identities=23%  Similarity=0.491  Sum_probs=45.8

Q ss_pred             CCCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccce
Q 010517          450 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  502 (508)
Q Consensus       450 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  502 (508)
                      +..+...|+||++.+.+++.++|||.| |..|+..|......||+||.++...
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGGI   62 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCcccccc
Confidence            344557999999999999999999999 9999999988778899999998643

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=5.4e-11  Score=88.99  Aligned_cols=53  Identities=23%  Similarity=0.729  Sum_probs=46.4

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEee
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY  506 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~  506 (508)
                      .+...|+||++.+.+ +.+||||.| |..|+..|...+..||+||+++.....+|
T Consensus        13 ~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   65 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS   65 (70)
T ss_dssp             CCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred             CCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence            345799999999999 888999998 99999999887788999999998766554

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.2e-10  Score=87.61  Aligned_cols=52  Identities=23%  Similarity=0.507  Sum_probs=45.6

Q ss_pred             CCCCccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccce
Q 010517          450 DDGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  502 (508)
Q Consensus       450 ~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  502 (508)
                      +..+...|+||++.+.+++.+ +|||.| |..|+..|...+..||+||+++...
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence            344567999999999999887 999999 9999999987778899999998753

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.05  E-value=6e-11  Score=86.97  Aligned_cols=54  Identities=35%  Similarity=0.771  Sum_probs=46.5

Q ss_pred             CccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEeee
Q 010517          453 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLYT  507 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~~  507 (508)
                      +...|+||++...+.       +.++|||.| |..|+..|...+..||+||+++.  ++++||.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l   64 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIYI   64 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence            346899999987664       788999999 99999999888889999999997  5777773

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.05  E-value=4.5e-11  Score=89.66  Aligned_cols=53  Identities=36%  Similarity=0.803  Sum_probs=46.0

Q ss_pred             CccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010517          453 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  506 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~  506 (508)
                      +...|+||++...+.       +.++|||.| |..|+..|...+..||+||+++.  ++++||
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence            447999999997765       888999999 99999999888889999999997  466666

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=86.99  Aligned_cols=49  Identities=37%  Similarity=0.826  Sum_probs=42.7

Q ss_pred             CCccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      .+...|+||++.+.+.       +.++|||.| |..|+..|...+..||+||.+|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence            3457999999987765       888999999 999999998878899999998864

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.02  E-value=1.1e-10  Score=86.76  Aligned_cols=52  Identities=27%  Similarity=0.786  Sum_probs=45.9

Q ss_pred             ccccccccccCCc-eEEeCCCCchhhHHhHHHHhccCCccccccccccceeEee
Q 010517          454 SSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY  506 (508)
Q Consensus       454 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~  506 (508)
                      ...|+||++...+ ++.+||||.| |..|+..|...+..||+||.++...++.+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred             CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence            3689999999988 4788999998 99999999887889999999998877654

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.00  E-value=3.1e-10  Score=84.49  Aligned_cols=53  Identities=23%  Similarity=0.621  Sum_probs=44.5

Q ss_pred             CCCccccccccccC---CceEEeCCCCchhhHHhHHHHhccCCccccccccccceeE
Q 010517          451 DGSSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  504 (508)
Q Consensus       451 ~~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~  504 (508)
                      ......|+||++.+   ..++.+||||.| |..|+..|...+..||+||..|...+.
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            44557999998876   457888999999 999999998888889999999976543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=4.1e-10  Score=84.85  Aligned_cols=49  Identities=27%  Similarity=0.739  Sum_probs=42.8

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhc---cCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~Cr~~i~~  501 (508)
                      .+...|+||++.+.+++.++|||.| |..|+..|..   ....||+||+++..
T Consensus        18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            3457999999999999999999999 9999999986   34579999999863

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.98  E-value=1.9e-10  Score=98.28  Aligned_cols=49  Identities=33%  Similarity=0.775  Sum_probs=44.5

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccccee
Q 010517          454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  503 (508)
Q Consensus       454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i  503 (508)
                      +..|+||++.+.+++.+||||.| |..|+..|...+..||+||.+|....
T Consensus        53 ~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~  101 (138)
T 4ayc_A           53 ELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT  101 (138)
T ss_dssp             HSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred             cCCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence            35799999999999999999999 99999999888889999999997643

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=3e-10  Score=85.85  Aligned_cols=54  Identities=26%  Similarity=0.501  Sum_probs=44.3

Q ss_pred             CCCccccccccccCC---ceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010517          451 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  505 (508)
Q Consensus       451 ~~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i  505 (508)
                      ......|.||++.+.   ..+.+||||.| |..|+..|...+..||+||++|....++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCccccccccc
Confidence            345579999999864   44556999999 9999999988888999999999876544

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.94  E-value=4.8e-10  Score=88.37  Aligned_cols=49  Identities=35%  Similarity=0.719  Sum_probs=43.0

Q ss_pred             CCccccccccccCCc---eEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      +++..|+||++.+..   ++.+||||.| |..|+..|...+..||+||..+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence            355799999998776   7788999999 999999999888899999998864

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.94  E-value=3.8e-10  Score=79.88  Aligned_cols=46  Identities=33%  Similarity=0.738  Sum_probs=41.0

Q ss_pred             ccccccccccCCc----eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          454 SSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       454 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      ...|+||++...+    ++.++|||.| |..|+..|...+..||+||++|.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence            4689999998755    8889999999 99999999887788999999875

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.93  E-value=5e-10  Score=84.57  Aligned_cols=49  Identities=22%  Similarity=0.613  Sum_probs=43.0

Q ss_pred             CCCccccccccccCCceEEeC-CCCchhhHHhHHHHhccC--Ccccccccccc
Q 010517          451 DGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKIN  500 (508)
Q Consensus       451 ~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~  500 (508)
                      ..++..|+||++.+.+++.++ |||.| |..|+..|...+  ..||+||+++.
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           12 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             SCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            345579999999999999999 99999 999999998754  58999999864

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.92  E-value=4.7e-10  Score=85.74  Aligned_cols=50  Identities=30%  Similarity=0.653  Sum_probs=41.8

Q ss_pred             CCCccccccccccCC---ceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          451 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       451 ~~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      ..+...|+||++.+.   .++.++|||.| |..|+.+|...+..||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence            345579999988764   44667999999 999999998877899999999874

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=9.4e-10  Score=86.16  Aligned_cols=49  Identities=31%  Similarity=0.651  Sum_probs=42.8

Q ss_pred             CCCccccccccccCCc----eEEeCCCCchhhHHhHHHHhccC---Ccccccccccc
Q 010517          451 DGSSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN  500 (508)
Q Consensus       451 ~~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~  500 (508)
                      ..+...|+||++.+.+    ++.++|||.| |..|+..|...+   ..||+||.++.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            3455799999999988    9999999999 999999998764   68999999875

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.92  E-value=3.7e-10  Score=85.74  Aligned_cols=55  Identities=27%  Similarity=0.655  Sum_probs=43.3

Q ss_pred             CCCccccccccccC--CceEEeC--CCCchhhHHhHHHHhcc-CCccccccccccceeEee
Q 010517          451 DGSSSSCVICWEAP--VEGACVP--CGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRLY  506 (508)
Q Consensus       451 ~~~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~i~i~  506 (508)
                      ..++..|+||++..  .+.+++|  |||.| |..|+.+++.. ...||.||+++.....+|
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~   67 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY   67 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred             cccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence            34557999999976  4556666  99999 99999998753 467999999998655444

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=5.6e-10  Score=82.29  Aligned_cols=49  Identities=22%  Similarity=0.563  Sum_probs=42.8

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhc-cCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~  501 (508)
                      .+...|+||++...+++.++|||.| |..|+..|.. .+..||+||+++..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            3457999999999999999999999 9999999984 45689999999864

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.91  E-value=7.4e-10  Score=87.58  Aligned_cols=50  Identities=22%  Similarity=0.597  Sum_probs=43.1

Q ss_pred             CCCCccccccccccCCceEEeC-CCCchhhHHhHHHHhccC--Ccccccccccc
Q 010517          450 DDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKIN  500 (508)
Q Consensus       450 ~~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~  500 (508)
                      ...++..|+||++.+.+++.+| |||.| |..|+..+....  ..||+||.++.
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            3455689999999999999999 99999 999999987643  47999999973

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.91  E-value=9.8e-10  Score=85.42  Aligned_cols=48  Identities=33%  Similarity=0.737  Sum_probs=42.8

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc------CCcccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKIN  500 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~  500 (508)
                      .+...|+||++.+.+++.++|||.| |..|+..|...      ...||+||.++.
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            3457999999999999999999999 99999998776      568999999986

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.90  E-value=5e-10  Score=79.25  Aligned_cols=47  Identities=23%  Similarity=0.677  Sum_probs=40.8

Q ss_pred             CccccccccccCCc---eEEeC-CCCchhhHHhHHHHhccCCcccccccccc
Q 010517          453 SSSSCVICWEAPVE---GACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      +...|+||++...+   ++.+| |||.| |..|+..|...+..||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence            34689999999876   77777 99999 99999999888889999998763

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=6.5e-10  Score=84.22  Aligned_cols=48  Identities=23%  Similarity=0.605  Sum_probs=41.2

Q ss_pred             CccccccccccCCce---EEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          453 SSSSCVICWEAPVEG---ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      +...|+||++.+...   +.+||||.| |..|+..|...+..||+||+.+..
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence            447899999886543   778999999 999999998888899999998864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.87  E-value=1.4e-09  Score=83.04  Aligned_cols=49  Identities=16%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  501 (508)
                      .++..|+||++.+.+++.++|||.| |..|+.+|... +..||+||+++..
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             cccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            3457999999999999999999999 99999999876 6789999999863

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.86  E-value=3.8e-10  Score=86.51  Aligned_cols=49  Identities=31%  Similarity=0.725  Sum_probs=42.7

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-------CCcccccccccc
Q 010517          451 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-------KGDCPVCRTKIN  500 (508)
Q Consensus       451 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~CP~Cr~~i~  500 (508)
                      ..+...|+||++.+.+++.+||||.| |..|+..|...       ...||+||.++.
T Consensus         9 ~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A            9 VQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             cccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            34557999999999999999999999 99999988765       457999999986

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=1.1e-09  Score=85.14  Aligned_cols=48  Identities=33%  Similarity=0.794  Sum_probs=42.6

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc------CCcccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKIN  500 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~  500 (508)
                      .+...|+||++.+.+++.++|||.| |..|+..|...      ...||+||..+.
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            3457999999999999999999999 99999998765      568999999987

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.82  E-value=1.2e-09  Score=87.71  Aligned_cols=47  Identities=26%  Similarity=0.728  Sum_probs=43.0

Q ss_pred             CccccccccccCCceEE-eCCCCchhhHHhHHHHhccC-Ccccccccccc
Q 010517          453 SSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKK-GDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~  500 (508)
                      ++..|+||++.+.+++. ++|||.| |..|+..|.... ..||+||.++.
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~   69 (100)
T 3lrq_A           21 EVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ   69 (100)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence            45799999999999999 9999999 999999998876 68999999985

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=3.8e-09  Score=76.98  Aligned_cols=43  Identities=28%  Similarity=0.773  Sum_probs=38.0

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc---CCccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK---KGDCPVC  495 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~C  495 (508)
                      .++..|+||++.+.+++.++|||.| |..|+.+|...   +..||+|
T Consensus        18 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence            4557999999999999999999999 99999999873   4579998

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.78  E-value=1.9e-09  Score=79.10  Aligned_cols=47  Identities=28%  Similarity=0.676  Sum_probs=38.0

Q ss_pred             ccccccccc-cCCce----EEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517          454 SSSCVICWE-APVEG----ACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  501 (508)
Q Consensus       454 ~~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  501 (508)
                      +..|+||++ ...+.    +.++|||.| |..|+.++... ...||+||+++..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence            368999999 54444    567999999 99999999554 4579999999963

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.77  E-value=2.3e-09  Score=89.75  Aligned_cols=48  Identities=25%  Similarity=0.616  Sum_probs=42.5

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~  501 (508)
                      +...|+||++.+.+++.+||||.| |..|+..|.... ..||+||.++..
T Consensus        51 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence            346899999999999999999999 999999988754 489999999965

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=3.5e-09  Score=75.71  Aligned_cols=43  Identities=33%  Similarity=0.774  Sum_probs=37.3

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhc---cCCccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVC  495 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~C  495 (508)
                      .+...|+||++.+.+++.++|||.| |..|+..|..   .+..||+|
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence            3457999999999999999999999 9999999943   34679998

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.76  E-value=1.3e-09  Score=106.70  Aligned_cols=52  Identities=29%  Similarity=0.876  Sum_probs=45.6

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  508 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~  508 (508)
                      ++..|+||++.+.+++++||||.++|..|+..+.    .||+||.+|...++||.+
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~s  345 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFLS  345 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC--
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC----cCCCCCCCccCeEEeecC
Confidence            4479999999999999999999944999999884    499999999999999964

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.76  E-value=2.9e-09  Score=85.33  Aligned_cols=48  Identities=25%  Similarity=0.620  Sum_probs=43.5

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      +...|+||++.+.+++.+ +|||.| |..|+..|...+..||+||.++..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence            446899999999999988 999999 999999998877889999999873

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.75  E-value=4.7e-09  Score=85.58  Aligned_cols=48  Identities=21%  Similarity=0.646  Sum_probs=43.9

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      +...|+||++.+.+++.+ +|||.| |..|+..|...+..||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence            457999999999999998 999999 999999998877889999999874

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.74  E-value=9.2e-09  Score=79.65  Aligned_cols=49  Identities=10%  Similarity=0.015  Sum_probs=44.8

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      .++..|+||++.+.++|.++|||.| |..|+..++.....||+||.++..
T Consensus        12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence            4567999999999999999999999 999999999877899999999863

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.73  E-value=7.1e-10  Score=78.66  Aligned_cols=45  Identities=24%  Similarity=0.540  Sum_probs=38.9

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      .+...|+||++.+.+++.+||||.| |..|+..+   ...||+||+.+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcc-cHHHHccC---CCCCCcCCcEee
Confidence            3457899999999999999999999 99998763   347999999886

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.72  E-value=6.6e-09  Score=102.22  Aligned_cols=50  Identities=34%  Similarity=0.792  Sum_probs=45.2

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhc-cCCccccccccccceeEe
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRL  505 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~~i~i  505 (508)
                      ..|+||++...+++.+||||.| |..|+..|.. ....||+||++|.....+
T Consensus       333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i  383 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI  383 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred             CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence            6899999999999999999999 9999999877 467899999999876655

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.69  E-value=2.6e-09  Score=88.21  Aligned_cols=48  Identities=35%  Similarity=0.807  Sum_probs=42.5

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  501 (508)
                      ++..|+||++.+.+++.++|||.| |..|+..|... +..||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence            457999999999999999999999 99999998765 5689999999863

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.69  E-value=5.9e-09  Score=90.04  Aligned_cols=48  Identities=31%  Similarity=0.630  Sum_probs=42.8

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCC-ccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~  501 (508)
                      +...|+||++.+.+++.+||||.| |..|+..+..... .||+||.++..
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQ  125 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCC
Confidence            446899999999999999999999 9999999987643 79999999874

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.67  E-value=2e-08  Score=79.89  Aligned_cols=49  Identities=10%  Similarity=-0.002  Sum_probs=44.6

Q ss_pred             CCccccccccccCCceEEeCCC-CchhhHHhHHHHhccCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      .++..|+||++.+.++|.++|| |.| |..|+.+++.....||+||.++..
T Consensus        20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence            3557999999999999999999 999 999999999877789999999863

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.67  E-value=1.2e-08  Score=84.52  Aligned_cols=49  Identities=31%  Similarity=0.602  Sum_probs=43.3

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~  501 (508)
                      .+...|+||++.+.+++.++|||.| |..|+..|.... ..||+||.++..
T Consensus        16 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            4557999999999999999999999 999999987664 489999999874

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=1.1e-08  Score=78.41  Aligned_cols=47  Identities=21%  Similarity=0.535  Sum_probs=38.4

Q ss_pred             CccccccccccCCc--------------eEEe-CCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          453 SSSSCVICWEAPVE--------------GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      ++..|.||++.+.+              ++.+ +|||.| |..|+.+|...+..||+||+++.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcc
Confidence            34578888887754              4444 599999 99999999888889999999875

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.66  E-value=1.8e-08  Score=80.51  Aligned_cols=49  Identities=10%  Similarity=0.032  Sum_probs=44.8

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      .++..|+||++.+.++|.+||||.| |..|+..|+.....||+||.++..
T Consensus        27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence            4567999999999999999999999 999999999877889999999863

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.64  E-value=1e-08  Score=84.46  Aligned_cols=46  Identities=26%  Similarity=0.616  Sum_probs=38.0

Q ss_pred             cccccccccCCce------------------EEeCCCCchhhHHhHHHHhc-----cCCccccccccccc
Q 010517          455 SSCVICWEAPVEG------------------ACVPCGHMAGCMSCLSEIKA-----KKGDCPVCRTKINQ  501 (508)
Q Consensus       455 ~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~~~-----~~~~CP~Cr~~i~~  501 (508)
                      ..|+||++.+...                  ..++|+|.| |..|+..|..     .+..||+||+.+..
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            5899999997543                  378999999 9999999983     34689999998864

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.64  E-value=1e-08  Score=90.34  Aligned_cols=48  Identities=27%  Similarity=0.619  Sum_probs=42.8

Q ss_pred             CCccccccccccCCceEEe-CCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  500 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~  500 (508)
                      .+...|+||++.+.+++.+ +|||.| |..|+..|... +..||+||.++.
T Consensus        52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence            3456999999999999988 999999 99999999876 668999999985

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.61  E-value=1.6e-08  Score=86.30  Aligned_cols=47  Identities=23%  Similarity=0.511  Sum_probs=41.8

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKI  499 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i  499 (508)
                      .+...|+||++.+.+++.++|||.| |..|+..|.... ..||+||.++
T Consensus        29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence            3557999999999999999999999 999999998754 4899999975

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.61  E-value=6.8e-09  Score=85.23  Aligned_cols=47  Identities=30%  Similarity=0.762  Sum_probs=41.5

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccC---Cccccccccccc
Q 010517          454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKINQ  501 (508)
Q Consensus       454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~~  501 (508)
                      ...|+||++.+.+++.+||||.| |..|+..|...+   ..||+||.++..
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            46899999999999999999999 999999988754   379999999863

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.59  E-value=1.8e-08  Score=83.20  Aligned_cols=48  Identities=27%  Similarity=0.529  Sum_probs=43.2

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  501 (508)
                      +...|+||++.+.+++.++|||.| |..|+..|... ...||+||.++..
T Consensus        22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            446899999999999999999999 99999999876 5689999999864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.58  E-value=2e-08  Score=85.03  Aligned_cols=53  Identities=36%  Similarity=0.803  Sum_probs=45.1

Q ss_pred             CccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010517          453 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  506 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~  506 (508)
                      ++..|+||++.+.+.       +.++|||.| |..|+.+|...+..||+||+.+.  ...++|
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~   67 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY   67 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTTTCEEECB
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCccccccccc
Confidence            346899999998776       889999999 99999999888889999999997  344444

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.56  E-value=2.4e-08  Score=84.61  Aligned_cols=53  Identities=36%  Similarity=0.803  Sum_probs=46.3

Q ss_pred             CccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010517          453 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  506 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~  506 (508)
                      +...|+||++.+.+.       +..+|||.| |..|+.+|...++.||+||.++.  +.+++|
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence            346899999987664       888999999 99999999988889999999997  577777

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.46  E-value=1e-07  Score=76.77  Aligned_cols=47  Identities=21%  Similarity=0.457  Sum_probs=39.3

Q ss_pred             CccccccccccCCc------------------eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          453 SSSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      +...|.||++.+..                  ++.++|+|.| |..|+..|...+..||+||+.+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence            34689999987653                  4667999999 99999999888889999999853

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.42  E-value=2.5e-08  Score=82.41  Aligned_cols=45  Identities=31%  Similarity=0.693  Sum_probs=40.7

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      +...|+||++.+.+++.+ +|||.| |..|+..+..  ..||+||.++.
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc--CCCcCCCCcCc
Confidence            457999999999999999 999999 9999999875  57999999985

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.34  E-value=2.4e-07  Score=89.05  Aligned_cols=48  Identities=23%  Similarity=0.188  Sum_probs=42.6

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCC-ccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~  501 (508)
                      ....|+||++.+.++|.+||||.| |..|+..+...++ .||+||.++..
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence            447999999999999999999999 9999999987643 49999999863

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.31  E-value=2.6e-07  Score=81.75  Aligned_cols=49  Identities=31%  Similarity=0.602  Sum_probs=43.2

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~  501 (508)
                      .+...|+||++.+.+++.++|||.| |..|+..|...+ ..||+||.++..
T Consensus        16 ~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence            4557999999999999999999999 999999987653 489999999874

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.28  E-value=4.2e-07  Score=79.91  Aligned_cols=48  Identities=21%  Similarity=0.123  Sum_probs=42.9

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~  501 (508)
                      +...|+||++.+.++|.+||||.| |..|+..+.... ..||+||.++..
T Consensus       105 ~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          105 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             HhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            457999999999999999999999 999999998764 369999999863

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=5.4e-07  Score=71.10  Aligned_cols=45  Identities=22%  Similarity=0.399  Sum_probs=39.3

Q ss_pred             CccccccccccCCceEEeC-CCCchhhHHhHHHHhccC------Ccccc--cccc
Q 010517          453 SSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK------GDCPV--CRTK  498 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~------~~CP~--Cr~~  498 (508)
                      ++..|+||++.+.++|.++ |||.| |..|+..|+...      ..||+  |+..
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            4478999999999999996 99999 999999998653      47999  9865

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.24  E-value=1.6e-07  Score=76.64  Aligned_cols=46  Identities=22%  Similarity=0.474  Sum_probs=0.4

Q ss_pred             ccccccccccCCc------------------eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          454 SSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       454 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      ...|.||++.+.+                  ++..+|+|.| |..|+..|...+..||+||+++.
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence            3689999988754                  2335999999 99999999887788999999853

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=1.8e-06  Score=65.53  Aligned_cols=48  Identities=23%  Similarity=0.500  Sum_probs=38.9

Q ss_pred             CccccccccccC--CceEEeCCC-----CchhhHHhHHHHhccC--Cccccccccccc
Q 010517          453 SSSSCVICWEAP--VEGACVPCG-----HMAGCMSCLSEIKAKK--GDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CP~Cr~~i~~  501 (508)
                      +...|.||++..  .+.+++||.     |.| +..|+.+|...+  ..||+||..+.-
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            446899999764  355678996     999 999999997764  489999998863

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.00  E-value=6.2e-06  Score=76.09  Aligned_cols=47  Identities=17%  Similarity=0.316  Sum_probs=41.3

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccC--Ccccc--cccccc
Q 010517          453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKK--GDCPV--CRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~CP~--Cr~~i~  500 (508)
                      .+..|+||++.+.++|.. .|||.| |..|+..++...  ..||+  ||+.+.
T Consensus       180 ~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          180 IELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             CCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             eeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            446999999999999985 999999 999999998753  47999  999875

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.97  E-value=4e-06  Score=60.01  Aligned_cols=51  Identities=14%  Similarity=0.256  Sum_probs=45.2

Q ss_pred             cccccccccCCceEEe-CCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010517          455 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  506 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~  506 (508)
                      ..|+||++...++|.. +|||.| |..|+.+|...++.||+++.++.  +.++++
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred             EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence            5899999999999999 999999 99999999877678999999985  456554

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.81  E-value=4.9e-06  Score=65.57  Aligned_cols=44  Identities=25%  Similarity=0.558  Sum_probs=34.2

Q ss_pred             ccccccccccCCceEE---eCCCCchhhHHhHHHHhcc--------CCcccc--cccc
Q 010517          454 SSSCVICWEAPVEGAC---VPCGHMAGCMSCLSEIKAK--------KGDCPV--CRTK  498 (508)
Q Consensus       454 ~~~C~iC~~~~~~~~~---~pCgH~~~C~~C~~~~~~~--------~~~CP~--Cr~~  498 (508)
                      ...|.||++.......   .+|||.| |..|+......        ...||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            3689999998765433   3799999 99999887652        137999  9988

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.66  E-value=3.8e-05  Score=59.19  Aligned_cols=49  Identities=22%  Similarity=0.486  Sum_probs=36.9

Q ss_pred             ccccccccCCce-EEeCCCCchhhHHhHHHHhcc-CCccccccccccceeEe
Q 010517          456 SCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRL  505 (508)
Q Consensus       456 ~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~i~i  505 (508)
                      .|.+|--..... ..+||.|.| |..|+..+... .+.||.||.+|..+-++
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~   53 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC   53 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred             ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence            577775554333 355999999 99999998754 57899999999876554

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.52  E-value=0.00011  Score=54.44  Aligned_cols=49  Identities=22%  Similarity=0.630  Sum_probs=39.4

Q ss_pred             CCccccccccccCCce-EEeCCCCchhhHHhHHHHhccC--Cccccccccccc
Q 010517          452 GSSSSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~~  501 (508)
                      +....|.||++..... ....|+|.| ...|+.+|.+.+  ..||+||+....
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            3447999999986533 344899999 999999998776  789999998763

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.25  E-value=0.00013  Score=51.75  Aligned_cols=49  Identities=27%  Similarity=0.434  Sum_probs=37.7

Q ss_pred             CCccccccccccCCceEEeCCCCc----hhhHHhHHHHhcc--CCcccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHM----AGCMSCLSEIKAK--KGDCPVCRTKIN  500 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CP~Cr~~i~  500 (508)
                      ++...|.||++...+..+.||.+.    ++...|+.+|...  +..||+||..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            345799999987666667897752    4499999999764  468999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.94  E-value=0.00018  Score=68.69  Aligned_cols=49  Identities=27%  Similarity=0.678  Sum_probs=37.4

Q ss_pred             CCccccccccccCCc------eEE--eCCCCchhhHHhHHHHhccC-----------Cccccccccccc
Q 010517          452 GSSSSCVICWEAPVE------GAC--VPCGHMAGCMSCLSEIKAKK-----------GDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~------~~~--~pCgH~~~C~~C~~~~~~~~-----------~~CP~Cr~~i~~  501 (508)
                      +...+|.||++...+      .++  .+|+|.| ...|+..|.+..           +.||+||++|..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            345799999987544      223  2799999 999999987541           469999999974

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=94.10  E-value=0.028  Score=40.91  Aligned_cols=33  Identities=30%  Similarity=0.623  Sum_probs=28.0

Q ss_pred             CccccccccccCCceEEeCCC----CchhhHHhHHHHh
Q 010517          453 SSSSCVICWEAPVEGACVPCG----HMAGCMSCLSEIK  486 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~~  486 (508)
                      ....|.+|.++..+.-|+.|-    |.| |+.|.....
T Consensus        14 a~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sI   50 (93)
T 2cs3_A           14 GPLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESI   50 (93)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHH
T ss_pred             CeeEeecchhhhccCceeeCCCccCCee-eccccHHHH
Confidence            336999999999999999884    999 999987743

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=89.90  E-value=0.22  Score=45.74  Aligned_cols=47  Identities=21%  Similarity=0.594  Sum_probs=36.5

Q ss_pred             ccccccccccCCc-eEEeCCCCchhhHHhHHHHhccC--Cccccccccccc
Q 010517          454 SSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ  501 (508)
Q Consensus       454 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~~  501 (508)
                      ...|.||.+.... ..+-.|+|.| ...|+..+.+.+  ..||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            3689999998543 3344599999 999999987653  489999987653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=89.50  E-value=0.12  Score=40.53  Aligned_cols=31  Identities=23%  Similarity=0.510  Sum_probs=24.6

Q ss_pred             cccccccccc-CCceEE--eCCCCchhhHHhHHHH
Q 010517          454 SSSCVICWEA-PVEGAC--VPCGHMAGCMSCLSEI  485 (508)
Q Consensus       454 ~~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~~  485 (508)
                      +..|.||.+. +..++.  +.|+|.| |..|...+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHH-hHHHCHHH
Confidence            3689999974 444444  8999999 99999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	508
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.004
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	9e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-06
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	9e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	9e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-05
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	5e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	9e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 5e-16
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 52  TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
           TPL VA    G + + K L++ GA+ N      +  TPLH AA+ G     + LL   A 
Sbjct: 2   TPLHVASF-MGHLPIVKNLLQRGASPNV--SNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 112 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP 155
              +  D  T L  A   GH N+V+ +  +           + P
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 7e-15
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G +  ++ L  +GAS    + + +TPL +A   +G   VAK L++  A +NA 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR-AGHTEVAKYLLQNKAKVNA- 61

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
                  TPLH AA+ G    V+LLL   AN  +     HT L +A  +GH+  V A+  
Sbjct: 62  -KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 141 HICY 144
               
Sbjct: 121 KEAS 124

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 1e-14
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G V     L   G  ++   + G TPL VA     +  V   L       +  
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVN 324

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
                G +PLH AA++G    V LLL  GA+    + D  T L +A+  G+I+V   ++
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 7e-10
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97
            + AS   M K+G TPL VA    G + VA+ L+E  A+ NA   G  G TPLH A    
Sbjct: 120 EKEASQACMTKKGFTPLHVAAK-YGKVRVAELLLERDAHPNA--AGKNGLTPLHVAVHHN 176

Query: 98  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
               V+LLL  G +      + +T L +A  +  + V R++  +       
Sbjct: 177 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 9e-10
 Identities = 36/148 (24%), Positives = 51/148 (34%), Gaps = 32/148 (21%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84
             AG  +  + L    A +    K+ +TPL  A    G  N+ K L+E  AN N     G
Sbjct: 41  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR-IGHTNMVKLLLENNANPNLATTAG 99

Query: 85  R-------------------------------GGTPLHHAAKRGLEPTVRLLLSCGANAL 113
                                           G TPLH AAK G      LLL   A+  
Sbjct: 100 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 159

Query: 114 VRNDDCHTALGVARIKGHINVVRAIESH 141
               +  T L VA    ++++V+ +   
Sbjct: 160 AAGKNGLTPLHVAVHHNNLDIVKLLLPR 187

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-09
 Identities = 43/191 (22%), Positives = 62/191 (32%), Gaps = 32/191 (16%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G V     L  + A      K G TPL VA      +++ K L+  G + ++ 
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH-HNNLDIVKLLLPRGGSPHSP 194

Query: 81  RPGGR-------------------------------GGTPLHHAAKRGLEPTVRLLLSCG 109
              G                                G TPLH AA+ G    V LLLS  
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 254

Query: 110 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK 169
           AN  + N    T L +   +GH+ V   +  H        R  Y P  + +    +   K
Sbjct: 255 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 314

Query: 170 IWVVVIPCGTA 180
             +       A
Sbjct: 315 FLLQHQADVNA 325

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + +  L S+ A+    +K G TPL +     G + VA  LI+ G  ++A 
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDAT 293

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
              G   TPLH A+  G    V+ LL   A+   +    ++ L  A  +GH ++V  +  
Sbjct: 294 TRMGY--TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

Query: 141 H 141
           +
Sbjct: 352 N 352

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.5 bits (174), Expect = 4e-14
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 4/110 (3%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89
           +D +  L +    ++ +  E      +A   +G ++V   L EL                
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENYQAFRLAAE-NGHLHVLNRLCELAPTEIMAMIQAENYHA 164

Query: 90  LHHAAKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVR 136
              AA+ G    +  L          +++ ++ +     A  +GH NV+ 
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.8 bits (154), Expect = 1e-11
 Identities = 16/147 (10%), Positives = 40/147 (27%), Gaps = 6/147 (4%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM--DSGL 63
            +++         E + Q +        R  +   +       + +    VA +   S  
Sbjct: 46  EAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA 105

Query: 64  INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH--T 121
           ++    L+     +   +           AA+ G    +  L       ++         
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENY--QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH 163

Query: 122 ALGVARIKGHINVVRAIESHICYFCGW 148
           A  +A   GH++V+  +          
Sbjct: 164 AFRLAAENGHLHVLNRLCELAPTEATA 190

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPGGRG 86
           + +   SL  +  +    + +      +  V + L    A+ N          ++ G + 
Sbjct: 32  ISANELSLMTLSYKEAIHIFLPG-TKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKS 90

Query: 87  GTPLHHAAKRGLEP---TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
                 AA  G      T+ LLL+      V   + + A  +A   GH++V+  +   
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.8 bits (123), Expect = 7e-08
 Identities = 19/143 (13%), Positives = 35/143 (24%), Gaps = 26/143 (18%)

Query: 28  GDVDAIRALRSQGASLEWMDKE--GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85
           G +  +  L     +      +        +A  +  L  +   L EL            
Sbjct: 137 GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL-NRLCELAPTEATAMIQAE 195

Query: 86  GG-TPLHHAAKRGLEPTVRLLLSCGAN----------------------ALVRNDDCHTA 122
                   A  RG    +  LL C                          + R  + H A
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA 255

Query: 123 LGVARIKGHINVVRAIESHICYF 145
             ++   G  ++V   E    ++
Sbjct: 256 FKLSNPDGVFDLVTKSECLQGFY 278

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 17/127 (13%), Positives = 30/127 (23%), Gaps = 18/127 (14%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPL------IVACMDSGLINVAKTLIELGANI---- 77
           G  + I  L      L + +              +A   + L  +         +     
Sbjct: 208 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 267

Query: 78  ---NAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND-----DCHTALGVARIK 129
              +    G      L       L   +R LLS      +        D +  L +A   
Sbjct: 268 VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

Query: 130 GHINVVR 136
           G+     
Sbjct: 328 GNQGACA 334

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 13/100 (13%)

Query: 22  YQWVIAGDVDAIRALR--SQGASLEWMDKE-------GKTPLIVACMDSGLINVAKTLIE 72
               +    +   A +  +     + + K            LI    D  L++  + L+ 
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN-DEVLLDDIRFLLS 300

Query: 73  LGA---NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109
           +             G     L  A + G +    LLLS  
Sbjct: 301 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 3e-12
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 21  LYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIV---ACMDSGLINVAKTLIELGAN 76
           L      G V+ ++ L  + GA +   D  G+  LI    +  DS +  +   L++ GA+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVV 135
           +N    G RG TPL  A ++     V+ LL          + D  TAL +A       + 
Sbjct: 212 VNV--RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 136 RAIESH 141
             +   
Sbjct: 270 ELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 2e-11
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 34  RALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93
             L   GA +    + GKTPLI+A     L  V + L +    IN       G T L  A
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND--TDSDGKTALLLA 260

Query: 94  AKRGLEPTVRLLLSCGAN 111
            +  L+    LL   GA+
Sbjct: 261 VELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 3e-09
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 44  EWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRGGTPLHHAA--KRGLEP 100
           E + K G T L+ A    G + V K L+ E+GA++NA    GR        +     +E 
Sbjct: 142 ERLRKGGATALMDAAE-KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 101 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
              LLL  GA+  VR +   T L +A  K H+ +V+ +   
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 37/257 (14%), Positives = 72/257 (28%), Gaps = 17/257 (6%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC-HTALGVARIKGHINVVRAIESHICY 144
               L  A +      V+ LL  GAN   + ++   T L  A      ++V   E  + +
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV---ELLLRH 61

Query: 145 FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV 204
               +      +    LA    S K+  + +  G                +    + +A+
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 205 IALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWL-----------DN 253
             L+K   +     +         +        A+   G    L+ L           DN
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVNACDN 180

Query: 254 ACRGTSQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDY 313
             R        +++    EAI      + A+       G      A     +   ++   
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240

Query: 314 KGWGDEQAKEDYNGWGA 330
           +   +     D +G  A
Sbjct: 241 QEHIEINDT-DSDGKTA 256

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           L   V    +  ++ L  Q    +   D +GKT L++A     L  +A+ L + GA+ + 
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 9e-05
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 18  DELLYQWVIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGAN 76
           + LL + V   DVD ++ L   GA++ + ++E G TPL  A       ++ +  + L   
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ-MSREDIVE--LLLRHG 62

Query: 77  INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 136
            +       G TP   AA  G    ++L LS GA+    +    TA   A + G +  ++
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 137 AIESHICYFCGW 148
            +          
Sbjct: 123 FLYKRGANVNLR 134

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 1/143 (0%)

Query: 7   SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINV 66
            +N ++Q+   +  L + +     +   +L +  ++                 DS L  V
Sbjct: 29  VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 88

Query: 67  AKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
                    N+N       G TPLH          V+ L+  G+N L  ++   + L  A
Sbjct: 89  NDAFPNTQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

Query: 127 RIKGHINVVRAIESHICYFCGWL 149
               +       E+ + Y    L
Sbjct: 148 VKSVNNYDSGTFEALLDYLYPCL 170

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 4e-09
 Identities = 15/98 (15%), Positives = 31/98 (31%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88
           D+     ++ Q   ++    E ++       +     +    ++             G T
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 89  PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 126
            L+ AA+ G    V  LL  GA+  + N      +   
Sbjct: 262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.1 bits (149), Expect = 3e-11
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 44  EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVR 103
           +    +G+T L  A   S +  V   + E G+N    +    G TP+  AA+ G    V 
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK--DKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 104 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
            L+  GA+    +   HTA  +A+   H N+V   +
Sbjct: 239 YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 39  QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL 98
           +G++ +  D++GKTP+++A    G I V   LI+ GA++ A        T    A     
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQ-EGRIEVVMYLIQQGASVEA--VDATDHTARQLAQANNH 266

Query: 99  EPTVRLLLSC 108
              V +   C
Sbjct: 267 HNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 51  KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL---- 106
           ++P+ +    +G   + + +     NI   R      T LH  A          L+    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPR---HNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 107 ----SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
               + GA+    + D +T L +A +     +V  +         +
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 103

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           +      G ++ +  L  QGAS+E +D    T   +A   +   N+      
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA-NNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 10/152 (6%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-------DSGLINVAKTLIELGANINA 79
           AG       +  +  ++    +  +T L            +  +++ AK  I  GA++N 
Sbjct: 11  AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN- 68

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
                   TPL  A        V  L+  GA+  + N    +AL  A       ++  + 
Sbjct: 69  -AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 127

Query: 140 SHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171
           +                    +      R   
Sbjct: 128 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 159

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.7 bits (148), Expect = 3e-11
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 32  AIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH 91
           A + L S   +     K G T L V     G   V K LI+   ++N     G   TPLH
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHV-AAAKGYTEVLKLLIQARYDVNIKDYDGW--TPLH 237

Query: 92  HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR--IKGHINVVRA 137
            AA  G E   R+L+    +    N    TA  VA   I G++  ++ 
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 18/70 (25%), Positives = 27/70 (38%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            G     A   G    V  LL  GA+    N D  TAL  A I  ++++V+ +  +    
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 146 CGWLREFYGP 155
                E + P
Sbjct: 100 NQPDNEGWIP 109

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + ++ L      +   D +G TPL  A    G     + L+E   ++ A 
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH-WGKEEACRILVENLCDMEA- 260

Query: 81  RPGGRGGTPLHHAAK 95
                G T    A +
Sbjct: 261 -VNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140
           R    GGT LH AA +G    ++LL+    +  +++ D  T L  A   G     R +  
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 141 H 141
           +
Sbjct: 254 N 254

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 6e-11
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
           +  + +  +    L+    AG  + ++AL  +GA +  +++ G TPL           +A
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY-AASKNRHEIA 119

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             L+E GAN +A        T +H AA +G    + +LL   A+  +++ + +T L +A 
Sbjct: 120 VMLLEGGANPDA--KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 177

Query: 128 IKGHINVVRAIESH 141
            +  +   + + S 
Sbjct: 178 DEERVEEAKLLVSQ 191

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 1e-10
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+        +    L   GA+ +  D    T +       G + +   L+   A+ N  
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHR-AAAKGNLKMIHILLYYKASTNI- 164

Query: 81  RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 138
                G TPLH A         +LL+S GA+  + N +  T L VA+  G   +++ +
Sbjct: 165 -QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 1e-09
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 37/172 (21%)

Query: 20  LLYQWVIAGDVDAIR-ALRSQGASLEWMDKEGKTPLIVAC-------------------- 58
           ++     +G ++ ++ ++ +  +     D++ +T L  AC                    
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 59  ------------MDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLL 106
                         +G   + K L+  GA +NA      G TPLH+AA +       +LL
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA--VNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 107 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFL 158
             GAN   ++    TA+  A  KG++ ++  +          +++  G + L
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHIL--LYYKASTNIQDTEGNTPL 173

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 9e-10
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 451 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506
             +   C IC E   +    PCGH+       S  +++   CP CR +I     + 
Sbjct: 20  GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 1e-09
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 2/112 (1%)

Query: 43  LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHAAKRGLEPT 101
             ++ ++G T L +A +          L+   A           G T LH AA  G   T
Sbjct: 2   FGYVTEDGDTALHLAVI-HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 102 VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFY 153
           V  L + GA  LV     HTAL +A           +            + Y
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 58  CMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA 110
            +++   +V + L++ GA+  A   GGR  TPL  A  R      RLL + GA
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGR--TPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 8e-07
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 2/122 (1%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
                    + +           LE  + +G TPL VA +      V             
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 80  YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 139
               GR  TPLH A +      + LLL  GA+   R     T LG A ++ +  + R + 
Sbjct: 188 EPTCGR--TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

Query: 140 SH 141
           +H
Sbjct: 246 AH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           + +   +     +       L+  V A     +  L   GA        G+TPL  A + 
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL- 234

Query: 61  SGLINVAKTLIELGA 75
                +A+ L   GA
Sbjct: 235 RPNPILARLLRAHGA 249

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 49.9 bits (119), Expect = 9e-09
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 454 SSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 504
           +  C IC E P   +  +PC H   C  C++    +   CP+C+  +  V+ 
Sbjct: 5   AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH 55

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
           ++   +       L+  V     + ++ L  +GA ++ +D +     ++  +++  +++ 
Sbjct: 101 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 160

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
           + L++ GAN+NA    G   + LH A+ RGL P VR L+  GA++ ++N    T L VAR
Sbjct: 161 QLLLQHGANVNAQMYSGS--SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 218

Query: 128 IKGHINVVR 136
            +  I+++R
Sbjct: 219 SRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 49  EGKTPLIVACMDSGLINVAKTLIEL----GANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
           +G TPL +A +  G +     L+ L    G  ++ Y       TPLH A    L   VRL
Sbjct: 2   DGDTPLHIAVV-QGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRL 58

Query: 105 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
           L++ GA+ +  +    TA  +A        +RA+          
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 102

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 3/132 (2%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
            N + +       L           +  L +  A +   D  GKT L  A   +    V 
Sbjct: 81  TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVN 140

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             L+    + N      +  TPL  AA+ G     + LL   AN  + +        VA 
Sbjct: 141 ILLMH---HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVAS 197

Query: 128 IKGHINVVRAIE 139
            + H ++VR ++
Sbjct: 198 ERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 66  VAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125
           V   L+  GA +NA      G T LH AA+       + LL  GA+A  +++   T L  
Sbjct: 4   VISDLLAQGAELNA-TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 126 ARIKGHINVVRAIESHICYFCGW 148
           A     + V + +  +       
Sbjct: 63  AVAADAMGVFQILLRNRATNLNA 85

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 457 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 499
           C  C         +PC H   C  CL     +   CP+C+   
Sbjct: 9   CQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQ---CPICQAPW 47

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 10/134 (7%)

Query: 16  SKDELLYQWVIAGDVDAIRALRSQGASL------EWMDKEGKTPLIVACM--DSGLINVA 67
           +K   L + V   D+  +    + G  L          +  +T L +A    D   +++ 
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 127
             L++   N++     G                 ++LLL   A+  + N+   T L +A+
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCC--LTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 128 IKGHINVVRAIESH 141
              H +    +   
Sbjct: 123 RLKHEHCEELLTQA 136

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (106), Expect = 9e-07
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 448 VKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKIN 500
                 S SC IC     +     C H+  C  C+   +K     CP CR    
Sbjct: 17  PAHFVKSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCF 69

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 88  TPLHHAAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146
            PLH A        V+ LL S  +  L ++ D    L  +       +   + S +    
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 147 GW 148
             
Sbjct: 62  LD 63

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 45  WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
           W DK+G TPL  A  +         + + GA  +      +G      A    +    + 
Sbjct: 167 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--VDNKGAKAEDVALNEQV---KKF 221

Query: 105 LLSCGANA 112
            L+   +A
Sbjct: 222 FLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 52  TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGAN 111
            PL  ACM++    V + L    + +      GR   PLH +           LLS   N
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWSVSFQAHEITSFLLSKMEN 59

Query: 112 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 148
             + +    +      I   +  +  ++S        
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP 96

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 6/135 (4%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
            + ++        L+  V     +  + L   GAS+   DK  + PL  A     L  + 
Sbjct: 96  PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 155

Query: 68  KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALGVA 126
                  + +       +G TPL HA   G      LL+   GA   + ++    A  VA
Sbjct: 156 LLCGLGKSAV--NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 213

Query: 127 RIKGHINVVRAIESH 141
               +  V +   ++
Sbjct: 214 L---NEQVKKFFLNN 225

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 13/125 (10%), Positives = 26/125 (20%), Gaps = 33/125 (26%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLE--------------------------------WMD 47
           LL    + G+ D ++ +  +                                        
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 48  KEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHAAKRGLEPTVRLLL 106
                  +        + V K L+E GA + A      +         + G     + L 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 107 SCGAN 111
                
Sbjct: 124 GVQEK 128

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 456 SCVICWEAPVEGACVPCGHM--AGCMSCLSEIKAKKGDCPVCRTKINQ 501
            C IC E   E     C H+    CM  L   K     CP+C+  I +
Sbjct: 23  ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 5e-05
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 4/50 (8%)

Query: 456 SCVICWEAPVEGACV----PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501
            C +C E             CG+             + G CP CR    +
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 37.9 bits (88), Expect = 9e-05
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 450 DDGSSSSCVICWEAPVEGA----CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 499
           DDG    C +C     +G        CGH      C+         CP+CR  +
Sbjct: 3   DDGVE--CAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV 53

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G T LH A        V LLL CGA+        ++   +   +    + + +   
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 3/75 (4%)

Query: 45  WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRL 104
                G+T L +A        V+  L   GA++N     G   +P      R      + 
Sbjct: 140 QEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGY--SPYQLTWGRPSTRIQQQ 196

Query: 105 LLSCGANALVRNDDC 119
           L       L    + 
Sbjct: 197 LGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 86  GGTPLHHAAKRG----LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141
           G + LH A            +R +    A    +N+   T L +A I     +  A+   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 142 ICYFCGW 148
            C     
Sbjct: 62  GCDPELR 68

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 457 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLYT 507
           C I  + P      P        S L +     G+ P+    +   +++ +  
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 55

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 15/62 (24%), Positives = 20/62 (32%)

Query: 87  GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146
           G  L  AA RG    +  LL    N   +N    TAL V ++       R +        
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 147 GW 148
             
Sbjct: 62  KD 63

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 11/63 (17%), Positives = 20/63 (31%)

Query: 86  GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF 145
            G  L  AA+ G +  VR+L++ GA               A+          + + +   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 146 CGW 148
              
Sbjct: 62  ART 64

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 455 SSCVICWEAPVEGACV-----PCGHMAGCMSCLSEI-KAKKGDCPVCRTKINQ 501
             C  C         +      CGH   C SC+  +     G+CP C T + +
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 1/65 (1%)

Query: 85  RGGTPLHHAAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143
           R G  L  AA RG    VR LL     +    N    TAL V         +  ++    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 144 YFCGW 148
                
Sbjct: 61  PNVQD 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	508
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.98
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.09
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.96
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.94
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.93
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.88
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.87
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.81
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.71
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.69
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.67
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.54
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.48
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.45
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.37
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.24
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.24
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	90.33
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	83.16

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=7.6e-32  Score=255.51  Aligned_cols=194  Identities=21%  Similarity=0.163  Sum_probs=175.2

Q ss_pred             cccCCchHHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT   88 (508)
Q Consensus        12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t   88 (508)
                      ..+++|+||||+|++.|+.++|++||++|++   ++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|.|
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~i~~~--d~~g~t   80 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGHT   80 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSCC
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhh-ccccccccccccccccccc--ccccch
Confidence            4589999999999999999999999999988   667889999999999998 9999999999999999998  889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-----------------------------------------------ccccCCCCCc
Q 010517           89 PLHHAAKRGLEPTVRLLLSCGAN-----------------------------------------------ALVRNDDCHT  121 (508)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~d~~g~T  121 (508)
                      |||+|+..++.+++++|++.+..                                               ++.+|..|.|
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            99999999999999999764321                                               2457889999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccCh
Q 010517          122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP  201 (508)
Q Consensus       122 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~  201 (508)
                      |||+|+..++.+++++|++.+++.+ ..++..|.|||| +|+..++.+++++|+++|++++.++..++++++.|+..++.
T Consensus       161 pLh~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~TpL~-~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~  238 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP  238 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             cccccccccccccccchhccccccc-cccccccccccc-ccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            9999999999999999999999987 256788999999 99999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHh
Q 010517          202 RAVIALWKA  210 (508)
Q Consensus       202 ~~v~~l~~~  210 (508)
                      +.+..|+..
T Consensus       239 ~i~~~Ll~~  247 (255)
T d1oy3d_         239 ILARLLRAH  247 (255)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            766555543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.9e-31  Score=245.38  Aligned_cols=183  Identities=22%  Similarity=0.208  Sum_probs=176.1

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG   87 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~   87 (508)
                      ..++.+|..|+||||+|+..|+.+++++|++.+.+....+..+.+++++++.. ++.+++++|+++|++++.+  |..|+
T Consensus        28 ~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~Ll~~~~d~~~~--d~~g~  104 (223)
T d1uoha_          28 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GRDEIVKALLGKGAQVNAV--NQNGC  104 (223)
T ss_dssp             GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCC
T ss_pred             CcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc-cccchhHHHhccCceeEee--CCCCC
Confidence            35678899999999999999999999999999999999999999999999998 9999999999999999998  88999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517           88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  167 (508)
Q Consensus        88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~  167 (508)
                      ||||+|+.+|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+.+++  .+|.+|+|||| .|+..|+
T Consensus       105 tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~--~~d~~g~TpL~-~Aa~~g~  181 (223)
T d1uoha_         105 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN--IQDTEGNTPLH-LACDEER  181 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HHHHTTC
T ss_pred             chhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee--eccCCCCceec-cccccCc
Confidence            99999999999999999999999999999999999999999999999999999999999  89999999999 9999999


Q ss_pred             HHHHHHhhhCCCCCCCCCccccccccccc
Q 010517          168 RKIWVVVIPCGTANPSKPLRFELVIYPSL  196 (508)
Q Consensus       168 ~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~  196 (508)
                      .+++++|+++|++++.++..++++++.|.
T Consensus       182 ~~~v~~LL~~Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         182 VEEAKLLVSQGASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHCC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-30  Score=240.77  Aligned_cols=218  Identities=17%  Similarity=0.192  Sum_probs=196.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517           17 KDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK   95 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~   95 (508)
                      +.+.|+.+|..|+++.|+.+|+ .+.+++.+|.+|+||||+||.. |+.+++++|+..+.+....  +..+.+++++++.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~-g~~e~~~~l~~~~~~~~~~--~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDK--DDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCSCCC--CTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHh-hhhcccccccccccccccc--ccccccccccccc
Confidence            4678999999999999987765 5678999999999999999998 9999999999999998887  7788999999999


Q ss_pred             cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517           96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (508)
Q Consensus        96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll  175 (508)
                      .++.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  .++.+|.|||| +|+..++.+++++|+
T Consensus        80 ~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~--~~~~~~~t~L~-~a~~~~~~~~~~~L~  156 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYEATAMH-RAAAKGNLKMIHILL  156 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred             ccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCccch-hhhhcCCcchhhhhc
Confidence            999999999999999999999999999999999999999999999999999  89999999999 999999999999999


Q ss_pred             hCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHH
Q 010517          176 PCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLD  252 (508)
Q Consensus       176 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~  252 (508)
                      ..+.+++..+..+.++++.++..+....+..|+.        .|+|  ++.+|..|+||||+|.  .+....++.|.
T Consensus       157 ~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~--------~Gad--~~~~d~~g~tpl~~A~--~~~~~i~~~Ll  221 (223)
T d1uoha_         157 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS--------QGAS--IYIENKEEKTPLQVAK--GGLGLILKRMV  221 (223)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH--------TTCC--SCCCCTTSCCHHHHCC--TTHHHHHHHHH
T ss_pred             cccceeeeccCCCCceeccccccCcHHHHHHHHH--------CCCC--CCCCCCCCCCHHHHHH--CCCHHHHhccc
Confidence            9999999999999999999999988766655443        3788  7889999999999984  35555565554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2e-29  Score=238.62  Aligned_cols=167  Identities=21%  Similarity=0.138  Sum_probs=151.8

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcc----------
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA----------   79 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~----------   79 (508)
                      ++.+|..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+.. ++.+++++|++.+.....          
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  116 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQS  116 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC--------
T ss_pred             ccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhcc-CchHHHHHHHhhccchhcccchhhhhHH
Confidence            567889999999999999999999999999999999999999999999997 999999999865432111          


Q ss_pred             -----------------------------------cCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc-CCCCCcHH
Q 010517           80 -----------------------------------YRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR-NDDCHTAL  123 (508)
Q Consensus        80 -----------------------------------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~TpL  123 (508)
                                                         ..+|..|.||||+|+..++.+++++|++++++.+.. +..|.|||
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL  196 (255)
T d1oy3d_         117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL  196 (255)
T ss_dssp             ---------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH
T ss_pred             hhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccc
Confidence                                               012677999999999999999999999999988754 67899999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC
Q 010517          124 GVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  180 (508)
Q Consensus       124 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~  180 (508)
                      |+|++.|+.+++++|+++|++++  .+|.+|.|||| +|+..++.+++++|+++|++
T Consensus       197 ~~A~~~~~~~~v~~Ll~~gadin--~~d~~g~t~L~-~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         197 HLAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCC
T ss_pred             cccccccHHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999  89999999999 99999999999999999996

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.7e-29  Score=218.05  Aligned_cols=153  Identities=23%  Similarity=0.288  Sum_probs=147.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCC
Q 010517           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL   98 (508)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~   98 (508)
                      ++||+||..|+.++|++|+++|+|+|.+|.+|.||||+|+ . |+.+++++|+++|++++.+  +..|.++|+.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~-~~~ei~~~Ll~~~a~~~~~--~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-L-GNPEIARRLLLRGANPDLK--DRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-S-SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-c-ccccccccccccccccccc--cccCcccccccccccc
Confidence            8999999999999999999999999999999999999886 5 8999999999999999998  8899999999999999


Q ss_pred             HHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC-cccccccccCCCCHHHHHHhhcCCHHHHHHhhhC
Q 010517           99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC-YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (508)
Q Consensus        99 ~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~  177 (508)
                      .+.++.|++.+.+++..|..|.+|||+|+..++.+++++|+++++ +++  .+|.+|+|||| +|+..++.+++++|+++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~d~~g~TpL~-~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999987 667  89999999999 99999999999999998


Q ss_pred             C
Q 010517          178 G  178 (508)
Q Consensus       178 g  178 (508)
                      |
T Consensus       156 G  156 (156)
T d1ihba_         156 G  156 (156)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=7.2e-29  Score=239.54  Aligned_cols=213  Identities=20%  Similarity=0.222  Sum_probs=189.1

Q ss_pred             cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA   93 (508)
Q Consensus        14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A   93 (508)
                      +.+|.|+||+||..|++++|++||++|+|+|.+|.+|.||||+|+.. |+.++|++|+++|++.+..  +..+.+|||++
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~-g~~eiv~~Ll~~~~~~~~~--~~~~~~~L~~a  113 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHAA  113 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhc-CCceeeeeecccccccccc--ccccccccccc
Confidence            45678999999999999999999999999999999999999999997 9999999999999999887  78999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC-Ccc------------------------ccc
Q 010517           94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYF------------------------CGW  148 (508)
Q Consensus        94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~------------------------~~~  148 (508)
                      +..++.++++.|+++|+..+..|..+.+++++|+..++.++++.|+... .++                        +..
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccc
Confidence            9999999999999999999999999999999999999999888887542 111                        112


Q ss_pred             ccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceecc
Q 010517          149 LREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYD  228 (508)
Q Consensus       149 ~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d  228 (508)
                      ..+..|.|||| .|+..++.+++++|+++|++++.++..+.++++.|+..++.+.+..|+.        +|+|  ++.+|
T Consensus       194 ~~~~~g~t~L~-~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~--------~Gad--v~~~d  262 (291)
T d1s70b_         194 RHAKSGGTALH-VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE--------NLCD--MEAVN  262 (291)
T ss_dssp             CCTTTCCCHHH-HHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH--------TTCC--TTCCC
T ss_pred             cccCCCCChhh-HHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHH--------CCCC--CCCcC
Confidence            46778999999 9999999999999999999999888889999999999998766554433        3788  78899


Q ss_pred             CCCcchhHhhhh
Q 010517          229 QATKIRYKFASA  240 (508)
Q Consensus       229 ~~~~t~l~~a~~  240 (508)
                      ..|+||||+|++
T Consensus       263 ~~G~TaL~~A~e  274 (291)
T d1s70b_         263 KVGQTAFDVADE  274 (291)
T ss_dssp             TTSCCTTTSCCS
T ss_pred             CCCCCHHHHHHH
Confidence            999999999974

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.5e-29  Score=229.61  Aligned_cols=189  Identities=22%  Similarity=0.261  Sum_probs=163.9

Q ss_pred             CchHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517           16 SKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH   91 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh   91 (508)
                      +|+||||+|+..|+.    +++++++..|+++|.+|.+|+||||+|+.. |+.+++++|+++|++++.+  |..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~-~~~~iv~~L~~~g~d~~~~--d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccc-ccccccccccccccccccc--ccccccccc
Confidence            589999999999986    455666778999999999999999999997 9999999999999999998  889999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCc------cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517           92 HAAKRGLEPTVRLLLSCGANA------LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  165 (508)
Q Consensus        92 ~A~~~g~~~~v~~Ll~~ga~~------~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~  165 (508)
                      +++..++.++++.|++.+...      ......|.||||+|+..++.+++++|+..|+.++. ..+.+|.|||| +|+..
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~-~~~~~G~T~L~-~A~~~  155 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCNGRTALH-LAVDL  155 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHH-HHHHT
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccc-ccccCCCCccc-ccccc
Confidence            999999999999999987553      33456789999999999999999999999999872 44567999999 99999


Q ss_pred             CCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHH
Q 010517          166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWK  209 (508)
Q Consensus       166 ~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~  209 (508)
                      |+.+++++|+++|+|++.++..+.++++.+...+..+.+..+.+
T Consensus       156 g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         156 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             ccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999998888666655443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.8e-28  Score=225.23  Aligned_cols=210  Identities=17%  Similarity=0.111  Sum_probs=187.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccC-CCCCCCcHHHHHHH
Q 010517           18 DELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-PGGRGGTPLHHAAK   95 (508)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~-~d~~g~tpLh~A~~   95 (508)
                      ++|||+||..|+.++|+.||+. +.+++.+|.+|+||||+|+.. |+.+++++|+++|++++..+ .+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHc-CCccccchhhhhhcccccccccccccccccccccc
Confidence            4799999999999999999884 578999999999999999998 99999999999999987642 26789999999999


Q ss_pred             cCCHHHHHHHHHCCCC--ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517           96 RGLEPTVRLLLSCGAN--ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  173 (508)
Q Consensus        96 ~g~~~~v~~Ll~~ga~--~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~  173 (508)
                      .+..++++.++..+..  ....+..+.|+|+.++..++.+++++|++.+.+.+  .++.+|+|||| +|+..++.+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~  156 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIEL  156 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHHTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccc--ccCCCCCCccc-hhhhccccccccc
Confidence            9999999999998865  44567889999999999999999999999999988  89999999999 9999999999999


Q ss_pred             hhhCC-CCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhh
Q 010517          174 VIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  240 (508)
Q Consensus       174 Ll~~g-~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~  240 (508)
                      |++.+ .+++.++..+.++++.++..+..+.+..|+...       ++|  ++++|+.|+|||++|..
T Consensus       157 Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~-------gad--~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         157 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY-------GAE--YDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-------CCC--SCCCCTTSCCTGGGCSC
T ss_pred             ccccccccccccccccCCchhhhcccccHHHHHHHHHhc-------CCC--CCCcCCCCCCHHHHHhh
Confidence            99987 577888889999999999999887777665433       678  78899999999999874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.9e-28  Score=212.46  Aligned_cols=151  Identities=26%  Similarity=0.308  Sum_probs=143.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC
Q 010517           19 ELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (508)
Q Consensus        19 t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g   97 (508)
                      +.||.||..|+.++|+.||++ ++++|.+|..|+||||+|+ . |+.+++++|++++.+++..  +..|.+||++++..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~-~~~~~v~~Ll~~~~~~~~~--~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-F-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-T-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-c-ccccccccccccccccccc--ccccccccccccccc
Confidence            459999999999999999985 7899999999999999987 4 7899999999999999998  789999999999999


Q ss_pred             CHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhC
Q 010517           98 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (508)
Q Consensus        98 ~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~  177 (508)
                      +.+++++++++|++++.+|..|.||||+|+..|+.+++++|+ .|++++  .+|.+|+|||| +|+..|+.+++++|++|
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH--RRDARGLTPLE-LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT--CCCTTSCCHHH-HHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccccCCCCeeecccccccccccccccc-cccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhh
Confidence            999999999999999999999999999999999999999887 689998  89999999999 99999999999999976

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=1.2e-28  Score=235.72  Aligned_cols=196  Identities=16%  Similarity=0.105  Sum_probs=169.5

Q ss_pred             ccccCccccc-CCchHHHHHHHHcCCHHHHHHH--------HHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC
Q 010517            5 LNSMNQHQQR-QSKDELLYQWVIAGDVDAIRAL--------RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA   75 (508)
Q Consensus         5 ~~~~~~~~~~-~~g~t~L~~Aa~~g~~~~v~~L--------l~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga   75 (508)
                      +.+.++|..+ ++|+||||+||..|+.++|+.|        ++.|+|+|.+|.+|+||||+|+.. |+.++|++|+++|+
T Consensus        20 l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~Ga   98 (277)
T d2fo1e1          20 ITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGA   98 (277)
T ss_dssp             CSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTC
T ss_pred             HHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccc-cccccccccccccc
Confidence            3344555556 4699999999999999988776        567999999999999999999998 99999999999999


Q ss_pred             CCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC---------------------------------------------
Q 010517           76 NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA---------------------------------------------  110 (508)
Q Consensus        76 ~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga---------------------------------------------  110 (508)
                      +++.+  |..|.||||+|+..++.+++++++..+.                                             
T Consensus        99 d~n~~--~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (277)
T d2fo1e1          99 DPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG  176 (277)
T ss_dssp             CSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCS
T ss_pred             ccccc--cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccc
Confidence            99998  8899999999999999998888864320                                             


Q ss_pred             --CccccCCCCCcHHHHHHHhCCHHHHHHH-HHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCcc
Q 010517          111 --NALVRNDDCHTALGVARIKGHINVVRAI-ESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLR  187 (508)
Q Consensus       111 --~~~~~d~~g~TpLh~A~~~g~~~~v~~L-l~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~  187 (508)
                        ..+..+..|.||||+++..++.++++++ ...+.+.+  .+|..|+|||| +|+..|+.+++++|+++|++++.++..
T Consensus       177 ~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~iv~~Ll~~gadin~~d~~  253 (277)
T d2fo1e1         177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTPIM-LAAQEGRIEVVMYLIQQGASVEAVDAT  253 (277)
T ss_dssp             GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCSSCCCSS
T ss_pred             cccccccccCCCCcccccccccccccccccccccccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCcCCCCCcCCC
Confidence              0134566899999999999999999875 46677777  89999999999 999999999999999999999999999


Q ss_pred             ccccccccccccChHHHHH
Q 010517          188 FELVIYPSLQDVQPRAVIA  206 (508)
Q Consensus       188 ~~~~l~~a~~~~~~~~v~~  206 (508)
                      +.++++.|++.++.+.+..
T Consensus       254 G~T~L~~A~~~~~~~iv~l  272 (277)
T d2fo1e1         254 DHTARQLAQANNHHNIVDI  272 (277)
T ss_dssp             SCCHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHH
Confidence            9999999999988655543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.6e-27  Score=204.50  Aligned_cols=151  Identities=24%  Similarity=0.258  Sum_probs=143.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHc
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR   96 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~   96 (508)
                      ..||||.||+.|+.++|++||++|++++ .|..|+||||+|+.. ++.++++.++......+..  +..+.+++++++..
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   77 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccc-ccccccccccccccccccc--cccccccccccccc
Confidence            4599999999999999999999999987 699999999999998 9999999999998888776  77889999999999


Q ss_pred             CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHh
Q 010517           97 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (508)
Q Consensus        97 g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~L  174 (508)
                      .+.+++++|+.+|++++.+|.+|.||||+|+..|+.+++++|++.|++++  .+|.+|.|||| +|+..|+.+++++|
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~--~~d~~g~Tpl~-~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCc--ccCCCCCCHHH-HHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999  89999999999 99999999999976

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-26  Score=232.25  Aligned_cols=217  Identities=23%  Similarity=0.183  Sum_probs=180.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC
Q 010517           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (508)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g   97 (508)
                      .||||+||..|+.++|++||++|+++|.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~gadi~~~--~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDDQTPLHCAARIG   77 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTSCCHHHHHHHHT
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHHHcC
Confidence            3899999999999999999999999999999999999999998 9999999999999999998  889999999999999


Q ss_pred             CHHHHHHHHHCCCC---------------------------------ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517           98 LEPTVRLLLSCGAN---------------------------------ALVRNDDCHTALGVARIKGHINVVRAIESHICY  144 (508)
Q Consensus        98 ~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~  144 (508)
                      +.+++++|+..+.+                                 .+..+..+.++|+.|+..++.++++.|++++++
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~  157 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  157 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999865443                                 244577899999999999999999999999999


Q ss_pred             ccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcc
Q 010517          145 FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSL  224 (508)
Q Consensus       145 ~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i  224 (508)
                      ++  ..+.+|.+||| .|+..++.+++++|+.+|++++..+..+.++++.............++...        ..  .
T Consensus       158 ~~--~~~~~~~~~L~-~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~--------~~--~  224 (408)
T d1n11a_         158 PN--AAGKNGLTPLH-VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG--------GS--A  224 (408)
T ss_dssp             TT--CCCSSCCCHHH-HHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--------CC--T
T ss_pred             CC--cCCCcCchHHH-HHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcc--------cc--c
Confidence            98  88999999999 999999999999999999999888877888877777666655444433221        11  2


Q ss_pred             eeccCCCcchhHhhhhcCCChhHHHHH
Q 010517          225 TIYDQATKIRYKFASANEGDKHQLQWL  251 (508)
Q Consensus       225 ~~~d~~~~t~l~~a~~~~~~~~~l~~l  251 (508)
                      ...+..+.|++++|... +....++.+
T Consensus       225 ~~~~~~~~t~l~~a~~~-~~~~~~~~~  250 (408)
T d1n11a_         225 NAESVQGVTPLHLAAQE-GHAEMVALL  250 (408)
T ss_dssp             TCCCTTCCCHHHHHHHT-TCHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHh-CcHhHhhhh
Confidence            23344556666665533 233334433

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.7e-27  Score=217.71  Aligned_cols=170  Identities=23%  Similarity=0.146  Sum_probs=155.0

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCccc----CC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY----RP   82 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~----~~   82 (508)
                      ...+|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+++.. ++.++++.|+..+......    ..
T Consensus        29 ~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~  107 (221)
T d1iknd_          29 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKAT  107 (221)
T ss_dssp             CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCC
T ss_pred             CCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccccc-ccccccchhhhhccccccccccccc
Confidence            346788899999999999999999999999999999999999999999999998 9999999999987654321    12


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 010517           83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL  161 (508)
Q Consensus        83 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~  161 (508)
                      ...|.||||+|+..++.+++++|++.|+.++..+ .+|.||||+|++.|+.+++++|+++|++++  .+|.+|+|||| +
T Consensus       108 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~--~~~~~G~tpl~-~  184 (221)
T d1iknd_         108 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-L  184 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-G
T ss_pred             ccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc--ccCCCCCCHHH-H
Confidence            4568999999999999999999999999988765 579999999999999999999999999999  99999999999 9


Q ss_pred             HhhcCCHHHHHHhhhCCCC
Q 010517          162 APQLMSRKIWVVVIPCGTA  180 (508)
Q Consensus       162 A~~~~~~~i~~~Ll~~g~~  180 (508)
                      |+..++.+++++|++.+.+
T Consensus       185 A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         185 TWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CTTSSCHHHHHHHHTTSCG
T ss_pred             HHHCCCHHHHHHHHHcCCc
Confidence            9999999999999988764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.7e-26  Score=213.26  Aligned_cols=187  Identities=18%  Similarity=0.092  Sum_probs=171.9

Q ss_pred             cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCc---cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCC
Q 010517            8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEW---MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG   84 (508)
Q Consensus         8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~---~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~   84 (508)
                      ...+.+|.+|.||||+|+..|+.++|++||++|++++.   .+..|.+|+|+++.. +..++++.++..+...+....+.
T Consensus        25 ~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  103 (229)
T d1ixva_          25 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKITN  103 (229)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHSSSSCCCTTCCCT
T ss_pred             CcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            35678899999999999999999999999999999864   567899999999998 99999999999998776655578


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC-CcccccccccCCCCHHHHHHh
Q 010517           85 RGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAP  163 (508)
Q Consensus        85 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~g~tpL~~~A~  163 (508)
                      .+.|+|++++..++.+++++|++.|.+.+..|..|.||||+|+..|+.+++++|++.+ .+++  .+|.+|+|||| +|+
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in--~~d~~g~TpLh-~A~  180 (229)
T d1ixva_         104 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HAL  180 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHH
T ss_pred             ccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccccc--ccccccCCchh-hhc
Confidence            8999999999999999999999999999999999999999999999999999999997 5677  88999999999 999


Q ss_pred             hcCCHHHHHHhhh-CCCCCCCCCccccccccccccc
Q 010517          164 QLMSRKIWVVVIP-CGTANPSKPLRFELVIYPSLQD  198 (508)
Q Consensus       164 ~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~l~~a~~~  198 (508)
                      ..++.+++++|++ .|++++.++..+.++++.+.+.
T Consensus       181 ~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             HTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             ccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH
Confidence            9999999999996 5999999999999999998753

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=7.4e-27  Score=213.92  Aligned_cols=161  Identities=23%  Similarity=0.232  Sum_probs=134.0

Q ss_pred             cCccc-ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCC-----------------------
Q 010517            8 MNQHQ-QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL-----------------------   63 (508)
Q Consensus         8 ~~~~~-~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~-----------------------   63 (508)
                      .++|. .|.+|.||||+||..|+.++|++||+.|++++.++..+.++++.++.. ++                       
T Consensus        13 ~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   91 (209)
T d1ot8a_          13 AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA-DAMGVFQILLRNRATNLNARMHDGT   91 (209)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHTCTTCCTTCCCTTCC
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence            34554 588999999999999999999999999999999999999999998764 33                       


Q ss_pred             -----------HHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCH
Q 010517           64 -----------INVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI  132 (508)
Q Consensus        64 -----------~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~  132 (508)
                                 ....+.|+.++++++..  +..|+||||+++..+..++++.|++.+.+++..|..|.||||+|+..|+.
T Consensus        92 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~--~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~  169 (209)
T d1ot8a_          92 TPLILAARLAIEGMVEDLITADADINAA--DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY  169 (209)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCTTCB--CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhhhhhccccccc--CCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHH
Confidence                       34566677777777777  77788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHh
Q 010517          133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  174 (508)
Q Consensus       133 ~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~L  174 (508)
                      +++++|+++|++++  .+|.+|+|||| +|++.|+.++|++|
T Consensus       170 ~~v~~Ll~~gad~n--~~d~~g~Tpl~-~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         170 EASKALLDNFANRE--ITDHMDRLPRD-VASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHhhc
Confidence            88888888888887  77888888888 88888888888765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.7e-26  Score=207.14  Aligned_cols=180  Identities=21%  Similarity=0.210  Sum_probs=161.0

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHH
Q 010517           15 QSKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL   90 (508)
Q Consensus        15 ~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpL   90 (508)
                      ++|+||||+||..|+.++|+.|++    .|+++|.+|.+|+||||+|+.. |+.+++++|+++|++++..  +..|.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~-~~~~iv~~Ll~~ga~~~~~--~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcc-ccccccccccccccccccc--cccccccc
Confidence            479999999999999999998875    8999999999999999999998 9999999999999999988  77888999


Q ss_pred             HHHHHcCCHHHHHHHHHCCC-------------------------------------C-ccccCCCCCcHHHHHHHhCCH
Q 010517           91 HHAAKRGLEPTVRLLLSCGA-------------------------------------N-ALVRNDDCHTALGVARIKGHI  132 (508)
Q Consensus        91 h~A~~~g~~~~v~~Ll~~ga-------------------------------------~-~~~~d~~g~TpLh~A~~~g~~  132 (508)
                      +.|...++.++++.+.....                                     + ....+..|.++|+.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            99988888887777664321                                     1 123456789999999999999


Q ss_pred             HHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccC
Q 010517          133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ  200 (508)
Q Consensus       133 ~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~  200 (508)
                      .+++.+++.|.+.+  .+|..|.|||| +|+..|+.+++++|+++|++++.++..+.++++.|++.++
T Consensus       158 ~~~~~~~~~~~~~~--~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         158 SMVQLLLQHGANVN--AQMYSGSSALH-SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             HHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             hhhhhhhhhccccc--cccccCcchHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC
Confidence            99999999999998  89999999999 9999999999999999999999999999999999987665

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=3.8e-26  Score=220.25  Aligned_cols=185  Identities=22%  Similarity=0.229  Sum_probs=171.2

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      +.++|.+|.+|.||||+|+..|+.++|++|+++|++.+..+..+.||||+|+.. ++.++++.|+++|+..+..  |..|
T Consensus        63 Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~-~~~~~~~~l~~~~~~~~~~--~~~~  139 (291)
T d1s70b_          63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAV--NSEG  139 (291)
T ss_dssp             CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred             CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc-cccchhhcccccCcccccc--cccC
Confidence            457788999999999999999999999999999999999999999999999998 9999999999999999988  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CC--------------------------CccccCCCCCcHHHHHHHhCCHHHHHHHH
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSC-GA--------------------------NALVRNDDCHTALGVARIKGHINVVRAIE  139 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~-ga--------------------------~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll  139 (508)
                      .+++++|+..++.++++.|+.. +.                          +....+..|.||||+|+..|+.+++++|+
T Consensus       140 ~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  219 (291)
T d1s70b_         140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI  219 (291)
T ss_dssp             CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccc
Confidence            9999999999999988888753 22                          23456789999999999999999999999


Q ss_pred             HcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCcccccccccccc
Q 010517          140 SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQ  197 (508)
Q Consensus       140 ~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~  197 (508)
                      +.|++++  .++.+|+|||| +|+..|+.+++++|+++|++++.++..++++++.|.+
T Consensus       220 ~~g~din--~~~~~g~TpL~-~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         220 QARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             cceeccc--ccccCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            9999999  89999999999 9999999999999999999999999899999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=7.2e-26  Score=216.28  Aligned_cols=166  Identities=19%  Similarity=0.156  Sum_probs=146.8

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcC---CCCccc---
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG---ANINAY---   80 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~g---a~~n~~---   80 (508)
                      +.++|.+|.+|+||||+|+..|+.++|++||++|+|++.+|.+|.||||+|+.. ++.++++++...+   ..++..   
T Consensus        64 Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~~~  142 (277)
T d2fo1e1          64 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELDRN  142 (277)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred             CCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhh-cchhhhhhhhhcccccccccccccc
Confidence            356788999999999999999999999999999999999999999999999997 8888888876542   111111   


Q ss_pred             ---------------------------------------CCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCccccCCCCC
Q 010517           81 ---------------------------------------RPGGRGGTPLHHAAKRGLEPTVRLLL-SCGANALVRNDDCH  120 (508)
Q Consensus        81 ---------------------------------------~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~  120 (508)
                                                             ..+..|+||||+++..++.+++++++ ..+.+++.+|..|.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~  222 (277)
T d2fo1e1         143 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK  222 (277)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC
T ss_pred             cchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCC
Confidence                                                   01456899999999999999998754 67899999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhh
Q 010517          121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  176 (508)
Q Consensus       121 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~  176 (508)
                      ||||+|+..|+.++|++|+++|++++  .+|.+|+|||| +|+..|+.+++++|++
T Consensus       223 tpL~~A~~~g~~~iv~~Ll~~gadin--~~d~~G~T~L~-~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         223 TPIMLAAQEGRIEVVMYLIQQGASVE--AVDATDHTARQ-LAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSS--CCCSSSCCHHH-HHHHTTCHHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999  89999999999 9999999999999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-25  Score=213.13  Aligned_cols=190  Identities=20%  Similarity=0.168  Sum_probs=154.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccC-------------
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYR-------------   81 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~-------------   81 (508)
                      +++|+||+|++.|++++|++||++|+++|.++. .|.||||+|+.. |+.+++++|++.+...+..+             
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~-~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHc-CCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            468999999999999999999999999998764 799999999997 99999999999887664331             


Q ss_pred             -------------------------------------------------------------CCCCCCcHHHHHHHcCCHH
Q 010517           82 -------------------------------------------------------------PGGRGGTPLHHAAKRGLEP  100 (508)
Q Consensus        82 -------------------------------------------------------------~d~~g~tpLh~A~~~g~~~  100 (508)
                                                                                   .+..|.||||+|+.+|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                                                                         1122788899999999888


Q ss_pred             HHHHHHHC-CCCccccCCCCCcHHHHHHHhC----CHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517          101 TVRLLLSC-GANALVRNDDCHTALGVARIKG----HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  175 (508)
Q Consensus       101 ~v~~Ll~~-ga~~~~~d~~g~TpLh~A~~~g----~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll  175 (508)
                      ++++|+++ |++++..+..|.++++.+...+    ..+++++|+++|++++  .++.+|.|||| .|+..++.+++++|+
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n--~~~~~g~t~L~-~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN--VRGERGKTPLI-LAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS--CCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC--ccCCCCCCccc-hhhhcCcHHHHHHHH
Confidence            88888864 7888888888877776655432    3467888888888887  78888999999 888888999998888


Q ss_pred             h-CCCCCCCCCccccccccccccccChHHHHHHHH
Q 010517          176 P-CGTANPSKPLRFELVIYPSLQDVQPRAVIALWK  209 (508)
Q Consensus       176 ~-~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~  209 (508)
                      + .|++++.++..+.++++.|++.++.+.+..|+.
T Consensus       240 ~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~  274 (285)
T d1wdya_         240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK  274 (285)
T ss_dssp             HSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            6 488888888888888888888888665555443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-26  Score=194.70  Aligned_cols=121  Identities=28%  Similarity=0.345  Sum_probs=110.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC-CcHHHHHH
Q 010517           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG-GTPLHHAA   94 (508)
Q Consensus        16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g-~tpLh~A~   94 (508)
                      .+.++||+|+..|+.++|++||++|+|+|.+|..|.||||+|+ . |+.+++++|+++|+++|.+  +..| .||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~-g~~~~v~~Ll~~ga~~~~~--~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-c-ccccccccccccccccccc--ccccccccccccc
Confidence            3568999999999999999999999999999999999999775 5 8999999999999999988  5555 47999999


Q ss_pred             HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 010517           95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  140 (508)
Q Consensus        95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~  140 (508)
                      ..|+.+++++|+++|++++.+|..|.||||+|+++|+.+++++|++
T Consensus        78 ~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.2e-25  Score=222.18  Aligned_cols=224  Identities=21%  Similarity=0.132  Sum_probs=174.1

Q ss_pred             ccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccC---------
Q 010517           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR---------   81 (508)
Q Consensus        11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~---------   81 (508)
                      +.++..+.++|++|+..++.++++.|+++|++++..+.+|.+|||+|+.. |+.+++++|+++|++++..+         
T Consensus       126 ~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  204 (408)
T d1n11a_         126 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH-NNLDIVKLLLPRGGSPHSPAWNGYTPLHI  204 (408)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT-TCHHHHHHHGGGTCCSCCCCTTCCCHHHH
T ss_pred             cccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHc-CCHHHHHHHHhcCCcccccCCCCCCcchh
Confidence            33445555555555555555555555555555555555555555555554 55555555555555554331         


Q ss_pred             ----------------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q 010517           82 ----------------------PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE  139 (508)
Q Consensus        82 ----------------------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll  139 (508)
                                            .+..|.||||+|+..++.+++++++..+..++..|..|.|||+.|+..++.+++++|+
T Consensus       205 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll  284 (408)
T d1n11a_         205 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI  284 (408)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             hhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHH
Confidence                                  1556788888899999999999999999999999999999999999999999999999


Q ss_pred             HcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCC
Q 010517          140 SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQ  219 (508)
Q Consensus       140 ~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~  219 (508)
                      ++|++++  ..+..+.|||| .+...++.++++++++.|++++.++..+.++++.|++.++...+..|+.        +|
T Consensus       285 ~~g~~~~--~~~~~~~t~L~-~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~--------~G  353 (408)
T d1n11a_         285 KHGVMVD--ATTRMGYTPLH-VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK--------NG  353 (408)
T ss_dssp             HHTCCTT--CCCSSCCCHHH-HHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------TT
T ss_pred             HCCCccc--cccccccccch-hhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH--------CC
Confidence            9999998  88889999999 9999999999999999999999999899999999999988776655543        37


Q ss_pred             CCCcceeccCCCcchhHhhhhcCCChhHHH
Q 010517          220 PDPSLTIYDQATKIRYKFASANEGDKHQLQ  249 (508)
Q Consensus       220 ~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~  249 (508)
                      +|  ++++|+.|+||||+|.... ....++
T Consensus       354 Ad--~n~~d~~G~t~L~~A~~~~-~~~iv~  380 (408)
T d1n11a_         354 AS--PNEVSSDGTTPLAIAKRLG-YISVTD  380 (408)
T ss_dssp             CC--SCCCCSSSCCHHHHHHHTT-CHHHHH
T ss_pred             CC--CCCCCCCCCCHHHHHHHcC-CHHHHH
Confidence            88  8889999999999998753 334333

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=5.7e-27  Score=194.86  Aligned_cols=107  Identities=31%  Similarity=0.379  Sum_probs=96.3

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC
Q 010517           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (508)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g   97 (508)
                      +|||+||++.|+.++|++|+++|++++.+|.+|+||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|+.+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~-~~~~~~~~ll~~g~din~~--d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHH-STTTHHHHHHHSSCTTTCC--SSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccc-cccccccccccccceeeec--ccccccchhhhhhcC
Confidence            5899999999999999999999999999999999999999988 8899999999999999987  788999999999999


Q ss_pred             CHHHHHHHHHCCCCccccCCCCCcHHHHHH
Q 010517           98 LEPTVRLLLSCGANALVRNDDCHTALGVAR  127 (508)
Q Consensus        98 ~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~  127 (508)
                      +.+++++|+++|++++.+|.+|.||||+|.
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999998873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=190.32  Aligned_cols=122  Identities=25%  Similarity=0.289  Sum_probs=110.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC
Q 010517           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG   97 (508)
Q Consensus        18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g   97 (508)
                      .++||.|+..|+.++|++|+++|+|+|.+|.+|+||||+|+.. |+.+++++|+++|+++|.+  |..|+||||+|+.+|
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~-~~~~~~~~ll~~g~~~~~~--d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHHTT
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccc-ccccccccccccccccccc--cccCcccccccchhh
Confidence            4789999999999999999999999999999999999999998 9999999999999999988  889999999999999


Q ss_pred             CHHHHHHHHHCCCCccccCC-CCCcHHHHH--HHhCCHHHHHHHHHcC
Q 010517           98 LEPTVRLLLSCGANALVRND-DCHTALGVA--RIKGHINVVRAIESHI  142 (508)
Q Consensus        98 ~~~~v~~Ll~~ga~~~~~d~-~g~TpLh~A--~~~g~~~~v~~Ll~~g  142 (508)
                      +.+++++|+++|++++..+. .|.|+++++  ..+|+.+++++|+..+
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999999997764 588887765  5678899999998754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=5e-25  Score=201.55  Aligned_cols=170  Identities=24%  Similarity=0.187  Sum_probs=154.0

Q ss_pred             HHHHHHHHHcCCCCCc-cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC-----------
Q 010517           30 VDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG-----------   97 (508)
Q Consensus        30 ~~~v~~Ll~~g~~~~~-~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g-----------   97 (508)
                      .++|++||++|+|+|. .|.+|.||||+||.. |+.+++++|+.+|+++|.+  +..+.++++.++..+           
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~-g~~e~v~~Ll~~g~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARF-ARADAAKRLLDAGADANSQ--DNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHc-CCHHHHHHHHhhccccccc--cccccccccccccccccccccccccc
Confidence            5899999999999997 589999999999998 9999999999999999988  777777777776433           


Q ss_pred             -----------------------CHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCC
Q 010517           98 -----------------------LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG  154 (508)
Q Consensus        98 -----------------------~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g  154 (508)
                                             .....+.|+..+++++..+..|.|||++++..+..++++.|++.+.+++  .+|.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~--~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD--AQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccc--cccccc
Confidence                                   4556677888888999999999999999999999999999999999999  899999


Q ss_pred             CCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHH
Q 010517          155 PSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  205 (508)
Q Consensus       155 ~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~  205 (508)
                      .|||| +|+..|+.+++++|+++|++++.++..+.++++.|++.++.+.+.
T Consensus       157 ~TpL~-~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~  206 (209)
T d1ot8a_         157 ETPLF-LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVR  206 (209)
T ss_dssp             CCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccc-hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHh
Confidence            99999 999999999999999999999999989999999999998865543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=8.4e-27  Score=231.10  Aligned_cols=196  Identities=14%  Similarity=0.068  Sum_probs=154.3

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHH---HHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRA---LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~---Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      .+.++..|.|+||+|+++|+.++++.   |++.|+++|.+|.+|.||||+||.+ |+.++|++|+++|++++..+.+..|
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~-G~~~~v~~Ll~~g~~~~~~~~~~~g  161 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQAEN  161 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCccccccccCC
Confidence            35778899999999999999887765   7899999999999999999999998 9999999999999999987434569


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccccc---------------
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGW---------------  148 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~---------------  148 (508)
                      +||||+|+.+|+.++|++|++.|++.   +..+..|.||+|.|+.+|+.+++++|++.|++++..               
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  241 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPF  241 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHH
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHH
Confidence            99999999999999999999999765   344456778899999999999999999988664310               


Q ss_pred             ----------------ccccC----------------CCCHHHHHHhhcCCHHHHHHhhhCCCCCC-----CCCcccccc
Q 010517          149 ----------------LREFY----------------GPSFLEALAPQLMSRKIWVVVIPCGTANP-----SKPLRFELV  191 (508)
Q Consensus       149 ----------------~~~~~----------------g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~-----~~~~~~~~~  191 (508)
                                      ....+                +.++|+ .+...++.+++++|++.+....     ..+..++++
T Consensus       242 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~  320 (346)
T d2ajaa1         242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI-RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  320 (346)
T ss_dssp             HHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHH-HHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             HHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHH-HHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcH
Confidence                            00011                124666 6777888999999998776432     233356788


Q ss_pred             ccccccccChHHHHHH
Q 010517          192 IYPSLQDVQPRAVIAL  207 (508)
Q Consensus       192 l~~a~~~~~~~~v~~l  207 (508)
                      ++.|++.++...+..|
T Consensus       321 LhlA~~~Gn~e~v~lL  336 (346)
T d2ajaa1         321 LRLALRLGNQGACALL  336 (346)
T ss_dssp             HHHHHHHTCTTHHHHH
T ss_pred             HHHHHHcCcHHHHHHH
Confidence            9999998887666554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.8e-25  Score=183.76  Aligned_cols=120  Identities=22%  Similarity=0.254  Sum_probs=113.7

Q ss_pred             CChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCC-cHHHHHHH
Q 010517           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCH-TALGVARI  128 (508)
Q Consensus        50 G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-TpLh~A~~  128 (508)
                      +.++||+|+.+ |+.++|++|+++|+++|.+  |..|.||||+|+ .|+.+++++|+++|++++.++..|. ||||+|++
T Consensus         3 ~~~~L~~Aa~~-G~~~~v~~Ll~~gad~n~~--~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHC-CCHHHHHHHHHcCCccccc--cccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            56899999998 9999999999999999998  889999999775 7999999999999999999998876 69999999


Q ss_pred             hCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhh
Q 010517          129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  176 (508)
Q Consensus       129 ~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~  176 (508)
                      .|+.+++++|+++|++++  .+|.+|+|||| +|+..|+.+++++|++
T Consensus        79 ~g~~~~v~~Ll~~ga~~~--~~d~~G~T~l~-~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccc--cccCCCCCHHH-HHHHcCCHHHHHHHHh
Confidence            999999999999999999  99999999999 9999999999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2e-24  Score=209.75  Aligned_cols=144  Identities=15%  Similarity=0.114  Sum_probs=96.5

Q ss_pred             cCcccc-cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCC-------HHHHHHHHHcCCCCcc
Q 010517            8 MNQHQQ-RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL-------INVAKTLIELGANINA   79 (508)
Q Consensus         8 ~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~-------~~~v~~Ll~~ga~~n~   79 (508)
                      +++|.. |.+|+||||+||..|+.++|++||++|+|++.+|..|+||||+|+.. ++       .+++++|.   .+++.
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-~~~~~~~~~~~ll~~l~---~~~~~  172 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLY---PCLIL  172 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHG---GGGGE
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhc-ccchhhhhHHHHHHHHh---hhhhh
Confidence            345544 88999999999999999999999999999999999999999999975 43       23444443   34555


Q ss_pred             cCCCCCCCcHHHHHHHcCC----HH--------HHHHHHHCCCC------------------------------------
Q 010517           80 YRPGGRGGTPLHHAAKRGL----EP--------TVRLLLSCGAN------------------------------------  111 (508)
Q Consensus        80 ~~~d~~g~tpLh~A~~~g~----~~--------~v~~Ll~~ga~------------------------------------  111 (508)
                      +  |..|+||||+++..+.    ..        ++.++++.+..                                    
T Consensus       173 ~--d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         173 E--DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  250 (301)
T ss_dssp             E--CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             c--ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc
Confidence            5  7889999998886443    22        33444444322                                    


Q ss_pred             -ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHH
Q 010517          112 -ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE  159 (508)
Q Consensus       112 -~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~  159 (508)
                       +|.+|.+|+||||+|++.|+.++|++|+++|++++  ++|..|.|||+
T Consensus       251 ~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~--~~n~~G~Tpl~  297 (301)
T d1sw6a_         251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF--IANKSGLRPVD  297 (301)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT--CCCTTSCCGGG
T ss_pred             CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH
Confidence             34445555555555555555555555555555555  55555555555

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.6e-25  Score=184.70  Aligned_cols=107  Identities=24%  Similarity=0.258  Sum_probs=103.2

Q ss_pred             ChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC
Q 010517           51 KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (508)
Q Consensus        51 ~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g  130 (508)
                      .|||++|+.+ |+.++|++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         3 ~tpL~~A~~~-g~~~~v~~Ll~~g~d~n~~--~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHTTTCCCCCC--SSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHC-CCHHHHHHHHHhhhccccc--cccccccccccccccccccccccccccceeeecccccccchhhhhhcC
Confidence            4899999998 9999999999999999998  889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCcccccccccCCCCHHHHHHh
Q 010517          131 HINVVRAIESHICYFCGWLREFYGPSFLEALAP  163 (508)
Q Consensus       131 ~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~  163 (508)
                      +.+++++|+++|++++  .+|.+|.|||| +|.
T Consensus        80 ~~~~v~~Ll~~Gad~~--~~d~~G~t~l~-~a~  109 (118)
T d1myoa_          80 HVSCVKLLLSKGADKT--VKGPDGLTALE-ATD  109 (118)
T ss_dssp             CCHHHHHHHTTCCCSS--SSSSSTCCCCC-TCS
T ss_pred             chhhhhhhhcccccce--eeCCCCCCHHH-HHh
Confidence            9999999999999999  99999999999 763

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=183.72  Aligned_cols=130  Identities=25%  Similarity=0.364  Sum_probs=122.7

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG   86 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g   86 (508)
                      ..+++.+|..|.||||+|+ .|+.++|++||+++.+++..+..|.+||++++.. ++.+++++++++|+++|.+  |..|
T Consensus        26 ~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~n~~--~~~~  101 (156)
T d1bd8a_          26 LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVP--DGTG  101 (156)
T ss_dssp             CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSCCC--CTTS
T ss_pred             CCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--cCCC
Confidence            4567788999999999987 5899999999999999999999999999999998 9999999999999999998  8899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 010517           87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  141 (508)
Q Consensus        87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~  141 (508)
                      +||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus       102 ~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         102 ALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             Ceeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999887 6899999999999999999999999999999975

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.3e-23  Score=180.92  Aligned_cols=127  Identities=20%  Similarity=0.224  Sum_probs=115.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCcc------CCCCChHHHHHHHh--CCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517           17 KDELLYQWVIAGDVDAIRALRSQGASLEWM------DKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPGGRGGT   88 (508)
Q Consensus        17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~------d~~G~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~n~~~~d~~g~t   88 (508)
                      +...|+.|++.+++..+..++..|+|++..      +..|+||||+|+..  .++.++|++|+++|+++|.+  |..|+|
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~--d~~g~T   83 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGST   83 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhh--hhhhcc
Confidence            345677889999999999999999987655      67899999999974  26789999999999999998  889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcc
Q 010517           89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF  145 (508)
Q Consensus        89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~  145 (508)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|++.++..
T Consensus        84 pLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          84 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999999999999987653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.7e-24  Score=178.85  Aligned_cols=121  Identities=15%  Similarity=0.099  Sum_probs=112.2

Q ss_pred             hHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC
Q 010517           52 TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (508)
Q Consensus        52 TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~  131 (508)
                      ++||.||.. |+.++|++|+++|+|+|.+  |..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~-G~~~~v~~Ll~~g~d~n~~--d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccccccccccccccccccccccccccccccccccccCcccccccchhhH
Confidence            689999998 9999999999999999998  8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcccccccc-cCCCCHHHHHH--hhcCCHHHHHHhhhCC
Q 010517          132 INVVRAIESHICYFCGWLRE-FYGPSFLEALA--PQLMSRKIWVVVIPCG  178 (508)
Q Consensus       132 ~~~v~~Ll~~ga~~~~~~~~-~~g~tpL~~~A--~~~~~~~i~~~Ll~~g  178 (508)
                      .+++++|+++|++++  ..+ ..|+|+++ ++  ...|+.+++++|+..+
T Consensus        80 ~~~v~~Ll~~ga~v~--~~~~~~~~~~~~-~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          80 VQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHHcChHHHHHHHHhHH
Confidence            999999999999998  555 46899987 55  5778999999998654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-22  Score=192.97  Aligned_cols=171  Identities=27%  Similarity=0.304  Sum_probs=152.7

Q ss_pred             cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCcc----------CCCCChHHHHHHHhCCCHHHHHHHHHc-CCCCc
Q 010517           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM----------DKEGKTPLIVACMDSGLINVAKTLIEL-GANIN   78 (508)
Q Consensus        10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~----------d~~G~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~n   78 (508)
                      ....+..|.+.|++|+..|+...++.+++...+++..          +..|.||||+|+.+ |+.+++++|+++ |++++
T Consensus        98 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~i~  176 (285)
T d1wdya_          98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVN  176 (285)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH-TCHHHHHHHHHTSCCCTT
T ss_pred             ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHc-CCHHHHHHHHhccCCCcc
Confidence            3455778999999999999999999999987776543          45699999999998 999999999975 89999


Q ss_pred             ccCCCCCCCcHHHHHHHc----CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH-cCCcccccccccC
Q 010517           79 AYRPGGRGGTPLHHAAKR----GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFY  153 (508)
Q Consensus        79 ~~~~d~~g~tpLh~A~~~----g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~  153 (508)
                      ..  +..|.++++.+...    +..+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++  .+|.+
T Consensus       177 ~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din--~~d~~  252 (285)
T d1wdya_         177 AC--DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--DTDSD  252 (285)
T ss_dssp             CC--CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT--CCCTT
T ss_pred             cc--cCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc--CCCCC
Confidence            88  88899988876653    34579999999999999999999999999999999999999997 489999  89999


Q ss_pred             CCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCc
Q 010517          154 GPSFLEALAPQLMSRKIWVVVIPCGTANPSKPL  186 (508)
Q Consensus       154 g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~  186 (508)
                      |.|||| +|++.++.+++++|+++|++++.+|.
T Consensus       253 G~TpL~-~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         253 GKTALL-LAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             SCCHHH-HHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCCHHH-HHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999 99999999999999999999988773

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.1e-22  Score=177.02  Aligned_cols=149  Identities=17%  Similarity=0.136  Sum_probs=139.5

Q ss_pred             hHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC
Q 010517           52 TPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  131 (508)
Q Consensus        52 TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~  131 (508)
                      +|||+||.. |+.++|++|+++|+++|.+  |..|+||||+|+ .|+.+++++|+++|++++.++..|.++|+.++..++
T Consensus         3 ~~Lh~Aa~~-g~~~~v~~Ll~~g~d~n~~--d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAAR-GDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHH-TCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHc-CCHHHHHHHHHCCCCcCcc--CCcccccccccc-cccccccccccccccccccccccCcccccccccccc
Confidence            899999998 9999999999999999998  889999999886 789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCC-CCCCCCccccccccccccccChHHHHHH
Q 010517          132 INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT-ANPSKPLRFELVIYPSLQDVQPRAVIAL  207 (508)
Q Consensus       132 ~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~-~~~~~~~~~~~~l~~a~~~~~~~~v~~l  207 (508)
                      .+++++|++.+.+++  ..+..|.+||| .|+..++.+++++|++++. +.+.++..++++++.+++.++.+.+..|
T Consensus        79 ~~~~~~l~~~~~~~~--~~~~~~~~~l~-~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          79 LDTLQTLLEFQADVN--IEDNEGNLPLH-LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             HHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccc--ccccccccccc-cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999998  89999999999 9999999999999999986 7788888899999999998887765443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=185.80  Aligned_cols=161  Identities=24%  Similarity=0.224  Sum_probs=142.8

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC-----------
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-----------   75 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga-----------   75 (508)
                      +.+++.+|..|.||||+|+..|+.++|+.|+++|++++..+..|.++++.|... ++.++++.+.....           
T Consensus        30 g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  108 (228)
T d1k1aa_          30 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEARNY  108 (228)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCCCT
T ss_pred             CCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccccc-ccccchhhhhhcccccccccccccc
Confidence            456788899999999999999999999999999999999999999999999886 77777776655432           


Q ss_pred             --------------------------CCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHh
Q 010517           76 --------------------------NINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK  129 (508)
Q Consensus        76 --------------------------~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~  129 (508)
                                                +.... .+..|.++||+|+..+...+++.+++.|.+++.+|..|.||||+|+..
T Consensus       109 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  187 (228)
T d1k1aa_         109 DGLTALHVAVNTECQETVQLLLERGADIDAV-DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR  187 (228)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhccccccccc-cccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHc
Confidence                                      11111 145689999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHH
Q 010517          130 GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  172 (508)
Q Consensus       130 g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~  172 (508)
                      |+.+++++|+++|++++  .+|.+|+|||| +|++.++.++++
T Consensus       188 g~~~~v~~Ll~~Gad~n--~~d~~G~TpL~-~A~~~~~~divk  227 (228)
T d1k1aa_         188 GLLPLVRTLVRSGADSS--LKNCHNDTPLM-VARSRRVIDILR  227 (228)
T ss_dssp             TCHHHHHHHHHTTCCTT--CCCTTSCCTTT-TCSSHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHhCCCccccC
Confidence            99999999999999999  99999999999 999999988874

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=2.6e-24  Score=212.93  Aligned_cols=169  Identities=14%  Similarity=0.032  Sum_probs=135.1

Q ss_pred             ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccC--CCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCC-C
Q 010517            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-G   83 (508)
Q Consensus         7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d--~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~-d   83 (508)
                      ..++|.+|.+|.||||+||+.|+.++|++|+++|++++..+  .+|.||||+|+.+ |+.++|++|++.|++....+. +
T Consensus       116 ~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~-g~~~iv~~Ll~~~~~~~~~~~~~  194 (346)
T d2ajaa1         116 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN-GHLHVLNRLCELAPTEATAMIQA  194 (346)
T ss_dssp             CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHT-TCHHHHHHHHHSCGGGHHHHHHH
T ss_pred             CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHH-hhHHHHHHHHHcCCccccccccc
Confidence            45678899999999999999999999999999999998876  4699999999998 999999999999987532210 3


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc---------------------------------CCC------------
Q 010517           84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVR---------------------------------NDD------------  118 (508)
Q Consensus        84 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~---------------------------------d~~------------  118 (508)
                      ..|.||||.|+.+|+.++|++|++.|++++..                                 ...            
T Consensus       195 ~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~  274 (346)
T d2ajaa1         195 ENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL  274 (346)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHH
T ss_pred             CCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhccccc
Confidence            45678888899999999999999887653211                                 111            


Q ss_pred             ----CCcHHHHHHHhCCHHHHHHHHHcCCccc---ccccccCCCCHHHHHHhhcCCHHHHHHhhhC
Q 010517          119 ----CHTALGVARIKGHINVVRAIESHICYFC---GWLREFYGPSFLEALAPQLMSRKIWVVVIPC  177 (508)
Q Consensus       119 ----g~TpLh~A~~~g~~~~v~~Ll~~ga~~~---~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~  177 (508)
                          +.++|+.|+..++.+++++|++.+....   ....+.+|.|||| +|++.|+.+++++|++.
T Consensus       275 ~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh-lA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR-LALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH-HHHHHTCTTHHHHHTTS
T ss_pred             ccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH-HHHHcCcHHHHHHHhCC
Confidence                2356777878889999999998876432   1134567999999 99999999999999964

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.1e-21  Score=170.00  Aligned_cols=147  Identities=21%  Similarity=0.226  Sum_probs=138.6

Q ss_pred             ChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC
Q 010517           51 KTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  130 (508)
Q Consensus        51 ~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g  130 (508)
                      .||||.||+. |+.++|++||++|++++ .  |..|+||||+|+..++.++++.++.........+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~-g~~~~v~~LL~~ga~~~-~--~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARA-GQDDEVRILMANGAPFT-T--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHH-TCHHHHHHHHHHTCCCC-C--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHC-CCHHHHHHHHHcCCCcc-c--ccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            4999999998 99999999999999987 3  889999999999999999999999998888888889999999999999


Q ss_pred             CHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHH
Q 010517          131 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV  204 (508)
Q Consensus       131 ~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v  204 (508)
                      +.+++++|...+++.+  .++.+|.|||| +|+..|+.+++++|+++|++++..+..+.++++.++..++.+.+
T Consensus        79 ~~~~~~~l~~~~~~~~--~~~~~g~T~L~-~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_          79 HANIVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             CHHHHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cceeeecccccCCccc--cccccCchHHH-hhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999998  89999999999 99999999999999999999999999999999999998886543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7.4e-22  Score=191.32  Aligned_cols=149  Identities=17%  Similarity=0.079  Sum_probs=122.3

Q ss_pred             cCCCCCcc-CCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCH-------HHHHHHHHCCC
Q 010517           39 QGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLE-------PTVRLLLSCGA  110 (508)
Q Consensus        39 ~g~~~~~~-d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~-------~~v~~Ll~~ga  110 (508)
                      .+.++|.. |.+|+||||+||.. |+.++|++|+++|++++.+  |..|+||||+|+..++.       +++++|.   .
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~-g~~~~v~~Ll~~gad~~~~--d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~  168 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLY---P  168 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---G
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcC--CcccccHHHHhhhcccchhhhhHHHHHHHHh---h
Confidence            56788865 99999999999998 9999999999999999998  88999999999987652       3444443   3


Q ss_pred             CccccCCCCCcHHHHHHHhCC----HH--------HHHHHHHcCCc----------------------------------
Q 010517          111 NALVRNDDCHTALGVARIKGH----IN--------VVRAIESHICY----------------------------------  144 (508)
Q Consensus       111 ~~~~~d~~g~TpLh~A~~~g~----~~--------~v~~Ll~~ga~----------------------------------  144 (508)
                      .++..|..|+||||+++..+.    ..        ++.++++.+..                                  
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  248 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHH
Confidence            467789999999999886544    22        33344443322                                  


Q ss_pred             ---ccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccc
Q 010517          145 ---FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL  196 (508)
Q Consensus       145 ---~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~  196 (508)
                         +|  .+|.+|+|||| +|++.|+.+++++|+++|++++..+..+.++++.++
T Consensus       249 ~~~in--~~D~~G~TpLh-~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         249 ANMLN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHTTT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             hcCcc--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence               34  67999999999 999999999999999999999999999999988775

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=6.7e-21  Score=165.11  Aligned_cols=125  Identities=14%  Similarity=0.063  Sum_probs=112.3

Q ss_pred             HHHHHHHhCCCHHHHHHHHHcCCCCccc----CCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCccccCCCCCcHHHH
Q 010517           53 PLIVACMDSGLINVAKTLIELGANINAY----RPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCHTALGV  125 (508)
Q Consensus        53 pLh~Aa~~~g~~~~v~~Ll~~ga~~n~~----~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~  125 (508)
                      .|..|++. +.+..+..++..|++++..    ..+..|+||||+|+..   ++.++|++|+++|++++.+|.+|+||||+
T Consensus         9 ~L~~Av~~-~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKT-RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHh-CCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            45577776 8899999999999887654    1256799999999974   67899999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCC
Q 010517          126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  181 (508)
Q Consensus       126 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~  181 (508)
                      |+..|+.+++++|+++|++++  .+|.+|+|||| +|+..|+.+++++|++.+...
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccCcccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHhCCCC
Confidence            999999999999999999999  99999999999 999999999999999987644

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.6e-11  Score=91.79  Aligned_cols=50  Identities=34%  Similarity=0.785  Sum_probs=43.6

Q ss_pred             cccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccceeEe
Q 010517          455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRL  505 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~i~i  505 (508)
                      ..|+||++...+++.+||||.| |..|+..|... ...||+||..|...-.|
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEE-CHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCccCCCcCCCeEEeCCCCee-eHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            5799999999999999999999 99999998764 46799999999865444

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.09  E-value=1.4e-11  Score=89.39  Aligned_cols=50  Identities=28%  Similarity=0.785  Sum_probs=43.3

Q ss_pred             cccccccccCCce-EEeCCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010517          455 SSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  505 (508)
Q Consensus       455 ~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i  505 (508)
                      ..|+||++.+.+. +.+||||.| |..|+.+|.+.+..||+||++|...+..
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~F-c~~Ci~~w~~~~~~CP~CR~~i~~~~~~   56 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHT   56 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred             CCCccCCcCccCCcEEeCCCCcC-cHHHHHHHHHhCCcCCCCCcchHhhccc
Confidence            5799999998765 557999999 9999999998888999999999876543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.8e-11  Score=84.54  Aligned_cols=44  Identities=25%  Similarity=0.591  Sum_probs=38.4

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      +..+|+||++.+.+++.+||||.| |..|+.++   +..||+||++|.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~f-C~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHH-hHHHHHcC---CCcCcCCCCccc
Confidence            446999999999999999999999 99997654   347999999986

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=1.4e-10  Score=87.47  Aligned_cols=47  Identities=28%  Similarity=0.541  Sum_probs=41.8

Q ss_pred             CccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010517          453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~  500 (508)
                      ++..|+||++.+.+++.++|||.| |..|+.++.+. +..||+||.++.
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~p~~   69 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCF   69 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             cCcCCccCCcchhcceecCCCChh-hHHHHHHHHhhCCCcCcccCCCCC
Confidence            346899999999999999999999 99999998754 468999999886

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.93  E-value=1.7e-10  Score=79.33  Aligned_cols=46  Identities=22%  Similarity=0.646  Sum_probs=38.3

Q ss_pred             CccccccccccCCc---eEEe-CCCCchhhHHhHHHHhccCCccccccccc
Q 010517          453 SSSSCVICWEAPVE---GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKI  499 (508)
Q Consensus       453 ~~~~C~iC~~~~~~---~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i  499 (508)
                      +..+|+||++.+..   +..+ +|+|.| |..|+.+|...+..||+||++|
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~F-h~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcc-cHHHHHHHHHhCCcCCCCCCEe
Confidence            34689999998743   4444 699999 9999999998888999999976

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=3.6e-10  Score=78.24  Aligned_cols=50  Identities=16%  Similarity=0.325  Sum_probs=44.4

Q ss_pred             ccccccccCCceEEeC-CCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010517          456 SCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  506 (508)
Q Consensus       456 ~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~  506 (508)
                      .|+||++.+.++|..+ |||.| |++|+.+|...++.||+||+++.  +.++|.
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~f-c~~cI~~~l~~~~~CP~c~~~l~~~dLipik   54 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV   54 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred             CCccCCchHHhcCccCCCCCcc-cHHHHHHHHhhccCCCccCCcCCHHhceeCC
Confidence            6999999999999885 99999 99999999988889999999996  455553

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.9e-10  Score=80.15  Aligned_cols=47  Identities=28%  Similarity=0.710  Sum_probs=37.6

Q ss_pred             ccccccccccC-----CceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517          454 SSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  501 (508)
Q Consensus       454 ~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  501 (508)
                      +..|+||++..     ...+..+|||.| |..|+..|... +..||+||++|..
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHh-hHHHHHHHhCcCcCCCCCCCcCccc
Confidence            46999999852     234566999999 99999999754 4579999999864

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.6e-10  Score=76.30  Aligned_cols=45  Identities=29%  Similarity=0.679  Sum_probs=36.4

Q ss_pred             ccccccccCC----ceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517          456 SCVICWEAPV----EGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  501 (508)
Q Consensus       456 ~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  501 (508)
                      +|+||++.+.    .....+|||.| |..|+.+|... +.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~-c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCC-CHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCcc-chHHHHHHHhhcCCCCCccCCcCCC
Confidence            7999999752    23345899999 99999999875 5679999999863

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.3e-09  Score=85.88  Aligned_cols=46  Identities=30%  Similarity=0.768  Sum_probs=40.6

Q ss_pred             ccccccccccCCceEEeCCCCchhhHHhHHHHhccC---Ccccccccccc
Q 010517          454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN  500 (508)
Q Consensus       454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~  500 (508)
                      ...|+||++.+.+++.++|||.| |..|+..|....   ..||+||.++.
T Consensus        21 ~l~CpIC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CcCCCccCchhCCeEEcCCCCch-hhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            35899999999999999999999 999999987543   37999999885

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=5.8e-09  Score=77.59  Aligned_cols=49  Identities=16%  Similarity=0.196  Sum_probs=43.5

Q ss_pred             CCccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~  501 (508)
                      .++..|+||++.+.++|.++|||.| |..|+.+|...+ ..||.||.++..
T Consensus         6 P~~l~CpIc~~~m~dPV~~~cgh~f-c~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CccCCCcCcCchhhCceEccCCCcc-hHHHHHHHHHHCCCCCCcccccCCc
Confidence            4557999999999999999999999 999999988764 579999999864

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=5.1e-09  Score=78.30  Aligned_cols=50  Identities=20%  Similarity=0.096  Sum_probs=43.5

Q ss_pred             CCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517          451 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  501 (508)
Q Consensus       451 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  501 (508)
                      ..++..|+||++.+.++|.++|||.| |..|+.++... +..||+||.++..
T Consensus         4 iP~~l~CpIc~~l~~dPv~~~cGhtf-c~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           4 IPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCccccCcCcCchhhhhcccCCcCee-cHHHHHHHHhcCCccCCCccccccc
Confidence            34567999999999999999999999 99999998765 4579999999863

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.4e-08  Score=75.85  Aligned_cols=34  Identities=21%  Similarity=0.369  Sum_probs=30.6

Q ss_pred             ceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          466 EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       466 ~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      .++.++|||.| |..|+.+|.+.+..||+||+++.
T Consensus        51 ~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          51 TVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CeEEccccCcc-cHHHHHHHHHHCCcCCCCCCccc
Confidence            36778999999 99999999998899999999874

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=2.9e-08  Score=79.64  Aligned_cols=45  Identities=29%  Similarity=0.667  Sum_probs=36.1

Q ss_pred             cccccccccCC------------------ceEEeCCCCchhhHHhHHHHhccC-----Ccccccccccc
Q 010517          455 SSCVICWEAPV------------------EGACVPCGHMAGCMSCLSEIKAKK-----GDCPVCRTKIN  500 (508)
Q Consensus       455 ~~C~iC~~~~~------------------~~~~~pCgH~~~C~~C~~~~~~~~-----~~CP~Cr~~i~  500 (508)
                      ..|+||++...                  .+.+++|||.| |..|+..|...+     ..||+||+.+.
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~F-H~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCChh-hHHHHHHHHHhcCcCCCCccccccchhc
Confidence            57999998753                  24577999999 999999987642     36999998774

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=9.5e-09  Score=79.89  Aligned_cols=45  Identities=31%  Similarity=0.693  Sum_probs=38.7

Q ss_pred             CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCcccccccccc
Q 010517          453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  500 (508)
Q Consensus       453 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  500 (508)
                      +...|+||++.+.+++.+ +|||.| |..|+.+|..  ..||.||.++.
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~   66 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW   66 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hcCCCccCCchhhcCceeCCCCCch-hHHHHHHHHh--ccccccCCcCc
Confidence            446899999999999865 899999 9999988864  46999999875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.5e-07  Score=72.74  Aligned_cols=49  Identities=10%  Similarity=0.015  Sum_probs=43.6

Q ss_pred             CCccccccccccCCceEEeCCCC-chhhHHhHHHHhccCCccccccccccc
Q 010517          452 GSSSSCVICWEAPVEGACVPCGH-MAGCMSCLSEIKAKKGDCPVCRTKINQ  501 (508)
Q Consensus       452 ~~~~~C~iC~~~~~~~~~~pCgH-~~~C~~C~~~~~~~~~~CP~Cr~~i~~  501 (508)
                      .++..|+||.+.+.++|.+||+| .| |..|+.+|...+..||+||+++..
T Consensus        20 P~~f~CPI~~~lm~dPV~~~~~~~ty-~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cHHhCCcCchhHHHHHHhcccccchh-hHHHHHHHHHhcCCcccccccccc
Confidence            45689999999999999999886 56 999999998888899999999863

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.24  E-value=1.7e-07  Score=65.42  Aligned_cols=49  Identities=29%  Similarity=0.491  Sum_probs=39.4

Q ss_pred             CCCccccccccccCCceEEeCCC-----CchhhHHhHHHHhcc--CCcccccccccc
Q 010517          451 DGSSSSCVICWEAPVEGACVPCG-----HMAGCMSCLSEIKAK--KGDCPVCRTKIN  500 (508)
Q Consensus       451 ~~~~~~C~iC~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CP~Cr~~i~  500 (508)
                      +++...|.||++...+....||+     |.| |..|+.+|...  +..||+||+++.
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~-H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEE-cHHHHHHHHhhCCCCCCcccCCeee
Confidence            34557999999987777667775     988 99999998753  458999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=7.4e-05  Score=56.78  Aligned_cols=41  Identities=22%  Similarity=0.499  Sum_probs=30.5

Q ss_pred             cccccccccCC--c-eEEeCCCCchhhHHhHHHHhcc-----C---Ccccccc
Q 010517          455 SSCVICWEAPV--E-GACVPCGHMAGCMSCLSEIKAK-----K---GDCPVCR  496 (508)
Q Consensus       455 ~~C~iC~~~~~--~-~~~~pCgH~~~C~~C~~~~~~~-----~---~~CP~Cr  496 (508)
                      ..|.||++...  + +.+.+|+|.| |..|+..+...     .   .+||.|+
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~f-C~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CcCccCCCcccCCceEEECCCCCEe-CCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            68999999853  3 4455899999 99999876542     1   2699864

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.33  E-value=0.035  Score=37.54  Aligned_cols=31  Identities=32%  Similarity=0.654  Sum_probs=27.1

Q ss_pred             cccccccccCCceEEeCCC----CchhhHHhHHHHh
Q 010517          455 SSCVICWEAPVEGACVPCG----HMAGCMSCLSEIK  486 (508)
Q Consensus       455 ~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~~  486 (508)
                      ..|.+|.|+..+.-|+.|-    |.| |+.|....-
T Consensus         9 l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~si   43 (80)
T d2cs3a1           9 LCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESI   43 (80)
T ss_dssp             CCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHH
T ss_pred             eeeeeehhhhcCCceEeCCCCcCCce-eccccHHHH
Confidence            5899999999999999884    999 999988743

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.16  E-value=0.68  Score=32.37  Aligned_cols=48  Identities=27%  Similarity=0.641  Sum_probs=32.7

Q ss_pred             CccccccccccCC----ceEEe---CCCCchhhHHhHHHHh-ccCCccccccccccc
Q 010517          453 SSSSCVICWEAPV----EGACV---PCGHMAGCMSCLSEIK-AKKGDCPVCRTKINQ  501 (508)
Q Consensus       453 ~~~~C~iC~~~~~----~~~~~---pCgH~~~C~~C~~~~~-~~~~~CP~Cr~~i~~  501 (508)
                      +...|.||-|..-    --+|+   -|+--+ |..|.+-=. ..+..||.|.++...
T Consensus        15 ~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPv-CrpCyEYErkeG~q~CpqCkt~Ykr   70 (93)
T d1weoa_          15 DGQFCEICGDQIGLTVEGDLFVACNECGFPA-CRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCC-CHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             ccchhhhcccccccCCCCCEEEEecccCCcc-chHHHHHHHhccCccCcccCChhhh
Confidence            3469999998632    11233   566666 999987644 446789999988753